birder 0.3.3__py3-none-any.whl → 0.4.1__py3-none-any.whl

birder/tools/show_det_iterator.py

@@ -24,6 +24,7 @@ from birder.data.datasets.coco import MosaicType
 from birder.data.datasets.directory import tv_loader
 from birder.data.transforms.classification import get_rgb_stats
 from birder.data.transforms.classification import reverse_preset
+from birder.data.transforms.detection import MULTISCALE_STEP
 from birder.data.transforms.detection import AugType
 from birder.data.transforms.detection import InferenceTransform
 from birder.data.transforms.detection import training_preset
@@ -44,6 +45,7 @@ def show_det_iterator(args: argparse.Namespace) -> None:
             args.multiscale,
             args.max_size,
             args.multiscale_min_size,
+            args.multiscale_step,
         )
         mosaic_transforms = training_preset(
             args.size,
@@ -54,6 +56,7 @@ def show_det_iterator(args: argparse.Namespace) -> None:
             args.multiscale,
             args.max_size,
             args.multiscale_min_size,
+            args.multiscale_step,
             post_mosaic=True,
         )
         if args.mosaic_prob > 0.0:
@@ -163,7 +166,11 @@ def show_det_iterator(args: argparse.Namespace) -> None:
     else:
         if args.batch_multiscale is True:
             data_collate_fn: Any = BatchRandomResizeCollator(
-                offset, args.size, multiscale_min_size=args.multiscale_min_size
+                offset,
+                args.size,
+                size_divisible=args.multiscale_step,
+                multiscale_min_size=args.multiscale_min_size,
+                multiscale_step=args.multiscale_step,
             )
         else:
             data_collate_fn = collate_fn
@@ -263,17 +270,23 @@ def set_parser(subparsers: Any) -> None:
         help="allow variable image sizes while preserving aspect ratios",
     )
     subparser.add_argument("--multiscale", default=False, action="store_true", help="enable random scale per image")
-    subparser.add_argument(
-        "--multiscale-min-size",
-        type=int,
-        help="minimum short-edge size for multiscale lists (rounded up to nearest multiple of 32)",
-    )
     subparser.add_argument(
         "--batch-multiscale",
         default=False,
         action="store_true",
         help="enable random square resize once per batch (batch mode only, capped by max(--size))",
     )
+    subparser.add_argument(
+        "--multiscale-step",
+        type=int,
+        default=MULTISCALE_STEP,
+        help="step size for multiscale size lists and collator padding divisibility (size_divisible)",
+    )
+    subparser.add_argument(
+        "--multiscale-min-size",
+        type=int,
+        help="minimum short-edge size for multiscale lists (rounded up to nearest multiple of --multiscale-step)",
+    )
     subparser.add_argument(
         "--aug-type",
         type=str,

birder/tools/show_iterator.py

@@ -57,11 +57,11 @@ def show_iterator(args: argparse.Namespace) -> None:
     if args.wds is True:
         wds_path: str | list[str]
         if args.wds_info is not None:
-            (wds_path, dataset_size) = wds_args_from_info(args.wds_info, args.wds_split)
+            wds_path, dataset_size = wds_args_from_info(args.wds_info, args.wds_split)
             if args.wds_size is not None:
                 dataset_size = args.wds_size
         else:
-            (wds_path, dataset_size) = prepare_wds_args(args.data_path, args.wds_size, torch.device("cpu"))
+            wds_path, dataset_size = prepare_wds_args(args.data_path, args.wds_size, torch.device("cpu"))
 
         dataset = make_wds_dataset(
             wds_path,

birder/tools/similarity.py

@@ -32,7 +32,7 @@ def similarity(args: argparse.Namespace) -> None:
     device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
     logger.info(f"Using device {device}")
 
