bioregistry 0.13.15__py3-none-any.whl → 0.13.17__py3-none-any.whl

bioregistry/external/fairsharing/processed.json

@@ -549,11 +549,11 @@
       "name": "Goksel Misirli",
       "orcid": "0000-0002-2454-7188"
     },
-    "description": "Ontology for mapping ontological terms to SBOL Visual glyphs.",
+    "description": "The SBOL Visual Ontology (SBOL-VO) provides a set of controlled terms to describe visual glyphs for genetic circuit designs. The terms are organised based on their descriptions in community-edited Markdown files. Terms are defined for recommended and alternative glyphs in addition to terms to represent generic glyphs. SBOL-VO consists of the following items.",
     "domains": [
       "Knowledge representation"
     ],
-    "homepage": "https://vows.sbolstandard.org",
+    "homepage": "https://sbolstandard.org/sbol-visual-ontology/",
     "license": "CC0-1.0",
     "name": "Synthetic Biology Open Language Visual 2 Ontology",
     "publications": [
@@ -561,6 +561,11 @@
         "doi": "10.1021/acssynbio.0c00046",
         "title": "SBOL Visual 2 Ontology",
         "year": 2020
+      },
+      {
+        "doi": "10.1021/acssynbio.9b00139",
+        "title": "Communicating Structure and Function in Synthetic Biology Diagrams",
+        "year": 2019
       }
     ],
     "repository": "https://github.com/dissys/sbol-visual-ontology",
@@ -1864,6 +1869,13 @@
     ],
     "homepage": "http://bioportal.bioontology.org/ontologies/ONTOPSYCHIA",
     "name": "OntoPsychia, social module",
+    "publications": [
+      {
+        "pubmed": "29295236",
+        "title": "From Patient Discharge Summaries to an Ontology for Psychiatry",
+        "year": 2017
+      }
+    ],
     "subjects": [
       "Systems Medicine",
       "Medical Informatics",
@@ -3405,19 +3417,6 @@
       "Natural Science"
     ]
   },
-  "FAIRsharing.5c7cec": {
-    "abbreviation": "CESSDA Vocabulary",
-    "description": "CESSDA Vocabulary Service enables users to discover, browse, and download controlled vocabularies in a variety of languages. The service is provided by the Consortium of European Social Science Data Archives (CESSDA). The majority of the source (English) vocabularies included in the service have been created by the DDI Alliance. The Data Documentation Initiative (DDI) is an international standard for describing data produced by surveys and other observational methods in the social, behavioural, economic, and health sciences.",
-    "homepage": "https://vocabularies.cessda.eu/#!discover",
-    "name": "CESSDA Vocabulary",
-    "subjects": [
-      "Economics",
-      "Public Health",
-      "Social Science",
-      "Social and Behavioural Science"
-    ],
-    "twitter": "CESSDA_Data"
-  },
   "FAIRsharing.5cmtw3": {
     "abbreviation": "MIRNAO",
     "description": "This resource is no longer available because its underlying source material is not in scope for FAIRsharing.",
@@ -3984,7 +3983,7 @@
       "name": "Federica Viti",
       "orcid": "0000-0002-9651-8896"
     },
-    "description": "Ontology for the field of Tissue Engineering, especially bone and cartilage tissues.",
+    "description": "Ontology for the field of Tissue Engineering, especially bone and cartilage tissues. Note that although the BioPortal record and publication remain available, they have not been updated since 2014 and therefore this ontology should be used with care. Please get in touch with us if you have any information.",
     "domains": [
       "bone element"
     ],
@@ -4986,11 +4985,12 @@
   },
   "FAIRsharing.7p0xdg": {
     "abbreviation": "DSEO",
-    "description": "Simple SKOS Taxonomy denoting subfields of study in data science for use in educational applications.",
-    "homepage": "http://bigdatau.org/about_erudite",
+    "description": "The Data Science Education Ontology (DSEO) is a collection of concepts that aims to capture learning needs in data science. It was designed with a data science practicioner’s workflow in mind. The platform collects and organizes online data science training resources and materials and provides an interface for learners to search, explore, recommend, and collect resources they find valuable. Overall, the platform aims to teach data science while leveraging techniques from data science. Specifically, the DSEO is part of the Educational Resource Discovery Index, ERuDIte, and it serves to provide additional descriptors to learning resource metadata.",
