bioregistry 0.13.15__py3-none-any.whl → 0.13.17__py3-none-any.whl

bioregistry/external/ols/processed.json

@@ -19,14 +19,6 @@
     "version": "2023-09-20",
     "version.iri": "http://purl.obolibrary.org/obo/ado/releases/2023-09-20/ado.owl"
   },
-  "aeo": {
-    "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
-    "download_owl": "http://purl.obolibrary.org/obo/aeo.owl",
-    "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
-    "name": "Anatomical Entity Ontology",
-    "prefix": "aeo",
-    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
-  },
   "afo": {
     "description": "Allotrope Merged Ontology Suite",
     "name": "Allotrope Merged Ontology Suite",
@@ -115,6 +107,7 @@
   },
   "bcgo": {
     "description": "An application ontology built for beta cell genomics studies.",
+    "download_owl": "http://purl.obolibrary.org/obo/bcgo.owl",
     "homepage": "https://github.com/obi-bcgo/bcgo",
     "name": "Beta Cell Genomics Ontology",
     "prefix": "bcgo",
@@ -152,13 +145,6 @@
     "version": "2019-08-26",
     "version.iri": "http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"
   },
-  "bila": {
-    "homepage": "http://4dx.embl.de/4DXpress",
-    "name": "Bilateria anatomy",
-    "prefix": "bila",
-    "version": "2019-06-12",
-    "version.iri": "http://purl.obolibrary.org/obo/bila/releases/2019-06-12/bila.owl"
-  },
   "biolink": {
     "download_rdf": "https://w3id.org/biolink/biolink-model.owl.ttl",
     "homepage": "https://biolink.github.io/biolink-model/",
@@ -205,6 +191,7 @@
   },
   "caro": {
     "description": "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies.",
+    "download_owl": "http://purl.obolibrary.org/obo/caro.owl",
     "homepage": "https://github.com/obophenotype/caro/",
     "name": "Common Anatomy Reference Ontology",
     "prefix": "caro",
@@ -266,7 +253,7 @@
     "name": "Chemical Entities of Biological Interest",
     "prefix": "chebi",
     "tracker": "https://github.com/ebi-chebi/ChEBI/issues",
-    "version": "247"
+    "version": "248"
   },
   "cheminf": {
     "description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.",
@@ -531,8 +518,8 @@
     "name": "Human Disease Ontology",
     "prefix": "doid",
     "tracker": "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues",
-    "version": "2025-11-25",
-    "version.iri": "http://purl.obolibrary.org/obo/doid/releases/2025-11-25/translations/doid-international.owl"
+    "version": "2025-12-23",
+    "version.iri": "http://purl.obolibrary.org/obo/doid/releases/2025-12-23/translations/doid-international.owl"
   },
   "dpo": {
     "description": "An ontology of commonly encountered and/or high level Drosophila phenotypes.",
@@ -642,15 +629,9 @@
     "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology",
     "name": "Human developmental anatomy, abstract",
     "prefix": "ehdaa2",
-    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
-  },
-  "emap": {
-    "description": "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).",
-    "homepage": "http://emouseatlas.org",
-    "name": "Mouse gross anatomy and development, timed",
-    "prefix": "emap",
-    "version": "2020-04-13",
-    "version.iri": "http://purl.obolibrary.org/obo/emap/releases/2020-04-13/emap.owl"
+    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
+    "version": "2024-01-11",
+    "version.iri": "http://purl.obolibrary.org/obo/ehdaa2/releases/2024-01-11/ehdaa2.owl"
   },
   "emapa": {
     "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.",
@@ -659,8 +640,8 @@
     "name": "Mouse Developmental Anatomy Ontology",
     "prefix": "emapa",
     "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
-    "version": "2023-11-14",
-    "version.iri": "http://purl.obolibrary.org/obo/emapa/releases/2023-11-14/emapa.owl"
+    "version": "2025-12-30",
+    "version.iri": "http://purl.obolibrary.org/obo/emapa/releases/2025-12-30/emapa.owl"
   },
   "emi": {
     "contact": "kru@sib.swiss",
