EvoScientist 0.0.1.dev2__py3-none-any.whl

EvoScientist/skills/ml-paper-writing/templates/colm2025/colm2025_conference.sty

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+%%%% COLM Macros (LaTex)
+%%%% Adapted by Yoav Artzi and Sasha Rush from Hugo Larochelle's adaptation for ICLR, which has been adaptated from the NIPS stylefile Macros
+%%%% Style File
+%%%% Dec 12, 1990   Rev Aug 14, 1991; Sept, 1995; April, 1997; April, 1999; October 2014
+
+% This file can be used with Latex2e whether running in main mode, or
+% 2.09 compatibility mode.
+%
+% If using main mode, you need to include the commands
+%             \documentclass{article}
+%             \usepackage{colm14submit_e}
+%
+
+% Define options
+\newif\ifcolmsubmission
+\newif\ifcolmpreprint
+\newif\ifcolmfinal
+
+% Set submission as default
+\colmsubmissiontrue
+\colmpreprintfalse
+\colmfinalfalse
+
+% Define option handling
+\DeclareOption{submission}{\colmsubmissiontrue\colmpreprintfalse\colmfinalfalse}
+\DeclareOption{preprint}{\colmsubmissionfalse\colmpreprinttrue\colmfinalfalse}
+\DeclareOption{final}{\colmsubmissionfalse\colmpreprintfalse\colmfinaltrue}
+\ProcessOptions\relax
+
+
+% Palatino font
+\RequirePackage{tgpagella} % text only
+\RequirePackage{mathpazo}  % math & text
+\RequirePackage{inconsolata} % for tt font
+
+% Change the overall width of the page.  If these parameters are
+%       changed, they will require corresponding changes in the
+%       maketitle section.
+%
+\usepackage{eso-pic} % used by \AddToShipoutPicture
+\RequirePackage{fancyhdr}
+\RequirePackage{natbib}
+
+% modification to natbib citations
+\setcitestyle{authoryear,round,citesep={;},aysep={,},yysep={;}}
+
+\renewcommand{\topfraction}{0.95}   % let figure take up nearly whole page
+\renewcommand{\textfraction}{0.05}  % let figure take up nearly whole page
+
+
+% Specify the dimensions of each page
+
+\setlength{\paperheight}{11in}
+\setlength{\paperwidth}{8.5in}
+
+
+\oddsidemargin .5in    %   Note \oddsidemargin = \evensidemargin
+\evensidemargin .5in
+\marginparwidth 0.07 true in
+%\marginparwidth 0.75 true in
+%\topmargin 0 true pt           % Nominal distance from top of page to top of
+%\topmargin 0.125in
+\topmargin -0.625in
+\addtolength{\headsep}{0.25in}
+\textheight 9.0 true in       % Height of text (including footnotes & figures)
+\textwidth 5.5 true in        % Width of text line.
+\widowpenalty=10000
+\clubpenalty=10000
+
+% \thispagestyle{empty}        \pagestyle{empty}
+\flushbottom \sloppy
+
+% We're never going to need a table of contents, so just flush it to
+% save space --- suggested by drstrip@sandia-2
+\def\addcontentsline#1#2#3{}
+
+% Title stuff, taken from deproc.
