wizz-method 1.0.0

package/tools/installer/core/installer.js

@@ -0,0 +1,1653 @@
+const path = require('node:path');
+const fs = require('../fs-native');
+const { Manifest } = require('./manifest');
+const { OfficialModules } = require('../modules/official-modules');
+const { IdeManager } = require('../ide/manager');
+const { FileOps } = require('../file-ops');
+const { Config } = require('./config');
+const { getProjectRoot, getSourcePath } = require('../project-root');
+const { ManifestGenerator } = require('./manifest-generator');
+const prompts = require('../prompts');
+const { BMAD_FOLDER_NAME } = require('../ide/shared/path-utils');
+const { InstallPaths } = require('./install-paths');
+const { ExternalModuleManager } = require('../modules/external-manager');
+const { resolveModuleVersion } = require('../modules/version-resolver');
+const { MODULE_HELP_CSV_HEADER } = require('../modules/module-help-schema');
+
+const { ExistingInstall } = require('./existing-install');
+const { warnPreNativeSkillsLegacy } = require('./legacy-warnings');
+
+class Installer {
+  constructor() {
+    this.externalModuleManager = new ExternalModuleManager();
+    this.manifest = new Manifest();
+    this.ideManager = new IdeManager();
+    this.fileOps = new FileOps();
+    this.installedFiles = new Set(); // Track all installed files
+    this.bmadFolderName = BMAD_FOLDER_NAME;
+  }
+
+  /**
+   * Main installation method
+   * @param {Object} config - Installation configuration
+   * @param {string} config.directory - Target directory
+   * @param {string[]} config.modules - Modules to install (including 'core')
+   * @param {string[]} config.ides - IDEs to configure
+   */
+  async install(originalConfig) {
+    let updateState = null;
+
+    try {
+      const config = Config.build(originalConfig);
+      const paths = await InstallPaths.create(config);
+      const officialModules = await OfficialModules.build(config, paths);
+      const existingInstall = await ExistingInstall.detect(paths.bmadDir);
+
+      try {
+        await warnPreNativeSkillsLegacy({
+          projectRoot: paths.projectRoot,
+          existingVersion: existingInstall.installed ? existingInstall.version : null,
+        });
+      } catch (error) {
+        // Legacy-dir scan is informational; never let it abort install.
+        await prompts.log.warn(`Warning: Could not check for legacy BMAD entries: ${error.message}`);
+      }
+
+      if (existingInstall.installed) {
+        await this._removeDeselectedModules(existingInstall, config, paths, originalConfig._preserveModules || []);
+        updateState = await this._prepareUpdateState(paths, config, existingInstall, officialModules);
+        await this._removeDeselectedIdes(existingInstall, config, paths);
+      }
+
+      await this._validateIdeSelection(config);
+
+      // Capture pre-install module versions for from→to display
+      const preInstallVersions = new Map();
+      if (existingInstall.installed) {
+        const existingModules = await this.manifest.getAllModuleVersions(paths.bmadDir);
+        for (const mod of existingModules) {
+          if (mod.name && mod.version) {
+            preInstallVersions.set(mod.name, mod.version);
+          }
+        }
+      }
+
+      // Results collector for consolidated summary
+      const results = [];
+      const addResult = (step, status, detail = '', meta = {}) => results.push({ step, status, detail, ...meta });
+
+      // Capture previously installed skill rows before they get overwritten
+      const preservedModules = originalConfig._preserveModules || [];
+      const previousSkillManifestRows = await this._readSkillManifestRows(paths.bmadDir);
+      const previousSkillIds = this._getPreviousSkillIdsForCleanup(previousSkillManifestRows, preservedModules);
+
+      const allModules = config.modules || [];
+
+      await this._installAndConfigure(
+        config,
+        originalConfig,
+        paths,
+        allModules,
+        allModules,
+        addResult,
+        officialModules,
+        previousSkillManifestRows,
+      );
+
+      await this._setupIdes(config, allModules, paths, addResult, previousSkillIds);
+
+      // Skills are now in IDE directories — remove redundant copies from _bmad/.
+      // Also cleans up skill dirs left by older installer versions.
+      await this._cleanupSkillDirs(paths.bmadDir);
+
+      const restoreResult = await this._restoreUserFiles(paths, updateState);
+
+      // Render consolidated summary
+      await this.renderInstallSummary(results, {
+        bmadDir: paths.bmadDir,
+        modules: config.modules,
+        ides: config.ides,
+        customFiles: restoreResult.customFiles.length > 0 ? restoreResult.customFiles : undefined,
+        modifiedFiles: restoreResult.modifiedFiles.length > 0 ? restoreResult.modifiedFiles : undefined,
+        preInstallVersions,
+      });
+
+      return {
+        success: true,
+        path: paths.bmadDir,
+        modules: config.modules,
+        ides: config.ides,
+        projectDir: paths.projectRoot,
+      };
+    } catch (error) {
+      await prompts.log.error('Installation failed');
+
+      // Clean up any temp backup directories that were created before the failure
+      try {
+        if (updateState?.tempBackupDir && (await fs.pathExists(updateState.tempBackupDir))) {
+          await fs.remove(updateState.tempBackupDir);
+        }
+        if (updateState?.tempModifiedBackupDir && (await fs.pathExists(updateState.tempModifiedBackupDir))) {
+          await fs.remove(updateState.tempModifiedBackupDir);
+        }
+      } catch {
+        // Best-effort cleanup — don't mask the original error
+      }
+
+      throw error;
+    }
+  }
+
+  /**
+   * Remove modules that were previously installed but are no longer selected.
+   * No confirmation — the user's module selection is the decision.
+   */
+  async _removeDeselectedModules(existingInstall, config, paths, preservedModules = []) {
+    const previouslyInstalled = new Set(existingInstall.moduleIds);
+    const newlySelected = new Set(config.modules || []);
+    const preserved = new Set(preservedModules);
+    const toRemove = [...previouslyInstalled].filter((m) => !newlySelected.has(m) && m !== 'core' && !preserved.has(m));
+
+    for (const moduleId of toRemove) {
+      const modulePath = paths.moduleDir(moduleId);
+      try {
+        if (await fs.pathExists(modulePath)) {
+          await fs.remove(modulePath);
+        }
+      } catch (error) {
+        await prompts.log.warn(`Warning: Failed to remove ${moduleId}: ${error.message}`);
+      }
+    }
+  }
+
+  /**
+   * Fail fast if all selected IDEs are suspended.
+   */
+  async _validateIdeSelection(config) {
+    if (!config.ides || config.ides.length === 0) return;
+
+    await this.ideManager.ensureInitialized();
+    const suspendedIdes = config.ides.filter((ide) => {
+      const handler = this.ideManager.handlers.get(ide);
+      return handler?.platformConfig?.suspended;
+    });
+
+    if (suspendedIdes.length > 0 && suspendedIdes.length === config.ides.length) {
+      for (const ide of suspendedIdes) {
+        const handler = this.ideManager.handlers.get(ide);
+        await prompts.log.error(`${handler.displayName || ide}: ${handler.platformConfig.suspended}`);
+      }
+      throw new Error(
+        `All selected tool(s) are suspended: ${suspendedIdes.join(', ')}. Installation aborted to prevent upgrading _bmad/ without a working IDE configuration.`,
+      );
+    }
+  }
+
+  /**
+   * Remove IDEs that were previously installed but are no longer selected.
+   * No confirmation — the user's IDE selection is the decision.
+   */
+  async _removeDeselectedIdes(existingInstall, config, paths) {
+    const previouslyInstalled = new Set(existingInstall.ides);
+    const newlySelected = new Set(config.ides || []);
+    const toRemove = [...previouslyInstalled].filter((ide) => !newlySelected.has(ide));
+
+    if (toRemove.length === 0) return;
+
+    // Pass the newly-selected list as remainingIdes so cleanupByList skips
+    // target_dir wipes for IDEs whose directory is still owned by a peer
+    // (e.g. removing 'cursor' while 'gemini' remains — both share .agents/skills).
