bioregistry 0.13.18__py3-none-any.whl → 0.13.19__py3-none-any.whl

bioregistry/external/re3data/processed.json

@@ -380,7 +380,7 @@
     "description": "The Chandra Data Archive (CDA) plays a central role in the operation of the Chandra X-ray Center (CXC) by providing support to the astronomical community in accessing Chandra data. Its primary role is one of storage and distribution of all data products including those that users of the observatory need to perform their scientific studies using Chandra data.\nThe CDA offers access to digital archives through powerful query engines, including VO-compliant interfaces. The CDA also serves as a permanent storage repository of contributed data products by authors who have processed images or other pertinent and valuable datasets that are essential to their publications.",
     "doi": "10.17616/R3201S",
     "homepage": "https://cxc.cfa.harvard.edu/cda/",
-    "name": "The Chandra Data Archive",
+    "name": "Chandra Data Archive",
     "prefix": "r3d100010035",
     "synonyms": [
       "CDA"
@@ -434,7 +434,7 @@
     ]
   },
   "r3d100010055": {
-    "description": "Presented is information on changes in weather and climate extremes, as well as the daily dataset needed to monitor and analyse these extremes. map of participating countries.\nToday, ECA&D is receiving data from 59 participants for 62 countries and the ECA dataset contains 33265 series of observations for 12 elements at 7512 meteorological stations throughout Europe and the Mediterranean (see Daily data > Data dictionary). 51% of these series is public, which means downloadable from this website for non-commercial research. Participation to ECA&D is open to anyone maintaining daily station data",
+    "description": "Presented is information on changes in weather and climate extremes, as well as the daily dataset needed to monitor and analyse these extremes. map of participating countries.\nToday, ECA&D is receiving data from 89 participants for 65 countries and the ECA dataset contains 102396 series of observations for 13 elements at 25167 meteorological stations throughout Europe and the Mediterranean (see Daily data > Data dictionary). 85% of these series is public, which means downloadable from this website for non-commercial research. Participation to ECA&D is open to anyone maintaining daily station data.",
     "doi": "10.17616/R30015",
     "homepage": "https://www.ecad.eu/",
     "name": "European Climate Assessment & Dataset project",
@@ -658,7 +658,7 @@
     ]
   },
   "r3d100010076": {
-    "description": "<<<!!!<<< This entry is depricated, the datahad been available at https://maxim.ucsd.edu/cbeoportal. >>>!!!>>> The Chesapeake Bay Environmental Observatory (CBEO) is a prototype to demonstrate the utility of newly developed Cyberinfrastructure (CI) components for transforming environmental research, education, and management. The CBEO project uses a specific problem of water quality (hypoxia) as means of directly involving users and demonstrating the prototype’s utility. \nData from the Test Bed are being brought into a CBEO Portal on a National Geoinformatics Grid developed by the NSF funded GEON. This is a cyberinfrastructure netwrok that allows users access to datasets as well as the tools with which to analyze the data.\nCurrently, Test Bed data avaialble on the CBEO Portal includes Water Quality Model output and water quality monitorig data from the Chesapeake Bay Program's CIMS database. This data is also available as aggregated \"data cubes\". Avaialble tools include the Data Access System for Hydrology (DASH), Hydroseek and an online R-based interpolator.",
+    "description": "<<<!!!<<< This entry is deprecated, the data is available at https://maxim.ucsd.edu/cbeoportal. >>>!!!>>> The Chesapeake Bay Environmental Observatory (CBEO) is a prototype to demonstrate the utility of newly developed Cyberinfrastructure (CI) components for transforming environmental research, education, and management. The CBEO project uses a specific problem of water quality (hypoxia) as means of directly involving users and demonstrating the prototype’s utility. \nData from the Test Bed are being brought into a CBEO Portal on a National Geoinformatics Grid developed by the NSF funded GEON. This is a cyberinfrastructure netwrok that allows users access to datasets as well as the tools with which to analyze the data.\nCurrently, Test Bed data avaialble on the CBEO Portal includes Water Quality Model output and water quality monitorig data from the Chesapeake Bay Program's CIMS database. This data is also available as aggregated \"data cubes\". Avaialble tools include the Data Access System for Hydrology (DASH), Hydroseek and an online R-based interpolator.",
     "doi": "10.17616/R3HS3H",
     "homepage": "https://cbeo.communitymodeling.org/",
     "name": "Chesapeake Bay Environmental Observatory",
@@ -673,7 +673,7 @@
   "r3d100010078": {
     "description": "Data.gov increases the ability of the public to easily find, download, and use datasets that are generated and held by the Federal Government. Data.gov provides descriptions of the Federal datasets (metadata), information about how to access the datasets, and tools that leverage government datasets",
     "doi": "10.17616/R3D30J",
-    "homepage": "https://www.data.gov/",
+    "homepage": "https://data.gov/",
     "license": "other",
     "name": "Data.gov",
     "prefix": "r3d100010078",
@@ -867,7 +867,7 @@
   "r3d100010097": {
     "description": "The Mansfeld's World Database of Agriculture and Horticultural Crops is an online database. As a contribution to the project \"Federal Information System on Genetic Resources\" (BIG, http://www.big-flora.de/). It reflects the contents of \"Mansfeld's Encyclopedia of Agricultural and Horticultural Crops\" (Hanelt and IPK 2001) and contains information on 6,100 crop plant species, excluding forestry and ornamental plants. Each species entry provides nomenclature and synonymy, common names in different languages, spontaneous distribution and regions of cultivation, uses, images, references, but also the ancestral species and notes on the phylogeny, variation and history.",
     "doi": "10.17616/R32P4T",
