bioregistry 0.13.18__py3-none-any.whl → 0.13.19__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -111,8 +111,8 @@
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  },
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  "ADCAD": {
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  "contact": {
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- "email": "mecum@nceas.ucsb.edu",
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- "name": "Bryce Mecum"
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+ "email": "jones@nceas.ucsb.edu",
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+ "name": "Matt Jones"
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  },
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  "description": "Ontology to support disciplinary annotation of datasets housed at the Arctic Data Center (https://arcticdata.io)",
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  "homepage": "https://github.com/NCEAS/adc-disciplines",
@@ -339,7 +339,7 @@
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  "license": "CC-BY-4.0",
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  "name": "AIdentifyAGE",
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  "prefix": "AIDENTIFYAGE",
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- "version": "v1.0.2-beta"
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+ "version": "v1.0.8-beta"
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  },
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  "AIO": {
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  "contact": {
@@ -422,6 +422,17 @@
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  "name": "The Amphioxus Development and Anatomy Ontology",
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  "prefix": "AMPHX"
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  },
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+ "ANCO": {
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+ "contact": {
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+ "email": "samsonya@gmail.com",
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+ "name": "Samson Yohannes Amare"
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+ },
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+ "description": "Ontology for Antenatal Care data capture, visits, services, risks, and outcomes.",
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+ "license": "http://www.gnu.org/licenses/gpl-3.0",
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+ "name": "ANC Ontology",
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+ "prefix": "ANCO",
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+ "version": "1.0.0"
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+ },
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  "AO": {
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  "contact": {
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  "email": "s.shinneman@surrey.ac.uk",
@@ -515,7 +526,7 @@
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  "license": "CC-BY-4.0",
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  "name": "Ascomycete Phenotype Ontology",
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  "prefix": "APO",
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- "version": "2025-12-19"
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+ "version": "2026-01-12"
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  },
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  "APOLLO-SV": {
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  "contact": {
@@ -1043,6 +1054,28 @@
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  ],
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  "version": "21"
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  },
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+ "BIOPAX": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "The goal of the BioPAX group is to develop a common exchange format for biological pathway data. More information is available at http://www.biopax.org. This ontology is freely available under the LGPL license",
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+ "name": "BioPAX Level 3 ontology",
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+ "prefix": "BIOPAX",
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+ "version": "v1.0"
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+ },
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+ "BIOTOP": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "Upper-Level ontology for Biology and Medicine. Compatible with BFO, DOLCE, and the UMLS Semantic Network, and the UMLS Semantic Network (mapping files available), BioTop Website:\nhttp://purl.org/biotop\n\n\nSee related articles at:\n\nhttp://www.google.com/search?q=Schulz+BioTop+site:www.ncbi.nlm.nih.gov/pmc/articles+ontology+OR+ontologies",
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+ "homepage": "http://purl.org/biotop",
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+ "license": "CC-BY-3.0",
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+ "name": "BioTop",
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+ "prefix": "BIOTOP",
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+ "version": "v2012-04-24"
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+ },
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  "BIPOM": {
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  "contact": {
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  "email": "anne.goelzer@inrae.fr",
@@ -1448,6 +1481,17 @@
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  ],
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  "version": "1.02"
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  },
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+ "CARESSES": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "The CARESSES Ontology encodes guidelines defined by experts in Transcultural Nursing, with the aim of offering a specific tool for endowing social assistive robots (assisting older adults) with cultural competence.",
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+ "license": "CC-BY-4.0",
