AeroViz 0.1.0__py3-none-any.whl

AeroViz/tools/database.py

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+from io import StringIO
+from pathlib import Path
+from typing import Literal
+
+from pandas import read_csv, DataFrame
+
+
+def load_default_chemical_data():
+	# The following data is from the chemical composition of real atmospheric particles.
+	#
+	# The six main chemical components that comprised PM2.5 are listed in the data.
+	# Here, we test the radar charts to see if we can clearly identify how the
+	# chemical components vary between the three pollutant scenarios:
+	#
+	#  1) Whole sampling period (Total)
+	#  2) Clean period (Clean)
+	#  3) Transition period (Transition)
+	#  4) Event period (Event)
+
+	data = {
+		'Sulfate': [0.01, 0.34, 0.02, 0.71],
+		'Nitrate': [0.88, 0.13, 0.34, 0.13],
+		'OC': [0.07, 0.95, 0.04, 0.05],
+		'EC': [0.20, 0.02, 0.85, 0.19],
+		'Soil': [0.20, 0.10, 0.07, 0.01],
+		'SS': [0.20, 0.10, 0.07, 0.01]
+	}
+
+	return DataFrame(data, index=['Total', 'Clean', 'Transition', 'Event'])
+
+
+def load_dataset_by_url(dataset_name: Literal["Tunghai", "Taipei"] = "Tunghai") -> DataFrame:
+	import requests
+	dataset_uris = {
+		"Tunghai": "https://raw.githubusercontent.com/alex870521/DataPlot/main/DataPlot/config/default_data.csv"
+	}
+
+	# Ensure the dataset name is valid
+	if dataset_name not in dataset_uris:
+		raise ValueError(f"Dataset {dataset_name} is not supported.")
+
+	url = dataset_uris[dataset_name]
+
+	# Make a request to the URL
+	response = requests.get(url)
+
+	if response.status_code == 200:
+		return read_csv(StringIO(response.text), parse_dates=['Time'], index_col='Time')
+	else:
+		print(f"Failed to download file: {response.status_code}")
+		print(response.text)  # Print the response text for debugging
+		return DataFrame()  # Return an empty DataFrame in case of failure
+
+
+def load_dataset_local(dataset_name: Literal["Tunghai", "Taipei"] = "Tunghai") -> DataFrame:
+	base_dir = Path(__file__).resolve().parent.parent
+	config_dir = base_dir / 'config'
+
+	dataset_paths = {
+		"Tunghai": config_dir / 'DEFAULT_DATA.csv',
+		"Taipei": config_dir / 'DEFAULT_DATA.csv',
+	}
+
+	if dataset_name not in dataset_paths:
+		raise ValueError(f"Dataset {dataset_name} is not supported.")
+
+	file_path = dataset_paths[dataset_name]
+
+	if not file_path.exists():
+		raise FileNotFoundError(f"The file {file_path} does not exist.")
+
+	return read_csv(file_path, parse_dates=['Time'], index_col='Time', na_values=('-', 'E', 'F'), low_memory=False)
+
+
+class DataBase:
+	def __new__(cls, file_path=None):
+		file_path = Path(file_path) if file_path is not None else load_dataset_local
+
+		print(f'\t\t \033[96m --- Loading Data --- \033[0m')
+
+		if file_path.exists():
+			return read_csv(file_path, parse_dates=['Time'], index_col='Time', na_values=('-', 'E', 'F'),
+							low_memory=False)
+		else:
+			use_default = input(
+				"The required file does not exist. Do you want to use default data? (yes/no): ").strip().lower()
+			if use_default == 'yes':
+				return load_dataset_local("Tunghai")
+			else:
+				raise FileNotFoundError("Required files are missing. Please process data to generate these files.")
+
+
+if __name__ == '__main__':
+	df = DataBase("Tunghai")

