STIC-JPL 1.1.0__py3-none-any.whl → 1.2.2__py3-none-any.whl
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- STIC_JPL/FVC_from_NDVI.py +49 -0
- STIC_JPL/LAI_from_NDVI.py +61 -0
- STIC_JPL/STIC_JPL.py +3 -370
- STIC_JPL/celcius_to_kelvin.py +11 -0
- STIC_JPL/generate_STIC_inputs.py +65 -0
- STIC_JPL/initialize_with_solar.py +1 -2
- STIC_JPL/iterate_with_solar.py +1 -1
- STIC_JPL/model.py +372 -0
- STIC_JPL/process_STIC_table.py +61 -0
- STIC_JPL/soil_moisture_initialization.py +2 -1
- STIC_JPL/version.txt +1 -1
- {stic_jpl-1.1.0.dist-info → stic_jpl-1.2.2.dist-info}/METADATA +20 -10
- stic_jpl-1.2.2.dist-info/RECORD +25 -0
- {stic_jpl-1.1.0.dist-info → stic_jpl-1.2.2.dist-info}/WHEEL +1 -1
- STIC_JPL/diagnostic.py +0 -70
- STIC_JPL/meteorology_conversion/__init__.py +0 -1
- STIC_JPL/meteorology_conversion/meteorology_conversion.py +0 -123
- STIC_JPL/soil_heat_flux/__init__.py +0 -1
- STIC_JPL/soil_heat_flux/calculate_SEBAL_soil_heat_flux.py +0 -40
- STIC_JPL/timer/__init__.py +0 -1
- STIC_JPL/timer/timer.py +0 -77
- STIC_JPL/vegetation_conversion/__init__.py +0 -1
- STIC_JPL/vegetation_conversion/vegetation_conversion.py +0 -47
- stic_jpl-1.1.0.dist-info/RECORD +0 -28
- {stic_jpl-1.1.0.dist-info → stic_jpl-1.2.2.dist-info}/top_level.txt +0 -0
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from typing import Union
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import numpy as np
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import rasters as rt
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from rasters import Raster
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# gas constant for dry air in joules per kilogram per kelvin
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RD = 286.9
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# gas constant for moist air in joules per kilogram per kelvin
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RW = 461.5
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# specific heat of water vapor in joules per kilogram per kelvin
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CPW = 1846.0
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# specific heat of dry air in joules per kilogram per kelvin
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CPD = 1005.0
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def kelvin_to_celsius(T_K: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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convert temperature in kelvin to celsius.
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:param T_K: temperature in kelvin
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:return: temperature in celsius
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"""
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return T_K - 273.15
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def celcius_to_kelvin(T_C: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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convert temperature in celsius to kelvin.
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:param T_C: temperature in celsius
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:return: temperature in kelvin
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"""
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return T_C + 273.15
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def calculate_specific_humidity(
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Ea_Pa: Union[Raster, np.ndarray],
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Ps_Pa: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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Calculate the specific humidity of air as a ratio of kilograms of water to kilograms of air.
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Args:
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Ea_Pa (Union[Raster, np.ndarray]): Actual water vapor pressure in Pascal.
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surface_pressure_Pa (Union[Raster, np.ndarray]): Surface pressure in Pascal.
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Returns:
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Union[Raster, np.ndarray]: Specific humidity in kilograms of water per kilograms of air.
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"""
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return ((0.622 * Ea_Pa) / (Ps_Pa - (0.387 * Ea_Pa)))
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def calculate_specific_heat(specific_humidity: Union[Raster, np.ndarray]):
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# calculate specific heat capacity of the air (Cp)
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# in joules per kilogram per kelvin
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# from specific heat of water vapor (CPW)
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# and specific heat of dry air (CPD)
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Cp_Jkg = specific_humidity * CPW + (1 - specific_humidity) * CPD
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return Cp_Jkg
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def calculate_air_density(
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surface_pressure_Pa: Union[Raster, np.ndarray],
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Ta_K: Union[Raster, np.ndarray],
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specific_humidity: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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Calculate air density.