+\def\maketitle{\par
+\begingroup
+   \def\thefootnote{\fnsymbol{footnote}}
+   \def\@makefnmark{\hbox to 0pt{$^{\@thefnmark}$\hss}} % for perfect author
+                                                        % name centering
+%   The footnote-mark was overlapping the footnote-text,
+%   added the following to fix this problem               (MK)
+   \long\def\@makefntext##1{\parindent 1em\noindent
+                            \hbox to1.8em{\hss $\m@th ^{\@thefnmark}$}##1}
+   \@maketitle \@thanks
+\endgroup
+\setcounter{footnote}{0}
+\let\maketitle\relax \let\@maketitle\relax
+\gdef\@thanks{}\gdef\@author{}\gdef\@title{}\let\thanks\relax}
+
+% The toptitlebar has been raised to top-justify the first page
+
+\usepackage{fancyhdr}
+\pagestyle{fancy}
+\renewcommand{\headrulewidth}{1.5pt}
+\fancyhead{}
+
+% Title (includes both anonymized and non-anonymized versions)
+\def\@maketitle{\vbox{\hsize\textwidth
+%\linewidth\hsize \vskip 0.1in \toptitlebar \centering
+{\Large\bf \@title\par}
+%\bottomtitlebar % \vskip 0.1in %  minus
+\ifcolmfinal
+    \lhead{Published as a conference paper at COLM 2025}
+    \def\And{\end{tabular}\hfil\linebreak[0]\hfil
+            \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\ignorespaces}%
+  \def\AND{\end{tabular}\hfil\linebreak[4]\hfil
+            \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\ignorespaces}%
+    \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\@author\end{tabular}%
+\else\ifcolmpreprint
+\lhead{Preprint. Under review.}
+\def\And{\end{tabular}\hfil\linebreak[0]\hfil
+        \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\ignorespaces}%
+\def\AND{\end{tabular}\hfil\linebreak[4]\hfil
+        \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\ignorespaces}%
+\begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\@author\end{tabular}%
+\else
+\lhead{Under review as a conference paper at COLM 2025}
+   \def\And{\end{tabular}\hfil\linebreak[0]\hfil
+            \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\ignorespaces}%
+  \def\AND{\end{tabular}\hfil\linebreak[4]\hfil
+            \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}\ignorespaces}%
+    \begin{tabular}[t]{l}\bf\rule{\z@}{24pt}Anonymous authors\\Paper under double-blind review\end{tabular}%
+\fi\fi
+\vskip 0.3in minus 0.1in}}
+
+\renewenvironment{abstract}{\vskip.075in\centerline{\large\bf
+Abstract}\vspace{0.5ex}\begin{quote}}{\par\end{quote}\vskip 1ex}
+
+% Less leading in most fonts (due to the narrow columns)
+% The choices were between 1-pt and 1.5-pt leading
+%\def\@normalsize{\@setsize\normalsize{11pt}\xpt\@xpt} % got rid of @ (MK)
+\def\normalsize{\@setsize\normalsize{11pt}\xpt\@xpt}
+\def\small{\@setsize\small{10pt}\ixpt\@ixpt}
+\def\footnotesize{\@setsize\footnotesize{10pt}\ixpt\@ixpt}
+\def\scriptsize{\@setsize\scriptsize{8pt}\viipt\@viipt}
+\def\tiny{\@setsize\tiny{7pt}\vipt\@vipt}
+\def\large{\@setsize\large{14pt}\xiipt\@xiipt}
+\def\Large{\@setsize\Large{16pt}\xivpt\@xivpt}
+\def\LARGE{\@setsize\LARGE{20pt}\xviipt\@xviipt}
+\def\huge{\@setsize\huge{23pt}\xxpt\@xxpt}
+\def\Huge{\@setsize\Huge{28pt}\xxvpt\@xxvpt}