-    "homepage": "https://mansfeld.ipk-gatersleben.de/apex/f?p=185:3",
+    "homepage": "https://mansfeld.ipk-gatersleben.de/",
     "license": "Copyrights",
     "name": "Mansfeld's World Database of Agriculture and Horticultural Crops",
     "prefix": "r3d100010097",
@@ -899,7 +899,7 @@
   "r3d100010101": {
     "description": "MorphoBank is a web application with tools and archives for evolutionary research, specifically systematics (the science of determining the evolutionary relationships among species). Study of the phenotype, which is often visually-based, is central to contemporary systematics and taxonomic research. MorphoBank was developed specifically to provide much needed tools for the expansion and modernization of phylogenetic work on the phenotype",
     "doi": "10.17616/R3PC7F",
-    "homepage": "https://morphobank.org/",
+    "homepage": "https://www.morphobank.org/",
     "license": "CC",
     "name": "MorphoBank",
     "prefix": "r3d100010101",
@@ -921,7 +921,7 @@
     ]
   },
   "r3d100010103": {
-    "description": "MassBank is the first public repository of mass spectral data for sharing them among scientific research community.   MassBank data are useful for the chemical identification and structure elucidation of chemical comounds detected by mass spectrometry.MassBank system is originally designed for public sharing of reference mass spectra for metabolite identification. It is also useful for their in-house or local sharing. Recently it finds another application; sharing mass spectra of unknown metabolites for metabolite profiling. The IPB is operating the first european MassBank site, that is part of the consortial MassBank Project. You can access both the set of IPB Tandem-MS and Ion Trap spectra, as well as the other massbank sites.",
+    "description": "MassBank is the first public repository of mass spectral data for sharing them among scientific research community.  MassBank data are useful for the chemical identification and structure elucidation of chemical comounds detected by mass spectrometry. MassBank system is originally designed for public sharing of reference mass spectra for metabolite identification. It is also useful for their in-house or local sharing. Recently it finds another application; sharing mass spectra of unknown metabolites for metabolite profiling. The IPB is operating the first european MassBank site, that is part of the consortial MassBank Project. You can access both the set of IPB Tandem-MS and Ion Trap spectra, as well as the other massbank sites.",
     "doi": "10.17616/R3DW27",
     "homepage": "https://msbi.ipb-halle.de/MassBank/",
     "license": "CC",
@@ -1050,7 +1050,7 @@
     ]
   },
   "r3d100010114": {
-    "description": "Attention!\nData sets are not updated anymore.\nPlease, visit the BonaRes Repositor​ium​ for new datasets.\nOpen Research Data provides quality assessed data and their metadata such as context information on measurement objectives, equipment, methods, testing and investigation areas. The purpose of the repository is to secure quality, integrity and long-term availability of landscape and ecosystem research data as well as to enhance accessibility of free data from ZALF long-term monitoring campaigns, landscape laboratories (Agro-ScapeLabs), field trials and experiments.\nThe Leibniz Centre for Agricultural Landscape Research (ZALF) explores ecosystems in agricultural landscapes and the development of ecologically and economically viable land use systems. ZALF combines scientific expertise from agricultural science, geosciences, biosciences and socio-economics.",
+    "description": "<<<!!!<<< Attention! Data sets are not updated anymore. Please, visit the BonaRes Repositor​ium​ for new datasets. https://www.re3data.org/repository/r3d100013470 >>>!!!>>>\nOpen Research Data provides quality assessed data and their metadata such as context information on measurement objectives, equipment, methods, testing and investigation areas. The purpose of the repository is to secure quality, integrity and long-term availability of landscape and ecosystem research data as well as to enhance accessibility of free data from ZALF long-term monitoring campaigns, landscape laboratories (Agro-ScapeLabs), field trials and experiments.\nThe Leibniz Centre for Agricultural Landscape Research (ZALF) explores ecosystems in agricultural landscapes and the development of ecologically and economically viable land use systems. ZALF combines scientific expertise from agricultural science, geosciences, biosciences and socio-economics.",
     "doi": "10.17616/R34G64",
     "homepage": "https://open-research-data.zalf.de/default.aspx",
     "name": "Open Research Data",
@@ -1126,7 +1126,7 @@
   "r3d100010121": {
     "description": "The PDS archives and distributes scientific data from NASA planetary missions, astronomical observations, and laboratory measurements. The PDS is sponsored by NASA's Science Mission Directorate. Its purpose is to ensure the long-term usability of NASA data and to stimulate advanced research",
     "doi": "10.17616/R37593",
-    "homepage": "https://pds.nasa.gov/",
+    "homepage": "https://pds.mcp.nasa.gov/portal/",
     "name": "PDS",
     "prefix": "r3d100010121",
     "synonyms": [
@@ -1173,7 +1173,7 @@
   "r3d100010126": {
     "description": "The GISAID Initiative promotes the international sharing of all influenza virus sequences, related clinical and epidemiological data associated with human viruses, and geographical as well as species-specific data associated with avian and other animal viruses, to help researchers understand how the viruses evolve, spread and potentially become pandemics. \n*** GISAID does so by overcoming disincentives/hurdles or restrictions, which discourage or prevented sharing of influenza data prior to formal publication.\n*** The Initiative ensures that open access to data in GISAID is provided free-of-charge and to everyone, provided individuals identify themselves and agree to uphold the GISAID sharing mechanism governed through its Database Access Agreement. GISAID calls on all users to agree to the basic premise of upholding scientific etiquette, by acknowledging the originating laboratories providing the specimen and the submitting laboratories who generate the sequence data, ensuring fair exploitation of results derived from the data, and that all users agree that no restrictions shall be attached to data submitted to GISAID, to promote collaboration among researchers on the basis of open sharing of data and respect for all rights and interests.",