@@ -787,21 +768,6 @@
     "version": "2025-10-16",
     "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2025-10-16/fbdv.owl"
   },
-  "fbsp": {
-    "description": "The taxonomy of the family <i>Drosophilidae</i> (largely after Baechli) and of other taxa referred to in FlyBase.",
-    "homepage": "http://www.flybase.org/",
-    "name": "Fly taxonomy",
-    "prefix": "fbsp",
-    "version": "2017-11-19",
-    "version.iri": "http://purl.obolibrary.org/obo/fbsp/releases/2017-11-19/fbsp.owl"
-  },
-  "fix": {
-    "description": "An ontology of physico-chemical methods and properties.",
-    "download_owl": "http://purl.obolibrary.org/obo/fix.owl",
-    "homepage": "http://www.ebi.ac.uk/chebi",
-    "name": "Physico-chemical methods and properties",
-    "prefix": "fix"
-  },
   "flopo": {
     "description": "Traits and phenotypes of flowering plants occurring in digitized Floras",
     "download_owl": "http://purl.obolibrary.org/obo/flopo.owl",
@@ -836,8 +802,8 @@
     "name": "Food Ontology",
     "prefix": "foodon",
     "tracker": "https://github.com/FoodOntology/foodon/issues/",
-    "version": "2025-08-01",
-    "version.iri": "http://purl.obolibrary.org/obo/foodon/releases/2025-08-01/foodon.owl"
+    "version": "2025-12-30",
+    "version.iri": "http://purl.obolibrary.org/obo/foodon/releases/2025-12-30/foodon.owl"
   },
   "fovt": {
     "description": "These are the terms that are improted for FOVT to describe vertebrate traits.",
@@ -869,14 +835,6 @@
     "version": "2024-04-19",
     "version.iri": "http://purl.obolibrary.org/obo/gallont/releases/2024-04-19/gallont.owl"
   },
-  "gaz": {
-    "description": "A gazetteer constructed on ontological principles. The countries are actively maintained.",
-    "download_owl": "http://purl.obolibrary.org/obo/gaz.owl",
-    "homepage": "http://environmentontology.github.io/gaz/",
-    "name": "Gazetteer",
-    "prefix": "gaz",
-    "tracker": "https://github.com/EnvironmentOntology/gaz/issues"
-  },
   "gecko": {
     "description": "An ontology to represent genomics cohort attributes.",
     "download_owl": "http://purl.obolibrary.org/obo/gecko.owl",
@@ -1025,14 +983,6 @@
     "uri_format": "https://www.genenames.org/data/genegroup/#!/group/$1",
     "version.iri": "https://w3id.org/biopragmatics/resources/hgnc.genegroup/2025-10-07/hgnc.genegroup.ofn"
   },
-  "hom": {
-    "description": "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.",
-    "download_owl": "http://purl.obolibrary.org/obo/hom.owl",
-    "homepage": "https://github.com/BgeeDB/homology-ontology",
-    "name": "Homology Ontology",
-    "prefix": "hom",
-    "tracker": "https://github.com/BgeeDB/homology-ontology/issues"
-  },
   "hp": {
     "description": "The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities and clinical features encountered in human disease.",
     "download_owl": "http://purl.obolibrary.org/obo/hp/hp-international.owl",
@@ -1184,14 +1134,6 @@
     "prefix": "lipidmaps",
     "uri_format": "https://www.lipidmaps.org/rdf/$1"
   },
-  "ma": {
-    "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).",
-    "download_owl": "http://purl.obolibrary.org/obo/ma.owl",
-    "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
-    "name": "Mouse adult gross anatomy",
-    "prefix": "ma",
-    "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues"
-  },
   "mamo": {
     "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
     "download_rdf": "https://raw.githubusercontent.com/EBISPOT/mamo/main/mamo.rdf",
@@ -1331,8 +1273,8 @@
     "name": "Measurement method ontology",
     "prefix": "mmo",
     "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues",
-    "version": "2.168",
-    "version.iri": "http://purl.obolibrary.org/obo/mmo/2.168/mmo.owl"
+    "version": "2.169",
+    "version.iri": "http://purl.obolibrary.org/obo/mmo/2.169/mmo.owl"
   },
   "mmusdv": {
     "description": "Life cycle stages for Mus Musculus",
@@ -1361,8 +1303,8 @@