+    "homepage": "https://www.pagestudy.org/DSEO/",
+    "license": "CC BY-SA 3.0",
     "name": "Data Science Education Ontology",
+    "repository": "https://github.com/bioint/DSEO",
     "subjects": [
-      "Knowledge and Information Systems",
       "Education Science"
     ]
   },
@@ -5275,7 +5275,7 @@
       "Hospital",
       "morbidity"
     ],
-    "homepage": "https://www.cms.gov/Medicare/Coding/ICD10/2020-ICD-10-PCS",
+    "homepage": "https://www.cms.gov/medicare/coding-billing/icd-10-codes",
     "name": "International Classification of Diseases Version 10 - Procedure Coding System",
     "subjects": [
       "Biomedical Science",
@@ -5398,7 +5398,7 @@
     "domains": [
       "neuron"
     ],
-    "homepage": "https://github.com/SciKnowEngine/SciDIG",
+    "homepage": "https://github.com/SciKnowEngine/SciKnowGraph",
     "name": "Neuroscience Domain Insight Graphs",
     "repository": "http://usc-isi-i2.github.io/dig/",
     "subjects": [
@@ -6418,7 +6418,7 @@
   },
   "FAIRsharing.9xcr4z": {
     "abbreviation": "CIDOC-CRM",
-    "description": "The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation. The overall scope of the CIDOC CRM can be summarised in simple terms as the curated, factual knowledge\nabout the past at a human scale. The CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the \"semantic glue\" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives. The ISO 21127:2014 specification (Information and documentation — A reference ontology for the interchange of cultural heritage information) was created from the CIDOC CRM, although the CIDOC CRM Special Interest Group continues to maintain this original document as well.",
+    "description": "The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation. The overall scope of the CIDOC CRM can be summarised in simple terms as the curated, factual knowledge\nabout the past at a human scale. The CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the \"semantic glue\" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives. The ISO 21127:2023 (Information and documentation — A reference ontology for the interchange of cultural heritage information) was created from the CIDOC CRM, although the CIDOC CRM Special Interest Group continues to maintain this original document as well.",
     "homepage": "https://www.cidoc-crm.org/",
     "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBZUk9IiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--057a21005e538cb21742ec8a475bf44a6228c707/cidoc.png?disposition=inline",
     "name": "CIDOC Conceptual Reference Model",
@@ -6900,14 +6900,10 @@
   "FAIRsharing.RlEMBA": {
     "abbreviation": "P-PLAN",
     "description": "The Ontology for Provenance and Plans (P-Plan) is an extension of the PROV-O ontology [PROV-O] created to represent the plans that guided the execution of scientific processes. P-Plan describes how the plans are composed and their correspondence to provenance records that describe the execution itself.",
-    "domains": [
-      "Resource metadata"
-    ],
     "homepage": "http://purl.org/net/p-plan",
-    "license": "CC BY-NC-SA 2.0",
+    "license": "CC-BY-4.0",
     "name": "Ontology for Provenance and Plans",
     "subjects": [
-      "Data Management",
       "Computer Science"
     ]
   },
@@ -7776,14 +7772,13 @@
       "name": "Gary Schindelman",
       "orcid": "0000-0001-7883-4388"
     },
-    "description": "An ontology for phenotypes pertaining to the nematode Caenorhabditis elegans (C. elegans) and related nematodes used by the nematode genome database WormBase.",
+    "description": "An ontology for phenotypes pertaining to the nematode Caenorhabditis elegans (C. elegans) and related nematodes used by the nematode genome database WormBase. The C. elegans Phenotype Ontology organizes terms representing observed and reported phenotypes of C. elegans and related nematodes into a hierarchy for the purpose of phenotype term discovery (e.g. using ontology browsers) and logical reasoning (e.g. inferring genes whose perturbation results in a more general phenotype based on annotations to more specific phenotypes). There is an ongoing effort to generate logical definitions that will formalize the relationship between each phenotype term and the biological entities (cells, tissues, cellular components, biological processes, etc.) that are affected.",
