bioregistry 0.13.15__py3-none-any.whl → 0.13.17__py3-none-any.whl

bioregistry/external/bioportal/bioportal.json

@@ -235,12 +235,13 @@
     },
     "description": "<p><strong>Allotrope Merged Ontology Suite</strong></p> <p>The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.</p> <p>license: http://purl.allotrope.org/voc/creative-commons-attribution-license<br/> rights: http://purl.allotrope.org/voc/copyright<br/></p>",
     "homepage": "http://purl.allotrope.org",
+    "license": "http://purl.allotrope.org/voc/copyright",
     "name": "Allotrope Merged Ontology Suite",
     "prefix": "AFO",
     "publications": [
       "http://www.allotrope.org"
     ],
-    "version": "REC/2025/06"
+    "version": "REC/2025/12"
   },
   "AFPO": {
     "contact": {
@@ -338,7 +339,7 @@
     "license": "CC-BY-4.0",
     "name": "AIdentifyAGE",
     "prefix": "AIDENTIFYAGE",
-    "version": "v1.0.1-beta"
+    "version": "v1.0.2-beta"
   },
   "AIO": {
     "contact": {
@@ -514,7 +515,7 @@
     "license": "CC-BY-4.0",
     "name": "Ascomycete Phenotype Ontology",
     "prefix": "APO",
-    "version": "2025-11-10"
+    "version": "2025-12-19"
   },
   "APOLLO-SV": {
     "contact": {
@@ -885,10 +886,10 @@
       "email": "jhc@lbl.gov",
       "name": "Harry Caufield"
     },
-    "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None",
+    "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None, \"An ontology of variables for earth system simulation, partially derived from the EcoSIM framework.\"",
     "name": "The Biological and Environmental Research Variable Ontology",
     "prefix": "BERVO",
-    "version": "2025-11-07"
+    "version": "2025-12-22"
   },
   "BFLC": {
     "contact": {
@@ -1016,7 +1017,7 @@
     "license": "CC0-1.0",
     "name": "Biolink Model",
     "prefix": "BIOLINK",
-    "version": "4.3.4"
+    "version": "4.3.6"
   },
   "BIOMO": {
     "contact": {
@@ -1694,7 +1695,7 @@
     "name": "Chemical Entities of Biological Interest Ontology",
     "prefix": "CHEBI",
     "repository": "https://github.com/ebi-chebi/ChEBI",
-    "version": "246.0"
+    "version": "248.0"
   },
   "CHEMBIO": {
     "contact": {
@@ -1870,7 +1871,7 @@
     "publications": [
       "https://www.ncbi.nlm.nih.gov/pubmed/27377652"
     ],
-    "version": "2025-11-25"
+    "version": "2025-12-17"
   },
   "CLAO": {
     "contact": {
@@ -1918,6 +1919,17 @@
     "prefix": "CMDO",
     "version": "1.1.4"
   },
+  "CMEO": {
+    "contact": {
+      "email": "komalsyeda29@gmail.com",
+      "name": "Komal Gilani"
+    },
+    "description": "CMEO (Clinical Metadata Exploration Ontology) is an ontology for representing and querying study- and variable-level metadata from clinical cohort studies in a consistent, machine-interpretable way. CMEO models the semantics of data elements (variables) and their key metadata needed for cross-cohort discovery and harmonization—such as human-readable labels/definitions, domain/type information (e.g., condition, measurement, medication), permissible categorical values, units, visit/timepoint context, derivation/provenance (e.g., computed variables), and basic descriptive statistics. It is designed to support metadata-driven tasks including cohort cataloguing, feasibility assessment, study retrieval, and identification of compatible variables across studies—without requiring access to patient-level data. It is intended to interoperate with controlled vocabularies and common clinical terminologies by linking data elements and value sets to external concept identifiers (e.g., OMOP concept IDs, SNOMED CT, LOINC, RxNorm/ATC, UCUM) while remaining model-agnostic (i.e., not tied to a single CDM). , and identification of compatible variables across studies—without requiring access to patient-level data.\n\nCMEO is intended to interoperate with controlled vocabularies and common clinical terminologies by linking data elements and value sets to external concept identifiers (e.g., not tied to a single CDM).",
+    "license": "CC-BY-4.0",
+    "name": "Clinical Metadata Exploration Ontology",
+    "prefix": "CMEO",
+    "version": "version 2"
+  },
   "CMO": {
     "contact": {
       "email": "akwitek@mcw.edu",
@@ -2004,7 +2016,7 @@
     "license": "CC0-1.0",
     "name": "Core Ontology for Biology and Biomedicine",
     "prefix": "COB",
-    "version": "2025-06-30"
+    "version": "2025-12-12"
   },
   "CODO": {
