bioregistry 0.13.18__py3-none-any.whl → 0.13.19__py3-none-any.whl

{bioregistry-0.13.18.dist-info → bioregistry-0.13.19.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.18
+Version: 0.13.19
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt
@@ -53,11 +53,11 @@ Requires-Dist: tabulate ; extra == 'align'
 Requires-Dist: defusedxml ; extra == 'align'
 Requires-Dist: class-resolver ; extra == 'align'
 Requires-Dist: fairsharing-client>=0.1.0 ; extra == 'align'
-Requires-Dist: pandas ; extra == 'align'
+Requires-Dist: pandas<3.0 ; extra == 'align'
 Requires-Dist: matplotlib ; extra == 'charts'
 Requires-Dist: matplotlib-venn ; extra == 'charts'
 Requires-Dist: seaborn ; extra == 'charts'
-Requires-Dist: pandas ; extra == 'charts'
+Requires-Dist: pandas<3.0 ; extra == 'charts'
 Requires-Dist: jinja2 ; extra == 'charts'
 Requires-Dist: sphinx>=8 ; extra == 'docs'
 Requires-Dist: sphinx-rtd-theme>=3.0 ; extra == 'docs'
@@ -70,13 +70,13 @@ Requires-Dist: rdflib-jsonld ; extra == 'export'
 Requires-Dist: ndex2 ; extra == 'export'
 Requires-Dist: more-itertools ; extra == 'gha'
 Requires-Dist: click-default-group ; extra == 'health'
-Requires-Dist: pandas ; extra == 'health'
+Requires-Dist: pandas<3.0 ; extra == 'health'
 Requires-Dist: tabulate ; extra == 'health'
 Requires-Dist: pyyaml ; extra == 'health'
 Requires-Dist: jinja2 ; extra == 'health'
-Requires-Dist: pandas ; extra == 'mapping-checking'
+Requires-Dist: pandas<3.0 ; extra == 'mapping-checking'
 Requires-Dist: sentence-transformers ; extra == 'mapping-checking'
-Requires-Dist: pandas ; extra == 'paper-ranking'
+Requires-Dist: pandas<3.0 ; extra == 'paper-ranking'
 Requires-Dist: scikit-learn ; extra == 'paper-ranking'
 Requires-Dist: tabulate ; extra == 'paper-ranking'
 Requires-Dist: pubmed-downloader>=0.0.12 ; extra == 'paper-ranking'

{bioregistry-0.13.18.dist-info → bioregistry-0.13.19.dist-info}/RECORD

@@ -3,7 +3,7 @@ bioregistry/__main__.py,sha256=hfyt3xyxKdAp969VpjqhTMdpG7CxtDCA7y8bYc0-ZKU,92
 bioregistry/analysis/__init__.py,sha256=z0F0QjavayAY0-otbu92g1wR3KK5ZmRNS24r76nxVJI,41
 bioregistry/analysis/bioregistry_diff.py,sha256=0GEjk3OgjToUKO0nH4RmFUpZl8L2rikSy0qDDtqB2o4,10278
 bioregistry/analysis/mapping_checking.py,sha256=QM5r2p67httXGd-LcinjwCyVmL4_d9pYSu98RrspsE8,8009
-bioregistry/analysis/paper_ranking.py,sha256=YUupzOKpOpMLmRqXKgEPDe72zoIRYVu5Fmn5qqbgXgY,19711
+bioregistry/analysis/paper_ranking.py,sha256=O8968BUsIwoJtWzfB9y3mPDSnNZ2Nd5LztshKZIxyOg,19755