     "domains": [
-      "Data analysis",
       "phenotype"
     ],
     "homepage": "https://github.com/obophenotype/c-elegans-phenotype-ontology",
     "license": "CC-BY-4.0",
-    "name": "C. elegans phenotype",
+    "name": "C. elegans phenotype ontology",
     "publications": [
       {
         "doi": "10.1186/1471-2105-12-32",
@@ -8748,6 +8743,7 @@
       "phenotype"
     ],
     "homepage": "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
+    "license": "CC0-1.0",
     "name": "Measurement Method Ontology",
     "publications": [
       {
@@ -8763,6 +8759,7 @@
         "year": 2013
       }
     ],
+    "repository": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology",
     "subjects": [
       "Life Science",
       "Preclinical Studies",
@@ -8808,12 +8805,19 @@
   },
   "FAIRsharing.bkejsq": {
     "abbreviation": "HUPSON",
-    "description": "Large biomedical simulation initiatives, such as the Virtual Physiological Human (VPH), are substantially dependent on controlled vocabularies to facilitate the exchange of information, of data and of models. Hindering these initiatives is a lack of a comprehensive ontology that covers the essential concepts of the simulation domain. We propose a first version of a newly constructed ontology, HuPSON, as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles.",
+    "description": "Large biomedical simulation initiatives, such as the Virtual Physiological Human (VPH), are substantially dependent on controlled vocabularies to facilitate the exchange of information, of data and of models. Hindering these initiatives is a lack of a comprehensive ontology that covers the essential concepts of the simulation domain. HuPSON was created as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles.",
     "domains": [
       "algorithm"
     ],
     "homepage": "http://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads.html",
     "name": "Human Physiology Simulation Ontology",
+    "publications": [
+      {
+        "doi": "10.1186/2041-1480-4-35",
+        "title": "HuPSON: the human physiology simulation ontology",
+        "year": 2013
+      }
+    ],
     "subjects": [
       "Systems Biology",
       "Medical Informatics"
@@ -8871,6 +8875,11 @@
   },
   "FAIRsharing.bxc508": {
     "abbreviation": "OBIB",
+    "contact": {
+      "email": "jmwhorton@uams.edu",
+      "name": "Justin Whorton",
+      "orcid": "0009-0003-4268-6207"
+    },
     "description": "The ontology for Biobanking (OBIB) is an ontology built for annotation and modeling of biobank repository and biobanking administration. It is developed based on subset of Ontology for Biomedical Investigations (OBI) using Basic Formal Ontology (BFO) as top ontology and following OBO Foundry principles. The first version of the ontology is merged of two existing biobank related ontologies, OMIABIS and biobank ontology.",
     "domains": [
       "Biobank"
@@ -10001,7 +10010,7 @@
         "year": 2019
       }
     ],
-    "repository": "https://github.com/arpcard/aro/blob/master/README.md",
+    "repository": "https://github.com/arpcard/aro",
     "subjects": [
       "Genetics"
     ],
@@ -11877,6 +11886,7 @@
       "Taxonomic classification"
     ],
     "homepage": "https://github.com/obophenotype/ncbitaxon",
+    "license": "CC0-1.0",
     "name": "NCBI Organismal Classification",
     "publications": [
       {
@@ -12574,13 +12584,13 @@
   },
   "FAIRsharing.hqyeb7": {
     "abbreviation": "FIRE",
-    "description": "The ontology of Fire was created in order to represent the set of concepts about the fire occurring in natural vegetation, its characteristics, causes and effects, with focus on Cerrado vegetation domain. The fire plays a determinant role on the structure and composition of Cerrado physiognomies.",
+    "description": "The ontology of Fire was created in order to represent the set of concepts about the fire occurring in natural vegetation, its characteristics, causes and effects, with focus on Cerrado vegetation domain. The fire plays a determinant role on the structure and composition of Cerrado physiognomies. Please note that the documentation appears incomplete in places and the ontology has not been updated since its first release in 2014. ",