AeroViz/tools/dataclassifier.py

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+from datetime import datetime
+from typing import Literal, Sequence
+
+import pandas as pd
+from pandas import concat, DataFrame, Series
+
+
+class Classifier:
+	Seasons = {'2020-Summer': (datetime(2020, 9, 4), datetime(2020, 9, 21, 23)),
+			   '2020-Autumn': (datetime(2020, 9, 22), datetime(2020, 12, 29, 23)),
+			   '2020-Winter': (datetime(2020, 12, 30), datetime(2021, 3, 25, 23)),
+			   '2021-Spring': (datetime(2021, 3, 26), datetime(2021, 5, 6, 23))}
+
+	# '2021-Summer': (datetime(2021, 5, 7), datetime(2021, 10, 16, 23))
+	# '2021-Autumn': (datetime(2021, 10, 17), datetime(2021, 12, 31, 23))
+
+	@classmethod
+	def classify(cls, df) -> DataFrame:
+		df = cls.classify_by_diurnal(df)
+		df = cls.classify_by_state(df)
+		df = cls.classify_by_season(df)
+		df = cls.classify_by_season_state(df)
+
+		return df
+
+	@classmethod
+	def classify_by_diurnal(cls, df):
+		df['Hour'] = df.index.hour
+		df['Diurnal'] = df['Hour'].apply(cls.map_diurnal)
+		return df
+
+	@classmethod
+	def classify_by_state(cls, df):
+		df['State'] = df.apply(cls.map_state, axis=1, clean_bound=df.Extinction.quantile(0.2),
+							   event_bound=df.Extinction.quantile(0.8))
+		return df
+
+	@classmethod
+	def classify_by_season(cls, df):
+		for season, (season_start, season_end) in cls.Seasons.items():
+			df.loc[season_start:season_end, 'Season'] = season
+		return df
+
+	@classmethod
+	def classify_by_season_state(cls, df):
+		for _grp, _df in df.groupby('Season'):
+			df['Season_State'] = df.apply(cls.map_state, axis=1, clean_bound=_df.Extinction.quantile(0.2),
+										  event_bound=_df.Extinction.quantile(0.8))
+		return df
+
+	@staticmethod
+	def map_diurnal(hour):
+		return 'Day' if 7 <= hour <= 18 else 'Night'
+
+	@staticmethod
+	def map_state(row, clean_bound, event_bound):
+		return 'Event' if row['Extinction'] >= event_bound else 'Clean' if row[
+																			   'Extinction'] < clean_bound else 'Transition'
+
+
+class DataClassifier(Classifier):
+	"""
+	Notes
+	-----
+	First, create group then return the selected statistic method.
+	If the 'by' does not exist in DataFrame, import the default DataFrame to help to sign the different group.
+
+	"""
+
+	def __new__(cls,
+				df: DataFrame,
+				by: Literal["Hour", "State", "Season", "Season_state"] | str,
+				df_support: DataFrame | Series = None,
+				cut_bins: Sequence = None,
+				qcut: int = None,
+				labels: list[str] = None
+				) -> tuple[DataFrame, DataFrame]:
+		group = cls._group_data(df, by, df_support, cut_bins, qcut, labels)
+		return cls._compute_statistics(df, group)
+
+	@staticmethod
+	def _group_data(df, by, df_support, cut_bins, qcut, labels):
+		if by not in df.columns:
+			if df_support is None:
+				raise KeyError(f"Column '{by}' does not exist in DataFrame."
+							   f"Please provide a support DataFrame or Series to help classify.")
+			else:
+				df = concat([df, Classifier.classify(df_support.copy())[by]], axis=1)
+
+		if cut_bins is not None:
+			df[f'{by}_cut'] = pd.cut(df.loc[:, f'{by}'], cut_bins,
+									 labels=labels or (cut_bins + (cut_bins[1] - cut_bins[0]) / 2)[:-1])
+			return df.groupby(f'{by}_cut', observed=False)
+
+		elif qcut is not None:
+			df[f'{by}_qcut'] = pd.qcut(df.loc[:, f'{by}'], q=qcut, labels=labels)
+			return df.groupby(f'{by}_qcut', observed=False)
+
+		else:
+			if by == 'State':
+				return df.groupby(by)
+
+			elif by == 'Season':
+				return df.groupby(pd.Categorical(df['Season'], categories=['2020-Summer', '2020-Autumn', '2020-Winter',
+																		   '2021-Spring']), observed=False)
+			else:
+				return df.groupby(by, observed=False)
+
+	@staticmethod
+	def _compute_statistics(df, group):
+		mean_df = group.mean(numeric_only=True)
+		mean_df.loc['Total'] = df.mean(numeric_only=True)
+
+		std_df = group.std(numeric_only=True)
+		std_df.loc['Total'] = df.std(numeric_only=True)
+
+		return mean_df, std_df