     "name": "Mondo Disease Ontology",
     "prefix": "mondo",
     "tracker": "https://github.com/monarch-initiative/mondo/issues",
-    "version": "2025-12-02",
-    "version.iri": "http://purl.obolibrary.org/obo/mondo/releases/2025-12-02/mondo-international.owl"
+    "version": "2026-01-06",
+    "version.iri": "http://purl.obolibrary.org/obo/mondo/releases/2026-01-06/mondo-international.owl"
   },
   "mop": {
     "contact": "chemistry-ontologies@googlegroups.com",
@@ -1549,8 +1491,8 @@
     "name": "Ontology for Biomedical Investigations",
     "prefix": "obi",
     "tracker": "http://purl.obolibrary.org/obo/obi/tracker",
-    "version": "2025-10-14",
-    "version.iri": "http://purl.obolibrary.org/obo/obi/2025-10-14/obi.owl"
+    "version": "2025-12-18",
+    "version.iri": "http://purl.obolibrary.org/obo/obi/2025-12-18/obi.owl"
   },
   "obib": {
     "description": "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.",
@@ -1617,8 +1559,8 @@
     "name": "OHMI: Ontology of Host-Microbiome Interactions",
     "prefix": "ohmi",
     "tracker": "https://github.com/ohmi-ontology/ohmi/issues",
-    "version": "2019-09-17",
-    "version.iri": "http://purl.obolibrary.org/obo/ohmi/2019-09-17/ohmi.owl"
+    "version": "2025-12-28",
+    "version.iri": "http://purl.obolibrary.org/obo/ohmi/2025-12-28/ohmi.owl"
   },
   "ohpi": {
     "description": "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).",
@@ -1654,6 +1596,7 @@
   },
   "omiabis": {
     "description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)",
+    "download_owl": "http://purl.obolibrary.org/obo/omiabis.owl",
     "homepage": "https://github.com/OMIABIS/omiabis-dev",
     "name": "Ontologized MIABIS",
     "prefix": "omiabis",
@@ -1697,8 +1640,8 @@
     "name": "Ontology for Modeling and Representation of Social Entities",
     "prefix": "omrse",
     "tracker": "https://github.com/mcwdsi/OMRSE/issues",
-    "version": "2025-08-13",
-    "version.iri": "http://purl.obolibrary.org/obo/omrse/releases/2025-08-13/omrse.owl"
+    "version": "2026-01-06",
+    "version.iri": "http://purl.obolibrary.org/obo/omrse/releases/2026-01-06/omrse.owl"
   },
   "one": {
     "description": "An ontology to standardize research output of nutritional epidemiologic studies.",
@@ -2038,12 +1981,6 @@
     "prefix": "reto",
     "uri_format": "http://purl.obolibrary.org/obo/ReTO_$1"
   },
-  "rex": {
-    "description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.",
-    "download_owl": "http://purl.obolibrary.org/obo/rex.owl",
-    "name": "Physico-chemical process",
-    "prefix": "rex"
-  },
   "rexo": {
     "contact": "vladimir.n.mironov@gmail.com",
     "description": "Regulation of Gene Expression",
@@ -2080,8 +2017,8 @@
     "name": "Rat Strain Ontology",
     "prefix": "rs",
     "tracker": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues",
-    "version": "6.263",
-    "version.iri": "http://purl.obolibrary.org/obo/rs/6.263/rs.owl"
+    "version": "6.264",
+    "version.iri": "http://purl.obolibrary.org/obo/rs/6.264/rs.owl"
   },
   "rxno": {
     "contact": "chemistry-ontologies@googlegroups.com",
@@ -2272,6 +2209,7 @@
   },
   "tao": {
     "description": "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa",
+    "download_owl": "http://purl.obolibrary.org/obo/tao.owl",
     "homepage": "http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology",
     "name": "Teleost Anatomy Ontology",
     "prefix": "tao",
@@ -2419,6 +2357,7 @@
   },
   "vsao": {
     "description": "Vertebrate skeletal anatomy ontology.",
+    "download_owl": "http://purl.obolibrary.org/obo/vsao.owl",
     "homepage": "https://www.nescent.org/phenoscape/Main_Page",
     "name": "Vertebrate Skeletal Anatomy Ontology-",
     "prefix": "vsao",
@@ -2502,8 +2441,8 @@
     "name": "Experimental condition ontology",
     "prefix": "xco",
     "tracker": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues",
-    "version": "4.221",
-    "version.iri": "http://purl.obolibrary.org/obo/xco/4.221/xco.owl"