     "domains": [
       "combustion process",
       "climate",
       "ecosystem"
     ],
-    "homepage": "http://bioportal.bioontology.org/ontologies/FIRE",
+    "homepage": "http://cerrado.linkeddata.es/ecology/fire#",
     "name": "Fire Ontology",
     "subjects": [
       "Environmental Science",
@@ -12741,6 +12751,7 @@
       "cardiovascular disease"
     ],
     "homepage": "https://bioportal.lirmm.fr/ontologies/TOP-MENELAS",
+    "license": "https://creativecommons.org/licenses/by-nc-nd/2.0/uk",
     "name": "Menelas Project Top-Level Ontology",
     "subjects": [
       "Vascular Surgery",
@@ -13255,7 +13266,7 @@
     "domains": [
       "disease"
     ],
-    "homepage": "http://bioportal.bioontology.org/ontologies/DERMO",
+    "homepage": "https://github.com/dermatology-ontology/dermatology",
     "name": "Human Dermatological Disease Ontology",
     "publications": [
       {
@@ -14832,12 +14843,11 @@
   },
   "FAIRsharing.p1nva": {
     "abbreviation": "AURA",
-    "description": "KB-Bio-101 contains knowledge about processes and mechanisms, and was created from an introductory textbook in biology.",
+    "description": "Record does not exist anymore: KB_Bio_101. The record with identifier content 10.25504/FAIRsharing.p1nva was invalid as it did not describe a community ontology and therefore was never in scope for FAIRsharing. Records previously linked: [409, 6225]. Organisations previously linked: [2623]. Licences previously linked: [171].",
     "domains": [
       "chromosome"
     ],
     "homepage": "https://bioportal.bioontology.org/ontologies/AURA",
-    "license": "CC BY-NC 3.0",
     "name": "KB_Bio_101",
     "subjects": [
       "Biology"
@@ -15841,7 +15851,6 @@
     ]
   },
   "FAIRsharing.rbpqg": {
-    "abbreviation": "PGXO",
     "description": "PGxO is a lightweight and simple Pharmacogenomic Ontology to reconcile and trace knowledge in pharmacogenomics (PGx).",
     "domains": [
       "Electronic Health Record"
@@ -16230,7 +16239,7 @@
   },
   "FAIRsharing.s3r6sk": {
     "abbreviation": "ZFA",
-    "description": "A structured controlled vocabulary of the anatomy and development of the Zebrafish. If you work on the project responsible for \"Zebrafish anatomy and development\" then please consider helping us by claiming this record and updating it appropriately.",
+    "description": "A structured controlled vocabulary of the anatomy and development of the Zebrafish. The anatomical ontology is a list of structures, organized hierarchically into an ontology, with descriptions of each structure. The current version of the zebrafish anatomical ontology is being written by a consortium of researchers, each serving as an expert for a particular set of anatomical structures. Additional anatomical information derived from the current literature is provided by the ZFIN curation group. Development of a complete and uniform anatomical ontology for the zebrafish is vital to the success of zebrafish science.",
     "domains": [
       "morphology",
       "structure",
@@ -16238,6 +16247,7 @@
       "life cycle stage"
     ],
     "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
+    "license": "CC-BY-3.0",
     "name": "Zebrafish anatomy and development",
     "publications": [
       {
@@ -17119,6 +17129,7 @@
       "strain"
     ],
     "homepage": "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=RS:0000457",
+    "license": "CC-BY-4.0",
     "name": "Rat Strain Ontology",
     "publications": [
       {
@@ -17306,7 +17317,8 @@
     "domains": [
       "ncRNA"
     ],
-    "homepage": "http://bioportal.bioontology.org/ontologies/NCRO",
+    "homepage": "https://github.com/OmniSearch/ncro",
+    "license": "CC-BY-4.0",
     "name": "Non-coding RNA Ontology",
     "publications": [
       {
@@ -17628,7 +17640,7 @@
       "structure",
       "life cycle"
     ],
-    "homepage": "http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab",
+    "homepage": "https://github.com/Planteome/plant-trait-ontology",
     "license": "CC-BY-4.0",
     "name": "Plant Trait Ontology",
     "publications": [