+
+
+
+% sections with less space
+\def\section{\@startsection {section}{1}{\z@}{-2.0ex plus
+    -0.5ex minus -.2ex}{1.5ex plus 0.3ex
+minus0.2ex}{\large\bf\raggedright}}
+
+\def\subsection{\@startsection{subsection}{2}{\z@}{-1.8ex plus
+-0.5ex minus -.2ex}{0.8ex plus .2ex}{\normalsize\bf\raggedright}}
+\def\subsubsection{\@startsection{subsubsection}{3}{\z@}{-1.5ex
+plus      -0.5ex minus -.2ex}{0.5ex plus
+.2ex}{\normalsize\bf\itshape\raggedright}}
+\def\paragraph{\@startsection{paragraph}{4}{\z@}{1.5ex plus
+0.5ex minus .2ex}{-1em}{\normalsize\bf}}
+\def\subparagraph{\@startsection{subparagraph}{5}{\z@}{1.5ex plus
+  0.5ex minus .2ex}{-1em}{\normalsize\it}}
+\def\subsubsubsection{\vskip
+5pt{\noindent\normalsize\raggedright}}
+
+
+% Footnotes
+\footnotesep 6.65pt %
+\skip\footins 9pt plus 4pt minus 2pt
+\def\footnoterule{\kern-3pt \hrule width 12pc \kern 2.6pt }
+\setcounter{footnote}{0}
+
+% Lists and paragraphs
+\parindent 0pt
+\topsep 4pt plus 1pt minus 2pt
+\partopsep 1pt plus 0.5pt minus 0.5pt
+\itemsep 2pt plus 1pt minus 0.5pt
+\parsep 2pt plus 1pt minus 0.5pt
+\parskip .5pc
+
+
+%\leftmargin2em
+\leftmargin3pc
+\leftmargini\leftmargin \leftmarginii 2em
+\leftmarginiii 1.5em \leftmarginiv 1.0em \leftmarginv .5em
+
+%\labelsep \labelsep 5pt
+
+\def\@listi{\leftmargin\leftmargini}
+\def\@listii{\leftmargin\leftmarginii
+   \labelwidth\leftmarginii\advance\labelwidth-\labelsep
+   \topsep 2pt plus 1pt minus 0.5pt
+   \parsep 1pt plus 0.5pt minus 0.5pt
+   \itemsep \parsep}
+\def\@listiii{\leftmargin\leftmarginiii
+    \labelwidth\leftmarginiii\advance\labelwidth-\labelsep
+    \topsep 1pt plus 0.5pt minus 0.5pt
+    \parsep \z@ \partopsep 0.5pt plus 0pt minus 0.5pt
+    \itemsep \topsep}
+\def\@listiv{\leftmargin\leftmarginiv
+     \labelwidth\leftmarginiv\advance\labelwidth-\labelsep}
+\def\@listv{\leftmargin\leftmarginv
+     \labelwidth\leftmarginv\advance\labelwidth-\labelsep}
+\def\@listvi{\leftmargin\leftmarginvi
+     \labelwidth\leftmarginvi\advance\labelwidth-\labelsep}
+
+\abovedisplayskip 7pt plus2pt minus5pt%
+\belowdisplayskip \abovedisplayskip
+\abovedisplayshortskip  0pt plus3pt%
+\belowdisplayshortskip  4pt plus3pt minus3pt%
+
+
+\def\toptitlebar{\hrule height4pt\vskip .25in\vskip-\parskip}
+
+\def\bottomtitlebar{\vskip .29in\vskip-\parskip\hrule height1pt\vskip
+.09in} %
+%Reduced second vskip to compensate for adding the strut in \@author
+
+

EvoScientist/skills/ml-paper-writing/templates/colm2025/colm2025_conference.tex

@@ -0,0 +1,305 @@
+
+\documentclass{article} % For LaTeX2e
+\usepackage[submission]{colm2025_conference}
+
+\usepackage{microtype}
+\usepackage{hyperref}
+\usepackage{url}
+\usepackage{booktabs}
+
+\usepackage{lineno}
+
+\definecolor{darkblue}{rgb}{0, 0, 0.5}
+\hypersetup{colorlinks=true, citecolor=darkblue, linkcolor=darkblue, urlcolor=darkblue}
+
+
+\title{Formatting Instructions for COLM 2025 \\ Conference Submissions}
+
+% Authors must not appear in the submitted version. They should be hidden
+% as long as the \colmfinalcopy macro remains commented out below.
+% Non-anonymous submissions will be rejected without review.