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+ "name": "CARESSES Ontology",
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+ "prefix": "CARESSES",
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+ "version": "1.0"
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+ },
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  "CARO": {
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  "contact": {
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  "email": "haendel@ohsu.edu",
@@ -2018,6 +2062,17 @@
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  "prefix": "COB",
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  "version": "2025-12-12"
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  },
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+ "COCHRANE": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "The Cochrane Core ontology describes the entities and concepts that exist in the domain of evidence based healthcare. It is used for the construction of the Cochrane Linked Data Vocabulary containing some 400k terms including Interventions (Drugs, Procedures etc), Populations (Age, Sex, Condition), and clinical Outcomes., The Cochrane Core ontology describes the entities and concepts that exist in the domain of evidence based healthcare.",
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+ "homepage": "https://data.cochrane.org/ontologies/core/index-en.html",
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+ "name": "Cochrane Core Vocabulary Ontology",
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+ "prefix": "COCHRANE",
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+ "version": "2.0.1"
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+ },
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  "CODO": {
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  "description": "The initial version, CODO ontology v1.0 to v1.3, encompasses pivotal features such as classes like patients, clinical findings, symptoms, and properties like relationships between patients, travel history, and test results. It facilitates tracking specific pandemic cases, detailing how patients may have been infected, and identifying potential contacts at risk due to their connection with the infected individual. CODO also enables monitoring of clinical tests, travel history, available resources, and actual needs like ICU beds and invasive ventilators. With capabilities for advanced analytics, contact tracing, trend studies, and growth projections based on daily COVID-19 data, CODO supports the organization and representation of COVID-19 data on a daily basis. It allows semantic querying and data retrieval and aids in behavior analysis of the disease and transmission routes. In contrast, Version 1.4, also known as CODO_COVIDRO 1.4 or COVID-19 Drug and Risk Ontology (COViDRO), presents a formal model specifically designed to tackle the multifaceted challenges associated with COVID-19 treatment, risk factors, and drug interactions. The knowledge embedded in the COViDRO model is extracted from diverse medical literature and treatment guidelines provided by reputable organizations such as the World Health Organization (WHO), the National Institutes of Health (NIH), the Food and Drug Administration (FDA), and the Centers for Disease Control and Prevention (CDC). The model incorporates information on therapeutics, adverse effects, and drug interactions from authoritative medical literature, making a significant contribution to patient care, research, and public health strategies. COViDRO, or COVID-19 Drug and Risk Ontology 1.4, seamlessly integrates into knowledge graph information systems or recommender systems. It assists healthcare professionals in suggesting appropriate treatments by considering a comprehensive set of factors, abbreviated as \"PRADiCT\" (Patient Risk factors, Adverse effects, Drug interaction, Clinical findings, and Treatment procedure). These factors encompass patient risk level, risk factors (such as underlying health conditions, age, immunocompromised state, and occupation), drug interactions, drug adverse effects, clinical findings (including diagnosis, signs, symptoms, and status), and treatment procedures. By offering a standardized framework for organizing and integrating data from diverse sources like clinical trials, medical literature, and real-world patient data, COViDRO enhances informed decision-making, thereby elevating the quality of patient care. It stands as a patient-centric solution, facilitating COVID-19 treatment options and personalized care based on individual patient characteristics. CODO V1.5 extends the previous CODO V1.4 with the focus on COVID-19 Virus Genomics for representation of genomic sequence data. VGO model comprises 261 classes, 55 object properties, and 14 data properties. Designed to streamline the use and dissemination of COVID-19 genomic sequence data, VGO serves as a robust resource for researchers and healthcare professionals. It incorporates data from the Global Initiative on Sharing All Influenza Data (GISAID), which facilitates efficient querying and visualization of genomic data, thereby improving both accessibility and usability. VGO includes a variety of classes that represent COVID-19-related data such as variants, mutations, amino acids, genes, proteins, genome sequencing, samples, hosts, sampling strategies, and assembly methods. Furthermore, VGO supports automated reasoning, enhancing its functionality for in-depth analysis and interpretation. By integrating GISAID data into the VGO knowledge graph, the model not only enriches its conceptual representation but also optimizes the querying and visualization processes, making genomic data more accessible and usable for the scientific and medical communities.",
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  "homepage": "https://github.com/biswanathdutta/CODO",
@@ -2610,6 +2665,17 @@
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  "prefix": "DATAHUB",
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  "version": "0.9.3"
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  },
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+ "DBM": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "An ontology for the Drug Bureau of Macedonia (DBM)., An ontology for describing brand-name drugs.",