-    (net, (class_to_idx, signature, rgb_stats, *_)) = fs_ops.load_model(
+    net, (class_to_idx, signature, rgb_stats, *_) = fs_ops.load_model(
         device, args.network, tag=args.tag, epoch=args.epoch, inference=True, reparameterized=args.reparameterized
     )
 
@@ -53,7 +53,7 @@ def similarity(args: argparse.Namespace) -> None:
         for file_paths, inputs, _targets in inference_loader:
             # Predict
             inputs = inputs.to(device)
-            (_out, embedding) = classification.infer_batch(net, inputs, return_embedding=True)
+            _out, embedding = classification.infer_batch(net, inputs, return_embedding=True)
             embedding_list.append(embedding)  # type: ignore[arg-type]
             sample_paths.extend(file_paths)
 
@@ -64,7 +64,7 @@ def similarity(args: argparse.Namespace) -> None:
 
     toc = time.time()
     rate = len(dataset) / (toc - tic)
-    (minutes, seconds) = divmod(toc - tic, 60)
+    minutes, seconds = divmod(toc - tic, 60)
     logger.info(f"{int(minutes):0>2}m{seconds:04.1f}s to classify {len(dataset)} samples ({rate:.2f} samples/sec)")
 
     logger.info("Processing similarity...")
@@ -82,7 +82,7 @@ def similarity(args: argparse.Namespace) -> None:
         distance_arr = distance_matrix(tsne_embeddings_arr, tsne_embeddings_arr)
         distance_arr = squareform(distance_arr)
 
-    (sample_1, sample_2) = list(zip(*combinations(sample_paths, 2)))
+    sample_1, sample_2 = list(zip(*combinations(sample_paths, 2)))
     distance_df = pl.DataFrame(
         {
             "sample_1": sample_1,
@@ -97,7 +97,7 @@ def similarity(args: argparse.Namespace) -> None:
         args.limit = len(distance_df)
 
     for idx, pair in enumerate(distance_df[: args.limit].iter_rows(named=True)):
-        (fig, (ax1, ax2)) = plt.subplots(2, 1)
+        fig, (ax1, ax2) = plt.subplots(2, 1)
         ax1.imshow(Image.open(pair["sample_1"]))
         ax1.set_title(pair["sample_1"])
         ax2.imshow(Image.open(pair["sample_2"]))

birder/tools/stats.py

@@ -55,12 +55,12 @@ def directory_label_count(directory: str | Path) -> Counter[str]:
 
 def class_graph(args: argparse.Namespace) -> None:
     if args.detection_class_graph is True:
-        (label_count, _) = detection_object_count(Path(args.data_path))
+        label_count, _ = detection_object_count(Path(args.data_path))
     else:
         label_count = directory_label_count(args.data_path)
 
     total_count = sum(label_count.values())
-    (sorted_classes, sorted_count) = list(zip(*label_count.most_common()))
+    sorted_classes, sorted_count = list(zip(*label_count.most_common()))
 
     fig = plt.figure()
     ax = fig.add_subplot()
@@ -106,9 +106,7 @@ def set_size(_args: argparse.Namespace) -> None:
     )
 
     logger.info("---")
-    (training_detection_count, training_file_count) = detection_object_count(
-        settings.TRAINING_DETECTION_ANNOTATIONS_PATH
-    )
+    training_detection_count, training_file_count = detection_object_count(settings.TRAINING_DETECTION_ANNOTATIONS_PATH)
     if training_file_count > 0:
         logger.info(
             f"Detection training:   {training_file_count:,} samples containing "
@@ -117,7 +115,7 @@ def set_size(_args: argparse.Namespace) -> None:
             f"{sum(training_detection_count.values()) / training_file_count:.1f} objects per sample)"
         )
 