     "description": "The initial version, CODO ontology v1.0 to v1.3, encompasses pivotal features such as classes like patients, clinical findings, symptoms, and properties like relationships between patients, travel history, and test results. It facilitates tracking specific pandemic cases, detailing how patients may have been infected, and identifying potential contacts at risk due to their connection with the infected individual. CODO also enables monitoring of clinical tests, travel history, available resources, and actual needs like ICU beds and invasive ventilators. With capabilities for advanced analytics, contact tracing, trend studies, and growth projections based on daily COVID-19 data, CODO supports the organization and representation of COVID-19 data on a daily basis. It allows semantic querying and data retrieval and aids in behavior analysis of the disease and transmission routes. In contrast, Version 1.4, also known as CODO_COVIDRO 1.4 or COVID-19 Drug and Risk Ontology (COViDRO), presents a formal model specifically designed to tackle the multifaceted challenges associated with COVID-19 treatment, risk factors, and drug interactions. The knowledge embedded in the COViDRO model is extracted from diverse medical literature and treatment guidelines provided by reputable organizations such as the World Health Organization (WHO), the National Institutes of Health (NIH), the Food and Drug Administration (FDA), and the Centers for Disease Control and Prevention (CDC). The model incorporates information on therapeutics, adverse effects, and drug interactions from authoritative medical literature, making a significant contribution to patient care, research, and public health strategies. COViDRO, or COVID-19 Drug and Risk Ontology 1.4, seamlessly integrates into knowledge graph information systems or recommender systems. It assists healthcare professionals in suggesting appropriate treatments by considering a comprehensive set of factors, abbreviated as \"PRADiCT\" (Patient Risk factors, Adverse effects, Drug interaction, Clinical findings, and Treatment procedure). These factors encompass patient risk level, risk factors (such as underlying health conditions, age, immunocompromised state, and occupation), drug interactions, drug adverse effects, clinical findings (including diagnosis, signs, symptoms, and status), and treatment procedures. By offering a standardized framework for organizing and integrating data from diverse sources like clinical trials, medical literature, and real-world patient data, COViDRO enhances informed decision-making, thereby elevating the quality of patient care. It stands as a patient-centric solution, facilitating COVID-19 treatment options and personalized care based on individual patient characteristics. CODO V1.5 extends the previous CODO V1.4 with the focus on COVID-19 Virus Genomics for representation of genomic sequence data. VGO model comprises 261 classes, 55 object properties, and 14 data properties. Designed to streamline the use and dissemination of COVID-19 genomic sequence data, VGO serves as a robust resource for researchers and healthcare professionals. It incorporates data from the Global Initiative on Sharing All Influenza Data (GISAID), which facilitates efficient querying and visualization of genomic data, thereby improving both accessibility and usability. VGO includes a variety of classes that represent COVID-19-related data such as variants, mutations, amino acids, genes, proteins, genome sequencing, samples, hosts, sampling strategies, and assembly methods. Furthermore, VGO supports automated reasoning, enhancing its functionality for in-depth analysis and interpretation. By integrating GISAID data into the VGO knowledge graph, the model not only enriches its conceptual representation but also optimizes the querying and visualization processes, making genomic data more accessible and usable for the scientific and medical communities.",
@@ -2032,10 +2044,10 @@
       "email": "bianca.loehnert@plus.ac.at",
       "name": "Bianca Löhnert"
     },
-    "description": "CogiTO relates Tasks from Cognitive Atlas to Hierarchical Event Descriptor (HED) tags via logical relationships (as equivalent class axioms) between concepts. In other words, terms for cognitive tasks are defined by their relation to HED tags. The purpose of this ontology is to enable querying partially annotated datasets either by a Cognitive Task or by HED tags.",
+    "description": "CogiTO forms a semantic bridge between tasks from Cognitive Atlas and Hierarchical Event Descriptor (HED) in the form of equivalent class axioms. In other words, terms for cognitive tasks are defined by their relation to HED tags. The purpose of this ontology is to enable querying partially annotated datasets either by a Cognitive Task or by HED tags.",