+    "version": "4.222",
+    "version.iri": "http://purl.obolibrary.org/obo/xco/4.222/xco.owl"
   },
   "xlmod": {
     "contact": "psidev-ms-vocab@lists.sourceforge.net",
@@ -2546,14 +2485,6 @@
     "version": "2025-09-05",
     "version.iri": "http://purl.obolibrary.org/obo/zfa/releases/2025-09-05/zfa.owl"
   },
-  "zfs": {
-    "description": "Developmental stages of the Zebrafish",
-    "download_owl": "http://purl.obolibrary.org/obo/zfs.owl",
-    "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
-    "name": "Zebrafish developmental stages ontology",
-    "prefix": "zfs",
-    "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues"
-  },
   "zp": {
     "description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.",
     "download_owl": "http://purl.obolibrary.org/obo/zp.owl",

bioregistry/external/re3data/processed.json

@@ -12270,7 +12270,7 @@
     "prefix": "r3d100011332",
     "synonyms": [
       "CLARIN INT Center",
-      "CLARIN IvdNT-portaal"
+      "CLARIN INT-portaal"
     ]
   },
   "r3d100011333": {
@@ -14728,7 +14728,7 @@
     ]
   },
   "r3d100011673": {
-    "description": "MISTRALS database is a distributed system, that enables users to access datasets produced by all the projects  (ChArMEx, HyMeX, MERMex, TerMex, CORSiCA, EMSO and MOOSE) and stored in different data centres. MISTRALS (Mediterranean Integrated STudies at Regional And Local Scales) is a decennial program for systematic observations and research dedicated to the understanding of the Mediterranean Basin environmental process under the planet global change.\n\nIt aims to coordinate, across the Mediterranean Basin, interdisciplinary research on atmosphere, hydrosphere, lithosphere and paleo-climate, including environmental ecology and social sciences. The objective is to achieve a better understanding of the mechanisms shaping and influencing landscape, environment and human impact of this eco-region.",
+    "description": "<<<!!!<<< This repository is closed>>>!!!>>>MISTRALS database is a distributed system, that enables users to access datasets produced by all the projects  (ChArMEx, HyMeX, MERMex, TerMex, CORSiCA, EMSO and MOOSE) and stored in different data centres. MISTRALS (Mediterranean Integrated STudies at Regional And Local Scales) is a decennial program for systematic observations and research dedicated to the understanding of the Mediterranean Basin environmental process under the planet global change.\n\nIt aims to coordinate, across the Mediterranean Basin, interdisciplinary research on atmosphere, hydrosphere, lithosphere and paleo-climate, including environmental ecology and social sciences. The objective is to achieve a better understanding of the mechanisms shaping and influencing landscape, environment and human impact of this eco-region.",
     "doi": "10.17616/R3Z92B",
     "homepage": "https://mistrals.sedoo.fr/en/homepage/",
     "name": "MISTRALS database",
@@ -35687,5 +35687,38 @@
     "synonyms": [
       "TSIS"
     ]
+  },
+  "r3d100014752": {
+    "description": "The RAKIP-Web Model Repository is a specialized, web-based repository for sharing and discovering computational models used in food safety risk assessment. Hosted by the German Federal Institute for Risk Assessment (BfR), it serves as the central platform for the RAKIP (Risk Assessment Modelling and Knowledge Integration Platform) initiative. Its core purpose is to foster transparency, reproducibility, and reuse in predictive microbiology and chemical exposure assessment by providing a curated, standardized collection of models. The repository primarily hosts models that comply with the international FSKX (Food Safety Knowledge Markup Language) standard, ensuring they are interoperable and executable with compatible software tools like FSK-Lab. It features a public area for discovering models and a protected area for submission and curation, governed by a formal curation policy to maintain quality and standardization.",