@@ -17637,6 +17649,11 @@
         "pubmed": "29186578",
         "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics",
         "year": 2017
+      },
+      {
+        "doi": "10.1093/nar/gkad1028",
+        "title": "Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology",
+        "year": 2024
       }
     ],
     "repository": "https://github.com/Planteome/plant-trait-ontology",
@@ -18718,8 +18735,6 @@
     "abbreviation": "CPTAC",
     "description": "A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project",
     "domains": [
-      "Data acquisition",
-      "data transformation",
       "protein"
     ],
     "homepage": "http://bioportal.bioontology.org/ontologies/1192",

bioregistry/external/integbio/__init__.py

@@ -131,18 +131,18 @@ def get_integbio(*, force_download: bool = False) -> dict[str, dict[str, Any]]:
         inplace=True,
     )
     for key in SKIP:
-        del df[key]
+        del df[key]  # type:ignore[operator]
 
     df["fairsharing"] = df["fairsharing"].map(_parse_fairsharing_url, na_action="ignore")
     df = df[df["languages"] != "ja"]  # skip only japanese language database for now
-    del df["languages"]
+    del df["languages"]  # type:ignore[operator]
     # df["languages"] = df["languages"].map(_strip_split, na_action="ignore")
     df["target_keywords"] = df["target_keywords"].map(_strip_split, na_action="ignore")
     df["information_keywords"] = df["information_keywords"].map(_strip_split, na_action="ignore")
     df["pubmeds"] = df["references"].map(_parse_references, na_action="ignore")
     df["description"] = df["description"].map(lambda s: s.replace("\r\n", "\n"), na_action="ignore")
 
-    del df["references"]
+    del df["references"]  # type:ignore[operator]
     # TODO ground database maintenance with ROR?
     rv: dict[str, dict[str, Any]] = {}
     for _, row in df.iterrows():

bioregistry/external/integbio/processed.json

@@ -40479,5 +40479,135 @@
    "Genome/Gene",
    "Protein"
   ]
+ },
+ "nbdc02666": {
+  "alt_name": "quantification of Post-Translational Modifications",
+  "description": "qPTM is a database about quantitative phosphoproteome data. It contains 6 types of PTMs including acetylation, glycosylation, methylation, phosphorylation, SUMOylation, ubiquitylation in 4 different organisms including human, mouse, rat and yeast.",
+  "homepage": "http://qptm.omicsbio.info/",
+  "information_keywords": [
+   "Method",
+   "Sequence",
+   "3D structure",
+   "Bibliography/Documents"
+  ],
+  "maintainer": "Sun Yat-sen University Cancer Center",
+  "name": "qPTM",
+  "prefix": "NBDC02666",
+  "pubmeds": [
+   "30380102",
+   "36165955"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Epigenetics",
+   "Protein"
+  ]
+ },
+ "nbdc02667": {
+  "alt_name": "Chemical Exposure and the biomarker linkage Database",
+  "description": "CBLD is a database about small molecule chemical exposure and the exposure biomarkers found in experimental animal and human specimens. It contains name, CAS number and conformation of exposue  chemicals, or name, IUPAC name, molecular formula, functional group and exposure guidance value of biomarkers. CBLD allows user to add biomarkers.",
+  "homepage": "https://oe-blist-tvu3.glide.page/dl/a400f7",
+  "information_keywords": [
+   "Chemical structure",
+   "Repository"
+  ],
+  "maintainer": "Department of Biomolecular Sciences, Nagoya University Graduate School of Medicine||Japan Industrial Safety and Health Association",
+  "name": "CBLD",
+  "prefix": "NBDC02667",
+  "status": "Active",
+  "target_keywords": [
+   "Chemical compound"
+  ]
+ },
+ "nbdc02668": {
+  "alt_name": "Genomic Expression Archive",
+  "description": "Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.",
+  "homepage": "https://www.ddbj.nig.ac.jp/gea/index-e.html",
+  "information_keywords": [
+   "Sequence",
+   "Expression",
+   "Repository"
+  ],
+  "maintainer": "Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems",
+  "name": "GEA",
+  "prefix": "NBDC02668",
+  "pubmeds": [
+   "30357349"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Genome/Gene",
+   "cDNA/EST",
+   "Genetic variation",
+   "Epigenetics"
+  ]
+ },
+ "nbdc02669": {