     "name": "Cognitive Task Ontology",
     "prefix": "COGITO",
-    "version": "1.0.1"
+    "version": "1.1.0"
   },
   "COGPO": {
     "contact": {
@@ -2521,6 +2533,15 @@
     "prefix": "CVDO",
     "version": "2024-05-17"
   },
+  "CVO": {
+    "contact": {
+      "email": "abid.fareedi@gmail.com",
+      "name": "Abid Ali Fareedi"
+    },
+    "description": "CVDO is an ontology based on the OGMS model of disease, designed to describe entities related to cardiovascular diseases (including the diseases themselves, the underlying disorders, and the related pathological processes).",
+    "name": "CardiovascularDiseaseOntology",
+    "prefix": "CVO"
+  },
   "CWD": {
     "contact": {
       "email": "rfurberg@rti.org",
@@ -2951,7 +2972,7 @@
     "publications": [
       "https://disease-ontology.org/community/publications"
     ],
-    "version": "2025-11-25"
+    "version": "2025-12-23"
   },
   "DOREMUS-KEYS": {
     "contact": {
@@ -3037,7 +3058,7 @@
     "license": "CC-BY-3.0",
     "name": "The Drug Ontology",
     "prefix": "DRON",
-    "version": "2025-11-20"
+    "version": "2025-12-19"
   },
   "DRPSNPTO": {
     "contact": {
@@ -3348,20 +3369,30 @@
       "name": "Christiane Pinkert"
     },
     "description": "The EDEM-CONNECTONTO has been created to incorporate domain knowledge about the various types of agitation observed in people with dementia (PwD), as well as the dyadic relationship existing between PwD and their informal caregivers. Furthermore, it offers a structured framework for non-pharmacological interventions, enabling caregivers to effectively manage and mitigate the bidirectional effects of agitation in PwD.",
+    "license": "CC BY-NC-SA 4.0",
     "name": "eDEM-Connect: Ontology of Dementia-related Agitation and Relationship between Informal Caregivers and Persons with Dementia",
     "prefix": "EDEM-CONNECTONTO",
-    "version": "Version 1.0"
+    "version": "Version_2.0"
+  },
+  "EDONTOLOGY": {
+    "contact": {
+      "email": "abid.fareedi@gmail.com",
+      "name": "Abid Ali Fareedi"
+    },
+    "description": "This research work contributes in the field of Information logistics and ontology development in healthcare. An ontology based model that can fix information flow problems in the ward-round process of hospital unit. The ontology based model can be used to provide relevant information to the domain users according to their needs and demands. The ontology based model projects domain users profiling and describes their roles, information demands with competencies: skills, qualifications and experiences. The ontology based model will be implemented in OWL language that can be used in an application to support ward-round activities for achieving effective patient’s treatment process. For ontology development is concerned, different ontology development methodologies have been reviewed from literature review by the author to analyze the existing problems in the ward-round. This thesis incorporates Hybrid Methodology (HM) that helps to develop ontology based model that addresses information flow problems in ward-round. The proposed ontology based model is developed in web Ontology Language (OWL) supported tool protégé 4.0.2 that can be considered as foundation to develop a software product with the help of IT practitioners and developers to fulfill medical practitioner’s demands in ward-round’s context.",
+    "name": "EmergencyDerpartmentOntology",
+    "prefix": "EDONTOLOGY"
   },
   "EFO": {
     "contact": {
       "email": "efo-users@ebi.ac.uk",
       "name": "EFO User List"
     },
-    "description": "The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and Open Targets. The ontology has been developed to increase the richness of the annotations that are currently made in resources and to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology pulls together classes from reference ontologies such as disease, cell line, cell type and anatomy and adds axiomatisation as necessary to connect areas such as disease to phenotype. Contact EFO users list for information: efo-users@ebi.ac.uk.",
+    "description": "The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and Open Targets. The ontology has been developed to increase the richness of the annotations that are currently made in resources and to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology pulls together classes from reference ontologies such as disease, cell line, cell type and anatomy and adds axiomatisation as necessary to connect areas such as disease to phenotype. Contact EFO users list for information: efo-users@ebi.ac.uk., The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
