boris-behav-obs 9.7.15__py3-none-any.whl → 9.8.2__py3-none-any.whl

boris/__init__.py

@@ -2,7 +2,7 @@
 BORIS
 Behavioral Observation Research Interactive Software
 
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/__main__.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/about.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
@@ -80,7 +80,8 @@ def actionAbout_activated(self):
     programs_versions.extend(["\nGraphViz", gv_result if "graphviz" in gv_result else "not installed", "https://www.graphviz.org/"])
 
     about_dialog: QMessageBox = QMessageBox()
-    about_dialog.setIconPixmap(QPixmap(":/boris_unito"))
+    # about_dialog.setIconPixmap(QPixmap(":/boris_unito"))
+    about_dialog.setIconPixmap(QPixmap(":/dbios_unito"))
 
     about_dialog.setWindowTitle(f"About {cfg.programName}")
     about_dialog.setStandardButtons(QMessageBox.Ok)
@@ -90,7 +91,7 @@ def actionAbout_activated(self):
     about_dialog.setInformativeText(
         (
             f"<b>{cfg.programName}</b> v. {version.__version__} - {version.__version_date__}"
-            "<p>Copyright &copy; 2012-2025 Olivier Friard - Marco Gamba<br>"
+            "<p>Copyright &copy; 2012-2026 Olivier Friard - Marco Gamba<br>"
             "Department of Life Sciences and Systems Biology<br>"
             "University of Torino - Italy<br>"
             "<br>"

boris/add_modifier.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/advanced_event_filtering.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/analysis_plugins/irr_weighted_cohen_kappa.py

@@ -4,9 +4,9 @@ BORIS plugin
 Inter Rater Reliability (IRR) Weighted Cohen's Kappa
 """
 
-import pandas as pd
-from typing import List, Tuple, Dict, Optional
+from typing import Dict, List, Optional, Tuple
 
+import pandas as pd
 from PySide6.QtWidgets import QInputDialog
 
 __version__ = "0.0.3"

boris/behav_coding_map_creator.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/behavior_binary_table.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/behaviors_coding_map.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/boris_cli.py

@@ -3,7 +3,7 @@ BORIS CLI
 
 Behavioral Observation Research Interactive Software Command Line Interface
 
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/cmd_arguments.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 
   This program is free software; you can redistribute it and/or modify

boris/coding_pad.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/config.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 
@@ -165,6 +165,7 @@ REMOVE = "Remove"
 SAVE = "Save"
 DISCARD = "Discard"
 OK = "OK"
+ABORT = "Abort"
 OVERWRITE = "Overwrite"
 OVERWRITE_ALL = "Overwrite all"
 SKIP = "Skip"
@@ -493,6 +494,13 @@ FRAME_DEFAULT_CACHE_SIZE = 1
 
 EXCLUDED = "excluded"
 
+# codes for Input_dialog class
+CHECKBOX = "cb"
+LINE_EDIT = "le"
+SPINBOX = "sb"
+DOUBLE_SPINBOX = "dsb"
+ITEMS_LIST = "il"
+
 # modifiers
 MODIFIERS = "modifiers"
 SINGLE_SELECTION = 0
@@ -740,6 +748,7 @@ INIT_PARAM = {
     PROJECT_FILE_INDENTATION: PROJECT_FILE_INDENTATION_DEFAULT_VALUE,
     f"{MEDIA} tw fields": MEDIA_TW_EVENTS_FIELDS_DEFAULT,
     # FRAME_STEP_SIZE: FRAME_STEP_SIZE_DEFAULT_VALUE,
+    TOOLBAR_ICON_SIZE: DEFAULT_TOOLBAR_ICON_SIZE_VALUE,
 }
 
 SDIS_EXT = "sds"

boris/config_file.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 
@@ -21,27 +21,27 @@ This file is part of BORIS.
 Read and write the BORIS config file
 """
 
-import pathlib as pl
 import logging
+import pathlib as pl
 import time
 
+from PySide6.QtCore import QByteArray, QSettings
+
 from . import config as cfg
 from . import dialog
 
-from PySide6.QtCore import QByteArray, QSettings
-
 
-def read(self):
+def read(self) -> None:
     """
     read config file
     """
 