+    "doi": "10.17616/R31NJNVK",
+    "homepage": "https://knime.bfr.berlin/landingpage/RAKIP-Model-Repository",
+    "license": "other",
+    "name": "RAKIP-Web Model Repository",
+    "prefix": "r3d100014752"
+  },
+  "r3d100014754": {
+    "description": "The Hidrográfico+ is a marine geospatial data infrastructure created to facilitate access to data produced by the Instituto Hidrográfico, promoting the blue economy and contributing to ocean science and sustainability. The Hydrographic+ is maintained by the Instituto Hidrográfico, the Portuguese Hydrographic Office, which undertakes research, analysis, and knowledge dissemination in the fields of marine sciences and technologies, alongside its responsibilities as the national hydrographic authority. In this way, the infrastructure supports a broad spectrum of scientific research with diverse technical applications.\nHydrographic+ provides organized and interoperable access to marine datasets, including hydrography, oceanography, marine chemistry, marine geology, and navigation. All data and services are accompanied by metadata records describing data access links and conditions of use.",
+    "doi": "10.17616/R31NJNVM",
+    "homepage": "https://metadata.hidrografico.pt/",
+    "license": "CC",
+    "name": "Hidrográfico+",
+    "prefix": "r3d100014754"
+  },
+  "r3d100014757": {
+    "description": "Gutenberg Open Science is the institutional repository of Johannes Gutenberg University Mainz, focusing on publications as well as research data.",
+    "doi": "10.17616/R31NJNVP",
+    "homepage": "https://openscience.ub.uni-mainz.de/home",
+    "license": "Copyrights",
+    "name": "Gutenberg Open Science",
+    "prefix": "r3d100014757"
+  },
+  "r3d100014761": {
+    "description": "ZB MED Digital Long-Term Archive preserves digital objects in ZB MED’s holdings, which contain open access publications, digitized material and eJournals and eBooks licensed by ZB MED. All digital material covers topics from subject area life sciences and is accessible by various representation platforms at ZB MED. ZB MED has assumed responsibility for the long-term preservation and availability of digital materials it collects, as well as their interpretability by relevant target groups. As such, it has committed itself to maintain necessary infrastructure and provide necessary material and human resources. Research data is accessible at ZB MED via https://www.re3data.org/repository/r3d100013523 https://repository.publisso.de/resource?query[0][term]=%22Forschungsdaten%22 and is automatically transferred from the repository into ZB MED Digital Long-Term Archive.",
+    "homepage": "https://www.publisso.de/en/digital-preservation",
+    "name": "ZB MED Digital Long-Term Archive",
+    "prefix": "r3d100014761",
+    "synonyms": [
+      "Digital Preservation at ZB MED"
+    ]
   }
 }

bioregistry/version.py

@@ -11,7 +11,7 @@ __all__ = [
     "get_version",
 ]
 
-VERSION = "0.13.15"
+VERSION = "0.13.17"
 
 
 def get_git_hash() -> str | None:

{bioregistry-0.13.15.dist-info → bioregistry-0.13.17.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.15
+Version: 0.13.17
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt

{bioregistry-0.13.15.dist-info → bioregistry-0.13.17.dist-info}/RECORD

@@ -8,7 +8,7 @@ bioregistry/app/__init__.py,sha256=Y2NMn6HNPdg398xdizYaS2tjSk4JX_luU1qehve5jXk,2
 bioregistry/app/api.py,sha256=1ad-szASI6C7dxpqZfPGEZdf2HEJ6gk470xwyljiPrw,19080
 bioregistry/app/cli.py,sha256=Zu3Kqf8TGONpxuWSfjLBSz-ohJVju1gugo5SZGjNhFQ,2306
 bioregistry/app/constants.py,sha256=zu6C-hrYAi7XOY-REAp1KjwNjer7CcTJlsZ0ov2w5Q8,2015
-bioregistry/app/impl.py,sha256=cNdQYoHcDs3VLUnIlilNE1KSLUnJ-em2ftaDCvLr8X0,20941
+bioregistry/app/impl.py,sha256=L1e8GHJjn-YbcbjOl87PO1OGa_WaKa6vbfFg4fdZHXA,20940
 bioregistry/app/proxies.py,sha256=AlzewfUv7KFlfN_nzFhoE8ezOSsaugBMlvpfbDyeT3c,278
 bioregistry/app/static/czi.svg,sha256=BHWSlNids1StJBHIvwIidh80gSO5mF_SD_QPy4PHpaQ,12753