AeroViz/tools/datareader.py

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+from abc import ABC, abstractmethod
+from pathlib import Path
+
+from pandas import read_csv, read_json, read_excel, DataFrame
+
+
+class FileHandler(ABC):
+	""" An abstract base class for reading data files with different extensions (.csv, .json, .xls, .xlsx). """
+
+	@abstractmethod
+	def read_data(self, file_path: Path) -> DataFrame:
+		pass
+
+
+class CsvFileHandler(FileHandler):
+	def read_data(self, file_path: Path) -> DataFrame:
+		return read_csv(file_path, na_values=('-', 'E', 'F', '#', '*'),
+						parse_dates=['Time'], index_col='Time', low_memory=False)
+
+
+class JsonFileHandler(FileHandler):
+	def read_data(self, file_path: Path) -> DataFrame:
+		return read_json(file_path)
+
+
+class ExcelFileHandler(FileHandler):
+	def read_data(self, file_path: Path) -> DataFrame:
+		return read_excel(file_path, parse_dates=['Time'])
+
+
+class DataReaderFactory:
+	_handler_mapping = {
+		'.csv': CsvFileHandler(),
+		'.json': JsonFileHandler(),
+		'.xls': ExcelFileHandler(),
+		'.xlsx': ExcelFileHandler(),
+	}
+
+	@staticmethod
+	def create_handler(file_extension: str) -> FileHandler:
+		reader_class = DataReaderFactory._handler_mapping.get(file_extension)
+		if reader_class is None:
+			raise ValueError(f"Unsupported file format: {file_extension}")
+		return reader_class
+
+
+class DataReader:
+	"""
+	A class for reading data files with different extensions (.csv, .json, .xls, .xlsx).
+
+	Parameters
+	----------
+		filename (Path | str): The name of the file to be read or the Path of the file.
+
+	Returns
+	-------
+		pandas.DataFrame: data
+
+	Examples
+	--------
+	>>> psd = DataReader(Path(...))
+	"""
+
+	def __new__(cls, file_path: Path | str) -> DataFrame:
+		file_path = Path(file_path)
+		return DataReaderFactory.create_handler(file_path.suffix.lower()).read_data(file_path)

AeroViz-0.1.0.dist-info/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2024 Chih-Yu Chan
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