+    const results = await this.ideManager.cleanupByList(paths.projectRoot, toRemove, {
+      remainingIdes: [...newlySelected],
+    });
+
+    for (const result of results || []) {
+      if (result && result.success === false) {
+        await prompts.log.warn(`Warning: Failed to remove ${result.ide}: ${result.error || 'unknown error'}`);
+      }
+    }
+  }
+
+  /**
+   * Install modules, create directories, generate configs and manifests.
+   */
+  async _installAndConfigure(
+    config,
+    originalConfig,
+    paths,
+    officialModuleIds,
+    allModules,
+    addResult,
+    officialModules,
+    previousSkillManifestRows = [],
+  ) {
+    const isQuickUpdate = config.isQuickUpdate();
+    const moduleConfigs = officialModules.moduleConfigs;
+
+    const dirResults = { createdDirs: [], movedDirs: [], createdWdsFolders: [] };
+
+    const installTasks = [];
+
+    installTasks.push({
+      title: 'Installing shared scripts',
+      task: async () => {
+        await this._installSharedScripts(paths);
+        addResult('Shared scripts', 'ok');
+        return 'Shared scripts installed';
+      },
+    });
+
+    if (allModules.length > 0) {
+      installTasks.push({
+        title: isQuickUpdate ? `Updating ${allModules.length} module(s)` : `Installing ${allModules.length} module(s)`,
+        task: async (message) => {
+          const installedModuleNames = new Set();
+
+          await this._installOfficialModules(config, paths, officialModuleIds, addResult, isQuickUpdate, officialModules, {
+            message,
+            installedModuleNames,
+          });
+
+          return `${allModules.length} module(s) ${isQuickUpdate ? 'updated' : 'installed'}`;
+        },
+      });
+    }
+
+    installTasks.push({
+      title: 'Creating module directories',
+      task: async (message) => {
+        const verboseMode = process.env.BMAD_VERBOSE_INSTALL === 'true' || config.verbose;
+        const moduleLogger = {
+          log: async (msg) => (verboseMode ? await prompts.log.message(msg) : undefined),
+          error: async (msg) => await prompts.log.error(msg),
+          warn: async (msg) => await prompts.log.warn(msg),
+        };
+
+        if (config.modules && config.modules.length > 0) {
+          for (const moduleName of config.modules) {
+            message(`Setting up ${moduleName}...`);
+            const result = await officialModules.createModuleDirectories(moduleName, paths.bmadDir, {
+              installedIDEs: config.ides || [],
+              moduleConfig: moduleConfigs[moduleName] || {},
+              existingModuleConfig: officialModules.existingConfig?.[moduleName] || {},
+              coreConfig: moduleConfigs.core || {},
+              logger: moduleLogger,
+              silent: true,
+            });
+            if (result) {
+              dirResults.createdDirs.push(...result.createdDirs);
+              dirResults.movedDirs.push(...(result.movedDirs || []));
+              dirResults.createdWdsFolders.push(...result.createdWdsFolders);
+            }
+          }
+        }
+
+        addResult('Module directories', 'ok');
+        return 'Module directories created';
+      },
+    });
+
+    const configTask = {
+      title: 'Generating configurations',
+      task: async (message) => {
+        await this.generateModuleConfigs(paths.bmadDir, moduleConfigs);
+        addResult('Configurations', 'ok', 'generated');
+
+        this.installedFiles.add(paths.manifestFile());
+        this.installedFiles.add(paths.centralConfig());
+        this.installedFiles.add(paths.centralUserConfig());
+
+        message('Generating manifests...');
+        const manifestGen = new ManifestGenerator();
+        const preservedModules = originalConfig._preserveModules || [];
+
+        const allModulesForManifest = config.isQuickUpdate()
+          ? originalConfig._existingModules || allModules || []
+          : preservedModules.length > 0
+            ? [...allModules, ...preservedModules]
+            : allModules || [];
+
+        let modulesForCsvPreserve;
+        if (config.isQuickUpdate()) {
+          modulesForCsvPreserve = originalConfig._existingModules || allModules || [];
+        } else {
+          modulesForCsvPreserve = preservedModules.length > 0 ? [...allModules, ...preservedModules] : allModules;
+        }
+
+        await this._trackPreservedModuleFiles(paths.bmadDir, preservedModules);
+
+        await manifestGen.generateManifests(paths.bmadDir, allModulesForManifest, [...this.installedFiles], {
+          ides: config.ides || [],
+          preservedModules: modulesForCsvPreserve,
+          moduleConfigs,
+        });
+        await this._appendPreservedSkillManifestRows(paths.bmadDir, previousSkillManifestRows, preservedModules);
+
+        // Apply post-install --set TOML patches. Runs after writeCentralConfig
+        // (inside generateManifests above) so the patch operates on the
+        // freshly written `_bmad/config.toml` / `_bmad/config.user.toml`.
+        // See `tools/installer/set-overrides.js` for routing rules.
+        if (config.setOverrides && Object.keys(config.setOverrides).length > 0) {
+          const { applySetOverrides } = require('../set-overrides');
+          const applied = await applySetOverrides(config.setOverrides, paths.bmadDir);
+          if (applied.length > 0) {
+            const summary = applied.map((a) => `${a.module}.${a.key} → ${a.file}`).join(', ');
+            await prompts.log.info(`Applied --set overrides: ${summary}`);
+          }
+        }
+
+        message('Generating help catalog...');
+        await this.mergeModuleHelpCatalogs(paths.bmadDir, manifestGen.agents);
+        addResult('Help catalog', 'ok');
+
+        return 'Configurations generated';
+      },
+    };
+    installTasks.push(configTask);
+
+    // Run install + dirs first, then render dir output, then run config generation
+    const mainTasks = installTasks.filter((t) => t !== configTask);
+    await prompts.tasks(mainTasks);
+
+    const color = await prompts.getColor();
+    if (dirResults.movedDirs.length > 0) {
+      const lines = dirResults.movedDirs.map((d) => `  ${d}`).join('\n');
+      await prompts.log.message(color.cyan(`Moved directories:\n${lines}`));
+    }
+    if (dirResults.createdDirs.length > 0) {
+      const lines = dirResults.createdDirs.map((d) => `  ${d}`).join('\n');
+      await prompts.log.message(color.yellow(`Created directories:\n${lines}`));
+    }
+    if (dirResults.createdWdsFolders.length > 0) {
+      const lines = dirResults.createdWdsFolders.map((f) => color.dim(`  \u2713 ${f}/`)).join('\n');
+      await prompts.log.message(color.cyan(`Created WDS folder structure:\n${lines}`));
+    }
+
+    await prompts.tasks([configTask]);
+  }
+
+  /**
+   * Set up IDE integrations for each selected IDE.
+   */
+  async _setupIdes(config, allModules, paths, addResult, previousSkillIds = new Set()) {
+    if (config.skipIde || !config.ides || config.ides.length === 0) return;
+
+    await this.ideManager.ensureInitialized();
+    const validIdes = config.ides.filter((ide) => ide && typeof ide === 'string');
+
+    if (validIdes.length === 0) {
+      addResult('IDE configuration', 'warn', 'no valid IDEs selected');
+      return;
+    }
+
+    const setupResults = await this.ideManager.setupBatch(validIdes, paths.projectRoot, paths.bmadDir, {
+      selectedModules: allModules || [],
+      verbose: config.verbose,
+      previousSkillIds,
+    });
+
+    for (const setupResult of setupResults) {
+      const ide = setupResult.ide;
+      if (setupResult.success) {
+        addResult(ide, 'ok', setupResult.detail || '');
+      } else {
+        addResult(ide, 'error', setupResult.error || 'failed');
+      }
+    }
+  }
+
+  /**
+   * Remove skill directories from _bmad/ after IDE installation.
+   * Skills are self-contained in IDE directories, so _bmad/ only needs
+   * module-level files (config.yaml, _config/, etc.).
+   * Also cleans up skill dirs left by older installer versions.