     "homepage": "http://www.ebi.ac.uk/efo",
     "name": "Experimental Factor Ontology",
     "prefix": "EFO",
-    "version": "3.84.0"
+    "version": "3.85.0"
   },
   "EGO": {
     "contact": {
@@ -3765,14 +3796,15 @@
   },
   "EVI": {
     "contact": {
-      "email": "ma3xy@virginia.edu",
-      "name": "Sadnan Al Manir"
+      "email": "jniestroy@gmail.com",
+      "name": "Justin Niestroy"
     },
-    "description": "The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language.",
-    "homepage": "https://evidencegraph.github.io/EVI/",
+    "description": "The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language., The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language (OWL2).",
+    "homepage": "https://fairscape.github.io/EVI/",
+    "license": "CC BY-NC-SA 2.0",
     "name": "Evidence Graph Ontology",
     "prefix": "EVI",
-    "version": "1.1"
+    "version": "1.3"
   },
   "EVORAO": {
     "contact": {
@@ -3784,7 +3816,7 @@
     "license": "CC0-1.0",
     "name": "European Viral Outbreak Response Alliance Ontology",
     "prefix": "EVORAO",
-    "version": "1.0.10769"
+    "version": "1.0.10806"
   },
   "EVS": {
     "contact": {
@@ -4181,6 +4213,14 @@
     "prefix": "FIX",
     "version": "1.2"
   },
+  "FL8DSIP": {
+    "contact": {
+      "email": "lina.dadic.ld@gmail.com",
+      "name": "Lina"
+    },
+    "name": "Fieldlab 8 - Ontology",
+    "prefix": "FL8DSIP"
+  },
   "FLDLB3": {
     "contact": {
       "email": "rensanderson7@gmail.com",
@@ -4295,14 +4335,15 @@
       "email": "damion_dooley@sfu.ca",
       "name": "Damion Dooley"
     },
-    "description": "FoodOn is an ontology built to represent entities which bear a “food role” and is initially focused on categorizing and processing of food for humans. We aim to develop semantics for food safety, food security, the agricultural and animal husbandry practices linked to food production, culinary, nutritional and chemical ingredients and processes. FoodOn belongs to the OBOFoundry.org family of ontologies.",
+    "description": "FoodOn is an ontology built to represent entities which bear a “food role” and is initially focused on categorizing and processing of food for humans. We aim to develop semantics for food safety, food security, the agricultural and animal husbandry practices linked to food production, culinary, nutritional and chemical ingredients and processes. FoodOn belongs to the OBOFoundry.org family of ontologies., FoodOn is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world. See https://foodon.org for more details.",
     "homepage": "http://foodon.org",
+    "license": "CC-BY-4.0",
     "name": "The FoodOn Food Ontology",
     "prefix": "FOODON",
     "publications": [
       "https://www.nature.com/articles/s41538-018-0032-6"
     ],
-    "version": "2025-06-07"
+    "version": "2025-12-30"
   },
   "FOUR-M_VOCABS": {
     "contact": {
@@ -5047,6 +5088,15 @@
     "name": "HierarchicalDMProcessOnto",
     "prefix": "HDMPONTO"
   },
+  "HDS": {
+    "contact": {
+      "email": "jstocker@eepa.be",
+      "name": "Joëlle Stocker"
+    },
+    "description": "The humanitarian data space vocabulary describes entities and relationships relevant for humanitarian applications, specifically focusing on events related to sexual violence, human trafficking and refugee protection. The aim of this vocabulary is to report on situations and incidents that are taking place on the ground into the humanitarian data space.",
+    "name": "Humanitarian Data Space",
+    "prefix": "HDS"
+  },
   "HECON": {
     "contact": {
       "email": "alba.morales-tirado@open.ac.uk",
@@ -5399,7 +5449,17 @@
     "license": "CC-BY-4.0",
     "name": "HPO - ORDO Ontological Module",
     "prefix": "HOOM",
-    "version": "2.4"
+    "version": "2.5"
+  },
+  "HOOM_V3": {
+    "contact": {
+      "email": "marc.hanauer@inserm.fr",
+      "name": "marc hanauer"
+    },
+    "description": "Orphanet provides phenotypic annotations of the rare diseases in the Orphanet nomenclature using the Human Phenotype Ontology (HPO). HOOM is a module that qualifies the annotation between a clinical entity and phenotypic abnormalities according to a frequency and by integrating the notion of diagnostic criterion. This new model of HOOM, used between ORDO and HPO is no more based on OBAN modelisation. It provides ORDO diseases concept annotated with HPO terms in a lightweight new dataset.",