-    ini_fil_p_pe_p_path = pl.Path.home() / pl.Path(".boris")
+    ini_file_path = pl.Path.home() / pl.Path(".boris")
 
-    logging.debug(f"read config file: {ini_fil_p_pe_p_path}")
+    logging.debug(f"read config file: {ini_file_path}")
 
-    if ini_fil_p_pe_p_path.is_file():
-        settings = QSettings(str(ini_fil_p_pe_p_path), QSettings.IniFormat)
+    if ini_file_path.is_file():
+        settings = QSettings(str(ini_file_path), QSettings.Format.IniFormat)
 
         try:
             self.config_param = settings.value("config")
@@ -180,7 +180,7 @@ def read(self):
                                 "(An internet connection is required)\n"
                                 "You can change this option in the Preferences (File > Preferences)"
                             ),
-                            [cfg.YES, cfg.NO],
+                            (cfg.YES, cfg.NO),
                         )
                         == cfg.YES
                     )
@@ -244,7 +244,7 @@ def read(self):
                 dialog.MessageDialog(
                     cfg.programName,
                     ("The colors list contain colors that are very light.\nDo you want to reload the default colors list?"),
-                    [cfg.NO, cfg.YES],
+                    (cfg.NO, cfg.YES),
                 )
                 == cfg.YES
             ):
@@ -261,7 +261,7 @@ def read(self):
                 dialog.MessageDialog(
                     cfg.programName,
                     ("The colors list contain colors that are very light.\nDo you want to reload the default colors list?"),
-                    [cfg.NO, cfg.YES],
+                    (cfg.NO, cfg.YES),
                 )
                 == cfg.YES
             ):
@@ -280,7 +280,7 @@ def read(self):
                         "You can change this option in the"
                         " Preferences (File > Preferences)"
                     ),
-                    [cfg.NO, cfg.YES],
+                    (cfg.NO, cfg.YES),
                 )
                 == cfg.YES
             )
@@ -289,18 +289,17 @@ def read(self):
 
     # recent projects
     logging.debug("read recent projects")
+    self.recent_projects: list = []
     recent_projects_file_path = pl.Path.home() / ".boris_recent_projects"
     if recent_projects_file_path.is_file():
-        settings = QSettings(str(recent_projects_file_path), QSettings.IniFormat)
+        settings = QSettings(str(recent_projects_file_path), QSettings.Format.IniFormat)
         try:
             self.recent_projects = settings.value("recent_projects").split("|||")
             while "" in self.recent_projects:
                 self.recent_projects.remove("")
             self.set_recent_projects_menu()
         except Exception:
-            self.recent_projects = []
-    else:
-        self.recent_projects = []
+            pass
 
 
 def save(self, lastCheckForNewVersion=0):
@@ -312,7 +311,7 @@ def save(self, lastCheckForNewVersion=0):
 
     logging.debug(f"save config file: {file_path}")
 
-    settings = QSettings(str(file_path), QSettings.IniFormat)
+    settings = QSettings(str(file_path), QSettings.Format.IniFormat)
 
     settings.setValue("config", self.config_param)
 
@@ -352,5 +351,5 @@ def save(self, lastCheckForNewVersion=0):
     # recent projects
     logging.debug("Save recent projects")
 
-    settings = QSettings(str(pl.Path.home() / ".boris_recent_projects"), QSettings.IniFormat)
+    settings = QSettings(str(pl.Path.home() / ".boris_recent_projects"), QSettings.Format.IniFormat)
     settings.setValue("recent_projects", "|||".join(self.recent_projects))

boris/connections.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
@@ -22,35 +22,34 @@ Copyright 2012-2025 Olivier Friard
 from PySide6.QtCore import Qt, QTimer
 from PySide6.QtGui import QAction
 