+   * @param {string} bmadDir - BMAD installation directory
+   */
+  async _cleanupSkillDirs(bmadDir) {
+    const csv = require('csv-parse/sync');
+    const csvPath = path.join(bmadDir, '_config', 'skill-manifest.csv');
+    if (!(await fs.pathExists(csvPath))) return;
+
+    const csvContent = await fs.readFile(csvPath, 'utf8');
+    const records = csv.parse(csvContent, { columns: true, skip_empty_lines: true });
+    const bmadFolderName = path.basename(bmadDir);
+    const bmadPrefix = bmadFolderName + '/';
+
+    for (const record of records) {
+      if (!record.path) continue;
+      const relativePath = record.path.startsWith(bmadPrefix) ? record.path.slice(bmadPrefix.length) : record.path;
+      const sourceDir = path.dirname(path.join(bmadDir, relativePath));
+      if (await fs.pathExists(sourceDir)) {
+        await fs.remove(sourceDir);
+        await this._removeEmptyParents(path.dirname(sourceDir), bmadDir);
+      }
+    }
+  }
+
+  /**
+   * Remove now-empty parent directories left behind after skill dir cleanup.
+   * Walks up from dir, stopping at (and never removing) bmadDir. Best-effort:
+   * a directory that vanishes or fills in mid-walk just ends the walk.
+   * @param {string} dir - Directory to start walking up from
+   * @param {string} bmadDir - BMAD installation directory (boundary)
+   */
+  async _removeEmptyParents(dir, bmadDir) {
+    let current = dir;
+    while (true) {
+      // Path-boundary check (not a string prefix, so siblings like _bmad2 don't match).
+      const rel = path.relative(bmadDir, current);
+      if (rel === '' || rel.startsWith('..') || path.isAbsolute(rel)) break;
+      try {
+        const entries = await fs.readdir(current);
+        if (entries.length > 0) break;
+        await fs.rmdir(current);
+      } catch {
+        break;
+      }
+      current = path.dirname(current);
+    }
+  }
+
+  async _readSkillManifestRows(bmadDir) {
+    const csvPath = path.join(bmadDir, '_config', 'skill-manifest.csv');
+    if (!(await fs.pathExists(csvPath))) return [];
+
+    try {
+      const csvParse = require('csv-parse/sync');
+      const content = await fs.readFile(csvPath, 'utf8');
+      return csvParse.parse(content, { columns: true, skip_empty_lines: true });
+    } catch (error) {
+      await prompts.log.warn(`Failed to parse skill-manifest.csv: ${error.message}`);
+      return [];
+    }
+  }
+
+  _getPreviousSkillIdsForCleanup(previousRows, preservedModules = []) {
+    const preservedModuleSet = new Set(preservedModules || []);
+    const ids = new Set();
+    for (const row of previousRows || []) {
+      if (row.canonicalId && !preservedModuleSet.has(row.module)) {
+        ids.add(row.canonicalId);
+      }
+    }
+    return ids;
+  }
+
+  async _appendPreservedSkillManifestRows(bmadDir, previousRows, preservedModules = []) {
+    if (!previousRows || previousRows.length === 0 || preservedModules.length === 0) return;
+
+    const preservedModuleSet = new Set(preservedModules);
+    const rowsToPreserve = previousRows.filter((row) => row.canonicalId && row.module && preservedModuleSet.has(row.module));
+    if (rowsToPreserve.length === 0) return;
+
+    const csvPath = path.join(bmadDir, '_config', 'skill-manifest.csv');
+    if (!(await fs.pathExists(csvPath))) return;
+
+    const currentRows = await this._readSkillManifestRows(bmadDir);
+    const activeIds = new Set(currentRows.map((row) => row.canonicalId).filter(Boolean));
+    const appendedRows = [];
+
+    for (const row of rowsToPreserve) {
+      if (activeIds.has(row.canonicalId)) continue;
+      activeIds.add(row.canonicalId);
+      appendedRows.push(
+        [row.canonicalId, row.name || row.canonicalId, row.description || '', row.module, row.path || '']
+          .map((field) => this.escapeCSVField(field))
+          .join(','),
+      );
+    }
+
+    if (appendedRows.length === 0) return;
+
+    const currentContent = await fs.readFile(csvPath, 'utf8');
+    const prefix = currentContent.endsWith('\n') ? currentContent : `${currentContent}\n`;
+    await fs.writeFile(csvPath, prefix + appendedRows.join('\n') + '\n', 'utf8');
+  }
+
+  /**
+   * Restore custom and modified files that were backed up before the update.
+   * No-op for fresh installs (updateState is null).
+   * @param {Object} paths - InstallPaths instance
+   * @param {Object|null} updateState - From _prepareUpdateState, or null for fresh installs
+   * @returns {Object} { customFiles, modifiedFiles } — lists of restored files
+   */
+  async _restoreUserFiles(paths, updateState) {
+    const noFiles = { customFiles: [], modifiedFiles: [] };
+
+    if (!updateState || (updateState.customFiles.length === 0 && updateState.modifiedFiles.length === 0)) {
+      return noFiles;
+    }
+
+    let restoredCustomFiles = [];
+    let restoredModifiedFiles = [];
+
+    await prompts.tasks([
+      {
+        title: 'Finalizing installation',
+        task: async (message) => {
+          if (updateState.customFiles.length > 0) {
+            message(`Restoring ${updateState.customFiles.length} custom files...`);
+
+            for (const originalPath of updateState.customFiles) {
+              const relativePath = path.relative(paths.bmadDir, originalPath);
+              const backupPath = path.join(updateState.tempBackupDir, relativePath);
+
+              if (await fs.pathExists(backupPath)) {
+                await fs.ensureDir(path.dirname(originalPath));
+                await fs.copy(backupPath, originalPath, { overwrite: true });
+              }
+            }
+
+            if (updateState.tempBackupDir && (await fs.pathExists(updateState.tempBackupDir))) {
+              await fs.remove(updateState.tempBackupDir);
+            }
+
+            restoredCustomFiles = updateState.customFiles;
+          }
+
+          if (updateState.modifiedFiles.length > 0) {
+            restoredModifiedFiles = updateState.modifiedFiles;
+
+            if (updateState.tempModifiedBackupDir && (await fs.pathExists(updateState.tempModifiedBackupDir))) {
+              message(`Restoring ${restoredModifiedFiles.length} modified files as .bak...`);
+
+              for (const modifiedFile of restoredModifiedFiles) {
+                const relativePath = path.relative(paths.bmadDir, modifiedFile.path);
+                const tempBackupPath = path.join(updateState.tempModifiedBackupDir, relativePath);
+                const bakPath = modifiedFile.path + '.bak';
+
+                if (await fs.pathExists(tempBackupPath)) {
+                  await fs.ensureDir(path.dirname(bakPath));
+                  await fs.copy(tempBackupPath, bakPath, { overwrite: true });
+                }
+              }
+
+              await fs.remove(updateState.tempModifiedBackupDir);
+            }
+          }
+
+          return 'Installation finalized';
+        },
+      },
+    ]);
+
+    return { customFiles: restoredCustomFiles, modifiedFiles: restoredModifiedFiles };
+  }
+
+  /**
+   * Common update preparation: detect files, preserve core config, back up.
+   * @param {Object} paths - InstallPaths instance
+   * @param {Object} config - Clean config (may have coreConfig updated)
+   * @param {Object} existingInstall - Detection result
+   * @param {Object} officialModules - OfficialModules instance
+   * @returns {Object} Update state: { customFiles, modifiedFiles, tempBackupDir, tempModifiedBackupDir }
+   */
+  async _prepareUpdateState(paths, config, existingInstall, officialModules) {
+    // Detect custom and modified files BEFORE updating (compare current files vs files-manifest.csv)
+    const existingFilesManifest = await this.readFilesManifest(paths.bmadDir);
+    const { customFiles, modifiedFiles } = await this.detectCustomFiles(paths.bmadDir, existingFilesManifest);
+
+    // Preserve existing core configuration during updates
+    // (no-op for quick-update which already has core config from collectModuleConfigQuick)
+    const coreConfigPath = paths.moduleConfig('core');
+    if ((await fs.pathExists(coreConfigPath)) && (!config.coreConfig || Object.keys(config.coreConfig).length === 0)) {
+      try {
+        const yaml = require('yaml');
+        const coreConfigContent = await fs.readFile(coreConfigPath, 'utf8');
+        const existingCoreConfig = yaml.parse(coreConfigContent);
+
+        config.coreConfig = existingCoreConfig;
+        officialModules.moduleConfigs.core = existingCoreConfig;
+      } catch (error) {
+        await prompts.log.warn(`Warning: Could not read existing core config: ${error.message}`);
+      }
+    }
+
+    const backupDirs = await this._backupUserFiles(paths, customFiles, modifiedFiles);
+
+    return {
+      customFiles,
+      modifiedFiles,
+      tempBackupDir: backupDirs.tempBackupDir,
+      tempModifiedBackupDir: backupDirs.tempModifiedBackupDir,
+    };
+  }
+
+  /**
+   * Back up custom and modified files to temp directories before overwriting.