+    "name": "HOOM_New_Model",
+    "prefix": "HOOM_V3",
+    "version": "3.0"
   },
   "HORD": {
     "contact": {
@@ -5477,8 +5537,7 @@
     },
     "description": "A collection of curated and standardized values used by the HuBMAP (Human BioMolecular Atlas Program) and SenNet (Cellular Senescence Network) metadata records to ensure uniformity in the description of samples and single-cell data produced by the consortium.",
     "name": "HuBMAP Research Attributes Value Set",
-    "prefix": "HRAVS",
-    "version": "2.13.10"
+    "prefix": "HRAVS"
   },
   "HRDO": {
     "contact": {
@@ -6696,6 +6755,21 @@
     "name": "Loggerhead Nesting Ontology",
     "prefix": "LHN"
   },
+  "LHO": {
+    "contact": {
+      "email": "sabanoor8867@gmail.com",
+      "name": "Saba Noor"
+    },
+    "description": "The Livestock Health Ontology (LHO) extends the DECIDE ontology specifically designed for salmon usecase. LHO contains information on the health and well-being of livestock animal species such as cattle, pigs, and poultry. Furthermore, it represents the explicit structured and standardized framework for specific domain knowledge and data integration of livestock species. During the development process, knowledge can be retrieved from domain experts, and after the retrieving process, the prototype is designed for reasoning and planning of data related to cattle, pigs, and poultry. Moreover, LHO contains information regarding farms Identifications, their samples, geolocation, breed, diagnostic tests, Pathogen identifications, and Pathogen results for specific bacteria such as Histophilus Somni (HS), Mannheimia Haemolytica (MH), Pasteurella Multocida (PM), Bovine Coronavirus (BCV) bacterial mycoplasma and aerobic culture results for the respiratory diseases in cattle. This information is represented as concepts of classes, subclasses, and their relationship in the form of object and data properties. For pigs, it includes FarmType, age, weight, and pathogens like PRRS, SwineInfluenza, and M_Hyponemoniea. In poultry, LHO incorporates FarmType, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across livestock species. ), Salmon case study demonstrates the semantic modeling and integration of aquaculture-specific attributes such as hasMortality, hasActualBiomass, hasWaterType, and hasLocalAuthority. The data supports epidemiological analysis of fish health by mapping samples and measurements to environmental and production factors.",
+    "homepage": "https://bioportal.bioontology.org/ontologies/LHO",
+    "license": "https://opensource.org/licenses/MIT",
+    "name": "LivestockHealthOntology",
+    "prefix": "LHO",
+    "publications": [
+      "https://zenodo.org/records/14049611"
+    ],
+    "version": "V1.4"
+  },
   "LIB": {
     "name": "MWS-WSM",
     "prefix": "LIB"
@@ -7143,7 +7217,7 @@
     },
     "description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers., An ontology representing the model card structure",
     "homepage": "https://github.com/UTHealth-Ontology/MCRO",
-    "license": "CC-BY-3.0",
+    "license": "CC-BY-4.0",
     "name": "Model Card Report Ontology",
     "prefix": "MCRO",
     "version": "2023-03-07"
@@ -7361,7 +7435,7 @@
     "license": "CC-BY-4.0",
     "name": "METPO",
     "prefix": "METPO",
-    "version": "2025-11-25"
+    "version": "2025-12-12"
   },
   "MF": {
     "contact": {
@@ -7740,7 +7814,7 @@
     "publications": [
       "https://mondo.monarchinitiative.org/pages/resources/"
     ],
-    "version": "2025-11-04"
+    "version": "2026-01-06"
   },
   "MONO": {
     "contact": {
@@ -7811,7 +7885,7 @@
     "homepage": "http://www.informatics.jax.org/searches/MP_form.shtml",
     "name": "Mammalian Phenotype Ontology",
     "prefix": "MP",
-    "version": "2025-11-19"
+    "version": "2025-12-18"
   },
   "MPATH": {
     "contact": {
@@ -8050,6 +8124,7 @@
     },
     "description": "Vocabulary for clinical care, translational and basic research, and public information and administrative activities.",
     "homepage": "https://ncithesaurus.nci.nih.gov/ncitbrowser/",
+    "license": "CC-BY-4.0",
     "name": "National Cancer Institute Thesaurus",
     "prefix": "NCIT",
     "version": "24.01e"
@@ -8096,6 +8171,16 @@
     "prefix": "NDDO",
     "version": "0.2"
   },
+  "NDDRFO": {
+    "contact": {
+      "email": "bairong.shen@scu.edu.cn",
+      "name": "Bairong Shen"
+    },