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Parameters:
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surface_pressure_Pa (Union[Raster, np.ndarray]): Surface pressure in Pascal.
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Ta_K (Union[Raster, np.ndarray]): Air temperature in Kelvin.
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specific_humidity (Union[Raster, np.ndarray]): Specific humidity.
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Returns:
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Union[Raster, np.ndarray]: Air density in kilograms per cubic meter.
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"""
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# numerator: Pa(N / m ^ 2 = kg * m / s ^ 2); denominator: J / kg / K * K)
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rhoD = surface_pressure_Pa / (RD * Ta_K)
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# calculate air density (rho) in kilograms per cubic meter
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rho = rhoD * ((1.0 + specific_humidity) / (1.0 + specific_humidity * (RW / RD)))
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return rho
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def SVP_kPa_from_Ta_C(Ta_C: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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Calculate the saturation vapor pressure in kiloPascal (kPa) from air temperature in Celsius.
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Parameters:
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Ta_C (Union[Raster, np.ndarray]): Air temperature in Celsius.
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Returns:
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Union[Raster, np.ndarray]: Saturation vapor pressure in kPa.
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"""
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SVP_kPa = np.clip(0.611 * np.exp((Ta_C * 17.27) / (Ta_C + 237.7)), 1, None)
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return SVP_kPa
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def SVP_Pa_from_Ta_C(Ta_C: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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Calculate the saturation vapor pressure in Pascal (Pa) from the air temperature in Celsius (Ta_C).
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Parameters:
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Ta_C (Union[Raster, np.ndarray]): Air temperature in Celsius.
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Returns:
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Union[Raster, np.ndarray]: Saturation vapor pressure in Pascal (Pa).
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"""
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return SVP_kPa_from_Ta_C(Ta_C) * 1000
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def calculate_surface_pressure(elevation_m: Union[Raster, np.ndarray], Ta_C: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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Calculate surface pressure using elevation and air temperature.
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Parameters:
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elevation_m (Union[Raster, np.ndarray]): Elevation in meters.
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Ta_K (Union[Raster, np.ndarray]): Air temperature in Kelvin.
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Returns:
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Union[Raster, np.ndarray]: Surface pressure in Pascal (Pa).
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"""
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Ta_K = kelvin_to_celsius(Ta_C)
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Ps_Pa = 101325.0 * (1.0 - 0.0065 * elevation_m / Ta_K) ** (9.807 / (0.0065 * 287.0)) # [Pa]
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return Ps_Pa
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from .calculate_SEBAL_soil_heat_flux import calculate_SEBAL_soil_heat_flux
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from typing import Union
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import numpy as np
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import rasters as rt
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from rasters import Raster
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def calculate_SEBAL_soil_heat_flux(
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Rn: Union[Raster, np.ndarray],
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ST_C: Union[Raster, np.ndarray],
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NDVI: Union[Raster, np.ndarray],
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albedo: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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This function calculates the soil heat flux (G) in the Surface Energy Balance Algorithm for Land (SEBAL) model.
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The formula used in the function is a simplification of the more complex relationship between these variables in the energy balance at the surface.
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Parameters:
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Rn (np.ndarray): Net radiation at the surface.
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ST_C (np.ndarray): Surface temperature in Celsius.
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NDVI (np.ndarray): Normalized Difference Vegetation Index, indicating the presence and condition of vegetation.
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albedo (np.ndarray): Measure of the diffuse reflection of solar radiation.
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Returns:
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np.ndarray: The soil heat flux (G), a key component in the energy balance.
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Reference:
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"Evapotranspiration Estimation Based on Remote Sensing and the SEBAL Model in the Bosten Lake Basin of China" [^1^][1]
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"""
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# Empirical coefficients used in the calculation
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coeff1 = 0.0038
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coeff2 = 0.0074
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# Vegetation cover correction factor
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NDVI_correction = 1 - 0.98 * NDVI ** 4
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# Calculation of the soil heat flux (G)
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G = Rn * ST_C * (coeff1 + coeff2 * albedo) * NDVI_correction
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G = rt.clip(G, 0, None)
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return G
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STIC_JPL/timer/__init__.py
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from .timer import *
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STIC_JPL/timer/timer.py
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"""
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This is a minimalistic performance timer.