+   * Returns the temp directory paths (or undefined if no files to back up).
+   * @param {Object} paths - InstallPaths instance
+   * @param {string[]} customFiles - Absolute paths of custom (user-added) files
+   * @param {Object[]} modifiedFiles - Array of { path, relativePath } for modified files
+   * @returns {Object} { tempBackupDir, tempModifiedBackupDir } — undefined if no files
+   */
+  async _backupUserFiles(paths, customFiles, modifiedFiles) {
+    let tempBackupDir;
+    let tempModifiedBackupDir;
+
+    if (customFiles.length > 0) {
+      tempBackupDir = path.join(paths.projectRoot, '_bmad-custom-backup-temp');
+      await fs.ensureDir(tempBackupDir);
+
+      for (const customFile of customFiles) {
+        const relativePath = path.relative(paths.bmadDir, customFile);
+        const backupPath = path.join(tempBackupDir, relativePath);
+        await fs.ensureDir(path.dirname(backupPath));
+        await fs.copy(customFile, backupPath);
+      }
+    }
+
+    if (modifiedFiles.length > 0) {
+      tempModifiedBackupDir = path.join(paths.projectRoot, '_bmad-modified-backup-temp');
+      await fs.ensureDir(tempModifiedBackupDir);
+
+      for (const modifiedFile of modifiedFiles) {
+        const relativePath = path.relative(paths.bmadDir, modifiedFile.path);
+        const tempBackupPath = path.join(tempModifiedBackupDir, relativePath);
+        await fs.ensureDir(path.dirname(tempBackupPath));
+        await fs.copy(modifiedFile.path, tempBackupPath, { overwrite: true });
+      }
+    }
+
+    return { tempBackupDir, tempModifiedBackupDir };
+  }
+
+  /**
+   * Sync src/scripts/* → _bmad/scripts/ so shared Python scripts
+   * (e.g. resolve_customization.py) are available at install time.
+   * Excludes dev-only tests and Python caches so they don't ship to users.
+   * Wipes the destination first so files removed or renamed in source
+   * don't linger and get recorded as installed. Also seeds
+   * _bmad/custom/.gitignore on fresh installs so *.user.toml overrides
+   * stay out of version control.
+   */
+  async _installSharedScripts(paths) {
+    const srcScriptsDir = path.join(paths.srcDir, 'src', 'scripts');
+    if (!(await fs.pathExists(srcScriptsDir))) {
+      throw new Error(`Shared scripts source directory not found: ${srcScriptsDir}`);
+    }
+
+    await fs.remove(paths.scriptsDir);
+    await fs.ensureDir(paths.scriptsDir);
+    // Ship only the runtime scripts — dev-only tests and Python caches must not land in user projects.
+    const isInstallable = (srcPath) => {
+      const base = path.basename(srcPath);
+      return base !== 'tests' && base !== '__pycache__' && base !== '.pytest_cache' && !base.endsWith('.pyc');
+    };
+    await fs.copy(srcScriptsDir, paths.scriptsDir, { overwrite: true, filter: isInstallable });
+    await this._trackFilesRecursive(paths.scriptsDir);
+
+    const customGitignore = path.join(paths.customDir, '.gitignore');
+    if (!(await fs.pathExists(customGitignore))) {
+      await fs.writeFile(customGitignore, '*.user.toml\n', 'utf8');
+      this.installedFiles.add(customGitignore);
+    }
+  }
+
+  async _trackFilesRecursive(dir) {
+    const entries = await fs.readdir(dir, { withFileTypes: true });
+    for (const entry of entries) {
+      const full = path.join(dir, entry.name);
+      if (entry.isDirectory()) {
+        await this._trackFilesRecursive(full);
+      } else if (entry.isFile()) {
+        this.installedFiles.add(full);
+      }
+    }
+  }
+
+  async _trackPreservedModuleFiles(bmadDir, preservedModules = []) {
+    for (const moduleName of preservedModules) {
+      const modulePath = path.join(bmadDir, moduleName);
+      if (await fs.pathExists(modulePath)) {
+        await this._trackFilesRecursive(modulePath);
+      }
+    }
+  }
+
+  /**
+   * Install official (non-custom) modules.
+   * @param {Object} config - Installation configuration
+   * @param {Object} paths - InstallPaths instance
+   * @param {string[]} officialModuleIds - Official module IDs to install
+   * @param {Function} addResult - Callback to record installation results
+   * @param {boolean} isQuickUpdate - Whether this is a quick update
+   * @param {Object} ctx - Shared context: { message, installedModuleNames }
+   */
+  async _installOfficialModules(config, paths, officialModuleIds, addResult, isQuickUpdate, officialModules, ctx) {
+    const { message, installedModuleNames } = ctx;
+    const { CustomModuleManager } = require('../modules/custom-module-manager');
+
+    for (const moduleName of officialModuleIds) {
+      if (installedModuleNames.has(moduleName)) continue;
+      installedModuleNames.add(moduleName);
+
+      message(`${isQuickUpdate ? 'Updating' : 'Installing'} ${moduleName}...`);
+
+      const moduleConfig = officialModules.moduleConfigs[moduleName] || {};
+      const installResult = await officialModules.install(
+        moduleName,
+        paths.bmadDir,
+        (filePath) => {
+          this.installedFiles.add(filePath);
+        },
+        {
+          skipModuleInstaller: true,
+          moduleConfig: moduleConfig,
+          installer: this,
+          silent: true,
+          channelOptions: config.channelOptions,
+        },
+      );
+
+      // Get display name from source module.yaml and resolve the freshest version metadata we can find locally.
+      const sourcePath = await officialModules.findModuleSource(moduleName, {
+        silent: true,
+        channelOptions: config.channelOptions,
+      });
+      const moduleInfo = sourcePath ? await officialModules.getModuleInfo(sourcePath, moduleName, '') : null;
+      const displayName = moduleInfo?.name || moduleName;
+
+      const resolution = officialModules.externalModuleManager.getResolution(moduleName);
+      const cachedResolution = CustomModuleManager._resolutionCache.get(moduleName);
+      const versionInfo = await resolveModuleVersion(moduleName, {
+        moduleSourcePath: sourcePath,
+        fallbackVersion: resolution?.version || cachedResolution?.version,
+        marketplacePluginNames: cachedResolution?.pluginName ? [cachedResolution.pluginName] : [],
+      });
+      // Prefer the git tag recorded by the resolution (e.g. "v1.7.0") over
+      // the on-disk package.json (which may be ahead of the released tag).