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+ "license": "CC-BY-3.0",
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+ "name": "DBM Ontology",
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+ "prefix": "DBM",
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+ "version": "1.1"
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+ },
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  "DC": {
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  "contact": {
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  "email": "kdurante@stanford.edu",
@@ -2666,10 +2732,10 @@
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  "email": "dclunie@dclunie.com",
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  "name": "David Clunie"
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  },
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- "description": "DICOM Controlled Terminology (PS3.16 2025e Annex D)",
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+ "description": "DICOM Controlled Terminology (PS3.16 2026a Annex D)",
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  "name": "DICOM Controlled Terminology",
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  "prefix": "DCM",
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- "version": "2025e_20251115"
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+ "version": "2026a_20260202"
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  },
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  "DCMITYPE": {
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  "contact": {
@@ -2791,6 +2857,18 @@
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  "prefix": "DECIDE",
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  "version": "Version 1.2"
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  },
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+ "DEMLAB": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "The ontology has been developed in the framework of the Dem@Care project for representing the experimentation protocol towards diagnostic support and assessment of Dementia in a controlled environment. The aim of the protocol is to provide a brief overview of their health status of the participants during consultation (cognition, behaviours and function), and to correlate the system (sensor) data with the data collected using typical dementia care assessment tools., and to correlate the system (sensor) data with the data collected using typical dementia care assessment tools.\n\nThe ontology describes the basic Steps of the experimentation protocol (Directed Activities, Semi-directed Activities and Free Discussion with the Clinician), the Tasks that are involved, as well as the measurement types relevant to each Task. The defined protocol can be reused and further extended, adding new steps, tasks and measured data.\n\nDocumentation regarding the ontology vocabulary can be found at http://www.demcare.eu/ontologies/demlab.html",
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+ "homepage": "http://www.demcare.eu/ontologies/demlab.html",
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+ "license": "CC-BY-3.0",
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+ "name": "Dem@Care Lab Ontology for Dementia Assessment",
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+ "prefix": "DEMLAB",
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+ "version": "1.0"
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+ },
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  "DERMLEX": {
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  "contact": {
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  "email": "nlevinthal@aad.org",
@@ -2856,6 +2934,16 @@
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  "prefix": "DIAGONT",
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  "version": "2.0"
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  },
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+ "DICOM": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "Ontology for healthcare metadata - especially metadata found in DICOM files (Digital Imaging and Communications in Medicine, see http://dicom.nema.org/). Author: Michael Brunnbauer, Bonubase GmbH (www.bonubase.com). The author's email address is brunni@netestate.de. See http://purl.org/healthcarevocab/v1help for explanations.",
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+ "name": "Healthcare metadata - DICOM ontology",
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+ "prefix": "DICOM",
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+ "version": "v2015-01-11"
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+ },
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  "DIDEO": {
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  "contact": {
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  "email": "mbrochhausen@gmail.com",
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  "license": "CC-BY-4.0",
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  "name": "Drosophila Phenotype Ontology",
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  "prefix": "DPO",
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- "version": "2025-10-17"
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+ "version": "2026-01-13"
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  },
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  "DRANPTO": {
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  "contact": {
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  "email": "mgiglio@som.umaryland.edu",
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  "name": "Michelle Giglio"
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  },
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- "description": "An ontology of evidence types for supporting conclusions in scientific research",
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+ "description": "An ontology of evidence types for supporting conclusions in scientific research, The Evidence & Conclusion Ontology (ECO) describes types of scientific evidence within the biological research domain that arise from laboratory experiments, computational methods, literature curation, or other means.",