+  "description": "LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional supported website and database that provides access to a large number of globally used lipidomics resources. LIPID MAPS® has internationally led the field of lipid curation, classification, and nomenclature since 2003. We strive to produce new open-access databases, informatics tools and lipidomics-focused training activities will be generated and made publicly available for researchers studying lipids in health and disease. LIPID MAPS® is currently funded by a multi-institutional grant from Wellcome, held jointly by Cardiff University, University of California San Diego, the Babraham Institute Cambridge, and Swansea University, as well as an Innovation Study funded by ELIXIR. This current phase will see that LIPID MAPS® is maintained and importantly, further developed in line with the global demand and development of lipidomics. LIPID MAPS® has an internationally recognized classification system and the largest curated lipid structure database in the world.",
+  "homepage": "https://www.lipidmaps.org/",
+  "information_keywords": [
+   "Ontology/Terminology/Nomenclature",
+   "Chemical structure",
+   "Interaction/Pathway",
+   "Classification"
+  ],
+  "maintainer": "BBSRC Babraham Institute||Cardiff University",
+  "name": "LIPID MAPS",
+  "prefix": "NBDC02669",
+  "pubmeds": [
+   "37855672",
+   "17584797",
+   "17098933",
+   "37855672",
+   "33564392",
+   "16381922"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Lipid"
+  ]
+ },
+ "nbdc02670": {
+  "description": "PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.",
+  "homepage": "https://pathbank.org/",
+  "information_keywords": [
+   "Chemical structure",
+   "Interaction/Pathway",
+   "Image/Movie"
+  ],
+  "maintainer": "Wishart Research Group, University of Alberta",
+  "name": "Pathbank",
+  "prefix": "NBDC02670",
+  "pubmeds": [
+   "31602464",
+   "37962386"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Protein",
+   "Metabolite"
+  ]
+ },
+ "nbdc02671": {
+  "description": "RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of databases representing a broad range of organisms and RNA types.",
+  "homepage": "https://rnacentral.org/",
+  "information_keywords": [
+   "Sequence",
+   "Expression",
+   "Bibliography/Documents",
+   "Portal"
+  ],
+  "maintainer": "European Bioinformatics Institute",
+  "name": "RNAcentral",
+  "prefix": "NBDC02671",
+  "pubmeds": [
+   "30395267"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Genome/Gene",
+   "RNA",
+   "Organism"
+  ]
  }
 }

bioregistry/external/lov/processed.json

@@ -7934,6 +7934,43 @@
     ],
     "homepage": "https://liidr.org/trust-recommendation-in-social-internet-of-things/"
   },
+  "dpp": {
+    "name": "Verisav Digital Product Passport Vocabulary",
+    "prefix": "dpp",
+    "uri_prefix": "https://ns.verisav.fr/dpp#$1",
+    "description": "Vocabulary for Digital Product Passports (DPP) managing product lifecycle, warranties, repairs, and compliance with EU regulations (ESPR EU 2024/1781). Aligned with GS1 Digital Link standards, including GTIN, GLN, granularity (model/batch/serial) and compound identifier support.",
+    "modified": "2025-12-28",
+    "keywords": [
+      "Food",
+      "Industry"
+    ],
+    "homepage": "https://ns.verisav.fr/dpp#"
+  },
+  "rma": {
+    "name": "Verisav RMA / Ticketing Vocabulary",
+    "prefix": "rma",
+    "uri_prefix": "https://ns.verisav.fr/rma#$1",
+    "description": "Vocabulary for Return Merchandise Authorization (RMA) and service ticket management, standardizing communication between consumers, retailers, and repairers.",
+    "modified": "2025-12-28",
+    "keywords": [
+      "Food",
+      "Industry"
+    ],
+    "homepage": "https://ns.verisav.fr/rma#"
+  },
+  "wty": {
+    "name": "Verisav Warranty & Contracts Vocabulary",
+    "prefix": "wty",
+    "uri_prefix": "https://ns.verisav.fr/wty#$1",
+    "description": "Vocabulary for machine-readable warranties and contracts, enabling complete automation of payment decisions and coverage assessment in after-sales service.",
+    "modified": "2025-12-28",
+    "keywords": [
+      "Contracts",
+      "Food",
+      "Industry"
+    ],
+    "homepage": "https://ns.verisav.fr/wty#"
+  },
   "ei2a": {
     "name": "Aragon Interoperable Information Structure Ontology\nEI2A",
     "prefix": "ei2a",