+      const version = resolution?.version || versionInfo.version || '';
+      addResult(displayName, 'ok', '', {
+        moduleCode: moduleName,
+        newVersion: version,
+        newChannel: resolution?.channel || null,
+        newSha: resolution?.sha || null,
+      });
+    }
+  }
+
+  /**
+   * Read files-manifest.csv
+   * @param {string} bmadDir - BMAD installation directory
+   * @returns {Array} Array of file entries from files-manifest.csv
+   */
+  async readFilesManifest(bmadDir) {
+    const filesManifestPath = path.join(bmadDir, '_config', 'files-manifest.csv');
+    if (!(await fs.pathExists(filesManifestPath))) {
+      return [];
+    }
+
+    try {
+      const content = await fs.readFile(filesManifestPath, 'utf8');
+      const lines = content.split('\n');
+      const files = [];
+
+      for (let i = 1; i < lines.length; i++) {
+        // Skip header
+        const line = lines[i].trim();
+        if (!line) continue;
+
+        // Parse CSV line properly handling quoted values
+        const parts = [];
+        let current = '';
+        let inQuotes = false;
+
+        for (const char of line) {
+          if (char === '"') {
+            inQuotes = !inQuotes;
+          } else if (char === ',' && !inQuotes) {
+            parts.push(current);
+            current = '';
+          } else {
+            current += char;
+          }
+        }
+        parts.push(current); // Add last part
+
+        if (parts.length >= 4) {
+          files.push({
+            type: parts[0],
+            name: parts[1],
+            module: parts[2],
+            path: parts[3],
+            hash: parts[4] || null, // Hash may not exist in old manifests
+          });
+        }
+      }
+
+      return files;
+    } catch (error) {
+      await prompts.log.warn('Could not read files-manifest.csv: ' + error.message);
+      return [];
+    }
+  }
+
+  /**
+   * Detect custom and modified files
+   * @param {string} bmadDir - BMAD installation directory
+   * @param {Array} existingFilesManifest - Previous files from files-manifest.csv
+   * @returns {Object} Object with customFiles and modifiedFiles arrays
+   */
+  async detectCustomFiles(bmadDir, existingFilesManifest) {
+    const customFiles = [];
+    const modifiedFiles = [];
+
+    // Memory subtrees (v6.1: _bmad/_memory, current: _bmad/memory) hold
+    // per-user runtime data generated by agents with sidecars. These files
+    // aren't installer-managed and must never be reported as "custom" or
+    // "modified" — they're user state, not user overrides.
+    const bmadMemoryPaths = ['_memory', 'memory'];
+
+    // Check if the manifest has hashes - if not, we can't detect modifications
+    let manifestHasHashes = false;
+    if (existingFilesManifest && existingFilesManifest.length > 0) {
+      manifestHasHashes = existingFilesManifest.some((f) => f.hash);
+    }
+
+    // Build map of previously installed files from files-manifest.csv with their hashes
+    const installedFilesMap = new Map();
+    for (const fileEntry of existingFilesManifest) {
+      if (fileEntry.path) {
+        const absolutePath = path.join(bmadDir, fileEntry.path);
+        installedFilesMap.set(path.normalize(absolutePath), {
+          hash: fileEntry.hash,
+          relativePath: fileEntry.path,
+        });
+      }
+    }
+
+    // Recursively scan bmadDir for all files
+    const scanDirectory = async (dir) => {
+      try {
+        const entries = await fs.readdir(dir, { withFileTypes: true });
+        for (const entry of entries) {
+          const fullPath = path.join(dir, entry.name);
+
+          if (entry.isDirectory()) {
+            // Skip certain directories
+            if (entry.name === 'node_modules' || entry.name === '.git') {
+              continue;
+            }
+            await scanDirectory(fullPath);
+          } else if (entry.isFile()) {
+            const normalizedPath = path.normalize(fullPath);
+            const fileInfo = installedFilesMap.get(normalizedPath);
+
+            // Skip certain system files that are auto-generated
+            const relativePath = path.relative(bmadDir, fullPath);
+            const fileName = path.basename(fullPath);
+
+            // Skip _config directory EXCEPT for modified agent customizations
+            if (relativePath.startsWith('_config/') || relativePath.startsWith('_config\\')) {
+              // Special handling for .customize.yaml files - only preserve if modified
+              if (relativePath.includes('/agents/') && fileName.endsWith('.customize.yaml')) {
+                // Check if the customization file has been modified from manifest
+                const manifestPath = path.join(bmadDir, '_config', 'manifest.yaml');
+                if (await fs.pathExists(manifestPath)) {
+                  const crypto = require('node:crypto');
+                  const currentContent = await fs.readFile(fullPath, 'utf8');
+                  const currentHash = crypto.createHash('sha256').update(currentContent).digest('hex');
+
+                  const yaml = require('yaml');
+                  const manifestContent = await fs.readFile(manifestPath, 'utf8');
+                  const manifestData = yaml.parse(manifestContent);
+                  const originalHash = manifestData.agentCustomizations?.[relativePath];
+
+                  // Only add to customFiles if hash differs (user modified)
+                  if (originalHash && currentHash !== originalHash) {
+                    customFiles.push(fullPath);
+                  }
+                }
+              }
+              continue;
+            }
+
+            if (bmadMemoryPaths.some((mp) => relativePath === mp || relativePath.startsWith(mp + '/'))) {
+              continue;
+            }
+
+            // Skip config.yaml files - these are regenerated on each install/update
+            if (fileName === 'config.yaml') {
+              continue;
+            }
+
+            if (!fileInfo) {
+              // File not in manifest = custom file
+              // EXCEPT: Agent .md files in module folders are generated files, not custom
+              // Only treat .md files under _config/agents/ as custom
+              if (!(fileName.endsWith('.md') && relativePath.includes('/agents/') && !relativePath.startsWith('_config/'))) {
+                customFiles.push(fullPath);
+              }
+            } else if (manifestHasHashes && fileInfo.hash) {
+              // File in manifest with hash - check if it was modified
+              const currentHash = await this.manifest.calculateFileHash(fullPath);
+              if (currentHash && currentHash !== fileInfo.hash) {
+                // Hash changed = file was modified
+                modifiedFiles.push({
+                  path: fullPath,
+                  relativePath: fileInfo.relativePath,
+                });
+              }
+            }
+          }
+        }
+      } catch {
+        // Ignore errors scanning directories
+      }
+    };
+
+    await scanDirectory(bmadDir);
+    return { customFiles, modifiedFiles };
+  }
+
+  /**
+   * Generate clean config.yaml files for each installed module
+   * @param {string} bmadDir - BMAD installation directory
+   * @param {Object} moduleConfigs - Collected configuration values
+   */
+  async generateModuleConfigs(bmadDir, moduleConfigs) {
+    const yaml = require('yaml');
+
+    // Extract core config values to share with other modules
+    const coreConfig = moduleConfigs.core || {};
+
+    // Get all installed module directories
+    const entries = await fs.readdir(bmadDir, { withFileTypes: true });
+    const nonModuleDirs = new Set(['_config', '_memory', 'memory', 'docs', 'scripts', 'custom']);
+    const installedModules = entries.filter((entry) => entry.isDirectory() && !nonModuleDirs.has(entry.name)).map((entry) => entry.name);
+
+    // Generate config.yaml for each installed module
+    for (const moduleName of installedModules) {
+      const modulePath = path.join(bmadDir, moduleName);
+
+      // Get module-specific config or use empty object if none
+      const config = moduleConfigs[moduleName] || {};
+
+      if (await fs.pathExists(modulePath)) {
+        const configPath = path.join(modulePath, 'config.yaml');
+
+        // Create header
+        const packageJson = require(path.join(getProjectRoot(), 'package.json'));
+        const header = `# ${moduleName.toUpperCase()} Module Configuration
+# Generated by BMAD installer
+# Version: ${packageJson.version}
+# Date: ${new Date().toISOString()}
+
+`;
+
+        // For non-core modules, add core config values directly
+        let finalConfig = { ...config };
+        let coreSection = '';
+
+        if (moduleName !== 'core' && coreConfig && Object.keys(coreConfig).length > 0) {
+          // Add core values directly to the module config
+          // These will be available for reference in the module
+          finalConfig = {
+            ...config,
+            ...coreConfig, // Spread core config values directly into the module config
+          };
+
+          // Create a comment section to identify core values
+          coreSection = '\n# Core Configuration Values\n';
+        }
+
+        // Clean the config to remove any non-serializable values (like functions)
+        const cleanConfig = structuredClone(finalConfig);
+
+        // Convert config to YAML
+        let yamlContent = yaml.stringify(cleanConfig, {
+          indent: 2,
+          lineWidth: 0,
+          minContentWidth: 0,
+        });
+
+        // If we have core values, reorganize the YAML to group them with their comment
+        if (coreSection && moduleName !== 'core') {
+          // Split the YAML into lines
+          const lines = yamlContent.split('\n');
+          const moduleConfigLines = [];
+          const coreConfigLines = [];
+
+          // Separate module-specific and core config lines
+          for (const line of lines) {
+            const key = line.split(':')[0].trim();
+            if (Object.prototype.hasOwnProperty.call(coreConfig, key)) {
+              coreConfigLines.push(line);
+            } else {
+              moduleConfigLines.push(line);
+            }
+          }
+
+          // Rebuild YAML with module config first, then core config with comment
+          yamlContent = moduleConfigLines.join('\n');
+          if (coreConfigLines.length > 0) {
+            yamlContent += coreSection + coreConfigLines.join('\n');
+          }
+        }
+
+        // Write the clean config file with POSIX-compliant final newline
+        const content = header + yamlContent;
+        await fs.writeFile(configPath, content.endsWith('\n') ? content : content + '\n', 'utf8');
+
+        // Track the config file in installedFiles
+        this.installedFiles.add(configPath);
+      }
+    }
+  }
+
+  /**
+   * Merge all module-help.csv files into a single bmad-help.csv.