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  "homepage": "https://github.com/evidenceontology/evidenceontology",
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+ "license": "CC0-1.0",
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  "name": "Evidence and Conclusion Ontology",
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  "prefix": "ECO",
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  "publications": [
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  },
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  "ECSO": {
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  "contact": {
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- "email": "mecum@nceas.ucsb.edu",
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- "name": "Bryce Mecum"
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+ "email": "jones@nceas.ucsb.edu",
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+ "name": "Matt Jones"
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  },
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  "description": "DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases",
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  "homepage": "https://github.com/DataONEorg/sem-prov-ontologies",
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  "homepage": "http://www.ebi.ac.uk/efo",
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  "name": "Experimental Factor Ontology",
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  "prefix": "EFO",
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- "version": "3.85.0"
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+ "version": "3.86.0"
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  },
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  "EGO": {
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  "contact": {
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  "license": "CC0-1.0",
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  "name": "European Viral Outbreak Response Alliance Ontology",
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  "prefix": "EVORAO",
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- "version": "1.0.10806"
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+ "version": "1.1.29"
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  },
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  "EVS": {
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  "contact": {
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  "homepage": "http://purl.obolibrary.org/obo/fbbt",
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  "name": "Drosophila Gross Anatomy Ontology",
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  "prefix": "FB-BT",
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- "version": "2025-10-16"
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+ "version": "2026-01-13"
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  },
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  "FB-CV": {
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  "contact": {
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  "license": "CC-BY-4.0",
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  "name": "FlyBase Controlled Vocabulary",
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  "prefix": "FB-CV",
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- "version": "2025-10-17"
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+ "version": "2026-01-13"
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  },
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  "FB-DV": {
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  "contact": {
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  "homepage": "http://sourceforge.net/p/fbbtdv/wiki/Home/",
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  "name": "Drosophila Development Ontology",
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  "prefix": "FB-DV",
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- "version": "2025-10-16"
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+ "version": "2026-01-13"
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  },
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  "FB-SP": {
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  "contact": {
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  "email": "chris@bio.umass.edu",
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  "name": "Chris Woodcock"
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  },
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- "description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.",
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+ "description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research., This CV covers sample preparation, visualization and imaging methods.",
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  "homepage": "http://cellimagelibrary.org/",
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+ "license": "CC-BY-4.0",
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  "name": "Biological Imaging Methods Ontology",
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- "prefix": "FBbi"
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+ "prefix": "FBbi",
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+ "version": "2026-01-23"
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  },
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  "FCC1": {
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  "contact": {
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  "license": "CC-BY-4.0",
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  "name": "Fission Yeast Phenotype Ontology",
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  "prefix": "FYPO",
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- "version": "2025-09-27"
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+ "version": "2026-01-16"
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  },
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  "G-PROV": {