+
+\author{Antiquus S.~Hippocampus, Natalia Cerebro \& Amelie P. Amygdale \thanks{ Use footnote for providing further information
+about author (webpage, alternative address)---\emph{not} for acknowledging
+funding agencies.  Funding acknowledgements go at the end of the paper.} \\
+Department of Computer Science\\
+Cranberry-Lemon University\\
+Pittsburgh, PA 15213, USA \\
+\texttt{\{hippo,brain,jen\}@cs.cranberry-lemon.edu} \\
+\And
+Ji Q. Ren \& Yevgeny LeNet \\
+Department of Computational Neuroscience \\
+University of the Witwatersrand \\
+Joburg, South Africa \\
+\texttt{\{robot,net\}@wits.ac.za} \\
+\AND
+Coauthor \\
+Affiliation \\
+Address \\
+\texttt{email}
+}
+
+% The \author macro works with any number of authors. There are two commands
+% used to separate the names and addresses of multiple authors: \And and \AND.
+%
+% Using \And between authors leaves it to \LaTeX{} to determine where to break
+% the lines. Using \AND forces a linebreak at that point. So, if \LaTeX{}
+% puts 3 of 4 authors names on the first line, and the last on the second
+% line, try using \AND instead of \And before the third author name.
+
+\newcommand{\fix}{\marginpar{FIX}}
+\newcommand{\new}{\marginpar{NEW}}
+
+\begin{document}
+
+\ifcolmsubmission
+\linenumbers
+\fi
+
+\maketitle
+
+\begin{abstract}
+The abstract paragraph should be indented 1/2~inch (3~picas) on both left and
+right-hand margins. Use 10~point type, with a vertical spacing of 11~points.
+The word \textit{Abstract} must be centered and in point size 12. Two
+line spaces precede the abstract. The abstract must be limited to one
+paragraph.
+\end{abstract}
+
+\section{Submission of conference papers to COLM 2025}
+
+COLM requires electronic submissions, processed by
+\url{https://openreview.net/}. See COLM's website for more instructions.
+The format for the submissions is a variant of the NeurIPS and ICLR formats.
+Please read carefully the instructions below, and follow them
+faithfully.
+
+
+\subsection{Style}
+
+Papers to be submitted to COLM 2025 must be prepared according to the
+instructions presented here.
+
+%% Please note that we have introduced automatic line number generation
+%% into the style file for \LaTeXe. This is to help reviewers
+%% refer to specific lines of the paper when they make their comments. Please do
+%% NOT refer to these line numbers in your paper as they will be removed from the
+%% style file for the final version of accepted papers.
+
+Authors are required to use the COLM \LaTeX{} style files obtainable at the
+COLM website. Please make sure you use the current files and
+not previous versions. Tweaking the style files may be grounds for rejection.
+
+\subsubsection{Copy Options}
+
+If your paper is ultimately accepted, the option {\tt
+  {\textbackslash}final} should be set  for the {\tt {\textbackslash}usepackage[submission]\{colm2025\_conference\}} command for the camera ready version. The {\tt submission} options is the default, and is to be used for all submissions during the review process. It also turns on the line numbers. If you wish to submit a preprint, the option {\tt preprint} should be used.
+  
+  
+
+\subsection{Retrieval of style files}
+
+The style files for COLM and other conference information are available online at:
+\begin{center}
+   \url{http://www.colmweb.org/}
+\end{center}
+The file \verb+colm2025_conference.pdf+ contains these
+instructions and illustrates the
+various formatting requirements your COLM paper must satisfy.
+Submissions must be made using \LaTeX{} and the style files
+\verb+colm2025_conference.sty+ and \verb+colm2025_conference.bst+ (to be used with \LaTeX{}2e). The file
+\verb+colm2025_conference.tex+ may be used as a ``shell'' for writing your paper. All you
+have to do is replace the author, title, abstract, and text of the paper with
+your own.
+
+The formatting instructions contained in these style files are summarized in
+sections \ref{gen_inst}, \ref{headings}, and \ref{others} below.
+
+\section{General formatting instructions}
+\label{gen_inst}
+
+The text must be confined within a rectangle 5.5~inches (33~picas) wide and
+9~inches (54~picas) long. The left margin is 1.5~inch (9~picas).