     "doi": "10.17616/R3Q59F",
-    "homepage": "https://www.gisaid.org/",
+    "homepage": "https://gisaid.org/",
     "license": "Copyrights",
     "name": "GISAID",
     "prefix": "r3d100010126",
@@ -1393,14 +1393,13 @@
     "description": "The CLARIN­/Text+ repository at the Saxon Academy of Sciences and Humanities in Leipzig offers long­term preservation of digital resources, along with their descriptive metadata. The mission of the repository is to ensure the availability and long­term preservation of resources, to preserve knowledge gained in research, to aid the transfer of knowledge into new contexts, and to integrate new methods and resources into university curricula. Among the resources currently available in the Leipzig repository are a set of corpora of the Leipzig Corpora Collection (LCC), based on newspaper, Wikipedia and Web text. Furthermore several REST-based webservices are provided for a variety of different NLP-relevant tasks\nThe repository is part of the CLARIN infrastructure and part of the NFDI consortium Text+. It is operated by the Saxon Academy of Sciences and Humanities in Leipzig.",
     "doi": "10.17616/R38309",
     "homepage": "https://repo.data.saw-leipzig.de/en",
-    "name": "Repository CLARIN Centre Leipzig",
+    "name": "Repository SAW Leipzig",
     "prefix": "r3d100010147",
     "synonyms": [
       "CLARIN repository at the Saxon Academy of Sciences and Humanities",
-      "Leipzig Corpora Collection",
       "Repositorium der Sächsischen Akademie der Wissenschaften zu Leipzig",
-      "SAW",
-      "Text+ centre at the Saxon Academy of Sciences and Humanities"
+      "Text+ centre at the Saxon Academy of Sciences and Humanities",
+      "formerly: Repository CLARIN Centre Leipzig"
     ]
   },
   "r3d100010148": {
@@ -1418,7 +1417,7 @@
   "r3d100010149": {
     "description": "The Longitudinal Aging Study Amsterdam (LASA) at the VU University and VU University Medical Centre is initiated by the Ministry of Health, Welfare and Sports in 1991 to determine predictors and consequences of ageing. LASA focuses on, physical, emotional, cognitive and social functioning in late life, the connections between these aspects, and the changes that occur in the course of time",
     "doi": "10.17616/R30K5J",
-    "homepage": "https://www.lasa-vu.nl/index.htm",
+    "homepage": "https://lasa-vu.nl/",
     "name": "Longitudinal Aging Study Amsterdam",
     "prefix": "r3d100010149",
     "synonyms": [
@@ -1438,7 +1437,7 @@
   "r3d100010151": {
     "description": "CINES is the French national long-term preservation service provider for Higher Education and Research: more than 20 institutions (universities, librairies, labs) archive their digital heritage at CINES so that it's preserved over time in a secure, dedicated environment. This includes documents such as PhD theses or publications, digitized ancient/rare books, satellite imagery, 3D/vidéos/image galleries, datasets, etc.",
     "doi": "10.17616/R3R30N",
-    "homepage": "https://www.cines.fr/en/preservation/",
+    "homepage": "https://www.cines.fr/non-classifiee/preservation/",
     "name": "PAC - Archiving Platform CINES",
     "prefix": "r3d100010151",
     "synonyms": [
@@ -1533,7 +1532,7 @@
   "r3d100010159": {
     "description": "SEDAC, the Socioeconomic Data and Applications Center, is one of the Distributed Active Archive Centers (DAACs) in the Earth Observing System Data and Information System (EOSDIS) of the U.S. National Aeronautics and Space Administration. SEDAC is a regular member of the World Data System and focuses on human interactions in the environment. Its mission is to develop and operate applications that support the integration of socioeconomic and Earth science data and to serve as an \"Information Gateway\" between the Earth and social sciences.",
     "doi": "10.17616/R3Q30B",
-    "homepage": "https://www.earthdata.nasa.gov/centers/sedac-daac",
+    "homepage": "https://search.earthdata.nasa.gov/search?q=CIESIN%20ESDIS",
     "name": "NASA Socioeconomic Data and Applications Center",
     "prefix": "r3d100010159",
     "synonyms": [
@@ -1817,7 +1816,7 @@
   "r3d100010187": {
     "description": "BEA produces economic accounts statistics that enable government and business decision-makers, researchers, and the American public to follow and understand the performance of the Nation's economy. To do this, BEA collects source data, conducts research and analysis, develops and implements estimation methodologies, and disseminates statistics to the public.",
     "doi": "10.17616/R3GC7K",
-    "homepage": "https://apps.bea.gov/itable/index.cfm",
+    "homepage": "https://www.bea.gov/itable/",
     "name": "US Department of Commerce, Bureau of Economic Analysis, Interactive Data Application",
     "prefix": "r3d100010187",
     "synonyms": [
@@ -1911,7 +1910,7 @@
     ]
   },
   "r3d100010196": {
-    "description": "CalSurv is a comprehensive information on West Nile virus, plague, malaria, Lyme disease, trench fever and other vectorborne diseases in California — where they are, where they’ve been, where they may be headed and what new diseases may be emerging.The CalSurv Web site serves as a portal or a single interface to all surveillance-related Web sites in California.",
+    "description": "CalSurv is a comprehensive information on West Nile virus, plague, malaria, Lyme disease, trench fever and other vectorborne diseases in California — where they are, where they’ve been, where they may be headed and what new diseases may be emerging. The CalSurv Web site serves as a portal or a single interface to all surveillance-related Web sites in California.",
     "doi": "10.17616/R39P40",
     "homepage": "https://vectorsurv.org/",
     "name": "VectorSurv",
@@ -1935,9 +1934,9 @@
     }
   },
   "r3d100010198": {