 bioregistry/app/__init__.py,sha256=Y2NMn6HNPdg398xdizYaS2tjSk4JX_luU1qehve5jXk,23
 bioregistry/app/api.py,sha256=1ad-szASI6C7dxpqZfPGEZdf2HEJ6gk470xwyljiPrw,19080
 bioregistry/app/cli.py,sha256=Zu3Kqf8TGONpxuWSfjLBSz-ohJVju1gugo5SZGjNhFQ,2306
@@ -102,7 +102,7 @@ bioregistry/curation/suggest_author_curation.py,sha256=ecD9v6yOx5LbTAi0_wNhk9fKO
 bioregistry/curation/suggest_uniprot_providers.py,sha256=b9_LZ9hjavJ0iigGThZJuH_wEjVWCu3njJWdwvBSXj4,835
 bioregistry/data/README.md,sha256=vlWWGV0jOmcm4wu1hGUq01jZa41rDwfqIDffVs2somg,1796
 bioregistry/data/__init__.py,sha256=6oMVGRsmEoVd5caRr1Q_Zk-u3rOj382rIi2AoGMEVc8,41
-bioregistry/data/bioregistry.json,sha256=PtIbnYyQPdNpVLf0Dw1Y0Ov03vnzOUiHCBKvZ_EY8hU,6410238
+bioregistry/data/bioregistry.json,sha256=iMVDLMaF4yuTTcMyIgXnf4DJ96e-PIorQCwXa42V1qU,6423968
 bioregistry/data/collections.json,sha256=-v40j9JXvijqoMDBGFOMY-tQC_AddlfFayVI5c-U4b0,46118
 bioregistry/data/contexts.json,sha256=nUHDGrZe2oF9P5I8CeMoEYsaUfwNweTc5n7t8Hj2iJw,1436
 bioregistry/data/curated_mappings.sssom.tsv,sha256=n5l_fOSDmzV23gUQhgnefdqqJGyLwyH7YE9FGGIn3Gc,45034
@@ -122,22 +122,22 @@ bioregistry/export/warnings_export.py,sha256=LH3YsTzlJfi_KYEEvU0HzGScp0EuR0pei7p
 bioregistry/export/yaml_export.py,sha256=08W93quZWirWv5TltvgltKxWbF1nMlzrlWsVocc7T8k,1308
 bioregistry/external/__init__.py,sha256=cjcfwBprqBx_X8IJh6Vug6gGgbCf5vLcJAe4Ql_0Cuc,2989
 bioregistry/external/aberowl/__init__.py,sha256=5xOVxU7SMXlTvI0zWi6cMbiga1jVXD0Joh-N_rBH1As,2475
-bioregistry/external/aberowl/processed.json,sha256=TlXOjRGI066P5Jo-y2T4_B0CDKWGu8QkvtMTms_iQbI,756681
+bioregistry/external/aberowl/processed.json,sha256=DqERHRFb3qnR7612RdIIlE1sgWSIH2Jgrf0dtNOWp94,767590
 bioregistry/external/align.py,sha256=x2N910eaTHFR5BnvwuWRC9Me2z2PsKPaBeK78inoujU,2101
 bioregistry/external/alignment_utils.py,sha256=CcSFc6bMiyTiLsASKsSVpaEBoK5UC36xIffTdzcLvw8,11752
 bioregistry/external/bartoc/__init__.py,sha256=lbtUoxCLyWFIMkmIxPA7TTmbgoDEQTfd0GQcclBtEcU,3173
-bioregistry/external/bartoc/processed.json,sha256=-f2xeGUuBwNl95xxZ25KiBTIyhTdXCdd21ARqyRjctg,2683633
+bioregistry/external/bartoc/processed.json,sha256=fWzfY18l8ROkd6HoJD7_bHq_BzSFuRvO5wJ20cuR9UU,2684648
 bioregistry/external/biocontext/__init__.py,sha256=gLytdKfeN2dFIW_ugl4W5hJetfciMs171uzeMiHMCdo,2589
 bioregistry/external/biocontext/processed.json,sha256=XRUGK63S5OVRBS0BrbUjepsFI8NPVVVZFmeWbbfXWUQ,74913
 bioregistry/external/biolink/__init__.py,sha256=o57Dhg5Z65oYYe-RU0S6q0OKjc8p-uTk3s3iqroAUXM,2613