+Use 10~point type with a vertical spacing of 11~points. Palatino is the
+preferred typeface throughout, and is mandatory for the main text. Paragraphs are separated by 1/2~line space, with no indentation. 
+
+Paper title is 17~point and left-aligned.
+All pages should start at 1~inch (6~picas) from the top of the page.
+
+Please verify that any custom header information you may add does not override the style defined in this document. This has been known to occur especially when submissions are converted to a new template from a previous one (i.e., for re-submission to a different venue). 
+
+Authors' names are
+set in boldface, and each name is placed above its corresponding
+address. The lead author's name is to be listed first, and
+the co-authors' names are set to follow. Authors sharing the
+same address can be on the same line.
+
+Please pay special attention to the instructions in section \ref{others}
+regarding figures, tables, acknowledgements, and references.
+
+
+There will be a strict upper limit of 9 pages for the main text of the initial submission, with unlimited additional pages for citations. 
+
+We strongly recommend following arXiv's guidelines for making your paper friendly for HTML conversion: \url{https://info.arxiv.org/help/submit_latex_best_practices.html}.
+
+
+\section{Headings: first level}
+\label{headings}
+
+First level headings are in lower case (except for first word and proper nouns), bold face,
+flush left and in point size 12. One line space before the first level
+heading and 1/2~line space after the first level heading.
+
+\subsection{Headings: second level}
+
+Second level headings are in lower case (except for first word and proper nouns), bold face,
+flush left and in point size 10. One line space before the second level
+heading and 1/2~line space after the second level heading.
+
+\subsubsection{Headings: third level}
+
+Third level headings are in lower case (except for first word and proper nouns), bold face, italics, 
+flush left and in point size 10. One line space before the third level
+heading and 1/2~line space after the third level heading.
+
+\section{Citations, figures, tables, references}\label{others}
+
+These instructions apply to everyone, regardless of the formatter being used.
+
+\subsection{Citations within the text}
+
+Citations within the text should be based on the \texttt{natbib} package
+and include the authors' last names and year (with the ``et~al.'' construct
+for more than two authors). When the authors or the publication are
+included in the sentence, the citation should not be in parenthesis using \verb|\citet{}| (as
+in ``See \citet{Vaswani+2017} for more information.''). Otherwise, the citation
+should be in parenthesis using \verb|\citep{}| (as in ``Transformers are a key tool
+for developing language models~\citep{Vaswani+2017}.'').
+
+The corresponding references are to be listed in alphabetical order of
+authors, in the \textsc{References} section. As to the format of the
+references themselves, any style is acceptable as long as it is used
+consistently.
+
+\subsection{Footnotes}
+
+Indicate footnotes with a number\footnote{Sample of the first footnote} in the
+text. Place the footnotes at the bottom of the page on which they appear.
+Precede the footnote with a horizontal rule of 2~inches
+(12~picas).\footnote{Sample of the second footnote}
+
+\subsection{Figures}
+
+All artwork must be neat, clean, and legible. Lines should be dark
+enough for purposes of reproduction; art work should not be
+hand-drawn. Any text within the figure must be readable. We ask to not use font sizes below {\tt small}. We strongly recommend to use vector representations (e.g., pdf or svg) for all diagrams. 
+We strongly recommend positioning all figures at the top or bottom of the page.
+
+The figure number and caption always appear below the figure. Place one line space before the figure caption, and one line space after the figure. The figure caption is lower case (except for first word and proper nouns); figures are numbered consecutively.
+Make sure the figure caption does not get separated from the figure.
+Leave sufficient space to avoid splitting the figure and figure caption.
+
+You may use color figures.
+However, it is best for the
+figure captions and the paper body to make sense if the paper is printed
+either in black/white or in color.