-    "description": "CDC.gov is the Centers for Disease Control and Prevention primary online communication channel. CDC.gov provides users with credible, reliable health information on Data and Statistics, Diseases and Conditions, Emergencies and Disasters, Environmental Health, Healthy Living, Injury, Violence and Safety,Life Stages and Populations, Travelers' Health, Workplace Safety and Health",
+    "description": "<<<!!!<<< This is archived content from the CDC website. The information here may be outdated and links may no longer function. Go to CDC Home for all other recent information. >>>!!!>>>\nCDC.gov is the Centers for Disease Control and Prevention primary online communication channel. CDC.gov provides users with credible, reliable health information on Data and Statistics, Diseases and Conditions, Emergencies and Disasters, Environmental Health, Healthy Living, Injury, Violence and Safety,Life Stages and Populations, Travelers' Health, Workplace Safety and Health",
     "doi": "10.17616/R3259J",
-    "homepage": "https://www.cdc.gov/DataStatistics/",
+    "homepage": "https://archive.cdc.gov/#/details?url=https://www.cdc.gov/datastatistics/index.html",
     "name": "Centers for Disease Control and Prevention, Data & Statistics",
     "prefix": "r3d100010198",
     "synonyms": [
@@ -1999,10 +1998,11 @@
     "description": "China’s digital forestry information platform was constructed according to the criteria and index system of forest sustainable management. the relative social, economic, and politic data was considered and collected, the database represents not only the current forestry development, but also the social, politic, and economic situations.",
     "doi": "10.17616/R30V0D",
     "homepage": "http://www.forestdata.cn/",
-    "name": "China Forestry Scientific Data Center",
+    "name": "National Forestry and Grassland Science Data Center",
     "prefix": "r3d100010204",
     "synonyms": [
-      "CFSDC"
+      "NFGDC",
+      "formerly: China Forestry Scientific Data Center (CFSDC)"
     ]
   },
   "r3d100010205": {
@@ -2030,7 +2030,7 @@
   "r3d100010207": {
     "description": "CIESIN is an interdisciplinary research and data center that provides access to a wide range of global data, associated documentation, and visualization and analysis tools to improve understanding of human interactions in the environment.",
     "doi": "10.17616/R31605",
-    "homepage": "https://www.ciesin.columbia.edu/data.html",
+    "homepage": "https://ciesin.columbia.edu/content/data",
     "name": "Center for International Earth Science Information Network",
     "prefix": "r3d100010207",
     "synonyms": [
@@ -2538,7 +2538,7 @@
   "r3d100010255": {
     "description": "ICPSR maintains a data archive of more than 350,000 files of research in the social and behavioral sciences. It hosts 23 specialized collections of data in education, aging, criminal justice, substance abuse, terrorism, and other fields.\nICPSR advances and expands social and behavioral research, acting as a global leader in data stewardship and providing rich data resources and responsive educational opportunities for present and future generations.",
     "doi": "10.17616/R3BC8Q",
-    "homepage": "https://www.icpsr.umich.edu/web/pages/",
+    "homepage": "https://www.icpsr.umich.edu/sites/icpsr/home",
     "license": "CC",
     "name": "Inter-university Consortium for Political and Social Research",
     "prefix": "r3d100010255",
@@ -2552,7 +2552,7 @@
   "r3d100010256": {
     "description": "Data Sharing for Demographic Research (DSDR) aims to serve the demographic community by archiving, preserving, and and disseminating data relevant for population studies",
     "doi": "10.17616/R36K6S",
-    "homepage": "https://www.icpsr.umich.edu/web/pages/DSDR/index.html",
+    "homepage": "https://www.icpsr.umich.edu/sites/dsdr/home",
     "name": "Data Sharing for Demographic Research",
     "prefix": "r3d100010256",
     "synonyms": [
@@ -2585,7 +2585,7 @@
   "r3d100010260": {
     "description": "The central mission of the NACJD is to facilitate and encourage research in the criminal justice field by sharing data resources. Specific goals include providing computer-readable data for the quantitative study of crime and the criminal justice system through the development of a central data archive, supplying technical assistance in the selection of data collections and computer hardware and software for data analysis, and training in quantitative methods of social science research to facilitate secondary analysis of criminal justice data",
     "doi": "10.17616/R3TC7P",
-    "homepage": "https://www.icpsr.umich.edu/web/pages/NACJD/index.html",
+    "homepage": "https://www.icpsr.umich.edu/sites/nacjd/home",
     "name": "National Archive of Criminal Justice Data",
     "prefix": "r3d100010260",
     "synonyms": [
@@ -4621,7 +4621,7 @@
     ]
   },
   "r3d100010483": {
-    "description": "AUSSDA - The Austrian Social Science Data Archive is a certified, national research infrastructure for the social science community. We offer sustainable and easy-to-use services in the field of digital archiving and preservation. The main beneficiaries are researchers, students, educational institutions and media professionals.\nWe implement international standards to make research data findable, accessible, interoperable and reusable according to the FAIR principles. AUSSDA supports the open science movement to maximize the potential for data reuse. We stand for integrity in archiving and advocate for compliance with data protection and ethical principles in research data management.\nAUSSDA represents Austria as a national service provider in CESSDA ERIC, has locations at the University of Vienna and the WU Wien and at the universities of Graz, Linz, Innsbruck, Krems and Salzburg as well as at the OeAW (Austrian Academy of Sciences) and works within a network of national and international partners.",