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  "contact": {
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  "email": "paulo@psemantica.com",
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  "name": "Paulo Pinheiro"
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  },
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- "description": "The Human Health Exposure Analysis Resource (HHEAR) measures exposures that cover the breadth of the “exposome,” which encompasses all environmental exposures including chemical, physical, and biological stressors, as well as lifestyle and social environments, from conception through adulthood.",
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- "homepage": "https://hhearprogram.org",
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+ "description": "The Human Health Exposure Analysis Resource (HHEAR) measures exposures that cover the breadth of the “exposome,” which encompasses all environmental exposures including chemical, physical, and biological stressors, as well as lifestyle and social environments, from conception through adulthood. The HHEAR Ontology was developed as an application ontology to represent data collected within the HHEAR program and support data pooling efforts across studies.",
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+ "homepage": "https://hheardatacenter.mssm.edu",
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  "name": "Human Health Exposure Analysis Resource",
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  "prefix": "HHEAR",
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  "version": "1.13"
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  "prefix": "HHEARVS",
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  "version": "1.2"
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  },
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+ "HIFM": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "An ontology for describing brand-name drugs.",
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+ "license": "CC-BY-3.0",
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+ "name": "HIFM Ontology",
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+ "prefix": "HIFM",
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+ "version": "1.1"
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+ },
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  "HINO": {
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  "contact": {
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  "email": "yongqunh@med.umich.edu",
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  ],
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  "version": "4.0"
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  },
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+ "HOSP": {
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+ "contact": {
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+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
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+ "name": "LOV Migration"
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+ },
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+ "description": "A RDF Schema that defines concepts and relationships used for Hospital data.",
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+ "name": "Hospital Vocabulary",
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+ "prefix": "HOSP",
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+ "version": "v2015-09-30"
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+ },
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  "HP": {
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  "contact": {
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  "email": "dr.sebastian.koehler@gmail.com",
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  "publications": [
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  "http://human-phenotype-ontology.github.io/license.html"
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  ],
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- "version": "2025-11-24"
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+ "version": "2026-01-08"
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  },
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  "HPIO": {
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  "contact": {
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  },
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  "description": "A collection of curated and standardized values used by the HuBMAP (Human BioMolecular Atlas Program) and SenNet (Cellular Senescence Network) metadata records to ensure uniformity in the description of samples and single-cell data produced by the consortium.",
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  "name": "HuBMAP Research Attributes Value Set",
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- "prefix": "HRAVS"
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+ "prefix": "HRAVS",
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+ "version": "2.14.7"
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  },
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  "HRDO": {
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  "contact": {
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  "homepage": "http://www.informatics.jax.org/searches/AMA_form.shtml",
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  "name": "Mouse Adult Gross Anatomy Ontology",
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  "prefix": "MA",
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- "version": "releases/2017-02-07"
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+ "version": "2026-01-09"
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  },
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  "MACROALGAETRAITS": {
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  "contact": {
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  "email": "Leigh.Carmody@jax.org",
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  "name": "Leigh Carmody"
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  },