 bioregistry/app/static/dalia.png,sha256=SwxRmdiYSRL1uxn_8hcUIBorIefpf49cCsoV5IdDieU,3320
@@ -69,7 +69,6 @@ bioregistry/constants.py,sha256=_E6YOFl7LtdbFllhapD0qfWTHUVUVNvXAtArpQX1o34,1191
 bioregistry/curation/__init__.py,sha256=X_Qod6ZnK31NYxKw_hwOXc35TI3HBZQzkp1URkmQU-I,22
 bioregistry/curation/add_cessda.py,sha256=Jx2H_jY9E3ZRBG78kHoY9DhcN1P7-qBr_iWV_y3HUMg,4204
 bioregistry/curation/add_co_providers.py,sha256=s14caK1lCRLBEW_NsbgIV93eqoBpr56kD1Ted5_KD8Y,1216
-bioregistry/curation/add_descriptions_from_gs.py,sha256=v5qomc7NSdPiSHOJZAsf7Jsc7Ia7Pcz7xu0e7Ejso6M,1055
 bioregistry/curation/add_examples.py,sha256=3S2F4BrbJebWG32AvnBG4rb0rzTC2mBuZzVucx58YcA,1295
 bioregistry/curation/add_examples_from_ols.py,sha256=g09hNkni-4jR_hzaJ-IYN8J8TV2Jk91htwXPDwi85As,2961
 bioregistry/curation/add_linkml.py,sha256=mOAFlovm6RgQwAozOCNF0JjduKMx_IMa2N797pN4GJ4,2475
@@ -78,7 +77,7 @@ bioregistry/curation/add_ontology_regexes.py,sha256=QdsMrma7meYPK_xCLj8U13XPM6ay
 bioregistry/curation/add_provider_status_curations.py,sha256=_ydRS1AT4z06z1Ur9If7eyuSmWRoCMZQGM9t2dpofdI,1956
 bioregistry/curation/add_sweet.py,sha256=ooVbCzzoicj1Q0xsYCYF4CSt4GKLQUCMSy-lfiCue2E,5060
 bioregistry/curation/add_wikidata_database.py,sha256=TBzaBmTreXcxZII2ihSAu2iK5leSaiZ36k9e-In7J-4,1394
-bioregistry/curation/bulk_import.py,sha256=RwWPxtlV9HpIIdIu4JjKB_DgtP200sLQ5xzwNAiCcFg,2710
+bioregistry/curation/bulk_import.py,sha256=yaQSCwfK5j6vQMH_fYr67MgIblM_s6fwEse8AedGk0Q,2696
 bioregistry/curation/clean_licenses.py,sha256=01fy-DlpmkbyYV-F2V-2ofZ97D0nSFpJx4SCo0PcL5g,627
 bioregistry/curation/clean_name_suffixes.py,sha256=ItqqXYJKHymNy2-T37wwvFSSaWM7uuMeF2Im3CWZ0oI,729
 bioregistry/curation/clean_publications.py,sha256=u3JOvo6ZQ2A8aY4ikGOOdxHLYeMjCGhA1SQ7yjfjdeY,716
@@ -103,11 +102,11 @@ bioregistry/curation/suggest_author_curation.py,sha256=ecD9v6yOx5LbTAi0_wNhk9fKO
 bioregistry/curation/suggest_uniprot_providers.py,sha256=b9_LZ9hjavJ0iigGThZJuH_wEjVWCu3njJWdwvBSXj4,835
 bioregistry/data/README.md,sha256=vlWWGV0jOmcm4wu1hGUq01jZa41rDwfqIDffVs2somg,1796
 bioregistry/data/__init__.py,sha256=6oMVGRsmEoVd5caRr1Q_Zk-u3rOj382rIi2AoGMEVc8,41
-bioregistry/data/bioregistry.json,sha256=jhD_Y6gXKekVIzUWZrOsx5_kO_gSbJeeil5I8ZtZMTs,6396156
+bioregistry/data/bioregistry.json,sha256=lYPPNW3jpRTzVUUrfhJHhON2CylF1MlJDckzptmk1L8,6406821
 bioregistry/data/collections.json,sha256=-v40j9JXvijqoMDBGFOMY-tQC_AddlfFayVI5c-U4b0,46118
 bioregistry/data/contexts.json,sha256=nUHDGrZe2oF9P5I8CeMoEYsaUfwNweTc5n7t8Hj2iJw,1436
 bioregistry/data/curated_mappings.sssom.tsv,sha256=n5l_fOSDmzV23gUQhgnefdqqJGyLwyH7YE9FGGIn3Gc,45034
-bioregistry/data/curated_papers.tsv,sha256=Ldb0f42mu6gYWbe6bwLSo0xurQ9NE3MXW3PqJrmb1BU,27481
+bioregistry/data/curated_papers.tsv,sha256=nbEE34uWes4K-PFVnfJGJ4OmxlK17x2_3jt5A9rIw1c,27640
 bioregistry/data/metaregistry.json,sha256=Icu0SHyyTHfHRkCne5itdjPy-1fNAk72Gf09o-fBryA,63800
 bioregistry/export/__init__.py,sha256=EfApHN9voMJt4sr3T-U6r50szl7I3QBnaw0s7KKjkek,35
 bioregistry/export/__main__.py,sha256=u9XDrUWAC952AzgUNHlfFPhDl0tBPVv_PChPRxKJhOY,96
@@ -123,20 +122,20 @@ bioregistry/export/warnings_export.py,sha256=LH3YsTzlJfi_KYEEvU0HzGScp0EuR0pei7p
 bioregistry/export/yaml_export.py,sha256=08W93quZWirWv5TltvgltKxWbF1nMlzrlWsVocc7T8k,1308
 bioregistry/external/__init__.py,sha256=cjcfwBprqBx_X8IJh6Vug6gGgbCf5vLcJAe4Ql_0Cuc,2989
 bioregistry/external/aberowl/__init__.py,sha256=5xOVxU7SMXlTvI0zWi6cMbiga1jVXD0Joh-N_rBH1As,2475
-bioregistry/external/aberowl/processed.json,sha256=Dg_un0Hjb0aW76bwUaHtxcIg23i20RYgiDqGW4qoTlM,754368
+bioregistry/external/aberowl/processed.json,sha256=BJIfFppEJrpiG5pWvgDTadMk7-VC9ubJ7NXXM_iV7mw,756547
 bioregistry/external/align.py,sha256=x2N910eaTHFR5BnvwuWRC9Me2z2PsKPaBeK78inoujU,2101
 bioregistry/external/alignment_utils.py,sha256=CcSFc6bMiyTiLsASKsSVpaEBoK5UC36xIffTdzcLvw8,11752
 bioregistry/external/bartoc/__init__.py,sha256=lbtUoxCLyWFIMkmIxPA7TTmbgoDEQTfd0GQcclBtEcU,3173
-bioregistry/external/bartoc/processed.json,sha256=qEYeRezywW3_kdr6Dzzb1qGJ0e8JbZJldaA2dXQZxfE,2678878