+    "description": "AUSSDA - The Austrian Social Science Data Archive is a certified, national research infrastructure for the social science community. We offer sustainable and easy-to-use services in the field of digital archiving and preservation. The main beneficiaries are researchers, students, educational institutions and media professionals.\nWe implement international standards to make research data findable, accessible, interoperable and reusable according to the FAIR principles. AUSSDA supports the open science movement to maximize the potential for data reuse. We stand for integrity in archiving and advocate for compliance with data protection and ethical principles in research data management.\nAUSSDA represents Austria as a national service provider in CESSDA ERIC, has locations at the University of Vienna and the WU Wien and at the universities of Graz, Linz, Innsbruck, Krems, Klagenfurt and Salzburg as well as at the OeAW (Austrian Academy of Sciences) and works within a network of national and international partners.",
     "doi": "10.17616/R39G72",
     "homepage": "https://data.aussda.at/",
     "license": "Copyrights",
@@ -14221,7 +14221,7 @@
     ]
   },
   "r3d100011597": {
-    "description": "The Leicester Database and Archive Service (LEDAS) is an easy to use on-line astronomical database and archive access service, dealing mainly with data from high energy astrophysics missions, but also providing full database functionality for over 200 astronomical catalogues from ground-based observations and space missions. The LEDAS also allows access to images, spectra and light curves in graphics, HDS and FITS formats, as well as access to raw and processed event data. LEDAS provides the primary means of access for the UK astronomical community to the ROSAT Public Data Archive, the ASCA Public Data Archive and the Ginga Products Archive by its Archive Network Interface ARNIE.",
+    "description": "<<<!!!<<< This repository is no longer available.>>>!!!>>>",
     "doi": "10.17616/R3S34G",
     "homepage": "https://www.ledas.ac.uk/",
     "name": "LEDAS",
@@ -14478,7 +14478,7 @@
     }
   },
   "r3d100011647": {
-    "description": "The IPK stores a large volume of research results and information in various databases.\nThe Institute of Plant Genetics and Crop Plant Research IPK Gatersleben, is a nonprofit research institution for crop genetics and molecular biology, and is part of the Leibniz Association. The mission of the IPK Gatersleben is to conduct basic and applied research in the area of plant genetics and crop plant research. The results of this work are not only of significant benefit to plant breeders and the agricultural industry, but also to the food, feed, and chemical industry. An additional research area, the use of renewable raw materials, is increasingly gaining in importance.",
+    "description": "<<<!!!<<< This record is orphaned and is replaced by record https://www.re3data.org/repository/r3d100011876. >>>!!!>>>",
     "doi": "10.17616/R3CP9H",
     "homepage": "https://www.ipk-gatersleben.de/en/services",
     "name": "IPK Gatersleben",
@@ -15240,7 +15240,7 @@
     "prefix": "r3d100011733"
   },
   "r3d100011734": {
-    "description": "The GEOSS Portal provides an entry point to access Earth Observation information and services. It will connect to a system of existing portals, addressing the GEO Societal Benefit Areas globally and provide national to regional perspective to achieve synergy and leverage.",
+    "description": "<<<!!!>>>This repository is offline<<<!!!>>>",
     "doi": "10.17616/R34938",
     "homepage": "https://www.geoportal.org/?f:dataSource=dab",
     "name": "GEOSS Portal",
@@ -17517,7 +17517,10 @@
     "prefix": "r3d100012025",
     "synonyms": [
       "Vienna Mapping Functions Open Access Data"
-    ]
+    ],
+    "xrefs": {
+      "fairsharing.legacy": "7080"
+    }
   },
   "r3d100012029": {
     "description": "EMS is the BC Ministry of Environment's primary monitoring data repository. The system was designed to capture data covering physical/chemical and biological analyses performed on water, air, solid waste discharges and ambient monitoring sites throughout the province. \nIt also contains related quality assurance data. Samples are collected by either ministry staff or permittees under the Environmental Management Act and then analyzed in public or private sector laboratories. The majority of such monitoring data is entered into EMS electronically via Electronic Data Transfer (EDT). \nEMS data is typically available in formatted hard copy reports or electronically in comma delimited (e.g., .csv) files as: \nMonitoring location-related data, \nSample and results-related data.\nDirect access to EMS is restricted to ministry staff, however public access is available upon request through EMS Web Reporting.",
@@ -27777,7 +27780,7 @@
   "r3d100013470": {
     "description": "The BonaRes Repository stores, manage and publishes soil and agricultural research data from research projects, agricultural long-term field experiments and soil profiles which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data (INSPIRE Directive) and research data (DataCite 4.0). Metadata includes AGROVOC keywords. Within the BonaRes Repository research data is provided for free reuse under the CC License and can be discovered by advanced text and map search via a number of criteria.",
     "doi": "10.17616/R31NJMVY",
-    "homepage": "https://www.bonares.de/research-data",
+    "homepage": "https://www.bonares.de/service-portal/data-repository",
     "license": "CC0",
     "name": "BonaRes Repository",
     "prefix": "r3d100013470",
@@ -29184,7 +29187,7 @@
     ]
   },
   "r3d100013693": {
-    "description": "Luleå University of Technology offers the opportunity to publish research data in the university's publication database DiVA. Choose the publication type \"Dataset\"",
+    "description": "Publications only! Luleå University of Technology offers the opportunity to publish publications, dissertations, theses, etc. from students, graduate students and researchers at Luleå University of Technology.",
     "doi": "10.17616/R31NJN25",
     "homepage": "http://urn.kb.se/resolve?urn=urn:nbn:se:ltu:diva-70730",
     "name": "Luleå University of Technology research data in the university's publication database DiVA",
@@ -29465,7 +29468,7 @@
     ]
   },
   "r3d100013746": {