+   * Scans all installed modules for module-help.csv and merges them.
+   * Output preserves the source schema verbatim — see schema below.
+   * @param {string} bmadDir - BMAD installation directory
+   * @param {Array<Object>} _agentEntries - Unused; retained for call-site compatibility
+   */
+  async mergeModuleHelpCatalogs(bmadDir, _agentEntries = []) {
+    const allRows = [];
+    const headerRow = MODULE_HELP_CSV_HEADER;
+    const COLUMN_COUNT = 13;
+    const PHASE_INDEX = 7;
+
+    // Get all installed module directories
+    const entries = await fs.readdir(bmadDir, { withFileTypes: true });
+    const nonModuleDirs = new Set(['_config', '_memory', 'memory', 'docs', 'scripts', 'custom']);
+    const installedModules = entries.filter((entry) => entry.isDirectory() && !nonModuleDirs.has(entry.name)).map((entry) => entry.name);
+
+    // Add core module to scan (it's installed at root level as _config, but we check src/core-skills)
+    const coreModulePath = getSourcePath('core-skills');
+    const modulePaths = new Map();
+
+    // Map all module source paths
+    if (await fs.pathExists(coreModulePath)) {
+      modulePaths.set('core', coreModulePath);
+    }
+
+    // Map installed module paths
+    for (const moduleName of installedModules) {
+      const modulePath = path.join(bmadDir, moduleName);
+      modulePaths.set(moduleName, modulePath);
+    }
+
+    // Scan each module for module-help.csv
+    for (const [moduleName, modulePath] of modulePaths) {
+      const helpFilePath = path.join(modulePath, 'module-help.csv');
+
+      if (await fs.pathExists(helpFilePath)) {
+        try {
+          const content = await fs.readFile(helpFilePath, 'utf8');
+          const lines = content.split('\n').filter((line) => line.trim() && !line.startsWith('#'));
+
+          let headerWarned = false;
+          for (const line of lines) {
+            // Header row: warn on drift from canonical schema, then skip.
+            // Data rows are loaded positionally regardless, so the warning
+            // is advisory — the maintainer should rename their columns.
+            if (line.startsWith('module,')) {
+              if (!headerWarned && line.trim() !== headerRow) {
+                await prompts.log.warn(
+                  `  ${moduleName}/module-help.csv header does not match canonical schema. ` +
+                    `Expected: ${headerRow} | Found: ${line.trim()} | Data loaded positionally.`,
+                );
+                headerWarned = true;
+              }
+              continue;
+            }
+
+            // Parse the line - handle quoted fields with commas
+            const columns = this.parseCSVLine(line);
+            if (columns.length < COLUMN_COUNT - 1) continue;
+
+            // Pad short rows; truncate over-long rows
+            const padded = columns.slice(0, COLUMN_COUNT);
+            while (padded.length < COLUMN_COUNT) padded.push('');
+
+            // If module column is empty, fill with this module's name
+            // (core stays empty so its rows render as universal tools)
+            if ((!padded[0] || padded[0].trim() === '') && moduleName !== 'core') {
+              padded[0] = moduleName;
+            }
+
+            allRows.push(padded.map((c) => this.escapeCSVField(c)).join(','));
+          }
+
+          if (process.env.BMAD_VERBOSE_INSTALL === 'true') {
+            await prompts.log.message(`  Merged module-help from: ${moduleName}`);
+          }
+        } catch (error) {
+          await prompts.log.warn(`  Warning: Failed to read module-help.csv from ${moduleName}: ${error.message}`);
+        }
+      }
+    }
+
+    // Sort by module, then phase. Stable sort preserves authored order within a phase.
+    const decorated = allRows.map((row, index) => ({ row, index, cols: this.parseCSVLine(row) }));
+    decorated.sort((a, b) => {
+      const moduleA = (a.cols[0] || '').toLowerCase();
+      const moduleB = (b.cols[0] || '').toLowerCase();
+      if (moduleA !== moduleB) return moduleA.localeCompare(moduleB);
+
+      const phaseA = a.cols[PHASE_INDEX] || '';
+      const phaseB = b.cols[PHASE_INDEX] || '';
+      if (phaseA !== phaseB) return phaseA.localeCompare(phaseB);
+
+      return a.index - b.index;
+    });
+    const sortedRows = decorated.map((d) => d.row);
+
+    // Write merged catalog
+    const outputDir = path.join(bmadDir, '_config');
+    await fs.ensureDir(outputDir);
+    const outputPath = path.join(outputDir, 'bmad-help.csv');
+
+    const mergedContent = [headerRow, ...sortedRows].join('\n');
+    await fs.writeFile(outputPath, mergedContent, 'utf8');
+
+    // Track the installed file
+    this.installedFiles.add(outputPath);
+
+    if (process.env.BMAD_VERBOSE_INSTALL === 'true') {
+      await prompts.log.message(`  Generated bmad-help.csv: ${sortedRows.length} workflows`);
+    }
+  }
+
+  /**
+   * Render a consolidated install summary using prompts.note()
+   * @param {Array} results - Array of {step, status: 'ok'|'error'|'warn', detail}
+   * @param {Object} context - {bmadDir, modules, ides, customFiles, modifiedFiles}
+   */
+  async renderInstallSummary(results, context = {}) {
+    const color = await prompts.getColor();
+    const selectedIdes = new Set((context.ides || []).map((ide) => String(ide).toLowerCase()));
+
+    // Build step lines with status indicators
+    const preVersions = context.preInstallVersions || new Map();
+    const lines = [];
+    for (const r of results) {
+      const stepLabel = r.step;
+
+      let icon;
+      if (r.status === 'ok') {
+        icon = color.green('\u2713');
+      } else if (r.status === 'warn') {
+        icon = color.yellow('!');
+      } else {
+        icon = color.red('\u2717');
+      }
+
+      // Build version detail for module results
+      let detail = '';
+      if (r.moduleCode && r.newVersion) {
+        const oldVersion = preVersions.get(r.moduleCode);
+        // Format a version label for display:
+        //   "main" → "main @ <short-sha>" (next channel shows what SHA landed)
+        //   "v1.7.0" or "1.7.0" → "v1.7.0" (prefix 'v' when missing)
+        //   anything else (legacy strings) → as-is
+        const fmt = (v, sha) => {
+          if (typeof v !== 'string' || !v) return '';
+          if (v === 'main' || v === 'HEAD') return sha ? `main @ ${sha.slice(0, 7)}` : 'main';
+          if (/^v?\d+\.\d+\.\d+/.test(v)) return v.startsWith('v') ? v : `v${v}`;
+          return v;
+        };
+        const newV = fmt(r.newVersion, r.newSha);
+        // 'main'/'HEAD' strings only identify the channel, not the commit, so
+        // we can't assert "no change" without comparing SHAs — and preVersions
+        // doesn't carry the old SHA. Render these as a refresh instead of a
+        // false-negative "no change".