 bioregistry/external/biolink/processed.json,sha256=5mpJHJtpGyI7J0RtK_CEtG1eJ3HVPrVv3FZyz0OuO0I,10789
 bioregistry/external/biolink/processing_biolink.json,sha256=lITU-JFBbXU0FEQR3q1Y9A8E_2YxRHyHnzogqadGKtI,508
 bioregistry/external/bioportal/__init__.py,sha256=zXL7D5eNPUHnlseEiIsuGQk66RnIE5QWXYDLDj2Lq74,7645
-bioregistry/external/bioportal/agroportal.json,sha256=7k3-xHjIZs2JS6fnrZqwtUAe0XHEK9FohNJgQKne2Bg,223438
+bioregistry/external/bioportal/agroportal.json,sha256=jTKtyRnXKX9s0TuXgcYGqvOHYJQ8D3FzZrcI6NLYgm8,224652
 bioregistry/external/bioportal/agroportal.py,sha256=Y5KGAkLqSoSS9czW0oFe7CNLzsiByLxtC3LLb5HB3XQ,147
-bioregistry/external/bioportal/bioportal.json,sha256=TgHHP62EUu_4PBhEVWMA_ehfhRh9TehvG0nZRXIpKNI,769755
+bioregistry/external/bioportal/bioportal.json,sha256=Ad4F-yjIz4SXpESYYfDUmyQ1GO3-C35wK0hLG7bqbqI,784001
 bioregistry/external/bioportal/bioportal.py,sha256=8YSiaisYPPc3TkxE7GPrZz2s-mRjV6nXAXzmJ5U0NBs,1011
-bioregistry/external/bioportal/ecoportal.json,sha256=VqiF03F7Vm63LiuNxzfrRhRaVyWLGyzRvfH7peZKs40,61101
+bioregistry/external/bioportal/ecoportal.json,sha256=xrFRmaCQtvxjE1ywxqPt5XZP_feot0vlD_Zb2eG0bmc,63660
 bioregistry/external/bioportal/ecoportal.py,sha256=WqjiWyBlKHayLt8PtEkem4TqtcBc8GRp9mYP-msIHMY,144
 bioregistry/external/cellosaurus/__init__.py,sha256=2RceJBV7x7gxAMfXHYzKD3_2eJz8qskV-rk-lsjNFXo,3469
 bioregistry/external/cellosaurus/processed.json,sha256=NzIj74aGhHrgiE4toAYjXdYPYv2M8bb2cSxTDXuqoBo,33272
@@ -148,16 +148,16 @@ bioregistry/external/cropoct/processed.json,sha256=EHkMx_ywPXsGtXSz9DK-DWDMXEi4_
 bioregistry/external/edam/__init__.py,sha256=4rkiMRlFjfEcYXKx8TM8KWPV2H58kxr0cavJoK2LrbQ,1715
 bioregistry/external/edam/processed.json,sha256=3jmBdNwwCXtXZw4jf40riBOHC_HE2GAnYIcnStm4N0k,45513
 bioregistry/external/fairsharing/__init__.py,sha256=bk4EfQIA40mU2xkVYq_Ipl4Mnq79qUVBMfekxU4woqE,5364
-bioregistry/external/fairsharing/processed.json,sha256=W7AHaHCqivPc213KBXdiQdZFUNxvLvUlMddkszWTftk,914872
+bioregistry/external/fairsharing/processed.json,sha256=W0nOM739MPdByFEzKP_H8IM7k-AhYclURmWu0RaH94Q,917483
 bioregistry/external/go/__init__.py,sha256=ZrVhZfi0uowNWxymNarFm8TeqxFFRE1HzXB-5kBcz98,4104
 bioregistry/external/go/processed.json,sha256=-LtkaUvJQxOomYFyt4-rpWvrbcrAlhUOfyjhbIWp0-4,146051
 bioregistry/external/go/processing_go.json,sha256=fuubtH1RyiBWFrMnZq9iT83dlN_uFtyX5uZPVlfrwfo,137
 bioregistry/external/hl7/OID_Report.csv,sha256=7Z2mu6gRb-KIEIkniwfcF_KD3ycL6SBfPEBDOxRlJlI,319976
 bioregistry/external/hl7/__init__.py,sha256=YfwcyCp1IzdxsCVVw9Dy77NS3u4q_T0DeyQrTjNB7FQ,2131