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- "description": "The Medical Action Ontology (MAxO) provides a structured vocabulary for medical procedures, interventions, therapies, and treatments for disease with an emphasis on rare disease (RD). It is often difficult to find relevant clinical literature about strategies to manage RD patients. Responding to this need, MAxO provides a vocabulary to annotate diseases and phenotypes with recommended treatments and interventions.",
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+ "description": "The Medical Action Ontology (MAxO) provides a structured vocabulary for medical procedures, interventions, therapies, and treatments for disease with an emphasis on rare disease (RD). It is often difficult to find relevant clinical literature about strategies to manage RD patients. Responding to this need, MAxO provides a vocabulary to annotate diseases and phenotypes with recommended treatments and interventions., An ontology to represent medically relevant actions, procedures, and recommendations.",
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  "homepage": "https://github.com/monarch-initiative/MAxO",
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+ "license": "CC-BY-4.0",
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  "name": "Medical Action Ontology",
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  "prefix": "MAXO",
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- "version": "2025-04-24"
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+ "version": "2026-01-15"
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  },
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  "MCBCC": {
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  "contact": {
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  "prefix": "MEDO",
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  "version": "1.0"
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  },
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+ "MEDRED": {
7431
+ "contact": {
7432
+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
7433
+ "name": "LOV Migration"
7434
+ },
7435
+ "description": "This ontology aims to model generic Medical Data Acquisition Instruments, which can be interoperable across different clinical data management systems. The ontology is developed in the context of the MedRed project (https://www.hevs.ch/en/rad-institutes/institute-of-information-systems/projects/medical-research-data-acquisition-platform-14092), Esta ontología has sido diseñada para representar Instrumentos de captura de datos clínicos, dentro del contexto del proyecto MedRed (https://www.hevs.ch/en/rad-institutes/institute-of-information-systems/projects/medical-research-data-acquisition-platform-14092), Cette ontologie a été conçue pour representer des Instruments pour l'aquisition de données cliniques, dans le contexte du projet MedRed project (https://www.hevs.ch/en/rad-institutes/institute-of-information-systems/projects/medical-research-data-acquisition-platform-14092)",
7436
+ "license": "http://purl.org/NET/rdflicense/cc-by4.0",
7437
+ "name": "MedRed ontology: clinical data acquisition model",
7438
+ "prefix": "MEDRED",
7439
+ "version": "0.0.1"
7440
+ },
7316
7441
  "MEGO": {
7317
7442
  "contact": {
7318
7443
  "email": "ariane.toussaint@ulb.ac.be",
@@ -7529,7 +7654,7 @@
7529
7654
  "license": "CC-BY-3.0",
7530
7655
  "name": "MHC Restriction Ontology",
7531
7656
  "prefix": "MHCRO",
7532
- "version": "2025-10-29"
7657
+ "version": "2026-01-13"
7533
7658
  },
7534
7659
  "MHMO": {
7535
7660
  "contact": {
@@ -7561,6 +7686,15 @@
7561
7686
  "name": "MIAPA Ontology",
7562
7687
  "prefix": "MIAPA"
7563
7688
  },
7689
+ "MICRONT": {
7690
+ "contact": {
7691
+ "email": "sebastian.schmidt@ucc.ie",
7692
+ "name": "Sebastian Schmidt"
7693
+ },
7694
+ "description": "microntology encompasses (in v1.0) a controlled vocabulary of 148 crosslinked terms that fall into five broad habitat categories (terrestrial, aquatic, aerial, host-associated and anthropogenic environments) and additional categories that describe broad physicochemical properties, morphology, human host properties, animal host captivity status, and miscellaneous informative features such as (chemical) contamination or ancient (paleontological) sample provenance. MICRONT is designed as a pragmatic lightweight complement to existing detailed ontologies like ENVO, UBERON or GOLD; MICRONT terms are crosslinked to these where appropriate. Its purpose is a fast, automatable annotation of (meta)genomic microbial samples with browsable informative tags.",
7695
+ "name": "microntology",
7696
+ "prefix": "MICRONT"
7697
+ },
7564
7698
  "MIDO": {
7565
7699
  "contact": {
7566
7700
  "email": "agun@rpi.edu",
@@ -7867,8 +8001,8 @@
7867
8001
  },
7868
8002
  "MOSAIC": {
7869
8003
  "contact": {
7870
- "email": "mecum@nceas.ucsb.edu",
7871
- "name": "Bryce Mecum"
8004
+ "email": "jones@nceas.ucsb.edu",
8005
+ "name": "Matt Jones"
7872
8006
  },
7873
8007
  "description": "Ontology to support Semantic Annotation of MOSAiC datasets housed in the Arctic Data Center (https://arcticdata.io).",
7874
8008
  "homepage": "https://github.com/DataONEorg/sem-prov-ontologies",
@@ -7885,7 +8019,7 @@
7885
8019
  "homepage": "http://www.informatics.jax.org/searches/MP_form.shtml",
7886
8020
  "name": "Mammalian Phenotype Ontology",
7887
8021
  "prefix": "MP",
7888
- "version": "2025-12-18"
8022
+ "version": "2026-01-27"
7889
8023
  },
7890
8024
  "MPATH": {
7891
8025
  "contact": {
@@ -8127,7 +8261,7 @@
8127
8261
  "license": "CC-BY-4.0",
8128
8262
  "name": "National Cancer Institute Thesaurus",
8129
8263
  "prefix": "NCIT",
8130
- "version": "24.01e"
8264
+ "version": "25.12e"
8131
8265
  },
8132
8266
  "NCOD": {
8133
8267
  "contact": {
@@ -8616,7 +8750,7 @@
8616
8750
  "license": "http://spdx.org/licenses/CC-BY-4.0",
8617
8751
  "name": "Neuron Phenotype Ontology",
8618
8752
  "prefix": "NPOKB",
8619
- "version": "2025-09-13"
8753
+ "version": "2026-01-21"
8620
8754
  },
8621
8755
  "NRO": {
8622
8756
  "contact": {
@@ -8786,10 +8920,21 @@
8786
8920
  "prefix": "OBI_IEE",
8787
8921
  "version": "2018-05-23"
8788
8922
  },
8923
+ "OBO": {
8924
+ "contact": {
8925
+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