+        const isMainLike = oldVersion === 'main' || oldVersion === 'HEAD';
+        if (oldVersion && oldVersion === r.newVersion && !isMainLike) {
+          detail = ` (${newV}, no change)`;
+        } else if (oldVersion && isMainLike) {
+          detail = ` (${newV}, refreshed)`;
+        } else if (oldVersion) {
+          detail = ` (${fmt(oldVersion, r.newSha)} → ${newV})`;
+        } else {
+          detail = ` (${newV}, installed)`;
+        }
+      } else if (r.detail) {
+        detail = ` (${r.detail})`;
+      }
+      lines.push(`  ${icon}  ${stepLabel}${detail}`);
+    }
+
+    if ((context.ides || []).length === 0) {
+      lines.push(`  ${color.green('\u2713')}  No IDE selected (installed in _bmad only)`);
+    }
+
+    // Context and warnings
+    lines.push('');
+    if (context.bmadDir) {
+      lines.push(`  Installed to: ${context.bmadDir}`);
+    }
+    if (context.customFiles && context.customFiles.length > 0) {
+      lines.push(`  ${color.cyan(`Custom files preserved: ${context.customFiles.length}`)}`);
+    }
+    if (context.modifiedFiles && context.modifiedFiles.length > 0) {
+      lines.push(`  ${color.yellow(`Modified files backed up (.bak): ${context.modifiedFiles.length}`)}`);
+    }
+
+    // Next steps
+    lines.push(
+      '',
+      '  Get started:',
+      `    1. Launch your AI agent from your project folder`,
+      `    2. Not sure what to do? Invoke the ${color.cyan('bmad-help')} skill and ask it what to do!`,
+      '',
+      `    Blog, Docs and Guides: ${color.blue('https://bmadcode.com/')}`,
+      `    Community: ${color.blue('https://discord.gg/gk8jAdXWmj')}`,
+    );
+
+    await prompts.box(lines.join('\n'), 'BMAD is ready to use!', {
+      rounded: true,
+      formatBorder: color.green,
+    });
+  }
+
+  /**
+   * Quick update method - preserves all settings and only prompts for new config fields
+   * @param {Object} config - Configuration with directory
+   * @returns {Object} Update result
+   */
+  async quickUpdate(config) {
+    const projectDir = path.resolve(config.directory);
+    const { bmadDir } = await this.findBmadDir(projectDir);
+
+    // Check if bmad directory exists
+    if (!(await fs.pathExists(bmadDir))) {
+      throw new Error(`BMAD not installed at ${bmadDir}. Use regular install for first-time setup.`);
+    }
+
+    // Detect existing installation
+    const existingInstall = await ExistingInstall.detect(bmadDir);
+    const installedModules = existingInstall.moduleIds;
+    const configuredIdes = existingInstall.ides;
+    const projectRoot = path.dirname(bmadDir);
+
+    // Get available modules (what we have source for)
+    const availableModulesData = await new OfficialModules().listAvailable();
+    const availableModules = [...availableModulesData.modules];
+
+    // Add external official modules to available modules
+    const externalModules = await this.externalModuleManager.listAvailable();
+    for (const externalModule of externalModules) {
+      if (installedModules.includes(externalModule.code) && !availableModules.some((m) => m.id === externalModule.code)) {
+        availableModules.push({
+          id: externalModule.code,
+          name: externalModule.name,
+          isExternal: true,
+          fromExternal: true,
+        });
+      }
+    }
+
+    // Add installed custom modules to available modules
+    const { CustomModuleManager } = require('../modules/custom-module-manager');
+    const customMgr = new CustomModuleManager();
+    for (const moduleId of installedModules) {
+      if (!availableModules.some((m) => m.id === moduleId)) {
+        const customSource = await customMgr.findModuleSourceByCode(moduleId, { bmadDir });
+        if (customSource) {
+          availableModules.push({
+            id: moduleId,
+            name: moduleId,
+            isExternal: true,
+            fromCustom: true,
+          });
+        }
+      }
+    }
+
+    const availableModuleIds = new Set(availableModules.map((m) => m.id));
+
+    // Only update modules that are BOTH installed AND available (we have source for)
+    const modulesToUpdate = installedModules.filter((id) => availableModuleIds.has(id));
+    const skippedModules = installedModules.filter((id) => !availableModuleIds.has(id));
+
+    if (skippedModules.length > 0) {
+      await prompts.log.warn(`Skipping ${skippedModules.length} module(s) - no source available: ${skippedModules.join(', ')}`);
+    }
+
+    // Build channel options from the existing manifest FIRST so the config
+    // collector below (which triggers external-module clones via
+    // findModuleSource) knows each module's recorded channel and doesn't
+    // silently redecide it. Without this, modules previously on 'next' or
+    // 'pinned' would trigger a stable-channel tag lookup at config-collection
+    // time, burning GitHub API quota and potentially failing.
+    const manifestData = await this.manifest.read(bmadDir);
+    const channelOptions = { global: null, nextSet: new Set(), pins: new Map(), warnings: [] };
+    if (manifestData?.modulesDetailed) {
+      const { fetchStableTags, classifyUpgrade, parseGitHubRepo } = require('../modules/channel-resolver');
+      for (const entry of manifestData.modulesDetailed) {
+        if (!entry?.name || !entry?.channel) continue;
+        if (entry.channel === 'pinned' && entry.version) {
+          channelOptions.pins.set(entry.name, entry.version);
+          continue;
+        }
+        if (entry.channel === 'next') {
+          channelOptions.nextSet.add(entry.name);
+          continue;
+        }
+        // Stable: classify the available upgrade. Patches and minors fall
+        // through (stable default picks up the top tag). A major upgrade
+        // requires opt-in, so under quick-update's non-interactive semantics
+        // we pin to the current version to prevent a silent breaking jump.
+        if (entry.channel === 'stable' && entry.version && entry.repoUrl) {
+          const parsed = parseGitHubRepo(entry.repoUrl);
+          if (!parsed) continue;
+          try {
+            const tags = await fetchStableTags(parsed.owner, parsed.repo);
+            if (tags.length === 0) continue;
+            const topTag = tags[0].tag;
+            const cls = classifyUpgrade(entry.version, topTag);
+            if (cls === 'major') {
+              channelOptions.pins.set(entry.name, entry.version);
+              await prompts.log.warn(
+                `${entry.name} ${entry.version} → ${topTag} is a new major release; staying on ${entry.version}. ` +
+                  `Run \`bmad install\` (Modify) with \`--pin ${entry.name}=${topTag}\` to accept.`,
+              );
+            }
+          } catch (error) {
+            // Tag lookup failed (offline, rate-limited). Stay on the current
+            // version rather than guessing — the existing cache is already
+            // at that ref, so re-using it keeps the install stable.
+            channelOptions.pins.set(entry.name, entry.version);
+            await prompts.log.warn(`Could not check ${entry.name} for updates (${error.message}); staying on ${entry.version}.`);
+          }
+        }
+      }
+    }
+
+    // Load existing configs and collect new fields (if any)
+    await prompts.log.info('Checking for new configuration options...');
+    const quickModules = new OfficialModules({ channelOptions });
+    await quickModules.loadExistingConfig(projectDir);
+
+    let promptedForNewFields = false;
+
+    const corePrompted = await quickModules.collectModuleConfigQuick('core', projectDir, true);
+    if (corePrompted) {
+      promptedForNewFields = true;
+    }
+
+    for (const moduleName of modulesToUpdate) {
+      if (moduleName === 'core') continue; // Already collected above
+      const modulePrompted = await quickModules.collectModuleConfigQuick(moduleName, projectDir, true);
+      if (modulePrompted) {
+        promptedForNewFields = true;
+      }
+    }
+
+    if (!promptedForNewFields) {
+      await prompts.log.success('All configuration is up to date, no new options to configure');
+    }
+
+    quickModules.collectedConfig._meta = {
+      version: require(path.join(getProjectRoot(), 'package.json')).version,
+      installDate: new Date().toISOString(),
+      lastModified: new Date().toISOString(),
+    };
+
+    // Build config and delegate to install()
+    const installConfig = {
+      directory: projectDir,
+      modules: modulesToUpdate,
+      ides: configuredIdes,
+      coreConfig: quickModules.collectedConfig.core,
+      moduleConfigs: quickModules.collectedConfig,
+      // Forward `--set` overrides so the post-install patch step
+      // (`applySetOverrides`) runs at the end of quick-update too. The
+      // installer.install path applies them after writeCentralConfig.