+\begin{figure}[t]
+\begin{center}
+%\framebox[4.0in]{$\;$}
+\fbox{\rule[-.5cm]{0cm}{4cm} \rule[-.5cm]{4cm}{0cm}}
+\end{center}
+\caption{Sample figure caption.}
+\end{figure}
+
+\subsection{Tables}
+
+All tables must be centered, neat, clean and legible. Do not use hand-drawn tables. The table number and title always appear below the table. See Table~\ref{sample-table}. Please do not use font sizes below {\tt small} in tables. We recommend using {\tt booktabs} or a similar package to style tables. 
+We strongly recommend positioning all tables at the top or bottom of the page.
+
+Place one line space before the table title, one line space after the table title, and one line space after the table. The table title must be lowercase (except for first word and proper nouns); tables are numbered consecutively.
+
+\begin{table}[t]
+\begin{center}
+\begin{tabular}{ll}
+\toprule
+\multicolumn{1}{c}{\bf PART}  &\multicolumn{1}{c}{\bf DESCRIPTION} \\
+\midrule
+Dendrite         &Input terminal \\
+Axon             &Output terminal \\
+Soma             &Cell body (contains cell nucleus) \\
+\bottomrule
+\end{tabular}
+\end{center}
+\caption{Sample table title}\label{sample-table}
+\end{table}
+
+
+
+
+\section{Final instructions}
+Do not change any aspects of the formatting parameters in the style files.
+In particular, do not modify the width or length of the rectangle the text
+should fit into, and do not change font sizes (except perhaps in the
+\textsc{References} section; see below). Please note that pages should be
+numbered.
+
+\section{Preparing PostScript or PDF files}
+
+Please prepare PostScript or PDF files with paper size ``US Letter'', and
+not, for example, ``A4''. The -t
+letter option on dvips will produce US Letter files.
+
+Consider directly generating PDF files using \verb+pdflatex+
+(especially if you are a MiKTeX user).
+PDF figures must be substituted for EPS figures, however.
+
+Otherwise, please generate your PostScript and PDF files with the following commands:
+\begin{verbatim}
+dvips mypaper.dvi -t letter -Ppdf -G0 -o mypaper.ps
+ps2pdf mypaper.ps mypaper.pdf
+\end{verbatim}
+
+\subsection{Margins in LaTeX}
+
+Most of the margin problems come from figures positioned by hand using
+\verb+\special+ or other commands. We suggest using the command
+\verb+\includegraphics+
+from the graphicx package. Always specify the figure width as a multiple of
+the line width as in the example below using .eps graphics
+\begin{verbatim}
+   \usepackage[dvips]{graphicx} ...
+   \includegraphics[width=0.8\linewidth]{myfile.eps}
+\end{verbatim}
+or % Apr 2009 addition
+\begin{verbatim}
+   \usepackage[pdftex]{graphicx} ...
+   \includegraphics[width=0.8\linewidth]{myfile.pdf}
+\end{verbatim}
+for .pdf graphics.
+See section~4.4 in the graphics bundle documentation (\url{http://www.ctan.org/tex-archive/macros/latex/required/graphics/grfguide.ps})
+
+A number of width problems arise when LaTeX cannot properly hyphenate a
+line. Please give LaTeX hyphenation hints using the \verb+\-+ command.
+
+\section*{Author Contributions}
+If you'd like to, you may include  a section for author contributions as is done
+in many journals. This is optional and at the discretion of the authors.
+
+\section*{Acknowledgments}
+Use unnumbered first level headings for the acknowledgments. All
+acknowledgments, including those to funding agencies, go at the end of the paper.
+
+\section*{Ethics Statement}
+Authors can add an optional ethics statement to the paper. 
+For papers that touch on ethical issues, this section will be evaluated as part of the review process. The ethics statement should come at the end of the paper. It does not count toward the page limit, but should not be more than 1 page. 
+
+
+
+\bibliography{colm2025_conference}
+\bibliographystyle{colm2025_conference}
+
+\appendix
+\section{Appendix}
+You may include other additional sections here.
+
+\end{document}