+    "description": "Neurodegenerative Diseases Risk Factor Ontology (NDDRFO) is a disease-specific ontology that characterizes the knowledge field of risk factors for neurodegenerative diseases.",
+    "name": "Neurodegenerative Disease Risk Factor Ontology",
+    "prefix": "NDDRFO",
+    "version": "V1.0.0"
+  },
   "NDFRT": {
     "contact": {
       "email": "michael.lincoln@va.gov",
@@ -8656,7 +8741,7 @@
     "publications": [
       "http://purl.obolibrary.org/obo/obi/Technical_Reports"
     ],
-    "version": "2025-10-14"
+    "version": "2025-12-18"
   },
   "OBIB": {
     "contact": {
@@ -9101,9 +9186,10 @@
     },
     "description": "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.",
     "homepage": "https://github.com/ohmi-ontology/ohmi",
+    "license": "CC-BY-4.0",
     "name": "Ontology of Host-Microbe Interactions",
     "prefix": "OHMI",
-    "version": "2019-09-17"
+    "version": "2025-12-28"
   },
   "OHPI": {
     "contact": {
@@ -9135,10 +9221,11 @@
       "email": "jiezhen@umich.edu",
       "name": "Jie Zheng"
     },
-    "description": "The Ontology of Laboratory Animal Science (OLAS) is established as a community-based biomedical ontology in the field of laboratory animal science, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal science.",
+    "description": "The Ontology of Laboratory Animal Science (OLAS) is established as a community-based biomedical ontology in the field of laboratory animal science, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal science., OLAS is a biomedical ontology in the area of laboratory animal science.",
+    "license": "CC-BY-4.0",
     "name": "Ontology of Laboratory Animal Science",
     "prefix": "OLAS",
-    "version": "2025-05-08"
+    "version": "2025-12-22"
   },
   "OLATDV": {
     "contact": {
@@ -9777,7 +9864,7 @@
     "license": "CC-BY-4.0",
     "name": "Orphanet Rare Disease Ontology",
     "prefix": "ORDO",
-    "version": "4.7"
+    "version": "4.8"
   },
   "OREX-SAM": {
     "contact": {
@@ -10216,7 +10303,7 @@
     "publications": [
       "http://planteome.org/pub"
     ],
-    "version": "releases/2023-11-10"
+    "version": "v2025-10-30"
   },
   "PEDTERM": {
     "contact": {
@@ -10278,14 +10365,15 @@
       "email": "abdullahibnkawu@gmail.com",
       "name": "Abdullahi Abubakar Kawu"
     },
-    "description": "This ontology seeks to capture the provenance and data quality associated with PGHD shared with an EHR. The objective is to have an ontological formal representation of the provenance and contextual data related to PGHD shared with EHR, in order to offer clinicians a means to use PGHD data for decision making and treatment support.",
+    "description": "This ontology seeks to capture the provenance and data quality associated with PGHD shared with an EHR. The objective is to have an ontological formal representation of the provenance and contextual data related to PGHD shared with EHR, in order to offer clinicians a means to use PGHD data for decision making and treatment support., Patient Generated Health Data (PGHD) refer to health data collected by patient or their relatives. This ontology seeks to capture information about the data, the provenance and data quality associated with PGHD shared with an EHR.",
     "homepage": "https://w3id.org/pghdprovo",
-    "name": "Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record",
+    "license": "CC-BY-4.0",
+    "name": "PGHDProvo: Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record",
     "prefix": "PGHDPROV",
     "publications": [
-      "https://abdullahikawu.github.io/PGHD"
+      "https://doi.org/10.1007/978-3-031-95841-0_37"
     ],
-    "version": "1.0.0"
+    "version": "1.0"
   },
   "PGHD_CONNECT": {
     "contact": {
@@ -10349,7 +10437,7 @@
     "license": "CC0-1.0",
     "name": "Promoting Health Aging through Semantic Enrichment of Solitude Research",
     "prefix": "PHASES",
-    "version": "2025-05-16"
+    "version": "2025-12-23"
   },
   "PHENOMEBLAST": {
     "name": "PhenomeBLAST Ontology",
@@ -10479,11 +10567,12 @@
       "email": "cooperl@science.oregonstate.edu",
       "name": "Laurel Cooper"
     },
-    "description": "This ontology describes biotic and abiotic stresses that a plant may encounter.",
+    "description": "This ontology describes biotic and abiotic stresses that a plant may encounter., An ontology describing biotic and abiotic plant stresses.",
     "homepage": "https://github.com/Planteome/plant-stress-ontology",
+    "license": "CC-BY-4.0",
     "name": "Plant Stress Ontology",