+      setOverrides: config.setOverrides || {},
+      actionType: 'install',
+      _quickUpdate: true,
+      _preserveModules: skippedModules,
+      _existingModules: installedModules,
+      channelOptions,
+    };
+
+    await this.install(installConfig);
+
+    return {
+      success: true,
+      moduleCount: modulesToUpdate.length,
+      hadNewFields: promptedForNewFields,
+      modules: modulesToUpdate,
+      skippedModules: skippedModules,
+      ides: configuredIdes,
+    };
+  }
+
+  /**
+   * Uninstall BMAD with selective removal options
+   * @param {string} directory - Project directory
+   * @param {Object} options - Uninstall options
+   * @param {boolean} [options.removeModules=true] - Remove _bmad/ directory
+   * @param {boolean} [options.removeIdeConfigs=true] - Remove IDE configurations
+   * @param {boolean} [options.removeOutputFolder=false] - Remove user artifacts output folder
+   * @returns {Object} Result with success status and removed components
+   */
+  async uninstall(directory, options = {}) {
+    const projectDir = path.resolve(directory);
+    const { bmadDir } = await this.findBmadDir(projectDir);
+
+    if (!(await fs.pathExists(bmadDir))) {
+      return { success: false, reason: 'not-installed' };
+    }
+
+    // 1. DETECT: Read state BEFORE deleting anything
+    const existingInstall = await ExistingInstall.detect(bmadDir);
+    const outputFolder = await this._readOutputFolder(bmadDir);
+
+    const removed = { modules: false, ideConfigs: false, outputFolder: false };
+
+    // 2. IDE CLEANUP (before _bmad/ deletion so configs are accessible)
+    if (options.removeIdeConfigs !== false) {
+      await this.uninstallIdeConfigs(projectDir, existingInstall, { silent: options.silent });
+      removed.ideConfigs = true;
+    }
+
+    // 3. OUTPUT FOLDER (only if explicitly requested)
+    if (options.removeOutputFolder === true && outputFolder) {
+      removed.outputFolder = await this.uninstallOutputFolder(projectDir, outputFolder);
+    }
+
+    // 4. BMAD DIRECTORY (last, after everything that needs it)
+    if (options.removeModules !== false) {
+      removed.modules = await this.uninstallModules(projectDir);
+    }
+
+    return { success: true, removed, version: existingInstall.installed ? existingInstall.version : null };
+  }
+
+  /**
+   * Uninstall IDE configurations only
+   * @param {string} projectDir - Project directory
+   * @param {Object} existingInstall - Detection result from detector.detect()
+   * @param {Object} [options] - Options (e.g. { silent: true })
+   * @returns {Promise<Object>} Results from IDE cleanup
+   */
+  async uninstallIdeConfigs(projectDir, existingInstall, options = {}) {
+    await this.ideManager.ensureInitialized();
+    const cleanupOptions = { isUninstall: true, silent: options.silent };
+    const ideList = existingInstall.ides;
+    if (ideList.length > 0) {
+      return this.ideManager.cleanupByList(projectDir, ideList, cleanupOptions);
+    }
+    return this.ideManager.cleanup(projectDir, cleanupOptions);
+  }
+
+  /**
+   * Remove user artifacts output folder
+   * @param {string} projectDir - Project directory
+   * @param {string} outputFolder - Output folder name (relative)
+   * @returns {Promise<boolean>} Whether the folder was removed
+   */
+  async uninstallOutputFolder(projectDir, outputFolder) {
+    if (!outputFolder) return false;
+    const resolvedProject = path.resolve(projectDir);
+    const outputPath = path.resolve(resolvedProject, outputFolder);
+    if (!outputPath.startsWith(resolvedProject + path.sep)) {
+      return false;
+    }
+    if (await fs.pathExists(outputPath)) {
+      await fs.remove(outputPath);
+      return true;
+    }
+    return false;
+  }
+
+  /**
+   * Remove the _bmad/ directory
+   * @param {string} projectDir - Project directory
+   * @returns {Promise<boolean>} Whether the directory was removed
+   */
+  async uninstallModules(projectDir) {
+    const { bmadDir } = await this.findBmadDir(projectDir);
+    if (await fs.pathExists(bmadDir)) {
+      await fs.remove(bmadDir);
+      return true;
+    }
+    return false;
+  }
+
+  /**
+   * Get installation status
+   */
+  async getStatus(directory) {
+    const projectDir = path.resolve(directory);
+    const { bmadDir } = await this.findBmadDir(projectDir);
+    return await ExistingInstall.detect(bmadDir);
+  }
+
+  /**
+   * Get available modules
+   */
+  async getAvailableModules() {
+    return await new OfficialModules().listAvailable();
+  }
+
+  /**
+   * Get the configured output folder name for a project
+   * Resolves bmadDir internally from projectDir
+   * @param {string} projectDir - Project directory
+   * @returns {string} Output folder name (relative, default: '_bmad-output')
+   */
+  async getOutputFolder(projectDir) {
+    const { bmadDir } = await this.findBmadDir(projectDir);
+    return this._readOutputFolder(bmadDir);
+  }
+
+  /**
+   * Find the bmad installation directory in a project
+   * Always uses the standard _bmad folder name
+   * @param {string} projectDir - Project directory
+   * @returns {Promise<Object>} { bmadDir: string }
+   */
+  async findBmadDir(projectDir) {
+    const bmadDir = path.join(projectDir, BMAD_FOLDER_NAME);
+    return { bmadDir };
+  }
+
+  /**
+   * Read the output_folder setting from module config files
+   * Checks bmm/config.yaml first, then other module configs
+   * @param {string} bmadDir - BMAD installation directory
+   * @returns {string} Output folder path or default
+   */
+  async _readOutputFolder(bmadDir) {
+    const yaml = require('yaml');
+
+    // Check bmm/config.yaml first (most common)
+    const bmmConfigPath = path.join(bmadDir, 'bmm', 'config.yaml');
+    if (await fs.pathExists(bmmConfigPath)) {
+      try {
+        const content = await fs.readFile(bmmConfigPath, 'utf8');
+        const config = yaml.parse(content);
+        if (config && config.output_folder) {
+          // Strip {project-root}/ prefix if present
+          return config.output_folder.replace(/^\{project-root\}[/\\]/, '');
+        }
+      } catch {
+        // Fall through to other modules
+      }
+    }
+
+    // Scan other module config.yaml files
+    try {
+      const entries = await fs.readdir(bmadDir, { withFileTypes: true });
+      for (const entry of entries) {
+        if (!entry.isDirectory() || entry.name === 'bmm' || entry.name.startsWith('_')) continue;
+        const configPath = path.join(bmadDir, entry.name, 'config.yaml');
+        if (await fs.pathExists(configPath)) {
+          try {
+            const content = await fs.readFile(configPath, 'utf8');
+            const config = yaml.parse(content);
+            if (config && config.output_folder) {
+              return config.output_folder.replace(/^\{project-root\}[/\\]/, '');
+            }
+          } catch {
+            // Continue scanning
+          }
+        }
+      }
+    } catch {
+      // Directory scan failed
+    }
+
+    // Default fallback
+    return '_bmad-output';
+  }
+
+  /**
+   * Parse a CSV line, handling quoted fields
+   * @param {string} line - CSV line to parse
+   * @returns {Array} Array of field values
+   */
+  parseCSVLine(line) {
+    const result = [];
+    let current = '';
+    let inQuotes = false;
+
+    for (let i = 0; i < line.length; i++) {
+      const char = line[i];
+      const nextChar = line[i + 1];
+
+      if (char === '"') {
+        if (inQuotes && nextChar === '"') {
+          // Escaped quote
+          current += '"';
+          i++; // Skip next quote
+        } else {
+          // Toggle quote mode
+          inQuotes = !inQuotes;
+        }
+      } else if (char === ',' && !inQuotes) {
+        result.push(current);
+        current = '';
+      } else {
+        current += char;
+      }
+    }
+    result.push(current);
+    return result;
+  }
+
+  /**
+   * Escape a CSV field if it contains special characters
+   * @param {string} field - Field value to escape
+   * @returns {string} Escaped field
+   */
+  escapeCSVField(field) {
+    if (field === null || field === undefined) {
+      return '';
+    }
+    const str = String(field);
+    // If field contains comma, quote, or newline, wrap in quotes and escape inner quotes
+    if (str.includes(',') || str.includes('"') || str.includes('\n')) {
+      return `"${str.replaceAll('"', '""')}"`;
+    }
+    return str;
+  }
+}
+
+module.exports = { Installer };