8926
+ "name": "LOV Migration"
8927
+ },
8928
+ "description": "The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource for annotating biomedical investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. This ontology arose from the Functional Genomics Investigation Ontology (FuGO) and will contain both terms that are common to all biomedical investigations, including functional genomics investigations and those that are more domain specific.",
8929
+ "license": "CC-BY-4.0",
8930
+ "name": "Ontology for Biomedical Investigation",
8931
+ "prefix": "OBO",
8932
+ "version": "2019-08-06"
8933
+ },
8789
8934
  "OBOE": {
8790
8935
  "contact": {
8791
- "email": "mecum@nceas.ucsb.edu",
8792
- "name": "Bryce Mecum"
8936
+ "email": "jones@nceas.ucsb.edu",
8937
+ "name": "Matt Jones"
8793
8938
  },
8794
8939
  "description": "The Extensible Observation Ontology (OBOE) is a formal ontology for capturing the semantics of scientific observation and measurement. The ontology supports researchers to add detailed semantic annotations to scientific data, thereby clarifying the inherent meaning of scientific observations. The main concepts in OBOE include: - Observation: an event in which one or more measurements are taken - Measurement: the measured value of a property for a specific object or phenomenon (e.g., 3.2) - Entity: an object or phenomenon on which measurements are made (e.g., Quercus rubrum) - Characteristic: the property being measured (e.g., VolumetricDensity) - Standard: units and controlled vocabularies for interpreting measured values (e.g., g/cm^3) - Protocol: the procedures followed to obtain measurements (e.g., DensityProtocol2014) OBOE can characterize the context of an observation (e.g., space and time), as well as dependencies such as nested experimental observations. It includes an extensive set of unit definitions (e.g., grams of carbon per liter of seawater), and can facilitate automatic unit conversions (e.g., pounds to kilograms). OBOE can be easily extended to create Entities and Characteristics for specific research domains, making it both broadly applicable and highly customizable. OBOE is being used to improve data interpretation, facilitate reuse, and create precise and effective systems for data search and discovery.",
8795
8940
  "homepage": "https://github.com/NCEAS/oboe",
@@ -8821,7 +8966,7 @@
8821
8966
  "license": "CC0-1.0",
8822
8967
  "name": "Relations Ontology",
8823
8968
  "prefix": "OBOREL",
8824
- "version": "2025-06-24"
8969
+ "version": "2025-12-17"
8825
8970
  },
8826
8971
  "OBS": {
8827
8972
  "contact": {
@@ -9322,7 +9467,7 @@
9322
9467
  "publications": [
9323
9468
  "https://github.com/mcwdsi/OMRSE#list-of-publications"
9324
9469
  ],
9325
- "version": "2025-08-13"
9470
+ "version": "2026-01-06"
9326
9471
  },
9327
9472
  "OMV": {
9328
9473
  "contact": {
@@ -9910,6 +10055,17 @@
9910
10055
  ],
9911
10056
  "version": "2.0"
9912
10057
  },
10058
+ "OSDI": {
10059
+ "contact": {
10060
+ "email": "icasrod@ull.edu.es",
10061
+ "name": "Iván Castilla Rodríguez"
10062
+ },
10063
+ "description": "OSDi is an ontology designed to help the health technology assessment (HTA) community automate multiple stages in the development of economic evaluations. OSDi includes concepts and relationships that model the HTA domain, from characterizing diseases or affected populations to assessing interventions. OSDi serves as a supporting framework for the structured extraction of knowledge from literature and the automated generation of computational models using decision trees or discrete-event simulation., Ontología diseñada para recopilar e inferir los parámetros necesarios para crear una evaluación de tecnología sanitaria basada en simulación, Ontology designed for collecting and inferring the parameters required to create a simulation-based Health Technology Assesment",
10064
+ "license": "CC BY-NC-SA 4.0",
10065
+ "name": "Ontology for the Simulation of Diseases",
10066
+ "prefix": "OSDI",
10067
+ "version": "1.0"
10068
+ },
9913
10069
  "OTO": {
9914
10070
  "name": "Obesity Tracking Ontology",
9915
10071
  "prefix": "OTO"
@@ -10473,7 +10629,7 @@
10473
10629
  "license": "CC-BY-3.0",
10474
10630
  "name": "Pathogen Host Interaction Phenotype Ontology",
10475
10631
  "prefix": "PHIPO",
10476
- "version": "2025-10-29"
10632
+ "version": "2026-01-26"
10477
10633
  },
10478
10634
  "PHMAMMADO": {
10479
10635
  "contact": {
@@ -10572,7 +10728,7 @@
10572
10728
  "license": "CC-BY-4.0",
10573
10729
  "name": "Plant Stress Ontology",
10574
10730
  "prefix": "PLANTSO",
10575
- "version": "2025-12-16"
10731
+ "version": "2026-01-08"
10576
10732
  },
10577
10733
  "PLIO": {
10578
10734
  "contact": {
@@ -10789,7 +10945,7 @@
10789
10945
  "license": "CC-BY-4.0",
10790
10946
  "name": "Precision Fermentation Ontology",
10791
10947
  "prefix": "PREFER",
10792
- "version": "2025-12-22"
10948
+ "version": "2026-01-08"
10793
10949
  },
10794
10950
  "PREGONTO": {
10795
10951
  "contact": {
@@ -11096,7 +11252,7 @@
11096
11252
  "publications": [
11097
11253
  "https://doi.org/10.1080/09553002.2023.2173823"
11098
11254
  ],
11099
- "version": "2025-12-11"
11255
+ "version": "2026-01-15"
11100
11256
  },
11101
11257
  "RCD": {
11102
11258
  "contact": {
@@ -11386,6 +11542,18 @@
11386
11542
  "prefix": "ROO",
11387
11543
  "version": "0.5"
11388
11544
  },
11545
+ "ROR": {
11546
+ "contact": {
11547
+ "email": "cthoyt@gmail.com",
11548
+ "name": "Charles Tapley Hoyt"
11549
+ },
11550
+ "description": "ROR (Research Organization Registry) is a global, community-led registry of open persistent identifiers for research organizations. ROR is jointly operated by California Digital Library, Crossref, and Datacite. This artifact is produced by PyOBO in the https://github.com/biopragmatics/obo-db-ingest repository., community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, and Datacite.",
11551
+ "homepage": "https://ror.org",
11552
+ "name": "Research Organization Registry",
11553
+ "prefix": "ROR",
11554
+ "repository": "https://github.com/ror-community",
11555
+ "version": "2.0"
11556
+ },
11389
11557
  "ROS": {
11390
11558
  "contact": {
11391
11559
  "email": "jean-emmanuel.bibault@aphp.fr",
@@ -11465,6 +11633,17 @@
11465
11633