+bioregistry/external/bartoc/processed.json,sha256=IFy1fIcCGb_7F1dVUGEOuimfQ5DxQkAJiARFub4B4D0,2680137
 bioregistry/external/biocontext/__init__.py,sha256=gLytdKfeN2dFIW_ugl4W5hJetfciMs171uzeMiHMCdo,2589
 bioregistry/external/biocontext/processed.json,sha256=XRUGK63S5OVRBS0BrbUjepsFI8NPVVVZFmeWbbfXWUQ,74913
 bioregistry/external/biolink/__init__.py,sha256=o57Dhg5Z65oYYe-RU0S6q0OKjc8p-uTk3s3iqroAUXM,2613
 bioregistry/external/biolink/processed.json,sha256=vGT0La8q9dJ1TTwRM9ZNmT7HRPCFdVqA_oQPpoT2LeI,10725
 bioregistry/external/biolink/processing_biolink.json,sha256=lITU-JFBbXU0FEQR3q1Y9A8E_2YxRHyHnzogqadGKtI,508
 bioregistry/external/bioportal/__init__.py,sha256=zXL7D5eNPUHnlseEiIsuGQk66RnIE5QWXYDLDj2Lq74,7645
-bioregistry/external/bioportal/agroportal.json,sha256=bh7y9ivB2RMY-z-PyWZ_650eDdrQc_O-Xmjwr2i86w8,215764
+bioregistry/external/bioportal/agroportal.json,sha256=EjfMujvGPYsQ4GByMsriGK2kdY9N1tnIbNVCeyo2QSA,224565
 bioregistry/external/bioportal/agroportal.py,sha256=Y5KGAkLqSoSS9czW0oFe7CNLzsiByLxtC3LLb5HB3XQ,147
-bioregistry/external/bioportal/bioportal.json,sha256=MSNIlCR4BHCbYIEnvJIl6waeweai7BrLQNUjYMn8gyI,761456
+bioregistry/external/bioportal/bioportal.json,sha256=TgHHP62EUu_4PBhEVWMA_ehfhRh9TehvG0nZRXIpKNI,769755
 bioregistry/external/bioportal/bioportal.py,sha256=8YSiaisYPPc3TkxE7GPrZz2s-mRjV6nXAXzmJ5U0NBs,1011
 bioregistry/external/bioportal/ecoportal.json,sha256=wl0u39PUSG0k9MCdYmDcliff--H7JWnuNzGw8aOgzIA,59747
 bioregistry/external/bioportal/ecoportal.py,sha256=WqjiWyBlKHayLt8PtEkem4TqtcBc8GRp9mYP-msIHMY,144
@@ -149,16 +148,16 @@ bioregistry/external/cropoct/processed.json,sha256=EHkMx_ywPXsGtXSz9DK-DWDMXEi4_
 bioregistry/external/edam/__init__.py,sha256=4rkiMRlFjfEcYXKx8TM8KWPV2H58kxr0cavJoK2LrbQ,1715
 bioregistry/external/edam/processed.json,sha256=3jmBdNwwCXtXZw4jf40riBOHC_HE2GAnYIcnStm4N0k,45513
 bioregistry/external/fairsharing/__init__.py,sha256=bk4EfQIA40mU2xkVYq_Ipl4Mnq79qUVBMfekxU4woqE,5364
-bioregistry/external/fairsharing/processed.json,sha256=JHFZ1ux5ska7vpV_ScInaajbBKqSLtuHCJ81bkez6Qg,912473
+bioregistry/external/fairsharing/processed.json,sha256=xy6a1h65Q4hK4f7FFXxXEv_2cyy17AFCmu1FRl6mX24,914854
 bioregistry/external/go/__init__.py,sha256=ZrVhZfi0uowNWxymNarFm8TeqxFFRE1HzXB-5kBcz98,4104
 bioregistry/external/go/processed.json,sha256=9xHAqVtUgwPmZZP3byxf585MC3UABNMVoZ2ImW8LTnA,146014
 bioregistry/external/go/processing_go.json,sha256=fuubtH1RyiBWFrMnZq9iT83dlN_uFtyX5uZPVlfrwfo,137
 bioregistry/external/hl7/OID_Report.csv,sha256=7Z2mu6gRb-KIEIkniwfcF_KD3ycL6SBfPEBDOxRlJlI,319976
 bioregistry/external/hl7/__init__.py,sha256=YfwcyCp1IzdxsCVVw9Dy77NS3u4q_T0DeyQrTjNB7FQ,2131
-bioregistry/external/integbio/__init__.py,sha256=Bpsf4-rgPixVa-_YW0IGYuLVkQ9xRpY1DVKd_Joiuz8,5268
-bioregistry/external/integbio/processed.json,sha256=ecTjDL99E3wkgP5olQYcrWaElQShdoxyGbz1TYDuBH4,1796180
+bioregistry/external/integbio/__init__.py,sha256=1damv1id7gp5tQz_zGITetaZWkJXJAehTtQCgl8jtcg,5343
+bioregistry/external/integbio/processed.json,sha256=67es5FzpRJpwlAu_hsxOHQM4t0IcoEmk10LHfJyViZk,1802081
 bioregistry/external/lov/__init__.py,sha256=18vZoxRhvX6UqQLAHmyHEMrIB_8Xe4KSGXSNd_PdCw0,2655
-bioregistry/external/lov/processed.json,sha256=JdgO8fz382akriT4y9ioS0xXwATXuxYqmCvm7EyDzLo,481402
+bioregistry/external/lov/processed.json,sha256=rOwow8lO53WSg4JsgXfZw3IRO658-M-PY2infvrklT8,482899
 bioregistry/external/miriam/__init__.py,sha256=SJMcH2Nh00tT0uCfl4yYCgsi3XC1OD6w1JnAZnEzzJ0,4768
 bioregistry/external/miriam/processed.json,sha256=0IUtSsNECP-4GVbz6Ol3QIFUbsn-m-fZWvjqnV2P10M,596526
 bioregistry/external/n2t/__init__.py,sha256=hQhp_yhOMvXANuuwSDniTysHkwnx61LpTca-E5b9aMY,2954
@@ -168,7 +167,7 @@ bioregistry/external/ncbi/processed.json,sha256=2bnV32V-vMJmpQDMTEQkdhG28A3Vvfs_
 bioregistry/external/obofoundry/__init__.py,sha256=XWZpAfCCJCtOxFUvA3xRxgMaFLerHQZoUzByq-AQ1mg,5351
 bioregistry/external/obofoundry/processed.json,sha256=M2OranPVoCFGPo-skfff-WF7nxos3A7tCnT16wb_0VE,225644