-from . import config as cfg
 from . import (
     about,
     behav_coding_map_creator,
     behavior_binary_table,
     behaviors_coding_map,
     coding_pad,
+    cooccurence,
     event_operations,
     events_snapshots,
     export_events,
+    external_processes,
     geometric_measurement,
     image_overlay,
     import_observations,
     irr,
     latency,
-    cooccurence,
     media_file,
     observation_operations,
     preferences,
+    project_functions,
     project_import_export,
     synthetic_time_budget,
     time_budget_widget,
     transitions,
     video_equalizer,
     video_operations,
-    project_functions,
-    external_processes,
 )
-
+from . import config as cfg
 from . import state_events as state_events
 
 
@@ -151,8 +150,8 @@ def connections(self):
     self.actionExport_events_as_Praat_TextGrid.triggered.connect(lambda: export_events.export_events_as_textgrid(self))
     self.actionJWatcher.triggered.connect(lambda: export_events.export_tabular_events(self, "jwatcher"))
 
-    self.actionExtract_events_from_media_files.triggered.connect(lambda: events_snapshots.extract_events(self))
-    self.actionExtract_frames_from_media_files.triggered.connect(lambda: events_snapshots.events_snapshots(self))
+    self.actionExtract_events_from_media_files.triggered.connect(lambda: events_snapshots.extract_media_clips(self))
+    self.actionExtract_frames_from_media_files.triggered.connect(lambda: events_snapshots.extract_media_snapshots(self))
 
     self.actionCohen_s_kappa.triggered.connect(lambda: irr.irr_cohen_kappa(self))
     self.actionNeedleman_Wunsch.triggered.connect(lambda: irr.needleman_wunch(self))
@@ -268,7 +267,7 @@ def connections(self):
     self.tv_events.doubleClicked.connect(self.tv_events_doubleClicked)
 
     # Actions for twEthogram context menu
-    self.twEthogram.setContextMenuPolicy(Qt.ActionsContextMenu)
+    self.twEthogram.setContextMenuPolicy(Qt.ContextMenuPolicy.ActionsContextMenu)
     self.twEthogram.horizontalHeader().sortIndicatorChanged.connect(self.twEthogram_sorted)
 
     self.actionViewBehavior.triggered.connect(self.view_behavior)
@@ -283,7 +282,7 @@ def connections(self):
     self.twEthogram.addAction(self.actionShowAllBehaviors)
 
     # Actions for twSubjects context menu
-    self.twSubjects.setContextMenuPolicy(Qt.ActionsContextMenu)
+    self.twSubjects.setContextMenuPolicy(Qt.ContextMenuPolicy.ActionsContextMenu)
     self.twSubjects.horizontalHeader().sortIndicatorChanged.connect(self.sort_twSubjects)
     self.actionFilterSubjects.triggered.connect(self.filter_subjects)
     self.twSubjects.addAction(self.actionFilterSubjects)
@@ -297,7 +296,7 @@ def connections(self):
     # tw_headers.addAction(self.actionConfigure_twEvents_columns)
 
     tv_headers = self.tv_events.horizontalHeader()
-    tv_headers.setContextMenuPolicy(Qt.ActionsContextMenu)
+    tv_headers.setContextMenuPolicy(Qt.ContextMenuPolicy.ActionsContextMenu)
     tv_headers.addAction(self.actionConfigure_tvevents_columns)
 
     # Actions for twEvents menu
@@ -340,7 +339,7 @@ def connections(self):
     # self.twEvents.addAction(self.actionDelete_selected_events)
 
     # Actions for tv_events menu
-    self.tv_events.setContextMenuPolicy(Qt.ActionsContextMenu)
+    self.tv_events.setContextMenuPolicy(Qt.ContextMenuPolicy.ActionsContextMenu)
 
     self.tv_events.addAction(self.actionAdd_event)
     self.tv_events.addAction(self.actionEdit_selected_events)
@@ -385,7 +384,7 @@ def connections(self):
     # Actions for twSubjects context menu
     self.actionDeselectCurrentSubject.triggered.connect(lambda: self.update_subject(""))
 
-    self.twSubjects.setContextMenuPolicy(Qt.ActionsContextMenu)
+    self.twSubjects.setContextMenuPolicy(Qt.ContextMenuPolicy.ActionsContextMenu)
     self.twSubjects.addAction(self.actionDeselectCurrentSubject)
 
     # subjects

boris/converters.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/cooccurence.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by