-bioregistry/external/integbio/__init__.py,sha256=1damv1id7gp5tQz_zGITetaZWkJXJAehTtQCgl8jtcg,5343
+bioregistry/external/integbio/__init__.py,sha256=Bpsf4-rgPixVa-_YW0IGYuLVkQ9xRpY1DVKd_Joiuz8,5268
 bioregistry/external/integbio/processed.json,sha256=ZuuwK_bUSbc2Saro8nSrDnShD0sRKSs2P4ups74u8EQ,1802230
 bioregistry/external/lov/__init__.py,sha256=18vZoxRhvX6UqQLAHmyHEMrIB_8Xe4KSGXSNd_PdCw0,2655
-bioregistry/external/lov/processed.json,sha256=rOwow8lO53WSg4JsgXfZw3IRO658-M-PY2infvrklT8,482899
+bioregistry/external/lov/processed.json,sha256=QGqiN0MqokCyRbcI_TmX-JvDaYrQYioJRnp1U4VkMko,483717
 bioregistry/external/miriam/__init__.py,sha256=SJMcH2Nh00tT0uCfl4yYCgsi3XC1OD6w1JnAZnEzzJ0,4768
 bioregistry/external/miriam/processed.json,sha256=0IUtSsNECP-4GVbz6Ol3QIFUbsn-m-fZWvjqnV2P10M,596526
 bioregistry/external/n2t/__init__.py,sha256=hQhp_yhOMvXANuuwSDniTysHkwnx61LpTca-E5b9aMY,2954
@@ -165,9 +165,9 @@ bioregistry/external/n2t/processed.json,sha256=2SRCY0OnRTjoSV1t6by5xEaqD_wDVK3xG
 bioregistry/external/ncbi/__init__.py,sha256=276xtZL1b2s9vS8voXuaNybQX6sEtoKyViK4WAfuDb8,5573
 bioregistry/external/ncbi/processed.json,sha256=2bnV32V-vMJmpQDMTEQkdhG28A3Vvfs_67mI2ZPqePY,18072
 bioregistry/external/obofoundry/__init__.py,sha256=XWZpAfCCJCtOxFUvA3xRxgMaFLerHQZoUzByq-AQ1mg,5351
-bioregistry/external/obofoundry/processed.json,sha256=Cpn7kcOGN_CF4pOY4wTa0VxJ_bS5EFFoQ9Lwbg-tQTE,225721
+bioregistry/external/obofoundry/processed.json,sha256=a3fUySNqaHNh_hfVmuHpnqJq-jYplwhvb_QhqK0x97c,225799
 bioregistry/external/ols/__init__.py,sha256=EpX_3gpB6Lc5PpqXF_tvAmr57fAVbBtQqswDlrfTC7w,11541
-bioregistry/external/ols/processed.json,sha256=zGgFflvO4OYTG0bf07D3Ay_5ZK2Ayvd7qBPBAGxQdBw,162226
+bioregistry/external/ols/processed.json,sha256=QoY4OHFr0PdQyxFKk_k_xLzOYFdItNe5p0q9tfcc7EY,163145
 bioregistry/external/ols/processing_ols.json,sha256=nxKL7Mi12vmo7v2LWSx_Ryd8U2bPuebN1kBW1FYHSPs,35976
 bioregistry/external/ols/tib-processed.json,sha256=LQvtTlcAavxLirqkylBkhlcTsG9JtXBbB4eNQ7KoKtI,198055
 bioregistry/external/ols/tib-processing-config.json,sha256=qQsdTmQTnM-ZCLj-rmztJV25lrJqQcg9esQbYGVB1f4,29
@@ -178,12 +178,12 @@ bioregistry/external/pathguide/__init__.py,sha256=Q6p01FuBU-PxSJUFrZP-fqE_ZOV_lM
 bioregistry/external/prefixcommons/__init__.py,sha256=Nka5nbxg0Nh5YSbvYut2p6GtxXXA5dnMt_HPRlnXgCA,9154
 bioregistry/external/prefixcommons/processed.json,sha256=RlHKDfPca_f38FOwx7UTU_HUlP4Zuq6_jvLuTbx9wh0,514876