-    (validation_detection_count, validation_file_count) = detection_object_count(
+    validation_detection_count, validation_file_count = detection_object_count(
         settings.VALIDATION_DETECTION_ANNOTATIONS_PATH
     )
     if validation_file_count > 0:

birder/tools/voc_to_coco.py

@@ -32,7 +32,7 @@ def _create_annotation(
     annotation["image_id"] = image_id
 
     # Bounding box in (x, y, w, h) format
-    (xmin, ymin, xmax, ymax) = points
+    xmin, ymin, xmax, ymax = points
     assert xmax > xmin and ymax > ymin
     w = xmax - xmin
     h = ymax - ymin

birder/version.py

@@ -1 +1 @@
-__version__ = "v0.3.3"
+__version__ = "v0.4.1"

{birder-0.3.3.dist-info → birder-0.4.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: birder
-Version: 0.3.3
+Version: 0.4.1
 Summary: An open-source computer vision framework for wildlife image analysis, featuring state-of-the-art models for species classification and detection.
 Author: Ofer Hasson
 License-Expression: Apache-2.0
@@ -43,8 +43,8 @@ Requires-Dist: torch>=2.7.0
 Requires-Dist: torchvision
 Provides-Extra: dev
 Requires-Dist: altair~=5.5.0; extra == "dev"
-Requires-Dist: bandit~=1.9.2; extra == "dev"
-Requires-Dist: black~=25.12.0; extra == "dev"
+Requires-Dist: bandit~=1.9.3; extra == "dev"
+Requires-Dist: black~=26.1.0; extra == "dev"
 Requires-Dist: build~=1.4.0; extra == "dev"
 Requires-Dist: bumpver~=2025.1131; extra == "dev"
 Requires-Dist: captum~=0.7.0; extra == "dev"

birder-0.4.1.dist-info/RECORD

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{birder-0.3.3.dist-info → birder-0.4.1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.9.0)
+Generator: setuptools (80.10.1)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

birder/net/mobilenet_v3_small.py

@@ -1,43 +0,0 @@
-from typing import Any
-from typing import Optional
-
-from birder.model_registry import registry
-from birder.net.mobilenet_v3_large import MobileNet_v3_Large
-
-
-# pylint: disable=invalid-name
-class MobileNet_v3_Small(MobileNet_v3_Large):
-    def __init__(
-        self,
-        input_channels: int,
-        num_classes: int,
-        *,
-        config: Optional[dict[str, Any]] = None,
-        size: Optional[tuple[int, int]] = None,
-    ) -> None:
-        super().__init__(input_channels, num_classes, config=config, size=size, large=False)
-
-
-registry.register_model_config("mobilenet_v3_small_0_25", MobileNet_v3_Small, config={"alpha": 0.25})
-registry.register_model_config("mobilenet_v3_small_0_5", MobileNet_v3_Small, config={"alpha": 0.5})
-registry.register_model_config("mobilenet_v3_small_0_75", MobileNet_v3_Small, config={"alpha": 0.75})
-registry.register_model_config("mobilenet_v3_small_1_0", MobileNet_v3_Small, config={"alpha": 1.0})
-registry.register_model_config("mobilenet_v3_small_1_25", MobileNet_v3_Small, config={"alpha": 1.25})
-registry.register_model_config("mobilenet_v3_small_1_5", MobileNet_v3_Small, config={"alpha": 1.5})
-registry.register_model_config("mobilenet_v3_small_1_75", MobileNet_v3_Small, config={"alpha": 1.75})
-registry.register_model_config("mobilenet_v3_small_2_0", MobileNet_v3_Small, config={"alpha": 2.0})
-
-registry.register_weights(
-    "mobilenet_v3_small_1_0_il-common",
-    {
-        "description": "MobileNet v3 small (1.0 multiplier) model trained on the il-common dataset",
-        "resolution": (256, 256),
-        "formats": {
-            "pt": {
-                "file_size": 7.4,
-                "sha256": "ac53227f7513fd0c0b5204ee57403de2ab6c74c4e4d1061b9168596c6b5cea48",
-            }
-        },
-        "net": {"network": "mobilenet_v3_small_1_0", "tag": "il-common"},
-    },
-)