     "prefix": "PLANTSO",
-    "version": "2023-11-14"
+    "version": "2025-12-16"
   },
   "PLIO": {
     "contact": {
@@ -10691,6 +10780,17 @@
     ],
     "version": "71.0"
   },
+  "PREFER": {
+    "contact": {
+      "email": "shawntanzk@outlook.com",
+      "name": "Shawn Zheng Kai Tan"
+    },
+    "description": "PREFER is an ontology designed to integrate high-throughput bioprocess data, covering operational, environmental and process parameters across different scales of a precision fermentation process, to accelerate the development and scaling of biosustainable production processes., An ontology for PREcision FERmentation.",
+    "license": "CC-BY-4.0",
+    "name": "Precision Fermentation Ontology",
+    "prefix": "PREFER",
+    "version": "2025-12-22"
+  },
   "PREGONTO": {
     "contact": {
       "email": "h.s.liyanage@surrey.ac.uk",
@@ -10942,7 +11042,7 @@
     "homepage": "https://www.rsna.org/practice-tools/data-tools-and-standards/radlex-radiology-lexicon",
     "name": "Radiology Lexicon",
     "prefix": "RADLEX",
-    "version": "4.2"
+    "version": "4.3"
   },
   "RADMO": {
     "name": "RADx Metadata Ontology",
@@ -10996,7 +11096,7 @@
     "publications": [
       "https://doi.org/10.1080/09553002.2023.2173823"
     ],
-    "version": "2025-11-26"
+    "version": "2025-12-11"
   },
   "RCD": {
     "contact": {
@@ -11246,11 +11346,11 @@
   },
   "ROADMAP": {
     "contact": {
-      "email": "ckahn@upenn.edu",
-      "name": "Charles Kahn"
+      "email": "informatics@rsna.org",
+      "name": "Radiological Society of North America (RSNA)"
     },
     "description": "ROADMAP provides a controlled terminology for the metadata that describe AI models and datasets. It builds on \"model cards\" and \"datasheets for datasets\" with imaging-specific descriptors. It includes a comprehensive set of metrics to assess the performance of AI models that work with images, text, and/or discrete data.",
-    "name": "Radiology Ontology of AI Models, Datasets and Projects",
+    "name": "Radiology Ontology of AI Datasets, Models and Projects",
     "prefix": "ROADMAP",
     "repository": "https://github.com/RSNA/ROADMAP",
     "version": "2025-11"
@@ -11511,7 +11611,7 @@
       "email": "ga.ubbiali@gmail.com",
       "name": "Giorgio A. Ubbiali"
     },
-    "description": "SCO is a middle-level ontology, representing the major theoretical challenges to sustainability: 1) The polysemy of the term sustainability. 2) The relationship between sustainability and sustainable development. 3) The complexity underlying sustainability. SCO aims to play a pivotal role in harmonizing and integrating top-level and domain ontologies regarding sustainability., SCO V1.1.0 aligns with two Top-Level Ontologies (TLOs), Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO). SCO V1.1.0 is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO (as SCO V1.0.0). SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). This file provides SCO-U segment. References – TLOs: https://github.com/BFO-ontology/BFO-2020 https://ontouml.readthedocs.io/en/latest/intro/ufo.html https://nemo-ufes.github.io/gufo/, representing the major theoretical challenges to sustainability:\n1) The polysemy of the term sustainability.\n2) The relationship between sustainability and sustainable development.\n3) The complexity underlying sustainability.\nSCO aims to play a pivotal role in harmonizing and integrating top-level and domain ontologies regarding sustainability., Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO). SCO V1.1.0 is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO (as SCO V1.0.0). SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). This file provides SCO-U segment.\n\nReferences – TLOs: \nhttps://github.com/BFO-ontology/BFO-2020 \nhttps://ontouml.readthedocs.io/en/latest/intro/ufo.html \nhttps://nemo-ufes.github.io/gufo/",
+    "description": "SCO is a middle-level ontology, representing the major theoretical challenges to sustainability: 1) The polysemy of the term sustainability. 2) The relationship between sustainability and sustainable development. 3) The complexity underlying sustainability. SCO aims to play a pivotal role in harmonizing and integrating top-level and domain ontologies regarding sustainability., SCO V1.1.0 aligns with two Top-Level Ontologies (TLOs), Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO). SCO V1.1.0 is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO (as SCO V1.0.0). SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). This file provides SCO-U segment. References – TLOs: https://github.com/BFO-ontology/BFO-2020 https://ontouml.readthedocs.io/en/latest/intro/ufo.html https://nemo-ufes.github.io/gufo/",