  "prefix": "RXNORM",
11466
11634
  "version": "RXNORM_20AA_240903F"
11467
11635
  },
11636
+ "S4EHAW": {
11637
+ "contact": {
11638
+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
11639
+ "name": "LOV Migration"
11640
+ },
11641
+ "description": "The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. \nSAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both:\n - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e.\n - Use case 1 ?elderly at home monitoring and support?,\n - Use case 2 ?monitoring and support of healthy lifestyles for citizens?,\n - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?.\n - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification.\n\nSAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology.\n![SAREF4SYST overview](diagrams/SAREF4EHAW_Model.jpg)\nFor semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure).\nFor embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e.\n - Use case 1 “elderly at home monitoring and support”,\n - Use case 2 “monitoring and support of healthy lifestyles for citizens”,\n - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”.\n - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509",
11642
+ "license": "https://forge.etsi.org/etsi-software-license",
11643
+ "name": "SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain",
11644
+ "prefix": "S4EHAW",
11645
+ "version": "v1.1.1"
11646
+ },
11468
11647
  "SALMO": {
11469
11648
  "name": "Salmonella Serotype vocabulary",
11470
11649
  "prefix": "SALMO"
@@ -11503,8 +11682,8 @@
11503
11682
  },
11504
11683
  "SASAP": {
11505
11684
  "contact": {
11506
- "email": "mecum@nceas.ucsb.edu",
11507
- "name": "Bryce Mecum"
11685
+ "email": "jones@nceas.ucsb.edu",
11686
+ "name": "Matt Jones"
11508
11687
  },
11509
11688
  "description": "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities.",
11510
11689
  "homepage": "https://github.com/DataONEorg/sem-prov-ontologies",
@@ -11693,8 +11872,8 @@
11693
11872
  },
11694
11873
  "SENSO": {
11695
11874
  "contact": {
11696
- "email": "mecum@nceas.ucsb.edu",
11697
- "name": "Bryce Mecum"
11875
+ "email": "jones@nceas.ucsb.edu",
11876
+ "name": "Matt Jones"
11698
11877
  },
11699
11878
  "description": "The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing.",
11700
11879
  "homepage": "https://github.com/DataONEorg/sem-prov-ontologies",
@@ -12751,9 +12930,9 @@
12751
12930
  "name": "Apollo McOwiti"
12752
12931
  },
12753
12932
  "description": "The Unwarranted Clinical Variation Analysis ontology (UCVA) is an application ontology that standardizes the representation of local context factors of UCV analysis. It includes numerous instances designed to support the extraction of these factors as covariates in UCV analysis, making it practical and easy to use",
12754
- "name": "Unwarranted Clinical Variation Analysis With Contextual Factors",
12933
+ "name": "Unwarranted Clinical Variation Analysis With Local Healthcare Contextual Factors",
12755
12934
  "prefix": "UCVA",
12756
- "version": "1.1"
12935
+ "version": "1.2"
12757
12936
  },
12758
12937
  "UGANDA_DISEASES": {
12759
12938
  "contact": {
@@ -12785,6 +12964,16 @@
12785
12964
  "prefix": "UMMS",
12786
12965
  "version": "0.3"
12787
12966
  },
12967
+ "UNIPROT": {
12968
+ "contact": {
12969
+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
12970
+ "name": "LOV Migration"
12971
+ },
12972
+ "description": "Properties and classes used for protein annotation",
12973
+ "name": "Uniprot Core Ontology",
12974
+ "prefix": "UNIPROT",
12975
+ "version": "v2012-10-03"
12976
+ },
12788
12977
  "UNITSONT": {
12789
12978
  "contact": {
12790
12979
  "email": "sivaram.arabandi@gmail.com",
@@ -12805,7 +12994,7 @@
12805
12994
  "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
12806
12995
  "name": "Units of Measurement Ontology",
12807
12996
  "prefix": "UO",
12808
- "version": "2023-05-25"
12997
+ "version": "2026-01-16"
12809
12998
  },
12810
12999
  "UPA": {
12811
13000
  "contact": {
@@ -12919,7 +13108,7 @@
12919
13108
  "license": "CC-BY-4.0",
12920
13109
  "name": "vfb_drivers",
12921
13110
  "prefix": "VFB_DRIVERS",
12922
- "version": "2026-01-05"
13111
+ "version": "2026-01-26"
12923
13112
  },
12924
13113
  "VHOG": {
12925
13114
  "contact": {
@@ -13015,7 +13204,7 @@
13015
13204
  "license": "CC-BY-4.0",
13016
13205
  "name": "Vaccine Ontology",
13017
13206
  "prefix": "VO",
13018
- "version": "2025-12-03"
13207
+ "version": "2026-01-23"
13019
13208
  },
13020
13209
  "VODANA-GENERAL": {
13021
13210
  "contact": {
@@ -13178,8 +13367,8 @@
13178
13367
  },
13179
13368
  "VT": {
13180
13369
  "contact": {
13181
- "email": "caripark@iastate.edu",
13182
- "name": "Cari Park"
13370
+ "email": "jekoltes@iastate.edu",
13371
+ "name": "James Koltes"
13183
13372
  },
13184
13373
  "description": "The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms.",
13185
13374
  "license": "CC-BY-4.0",
@@ -13187,7 +13376,8 @@
13187
13376
  "prefix": "VT",
13188
13377
  "publications": [
13189
13378
  "https://www.animalgenome.org/bioinfo/projects/vt/"
13190
- ]
13379
+ ],
13380
+ "version": "2026-02-03"
13191
13381
  },
13192
13382
  "VTO": {
13193
13383
  "contact": {
@@ -13420,6 +13610,16 @@
13420
13610
  "name": "CrossRef Funder Registry",
13421
13611
  "prefix": "XREF-FUNDER-REG"
13422
13612
  },
13613
+ "YOGA": {
13614
+ "contact": {
13615
+ "email": "mohamed-el-amine.boukerfa@inrae.fr",
13616
+ "name": "LOV Migration"
13617
+ },
13618
+ "description": "Yoga Ontology is the list of vocabularies that define the yogic practice. Where Yoga is the union of the mind and body.",
13619
+ "name": "Yoga Ontology",
13620
+ "prefix": "YOGA",
13621
+ "version": "0.1"
13622
+ },
13423
13623
  "YUNPING": {
13424
13624
  "contact": {
13425
13625
  "email": "liuyunping1112@outlook.com",
@@ -13429,15 +13629,6 @@
13429
13629
  "name": "yunping",
13430
13630
  "prefix": "YUNPING"
13431
13631
  },
13432
- "ZAHRAHADDAD": {
13433
- "contact": {
13434
- "email": "fkh510@gmail.com",
13435
- "name": "khosravi"
13436
- },
13437
- "description": "انتولوژی ارتباطات به زبان فارسی",
13438
- "name": "ارتباطات",
13439
- "prefix": "ZAHRAHADDAD"
13440
- },
13441
13632
  "ZEA": {
13442
13633
  "contact": {
13443
13634
  "email": "Leszek@missouri.edu",