-    "description": "SWISSUbase is a national cross-disciplinary solution for Swiss universities and other research organisations in need of local institutional data repositories for their researchers.  SWISSUbase offers to the Swiss research institutions a platform for the curation, preservation, and dissemination of scientific research data and for the storage of information on ongoing and completed research projects in the country. The platform relies on international archiving standards and processes to ensure that data are preserved and accessible in the long-term. Datasets are curated by Data Service Units (DSU) consisting of: FORS for social sciences across Swiss institutions; LaRS for linguistics across Swiss institutions; the University of Lausanne for all faculties at UniLausanne; and the University of Neuchâtel for all faculties of UniNeuchâtel.",
+    "description": "SWISSUbase is a national cross-disciplinary solution for Swiss universities and other research organisations in need of local institutional data repositories for their researchers.  SWISSUbase offers to the Swiss research institutions a platform for the curation, preservation, and dissemination of scientific research data and for the storage of information on ongoing and completed research projects in the country. The platform relies on international archiving standards and processes to ensure that data are preserved and accessible in the long-term. Datasets are curated by Data Service Units (DSU) consisting of: FORS for social sciences across Swiss institutions; LaRS for linguistics across Swiss institutions; and the University of Neuchâtel for all faculties of UniNeuchâtel.",
     "doi": "10.17616/R31NJN3M",
     "homepage": "https://www.swissubase.ch/en/",
     "name": "SWISSUbase",
@@ -35496,6 +35499,15 @@
       "Micelio"
     ]
   },
+  "r3d100014712": {
+    "description": "Research Data Management System for CRC/TRR 247 \"Heterogeneous Oxidation Catalysis in the Liquid Phase\"",
+    "homepage": "https://crc247.mdi.ruhr-uni-bochum.de",
+    "name": "CRC/TRR 247",
+    "prefix": "r3d100014712",
+    "synonyms": [
+      "Heterogeneous Oxidation Catalysis in the Liquid Phase"
+    ]
+  },
   "r3d100014717": {
     "description": "The WegenerNet Data Portal provides a multi-decadal data source for Austrian and international weather, climate, and ecosystems research.\n\nThe WegenerNet Open-Air Laboratory Feldbach Region comprises over 150 meteorological stations. These stations measure weather and climate in a tightly spaced grid with an unprecedented level of accuracy and detail. The measurements of several parameters are taken in 5-min intervals within the entire grid since Jan 1, 2007. Additionally, the WegenerNet 3D Observing System observes the troposphere and precipitation with very high spatial and temporal resolution.\n\nAs a smaller \"sister network\", the WegenerNet Gesäuse Region, consists of seventeen meteorological and two hydrographic stations in an alpine setting at altitudes ranging from about 600 m to 2200 m. Data are available generally since 2007 and have a temporal resolution of 10 minutes.",
     "doi": "10.17616/R31NJNUL",
@@ -35696,6 +35708,16 @@
     "name": "RAKIP-Web Model Repository",
     "prefix": "r3d100014752"
   },
+  "r3d100014753": {
+    "description": "The Deutscher Wetterdienst (DWD) Open Data Server is the official open data portal of Germany's national meteorological service. Established under a legal mandate from the German Weather Service Act, its primary purpose is to provide free public access to a vast and diverse collection of weather, climate, and environmental spatial data. The repository serves a wide range of users, from researchers and developers to businesses and the general public, by offering data essential for applications in science, technology, and public information.\n\nThe scope of data is comprehensive and includes:\n\n    Weather Data: Numerical model forecasts, radar data, and current measurements/observations.\n\n    Climate Data: A large archive of historical and processed climate data, accessible via the integrated Climate Data Center (CDC) subtree.\n\n    Specialized Formats: Many datasets are also available through OGC-compatible web services (WMS, WFS) for integration into Geographic Information Systems (GIS).\n\nThe platform operates on the principle of free provision, though it notes that service and availability levels for the open server are not guaranteed. For critical business or operational processes requiring higher data integrity, dedicated service agreements are available. The repository is actively maintained, with news feeds and change logs to inform users of updates and extensions to the data offerings.",
+    "doi": "10.17616/R31NJNVL",
+    "homepage": "https://opendata.dwd.de/",
+    "name": "Deutscher Wetterdienst Open Data Server",
+    "prefix": "r3d100014753",
+    "synonyms": [
+      "DWD Open Data Server"
+    ]
+  },
   "r3d100014754": {
     "description": "The Hidrográfico+ is a marine geospatial data infrastructure created to facilitate access to data produced by the Instituto Hidrográfico, promoting the blue economy and contributing to ocean science and sustainability. The Hydrographic+ is maintained by the Instituto Hidrográfico, the Portuguese Hydrographic Office, which undertakes research, analysis, and knowledge dissemination in the fields of marine sciences and technologies, alongside its responsibilities as the national hydrographic authority. In this way, the infrastructure supports a broad spectrum of scientific research with diverse technical applications.\nHydrographic+ provides organized and interoperable access to marine datasets, including hydrography, oceanography, marine chemistry, marine geology, and navigation. All data and services are accompanied by metadata records describing data access links and conditions of use.",
     "doi": "10.17616/R31NJNVM",
@@ -35733,13 +35755,64 @@
       "Digital Preservation at ZB MED"
     ]
   },
+  "r3d100014764": {
+    "description": "Nefeli is the institutional data repository where researchers from Helmholtz Munich can store software and data obtained from their research projects for long-term reuse. Research data from any stage of the research data lifecycle can be uploaded to Nefeli. Uploads receive a Digital Object Identifier (DOI).",