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"""
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import time
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__author__ = "Gregory Halverson"
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DEFAULT_FORMAT = "0.2f"
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class Timer(object):
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"""
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This is a minimalistic performance timer.
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"""
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def __init__(self):
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self._start_time = None
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self._end_time = None
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self.start()
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def __enter__(self, *args, **kwargs):
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self.start()
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return self
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def __exit__(self, *args, **kwargs):
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self.end()
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def __repr__(self):
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# print("Timer.__repr__")
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return self.__format__(format_string=DEFAULT_FORMAT)
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def __str__(self):
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# print("Timer.__str__")
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return self.__repr__()
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def __format__(self, format_string=DEFAULT_FORMAT):
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if format_string is None or format_string == "":
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format_string = DEFAULT_FORMAT
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return format(self.duration, format_string)
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@property
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def now(self):
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# return datetime.now()
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return time.perf_counter()
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def start(self):
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self._start_time = self.now
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return self.start_time
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@property
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def start_time(self):
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return self._start_time
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def end(self):
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self._end_time = self.now
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return self.end_time
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@property
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def end_time(self):
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return self._end_time
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@property
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def duration(self):
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if self.start_time is None:
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raise Exception("timer never started")
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if self.end_time is None:
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end_time = self.now
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else:
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end_time = self.end_time
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from .vegetation_conversion import *
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KPAR = 0.5
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MIN_FIPAR = 0.0
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MAX_FIPAR = 1.0
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MIN_LAI = 0.0
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MAX_LAI = 10.0
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def FVC_from_NDVI(NDVI: Union[Raster, np.ndarray]) -> Union[Raster, np.ndarray]:
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"""
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Convert Normalized Difference Vegetation Index (NDVI) to Fractional Vegetation Cover (FVC).
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NDVI (Union[Raster, np.ndarray]): Input NDVI data.
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Returns:
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Union[Raster, np.ndarray]: Converted FVC data.
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"""
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NDVIv = 0.52 # +- 0.03
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NDVIs = 0.04 # +- 0.03
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FVC = rt.clip((NDVI - NDVIs) / (NDVIv - NDVIs), 0.0, 1.0)
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return FVC
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def LAI_from_NDVI(
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NDVI: Union[Raster, np.ndarray],
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min_fIPAR: float = MIN_FIPAR,
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max_fIPAR: float = MAX_FIPAR,
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min_LAI: float = MIN_LAI,
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max_LAI: float = MAX_LAI) -> Union[Raster, np.ndarray]:
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"""
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Convert Normalized Difference Vegetation Index (NDVI) to Leaf Area Index (LAI).
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Parameters:
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NDVI (Union[Raster, np.ndarray]): Input NDVI data.
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Returns:
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Union[Raster, np.ndarray]: Converted LAI data.