 bioregistry/external/ols/__init__.py,sha256=EpX_3gpB6Lc5PpqXF_tvAmr57fAVbBtQqswDlrfTC7w,11541
-bioregistry/external/ols/processed.json,sha256=2nkQhrmJc5WBABa_VXzl_1YZ0aWdWqYJ-W76JnYRCzA,163908
+bioregistry/external/ols/processed.json,sha256=_bmEIKG4obQf12ZoBdG5z4UG9QZ9pzBMjohQ5lmcWlo,160849
 bioregistry/external/ols/processing_ols.json,sha256=nxKL7Mi12vmo7v2LWSx_Ryd8U2bPuebN1kBW1FYHSPs,35976
 bioregistry/external/ols/tib-processed.json,sha256=LQvtTlcAavxLirqkylBkhlcTsG9JtXBbB4eNQ7KoKtI,198055
 bioregistry/external/ols/tib-processing-config.json,sha256=qQsdTmQTnM-ZCLj-rmztJV25lrJqQcg9esQbYGVB1f4,29
@@ -179,7 +178,7 @@ bioregistry/external/pathguide/__init__.py,sha256=Q6p01FuBU-PxSJUFrZP-fqE_ZOV_lM
 bioregistry/external/prefixcommons/__init__.py,sha256=Nka5nbxg0Nh5YSbvYut2p6GtxXXA5dnMt_HPRlnXgCA,9154
 bioregistry/external/prefixcommons/processed.json,sha256=RlHKDfPca_f38FOwx7UTU_HUlP4Zuq6_jvLuTbx9wh0,514876
 bioregistry/external/re3data/__init__.py,sha256=XyKol_Hhej4kbc56d6COc6MjoUBVrThrOeMurzciRwM,6578
-bioregistry/external/re3data/processed.json,sha256=LNCZhhFZg0Pcp91G3WvnFjOriKGrUfDDmcExFYGT-as,2730666
+bioregistry/external/re3data/processed.json,sha256=Hxm_5Rlg2m-8DC6phLiMlzYUC0gR4pxlrYi60p3y94A,2734520
 bioregistry/external/rrid/__init__.py,sha256=NEKpP5N2xPt5K4hw8fsDEbOmwfh8yLoHC4Yl50iSbVQ,3780
 bioregistry/external/togoid/__init__.py,sha256=AUZn69q0Di7o5yb11kGyi8QF9RIFkgiAvZkgnjkmfHo,3506
 bioregistry/external/togoid/processed.json,sha256=h2LeypcVdJvL6wByOo8lJeLCFr4_UQb1EfVR6FjJXEg,81494
@@ -222,8 +221,8 @@ bioregistry/utils.py,sha256=UtoHc3XzaUxv5aayJkcGyE5qjYP36SjvnVGt9sG2X-U,9207
 bioregistry/validate/__init__.py,sha256=ffUYuZYBcPGl1Ggw65DB9NZO4ma1tlsflRJRpKE4JWw,28
 bioregistry/validate/cli.py,sha256=nDCdMfANsxUZ-l1LTmcHgnDRr3uXqqgy6zr0uwfSjwI,3745
 bioregistry/validate/utils.py,sha256=7U2az-Y5IzdNEYmTQJSbfemdHZG0mh4k7nP61rpVtjI,10588
-bioregistry/version.py,sha256=cRLNPd6KRjx1SaQWO4B8upMn0zPstT2wnBhfiCxynaA,1018
-bioregistry-0.13.15.dist-info/WHEEL,sha256=ZyFSCYkV2BrxH6-HRVRg3R9Fo7MALzer9KiPYqNxSbo,79
-bioregistry-0.13.15.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
-bioregistry-0.13.15.dist-info/METADATA,sha256=BR-3LM1fct4gORmxk0ZctXxQPDSAQ-cQYWk_DZILaeM,36840
-bioregistry-0.13.15.dist-info/RECORD,,
+bioregistry/version.py,sha256=YNnMEZAm5fW7JSqMUSZSdkLHrkgyY_bZKuy30zXLhpY,1018
+bioregistry-0.13.17.dist-info/WHEEL,sha256=eycQt0QpYmJMLKpE3X9iDk8R04v2ZF0x82ogq-zP6bQ,79
+bioregistry-0.13.17.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
+bioregistry-0.13.17.dist-info/METADATA,sha256=jZeEOEwFB6Kl1yx1RxQ53PtgXXODEDnQorOUwod9waw,36840
+bioregistry-0.13.17.dist-info/RECORD,,

{bioregistry-0.13.15.dist-info → bioregistry-0.13.17.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: uv 0.9.18
+Generator: uv 0.9.24
 Root-Is-Purelib: true
 Tag: py3-none-any

bioregistry/curation/add_descriptions_from_gs.py

@@ -1,38 +0,0 @@
-"""Add descriptions from a google curation sheet."""
-
-import click
-import pandas as pd
-
-import bioregistry
-
-URL = (
-    "https://docs.google.com/spreadsheets/d/e/2PACX-1vQVw4odnZF34f267p9WqdQOhi"
-    "Y9tewD-jbnATgpi5W9smbkemvbOcVZSdeboXknoWxDhPyvtcxUYiQO/pub?gid=1947246172&single=true&output=tsv"
-)
-
-
-@click.command()
-def main() -> None:
-    """Add descriptions from a google curation sheet."""
-    df = pd.read_csv(URL, sep="\t")
-    del df[df.columns[0]]
-    df = df[df.description.notna()]
-    df = df[df["prefix"].map(_has_description)]
-    df = df[df["prefix"].map(_is_obofoundry)]
-    click.echo(df.to_markdown())
-    r = dict(bioregistry.read_registry())
-    for prefix, description in df[["prefix", "description"]].values:
-        r[prefix].description = description
-    bioregistry.write_registry(r)
-
-
-def _has_description(prefix: str) -> bool:
-    return bioregistry.get_description(prefix) is None
-
-
-def _is_obofoundry(prefix: str) -> bool:
-    return bioregistry.get_obofoundry_prefix(prefix) is None
-
-
-if __name__ == "__main__":
-    main()