 bioregistry/external/re3data/__init__.py,sha256=XyKol_Hhej4kbc56d6COc6MjoUBVrThrOeMurzciRwM,6578
-bioregistry/external/re3data/processed.json,sha256=r7Vt585Yme2wLrCZVVGSDnqPyP-ZJ0Dfne6hb_yOpyk,2736304
+bioregistry/external/re3data/processed.json,sha256=ddkwHfHpbh4dmk_dzOz7jjNRQjb_LMKVaipRZ1lLgl8,2742676
 bioregistry/external/rrid/__init__.py,sha256=NEKpP5N2xPt5K4hw8fsDEbOmwfh8yLoHC4Yl50iSbVQ,3780
 bioregistry/external/togoid/__init__.py,sha256=AUZn69q0Di7o5yb11kGyi8QF9RIFkgiAvZkgnjkmfHo,3506
 bioregistry/external/togoid/processed.json,sha256=h2LeypcVdJvL6wByOo8lJeLCFr4_UQb1EfVR6FjJXEg,81494
 bioregistry/external/uniprot/__init__.py,sha256=XUJz7d-xem99uPXBb5jI8vfEl1jZuGHShEOhwfOrMeU,3641
-bioregistry/external/uniprot/processed.json,sha256=mmj_Kr21KKBgL0SJHUg3aFCOVdlgUe5z8GcDZI0Jwyw,67603
+bioregistry/external/uniprot/processed.json,sha256=J9MpUQcYxL2NKd7WhLm2aNyegLKn1IKPpft-Gb7inBM,67577
 bioregistry/external/wikidata/__init__.py,sha256=zEcf5vwU28MZ39Oa4x93nToxtO9M1_TqSCKyhUvUA74,11832
 bioregistry/external/wikidata/processed.json,sha256=8f2xlwQY0CSvbtwVuss10SZ3_C3uF58oXPr79ww6JWo,368769
 bioregistry/external/zazuko/__init__.py,sha256=wr7zWIO7rwEsTKG39GfKj78t7vXebnLAht-dubu7Ol8,1219
@@ -221,8 +221,8 @@ bioregistry/utils.py,sha256=UtoHc3XzaUxv5aayJkcGyE5qjYP36SjvnVGt9sG2X-U,9207
 bioregistry/validate/__init__.py,sha256=ffUYuZYBcPGl1Ggw65DB9NZO4ma1tlsflRJRpKE4JWw,28
 bioregistry/validate/cli.py,sha256=nDCdMfANsxUZ-l1LTmcHgnDRr3uXqqgy6zr0uwfSjwI,3745
 bioregistry/validate/utils.py,sha256=7U2az-Y5IzdNEYmTQJSbfemdHZG0mh4k7nP61rpVtjI,10588
-bioregistry/version.py,sha256=na9AGQ9yJwoyrVa4YRaJJSYVX-02zNst4eI-nbstFMA,1018
-bioregistry-0.13.18.dist-info/WHEEL,sha256=XV0cjMrO7zXhVAIyyc8aFf1VjZ33Fen4IiJk5zFlC3g,80
-bioregistry-0.13.18.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
-bioregistry-0.13.18.dist-info/METADATA,sha256=0D-JMpLgBzraOffZzjSTa9LeVpWMQ_iufZTUOyQsnOo,36840
-bioregistry-0.13.18.dist-info/RECORD,,
+bioregistry/version.py,sha256=yO-Eop-4mq_vRIlCymNoTnkigbmaK_VH7W4iiQKoSPc,1018
+bioregistry-0.13.19.dist-info/WHEEL,sha256=jROcLULcdzropX2J55opKw4UHhPFREZax2XzS-Mvpxs,80
+bioregistry-0.13.19.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
+bioregistry-0.13.19.dist-info/METADATA,sha256=cjyfxN9aIcQWL6vBXyLGG5zXrlyhnW7VvN7_gEpUCGg,36860
+bioregistry-0.13.19.dist-info/RECORD,,

{bioregistry-0.13.18.dist-info → bioregistry-0.13.19.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: uv 0.9.26
+Generator: uv 0.10.0
 Root-Is-Purelib: true
 Tag: py3-none-any