+    "doi": "10.17616/R31NJNVW",
+    "homepage": "https://nefeli.helmholtz-munich.de",
+    "name": "Nefeli",
+    "prefix": "r3d100014764"
+  },
   "r3d100014765": {
     "description": "MyRiceBase is a curated biological database, which aims to centralise genomics and transcriptomics information for rice quality traits, particularly amylose and antioxidants. To date, MyRiceBase consists of single nucleotide polymorphisms (SNP), genes and biological networks that are available for the user to search, browse or download this information. Putative panel SNPs from the genome and expressed genes, panel SNPs of pigmented rice varieties, annotated SNPs, and co-expressed genes can be retrieved using search and filter functions. A search query can be done based on SNP ID, gene ID and variety name. MyRiceBase also provides Tableau and Neo4j for visualisation. This repository serves to aid basic, translational and applied research, towards the improvement of quality traits in rice varieties.",
+    "doi": "10.17616/R31NJNVX",
     "homepage": "http://myricebase.mardi.gov.my/",
     "name": "MyRiceBase",
     "prefix": "r3d100014765",
     "synonyms": [
       "Malaysian Rice Database"
     ]
+  },
+  "r3d100014766": {
+    "description": "PapayaNetBase is a repository of genomics and genetics information for Carica papaya cultivar Eksotika. PapayaNetBase integrates the Eksotika, Sekaki and other papaya genome information (i.e. genes, proteins, metabolites, pathways, SNPs and SSRs) that were generated and annotated using next generation sequencing technology and bioinformatics approaches. PapayaNetBase aims to provide a valuable resource the papaya research community by enabling molecular biologist, geneticist and breeder to mine and export the genomics and genetics information of Carica papaya for the application in the papaya breeding programme, towards the improvement of agronomically traits in papaya varieties.",
+    "doi": "10.17616/R31NJNVY",
+    "homepage": "http://cpedb.mardi.gov.my/",
+    "name": "PapayaNetBase",
+    "prefix": "r3d100014766",
+    "synonyms": [
+      "A Papaya Genomics Database"
+    ]
+  },
+  "r3d100014770": {
+    "description": "ReSeeD is the central platform of the Ruhr University Bochum (Germany) that supports sustainable management of the research data in the interest of good scientific practice and the FAIR principles. The aim of ReSeeD is to offer a technical platform for the permanent storage, structuring and - if desired - publication of research data.",
+    "doi": "10.17616/R31NJNW2",
+    "homepage": "https://rdms.rd.ruhr-uni-bochum.de/",
+    "name": "ReSeeD",
+    "prefix": "r3d100014770",
+    "synonyms": [
+      "Research Data Management System"
+    ]
+  },
+  "r3d100014774": {
+    "description": "The dataverse repository was set up to manage data products of the collaborative research of the Ministerio de las Culturas, las Artes y los saberes (https://www.mincultura.gov.co/). The first research project in the repository is about strengthening artistic and cultural education by supporting teachers through classroom observation, collaborative reflection, and targeted professional development, aiming to expand their pedagogical tools, improve instructional quality, and foster innovations that respond to the real needs of their educational communities.",
+    "doi": "10.17616/R31NJNW6",
+    "homepage": "https://investigacionartes.mincultura.gov.co/",
+    "name": "Repositorio de Datos del Ministerio de las Culturas, las Artes y los Saberes",
+    "prefix": "r3d100014774",
+    "synonyms": [
+      "Ministry of Culture, Arts, and Knowledge Dataverse"
+    ]
+  },
+  "r3d100014776": {
+    "description": "DATAPB is a data repository adhering to the CARE and FAIR principles of Open Science. Our repository is integrated into the National Open Science Consortium - CoNCiênciA/CNPq. DATAPB is co-funded by the Paraíba Research Support Foundation (FAPESQ-PB), the French Research Institute for Sustainable Development (IRD), and the Rectorate of the Federal University of Paraíba. The repository is managed by the Postgraduate Program in Ecology and Environmental Monitoring (PPGEMA, UFPB Campus IV) and maintained by a network of volunteer collaborators. Data of any format, area of ​​knowledge, and with any geographic or temporal scope can be deposited.",
+    "doi": "10.17616/R31NJNW8",
+    "homepage": "https://dataverse.ideal.ufpb.br/",
+    "name": "DataPB",
+    "prefix": "r3d100014776"
+  },
+  "r3d100014777": {
+    "description": "The ELIXIR Luxembourg Data Catalogue is a unique collection of project-level metadata from large research initiatives in a diverse range of fields, including clinical, molecular and observational studies. Its aim is to improve the findability of these projects following FAIR data principles. \nThe ELIXIR Luxembourg Data Sustainability Service, hosted by the Luxembourg Centre for Systems Biomedicine (LCSB) at the University of Luxembourg, offers a unique model for research data management. This service provides support for data hosting, access provision and findability, actively supporting the long-term availability, documentation, and regulatory compliance of datasets, platforms, and projects. Sustainability governance is integrated in the process by assisting data providers in defining access models, setting up Data Access Committees (DACs), and ensuring adherence to GDPR and relevant national legal frameworks. ELIXIR Luxembourg's role is operational and administrative: it stores and redistributes data under instruction of data providers, manages Data Use Agreements (DUAs), and coordinates user access requests and reporting. Access to data can be either open access (i.e., data can be accessed without restrictions) or controlled access, for which review by the provider-led DAC and signing of Data Use Agreement are required.",
+    "homepage": "https://elixir-luxembourg.org/services/",
+    "name": "ELIXIR Luxembourg Data Sustainability Service",
+    "prefix": "r3d100014777"
   }
 }

bioregistry/external/uniprot/processed.json

@@ -49,7 +49,7 @@