     "homepage": "https://www.w3id.org/sco/repo",
     "license": "CC-BY-4.0",
     "name": "Sustainability Core Ontology - Segment U",
@@ -11528,7 +11628,7 @@
       "email": "ga.ubbiali@gmail.com",
       "name": "Giorgio A. Ubbiali"
     },
-    "description": "The Sustainability Core Ontology (SCO) is a middle-level ontology, covering the terminology related to the three major theoretical challenges of sustainability: 1) The polysemy of the term sustainability. 2) The relationship between sustainability and sustainable development. 3) The complexity underlying sustainability. SCO is designed to be the pivotal resource upon which to harmonize and integrate ontologies regarding sustainability. The ultimate goal is to establish a family of interoperable sustainability ontologies. Currently, SCO employs Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO) as the upper-level ontologies. SCO V1.1.0 is the current release and is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO. SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). SCO V1.1.0. covers three natural languages, English, French, and Italian. SCO V1.1.0. conforms to OBO-Foundry principles. The most recent version of SCO-B segment can always be found at https://w3id.org/sco. The most recent version of SCO-U segment can always be found at https://w3id.org/sco/sco-u., SCO is a middle-level ontology, representing the major theoretical challenges to sustainability:\n1) The polysemy of the term sustainability.\n2) The relationship between sustainability and sustainable development.\n3) The complexity underlying sustainability.\nSCO aims to play a pivotal role in harmonizing and integrating top-level and domain ontologies regarding sustainability., SCO V1.1.0 aligns with two Top-Level Ontologies (TLOs), Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO). SCO V1.1.0 is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO (as SCO V1.0.0). SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). This file provides SCO-B segment.\n\nReferences – TLOs: \nhttps://github.com/BFO-ontology/BFO-2020 \nhttps://ontouml.readthedocs.io/en/latest/intro/ufo.html \nhttps://nemo-ufes.github.io/gufo/",
+    "description": "The Sustainability Core Ontology (SCO) is a middle-level ontology, covering the terminology related to the three major theoretical challenges of sustainability: 1) The polysemy of the term sustainability. 2) The relationship between sustainability and sustainable development. 3) The complexity underlying sustainability. SCO is designed to be the pivotal resource upon which to harmonize and integrate ontologies regarding sustainability. The ultimate goal is to establish a family of interoperable sustainability ontologies. Currently, SCO employs Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO) as the upper-level ontologies. SCO V1.1.0 is the current release and is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO. SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). SCO V1.1.0. conforms to OBO-Foundry principles. The most recent version of SCO-B segment can always be found at https://w3id.org/sco. The most recent version of SCO-U segment can always be found at https://w3id.org/sco/sco-u. This file provides SCO-B segment. References – TLOs: https://github.com/BFO-ontology/BFO-2020 https://ontouml.readthedocs.io/en/latest/intro/ufo.html https://nemo-ufes.github.io/gufo/",
     "homepage": "https://www.w3id.org/sco/repo",
     "license": "CC-BY-4.0",
     "name": "Sustainability Core Ontology",
@@ -11755,7 +11855,7 @@
     "license": "CC-BY-3.0",
     "name": "Space Life Sciences Ontology",
     "prefix": "SLSO",
-    "version": "2025-09-16"
+    "version": "2025-12-11"
   },
   "SL_DIS": {
     "contact": {
@@ -12819,7 +12919,7 @@
     "license": "CC-BY-4.0",
     "name": "vfb_drivers",
     "prefix": "VFB_DRIVERS",
-    "version": "2025-11-24"
+    "version": "2026-01-05"
   },
   "VHOG": {
     "contact": {
@@ -12915,7 +13015,7 @@
     "license": "CC-BY-4.0",
     "name": "Vaccine Ontology",
     "prefix": "VO",
-    "version": "2025-11-01"
+    "version": "2025-12-03"
   },
   "VODANA-GENERAL": {
     "contact": {
@@ -13087,8 +13187,7 @@
     "prefix": "VT",
     "publications": [
       "https://www.animalgenome.org/bioinfo/projects/vt/"
-    ],
-    "version": "2025-11-25"
+    ]
   },
   "VTO": {
     "contact": {