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"""
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fIPAR = rt.clip(NDVI - 0.05, min_fIPAR, max_fIPAR)
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fIPAR = np.where(fIPAR == 0, np.nan, fIPAR)
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LAI = rt.clip(-np.log(1 - fIPAR) * (1 / KPAR), min_LAI, max_LAI)
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return LAI
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stic_jpl-1.1.0.dist-info/RECORD
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STIC_JPL/STIC_JPL.py,sha256=a0EpRTX6Sd75RPIqAzWckIuj9-KwbCE8T1aSEDpLM-c,17434
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STIC_JPL/__init__.py,sha256=FmTp-Ir0Wbae0SbZgxlNIxq48TDrWCev17Gv1hWskxU,216
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3
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STIC_JPL/canopy_air_stream.py,sha256=UYp3l7mt0XH4SqvCGZhRzCIL-v7-Rvxxfm-C81lheSU,1637
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STIC_JPL/closure.py,sha256=AzWoLnpoZ1MlQAKq0CgpmCMfDGVsp8-hYZ50ry33cic,4031
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STIC_JPL/constants.py,sha256=xIVTsdc3_Rf3EPSgSk1QPjWiojFGn4lf1Swffov3oTM,595
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STIC_JPL/diagnostic.py,sha256=RXjtZbCEJMiTyRuiMGUvekDgO_GcrhXVXvorR0WlAsk,2613
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STIC_JPL/initialize_with_solar.py,sha256=6DUUHdVfeKvDk1pf_bOteSW8qd-n9pU4dowO1sMYOpw,3825
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8
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STIC_JPL/initialize_without_solar.py,sha256=M_7QfP2pr2w5sQO7UOW1GPqxpmQkjmsQ526BgYVVALk,4675
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9
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STIC_JPL/iterate_with_solar.py,sha256=WKySvuIJ4HzcDni0UYafmk5lXex2lJfde82kGnGUDI8,6368
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10
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STIC_JPL/iterate_without_solar.py,sha256=09RERpN6tdZr6ORDhMwEFXwx8941vyn1HMJQ-Q_bY6s,6140
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11
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STIC_JPL/net_radiation.py,sha256=Uwudsazul8V-x5t8KQLi3wpYi-wjMwT__eqZCRV2bIw,1187
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12
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STIC_JPL/root_zone_initialization.py,sha256=3JVKNDt3ebIiGVfuhBawjKs-BicNwkbfMprkzSxd4Cg,1581
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STIC_JPL/root_zone_iteration.py,sha256=1XOMFE3-TdJZzUU5vouflUO4NKaZwAW6s1KJrNez3Es,3787
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14
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STIC_JPL/soil_moisture_initialization.py,sha256=YF0GcHkpH5amABNPpxD8f1lLPRyIAkG2dYJTfEuIX4g,5599
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STIC_JPL/soil_moisture_iteration.py,sha256=QJXOPMxxwIIskpx9zLkXUPfuhWgFPUBcRnGhZo2UjAw,6493
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16
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STIC_JPL/version.txt,sha256=rqWtvvV0eFJzxPOcG3aHz4AZk-DLa_Z4GkFonk7bsgw,5
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17
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STIC_JPL/meteorology_conversion/__init__.py,sha256=dLF40imqJCC_l8_QMetbsj1YzkXZuFt9tQ2fsd7Wcdw,38
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STIC_JPL/meteorology_conversion/meteorology_conversion.py,sha256=8vzx71FLLNhR5v6EQBL8OSgAmupQcgdLX2c9tL9TPxA,4202
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STIC_JPL/soil_heat_flux/__init__.py,sha256=bN0dHUfqR9ob68M1TqdjQTK3kmaL5S4P08yK0Thub6k,74
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STIC_JPL/soil_heat_flux/calculate_SEBAL_soil_heat_flux.py,sha256=PZylUGET5-Uj6BGfhOeqS4tp2pGE__gdc5X1nidLjxw,1516
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STIC_JPL/timer/__init__.py,sha256=I_MQKp_aamBLUzZv0psEbRgs6GZLOJd4mmJ7bli0Ikc,21
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22
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STIC_JPL/timer/timer.py,sha256=tn5e3NQmsh55Jp9Fstjf-8KJW4F8UIJs-d_ZLooFYE8,1610
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STIC_JPL/vegetation_conversion/__init__.py,sha256=8gnz0yK_euCV0TtVGDrSGaVfx4g0EJCG2J68ppuA5oc,37
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STIC_JPL/vegetation_conversion/vegetation_conversion.py,sha256=-K3FLV6pXkpxtRxQvimqqkXAgkn9mUUlHQ8FIscq1Zg,1306
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25
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stic_jpl-1.1.0.dist-info/METADATA,sha256=sDO9vRDdU6d-qTxHfk-0ZoCLX5ZyT1o1F086M0hbqWA,5348
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stic_jpl-1.1.0.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
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27
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stic_jpl-1.1.0.dist-info/top_level.txt,sha256=9NkchxttzACJcGcAaWzMaZarzX40OXQ216hERNA9LIo,9
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28
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stic_jpl-1.1.0.dist-info/RECORD,,
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