AeroViz-0.1.0.dist-info/METADATA

@@ -0,0 +1,117 @@
+Metadata-Version: 2.1
+Name: AeroViz
+Version: 0.1.0
+Summary: Aerosol science
+Home-page: https://github.com/Alex870521/AeroViz
+Author: alex
+Author-email: alex870521@gmail.com
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: pandas
+Requires-Dist: numpy
+Requires-Dist: matplotlib
+Requires-Dist: seaborn
+Requires-Dist: scipy
+Requires-Dist: scikit-learn
+Requires-Dist: windrose
+Requires-Dist: tabulate
+
+## <div align="center">AeroViz for Aerosol Science</div>
+
+<p align="center">
+
+  <img alt="Static Badge" src="https://img.shields.io/badge/python-3.12-blue?logo=python">
+  <img alt="Static Badge" src="https://img.shields.io/badge/License-MIT-yellow">
+  <img alt="Static Badge" src="https://img.shields.io/badge/github-updating-red?logo=github">
+  <img src="https://img.shields.io/badge/testing-green?logo=Pytest&logoColor=blue">
+
+</p>
+
+<div align="center">
+
+<a href="https://github.com/Alex870521"><img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-social-github.png?raw=true" width="3%" alt="Alex870521 GitHub"></a>
+<img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-transparent.png?raw=true" width="3%">
+<a href="https://www.linkedin.com/in/Alex870521/"><img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-social-linkedin.png?raw=true" width="3%" alt="Alex870521 LinkedIn"></a>
+<img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-transparent.png?raw=true" width="3%">
+<a href="https://medium.com/@alex870521"><img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-social-medium.png?raw=true" width="3%" alt="Alex870521 Medium"></a>
+
+
+</div>
+
+## <div align="center">Supported Instruments</div>
+
+> [!NOTE]\
+> We are continuously working to support more instruments. Please check back for updates or contribute to our project on
+> GitHub.
+
+The AeroViz project currently supports data from the following instruments:
+
+- **SMPS (Scanning Mobility Particle Sizer)**
+- **APS (Aerodynamic Particle Sizer)**
+- **GRIMM (GRIMM Aerosol Technik)**
+- **TEOM (Continuous Ambient Particulate Monitor)**
+- **NEPH (Nephelometer)**
+- **Aurora (Nephelometer)**
+- **AE33 (Aethalometer Model 33)**
+- **AE43 (Aethalometer Model 43)**
+- **BC1054 (Black Carbon Monitor 1054)**
+- **MA350 (MicroAeth MA350)**
+- **OCEC (Organic Carbon Elemental Carbon Analyzer)**
+- **IGAC (In-situ Gas and Aerosol Compositions monitor)**
+- **VOC (Volatile Organic Compounds Monitor)**
+
+[//]: # (## <div align="center">Visual Example</div>)
+
+### <div align="center">WindRose and Conditional Bivariate Probability Function (CBPF)</div>
+
+> [!TIP]\
+> The provided code of WindRose and CBPF suitable for wind speed and wind direction data.
+
+![WindRose](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/windrose_CBPF.png?raw=true)
+
+## <div align="center">Particle Size Distribution</div>
+
+> [!IMPORTANT]\
+> The provided code of distribution suitable for SMPS and APS data in "dX/dlogdp" unit.
+> It can be converted into surface area and volume distribution. At the same time,
+> chemical composition data can also be used to calculate particle extinction through Mie theory.
+
+![PNSD](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/OverPSD.png?raw=true)
+
+## <div align="center">For some basic plot</div>
+
+|                                               **Three_dimension**                                               |                                              **Correlation Matrix**                                               |                                       **Mutiply Linear Regression**                                        |
+|:---------------------------------------------------------------------------------------------------------------:|:-----------------------------------------------------------------------------------------------------------------:|:----------------------------------------------------------------------------------------------------------:|
+|        ![PSD 3D](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/psd_3D.png?raw=true)         | ![Correlation Matrix](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/corr_matrix.png?raw=true) | ![IMPROVE MLR](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/IMPROVE_MLR.png?raw=true) |
+|                                                 **Pie & Donut**                                                 |                                                    **Dounts**                                                     |                                                **Scatter**                                                 |
+| ![IMPROVE donuts](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/IMPROVE_donut.png?raw=true) |   ![IMPROVE bar](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/IMPROVE_donuts.png?raw=true)   |     ![scatter](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/scatter.png?raw=true)     |
+
+## <div align="center">PyMieScatt</div>
+
+|                                           **Mie_Q**                                            |                                            **Mie_MEE**                                             |
+|:----------------------------------------------------------------------------------------------:|:--------------------------------------------------------------------------------------------------:|
+| ![Mie Q](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/Mie_Q.png?raw=true) | ![Mie MEE](https://github.com/Alex870521/assets_repo/blob/main/assets/figure/Mie_MEE.png?raw=true) |     |
+
+## <div align="center">Related Dependencies</div>
+
+* [PyMieScatt](https://github.com/bsumlin/PyMieScatt.git)
+* [py-smps](https://github.com/quant-aq/py-smps.git)
+
+## <div align="center">Contact</div>
+
+For bug reports and feature requests please visit [GitHub Issues](https://github.com/Alex870521/DataPlot/issues).
+
+<div align="center">
+
+<a href="https://github.com/Alex870521"><img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-social-github.png?raw=true" width="3%" alt="Alex870521 GitHub"></a>
+<img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-transparent.png?raw=true" width="3%">
+<a href="https://www.linkedin.com/in/Alex870521/"><img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-social-linkedin.png?raw=true" width="3%" alt="Alex870521 LinkedIn"></a>
+<img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-transparent.png?raw=true" width="3%">
+<a href="https://medium.com/@alex870521"><img src="https://github.com/Alex870521/assets_repo/blob/main/assets/media/logo-social-medium.png?raw=true" width="3%" alt="Alex870521 Medium"></a>
+
+
+</div>

AeroViz-0.1.0.dist-info/RECORD

@@ -0,0 +1,102 @@
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