         "pubmed": "36420889"
       }
     ],
-    "uri_format": "http://getentry.ddbj.nig.ac.jp/search/get_entry?accnumber=$1"
+    "uri_format": "https://getentry.ddbj.nig.ac.jp/getentry/na/$1?filetype=html"
   },
   "DB-0015": {
     "abbreviation": "dictyBase",
@@ -409,8 +409,8 @@
     "name": "Legionella pneumophila genome database",
     "publications": [
       {
-        "doi": "10.1186/1471-2164-6-14",
-        "pubmed": "15698474"
+        "doi": "10.1093/nar/gkm1042",
+        "pubmed": "18032431"
       }
     ],
     "uri_format": "http://genolist.pasteur.fr/LegioList/genome.cgi?external_query+$1"
@@ -566,19 +566,6 @@
     ],
     "uri_format": "https://www.ebi.ac.uk/interpro/entry/pfam/$1"
   },
-  "DB-0074": {
-    "abbreviation": "PharmGKB",
-    "category": "Organism-specific databases",
-    "homepage": "https://www.pharmgkb.org/",
-    "name": "The Pharmacogenetics and Pharmacogenomics Knowledge Base",
-    "publications": [
-      {
-        "doi": "10.1385/1-59259-957-5:179",
-        "pubmed": "16100408"
-      }
-    ],
-    "uri_format": "https://www.pharmgkb.org/gene/$1"
-  },
   "DB-0078": {
     "abbreviation": "PIR",
     "category": "Sequence databases",
@@ -704,8 +691,8 @@
     "name": "Simple Modular Architecture Research Tool; a protein domain database",
     "publications": [
       {
-        "doi": "10.1093/nar/gkx922",
-        "pubmed": "29040681"
+        "doi": "10.1093/nar/gkaf1023",
+        "pubmed": "41062452"
       }
     ],
     "uri_format": "https://smart.embl.de/smart/do_annotation.pl?DOMAIN=$1"
@@ -1175,19 +1162,6 @@
     ],
     "uri_format": "https://www.allergome.org/script/dettaglio.php?id_molecule=$1"
   },
-  "DB-0161": {
-    "abbreviation": "neXtProt",
-    "category": "Organism-specific databases",
-    "homepage": "https://www.nextprot.org/",
-    "name": "neXtProt; the human protein knowledge platform",
-    "publications": [
-      {
-        "doi": "10.1093/nar/gkz995",
-        "pubmed": "31724716"
-      }
-    ],
-    "uri_format": "https://www.nextprot.org/entry/$1"
-  },
   "DB-0162": {
     "abbreviation": "GeneTree",
     "category": "Phylogenomic databases",
@@ -1243,7 +1217,7 @@
   "DB-0168": {
     "abbreviation": "EvolutionaryTrace",
     "category": "Miscellaneous databases",
-    "homepage": "http://lichtargelab.org/software/ETserver",
+    "homepage": "https://evolution.lichtargelab.org/ETviewer/",
     "name": "Relative evolutionary importance of amino acids within a protein sequence",
     "publications": [
       {
@@ -1251,7 +1225,7 @@
         "pubmed": "22183528"
       }
     ],
-    "uri_format": "http://mammoth.bcm.tmc.edu/cgi-bin/report_maker_ls/uniprotTraceServerResults.pl?identifier=$1"
+    "uri_format": "https://evolution.lichtargelab.org/cgi-bin/report_maker_ls/uniprotTraceServerResults.pl?identifier=$1"
   },
   "DB-0169": {
     "abbreviation": "GenomeRNAi",
@@ -1325,8 +1299,8 @@
     "name": "ChiTaRS",
     "publications": [
       {
-        "doi": "10.1093/nar/gkz1025",
-        "pubmed": "31747015"
+        "doi": "10.1093/nar/gkae1126",
+        "pubmed": "39676654"
       }
     ],
     "uri_format": "http://biosrv.org/chmb/search?GEN=$1"
@@ -1409,19 +1383,6 @@
     ],
     "uri_format": "https://thebiogrid.org/$1"
   },
-  "DB-0185": {
-    "abbreviation": "TreeFam",
-    "category": "Phylogenomic databases",
-    "homepage": "http://www.treefam.org",
-    "name": "TreeFam database of animal gene trees",
-    "publications": [
-      {
-        "doi": "10.1093/nar/gkt1055",
-        "pubmed": "24194607"
-      }
-    ],
-    "uri_format": "http://www.treefam.org/family/$1"
-  },
   "DB-0187": {
     "abbreviation": "CCDS",
     "category": "Sequence databases",
@@ -1830,6 +1791,12 @@
     "category": "Organism-specific databases",
     "homepage": "https://www.niagads.org/genomics/",
     "name": "NIAGADS Genomics Database",
+    "publications": [
+      {
+        "doi": "10.1002/alz.70255",
+        "pubmed": "40545618"
+      }
+    ],
     "uri_format": "https://www.niagads.org/genomics/app/record/gene/$1"
   },
   "DB-0238": {
@@ -2008,8 +1975,8 @@
     "name": "Biological Magnetic Resonance Data Bank",
     "publications": [
       {
-        "doi": "10.1093/nar/gkm957",
-        "pubmed": "17984079"
+        "doi": "10.1093/nar/gkac1050",
+        "pubmed": "36478084"
       }
     ],
     "uri_format": "https://bmrb.io/data_library/summary/protein.php?uniprot=$1"
@@ -2067,11 +2034,11 @@
     "name": "AlphaFold Protein Structure Database",
     "publications": [
       {
-        "doi": "10.1093/nar/gkab1061",
-        "pubmed": "34791371"
+        "doi": "10.1093/nar/gkad1011",
+        "pubmed": "37933859"
       }
     ],
-    "uri_format": "https://alphafold.ebi.ac.uk/entry/$1"
+    "uri_format": "https://alphafold.ebi.ac.uk/search/text/$1"
   },
   "DB-0263": {
     "abbreviation": "ClinGen",
@@ -2279,6 +2246,39 @@
         "pubmed": "36263822"
       }
     ],
-    "uri_format": "https://card.mcmaster.ca/aro/$1"
+    "uri_format": "https://card.mcmaster.ca/$1"
+  },
+  "DB-0283": {
+    "abbreviation": "Agora",
+    "category": "Miscellaneous databases",
+    "homepage": "https://agora.adknowledgeportal.org",
+    "name": "Agora",
+    "uri_format": "https://agora.adknowledgeportal.org/genes/$1/"
+  },
+  "DB-0284": {
+    "abbreviation": "CIViC",
+    "category": "Organism-specific databases",
+    "homepage": "https://civicdb.org",
+    "name": "CIViC Clinical Interpretation of Variants in Cancer",
+    "publications": [
+      {
+        "doi": "110.1038/ng.3774",
+        "pubmed": "28138153"
+      }
+    ],
+    "uri_format": "https://civicdb.org/links/entrez_id/$1"
+  },
+  "DB-0285": {
+    "abbreviation": "ClinPGx",
+    "category": "Organism-specific databases",
+    "homepage": "https://www.clinpgx.org",
+    "name": "The Clinical Pharmacogenomics Resource",
+    "publications": [
+      {
+        "doi": "10.1002/cpt.2350",
+        "pubmed": "34216021"
+      }
+    ],
+    "uri_format": "https://www.clinpgx.org/gene/$1"
   }
 }

bioregistry/version.py

@@ -11,7 +11,7 @@ __all__ = [
     "get_version",
 ]
 
-VERSION = "0.13.18"
+VERSION = "0.13.19"
 
 
 def get_git_hash() -> str | None: