sdc-qrf 0.1.3 → 0.3.1

package/lib/converter/fhirToFce/questionnaireResponse/processReference.js

@@ -0,0 +1,18 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.processReference = void 0;
+const tslib_1 = require("tslib");
+const converter_1 = require("../../../converter");
+function processReference(fhirQuestionnaireResponse) {
+    const { encounter, source } = fhirQuestionnaireResponse, commonProperties = tslib_1.__rest(fhirQuestionnaireResponse, ["encounter", "source"]);
+    const fceQuestionnaireResponse = commonProperties;
+    if (encounter === null || encounter === void 0 ? void 0 : encounter.reference) {
+        fceQuestionnaireResponse.encounter = (0, converter_1.fromFHIRReference)(encounter);
+    }
+    if (source === null || source === void 0 ? void 0 : source.reference) {
+        fceQuestionnaireResponse.source = (0, converter_1.fromFHIRReference)(source);
+    }
+    return fceQuestionnaireResponse;
+}
+exports.processReference = processReference;
+//# sourceMappingURL=processReference.js.map

package/lib/converter/fhirToFce/questionnaireResponse/processReference.js.map

@@ -0,0 +1 @@
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package/lib/converter/fhirToFce/utils.d.ts

@@ -0,0 +1,3 @@
+import { Questionnaire as FHIRQuestionnaire } from 'fhir/r4b';
+export declare function checkFhirQuestionnaireProfile(fhirQuestionnaire: FHIRQuestionnaire): void;
+export declare function trimUndefined(e: any): any;

package/lib/converter/fhirToFce/utils.js

@@ -0,0 +1,37 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.trimUndefined = exports.checkFhirQuestionnaireProfile = void 0;
+function checkFhirQuestionnaireProfile(fhirQuestionnaire) {
+    var _a, _b, _c, _d, _e;
+    if (!(((_c = (_b = (_a = fhirQuestionnaire.meta) === null || _a === void 0 ? void 0 : _a.profile) === null || _b === void 0 ? void 0 : _b.length) !== null && _c !== void 0 ? _c : 0) === 1 &&
+        ((_e = (_d = fhirQuestionnaire.meta) === null || _d === void 0 ? void 0 : _d.profile) === null || _e === void 0 ? void 0 : _e[0]) === 'https://beda.software/beda-emr-questionnaire')) {
+        throw new Error('Only beda emr questionanire supported');
+    }
+}
+exports.checkFhirQuestionnaireProfile = checkFhirQuestionnaireProfile;
+function trimUndefined(e) {
+    for (const prop in e) {
+        // eslint-disable-next-line no-prototype-builtins
+        if (e.hasOwnProperty(prop)) {
+            const val = e[prop];
+            if (val === undefined) {
+                delete e[prop];
+            }
+            else if (typeof val === 'object') {
+                if (Array.isArray(val)) {
+                    for (let i = 0; i < val.length; i++) {
+                        if (typeof val[i] === 'object') {
+                            trimUndefined(val[i]);
+                        }
+                    }
+                }
+                else {
+                    trimUndefined(val);
+                }
+            }
+        }
+    }
+    return e;
+}
+exports.trimUndefined = trimUndefined;
+//# sourceMappingURL=utils.js.map

package/lib/converter/fhirToFce/utils.js.map

@@ -0,0 +1 @@
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package/lib/converter/index.d.ts

@@ -0,0 +1,12 @@
+import { Reference as FHIRReference, Extension as FHIRExtension, QuestionnaireItem as FHIRQuestionnaireItem } from 'fhir/r4b';
+import { Extension as FCEExtension, QuestionnaireItem as FCEQuestionnaireItem, InternalReference } from 'shared/src/contrib/aidbox';
+import { fromFirstClassExtension } from './fceToFhir';
+import { toFirstClassExtension } from './fhirToFce';
+import { processLaunchContext as processLaunchContextToFce } from './fhirToFce/questionnaire/processExtensions';
+export declare function convertFromFHIRExtension(extension: FHIRExtension): Partial<FCEQuestionnaireItem> | undefined;
+export declare function convertToFHIRExtension(item: FCEQuestionnaireItem): FHIRExtension[];
+export declare function extractExtension(extension: FCEExtension[] | undefined, url: 'ex:createdAt'): string | undefined;
+export declare function findExtension(item: FHIRQuestionnaireItem, url: string): FHIRExtension | undefined;
+export declare function fromFHIRReference(r?: FHIRReference): InternalReference | undefined;
+export declare function toFHIRReference(r?: InternalReference): FHIRReference | undefined;
+export { toFirstClassExtension, fromFirstClassExtension, processLaunchContextToFce };

package/lib/converter/index.js

@@ -0,0 +1,84 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.processLaunchContextToFce = exports.fromFirstClassExtension = exports.toFirstClassExtension = exports.toFHIRReference = exports.fromFHIRReference = exports.findExtension = exports.extractExtension = exports.convertToFHIRExtension = exports.convertFromFHIRExtension = void 0;
+const tslib_1 = require("tslib");
+const extensions_1 = require("./extensions");
+const fceToFhir_1 = require("./fceToFhir");
+Object.defineProperty(exports, "fromFirstClassExtension", { enumerable: true, get: function () { return fceToFhir_1.fromFirstClassExtension; } });
+const fhirToFce_1 = require("./fhirToFce");
+Object.defineProperty(exports, "toFirstClassExtension", { enumerable: true, get: function () { return fhirToFce_1.toFirstClassExtension; } });
+const processExtensions_1 = require("./fhirToFce/questionnaire/processExtensions");
+Object.defineProperty(exports, "processLaunchContextToFce", { enumerable: true, get: function () { return processExtensions_1.processLaunchContext; } });
+function convertFromFHIRExtension(extension) {
+    const identifier = extension.url;
+    const transformer = extensions_1.extensionTransformers[identifier];
+    if (transformer !== undefined) {
+        if ('transform' in transformer) {
+            return transformer.transform.fromExtension(extension);
+        }
+        else {
+            return { [transformer.path.questionnaire]: extension[transformer.path.extension] };
+        }
+    }
+}
+exports.convertFromFHIRExtension = convertFromFHIRExtension;
+function convertToFHIRExtension(item) {
+    const extensions = [];
+    for (const identifer in extensions_1.ExtensionIdentifier) {
+        const transformer = extensions_1.extensionTransformers[extensions_1.ExtensionIdentifier[identifer]];
+        if ('transform' in transformer) {
+            const extension = transformer.transform.toExtension(item);
+            if (extension !== undefined) {
+                extensions.push(extension);
+            }
+        }
+        else {
+            const extensionValue = item[transformer.path.questionnaire];
+            if (extensionValue !== undefined) {
+                const extension = {
+                    [transformer.path.extension]: extensionValue,
+                    url: extensions_1.ExtensionIdentifier[identifer],
+                };
+                extensions.push(extension);
+            }
+        }
+    }
+    return extensions;
+}
+exports.convertToFHIRExtension = convertToFHIRExtension;
+function extractExtension(extension, url) {
+    var _a;
+    return (_a = extension === null || extension === void 0 ? void 0 : extension.find((e) => e.url === url)) === null || _a === void 0 ? void 0 : _a.valueInstant;
+}
+exports.extractExtension = extractExtension;
+function findExtension(item, url) {
+    var _a;
+    return (_a = item.extension) === null || _a === void 0 ? void 0 : _a.find((ext) => ext.url === url);
+}
+exports.findExtension = findExtension;
+function fromFHIRReference(r) {
+    if (!r || !r.reference) {
+        return undefined;
+    }
+    const { reference: literalReference } = r, commonReferenceProperties = tslib_1.__rest(r, ["reference"]);
+    const isHistoryVersionLink = r.reference.split('/').slice(-2, -1)[0] === '_history';
+    if (isHistoryVersionLink) {
+        const [, , id, resourceType] = r.reference.split('/').reverse();
+        return Object.assign(Object.assign({}, commonReferenceProperties), { id: id, resourceType });
+    }
+    else {
+        const [id, resourceType] = r.reference.split('/').reverse();
+        return Object.assign(Object.assign({}, commonReferenceProperties), { id: id, resourceType });
+    }
+}
+exports.fromFHIRReference = fromFHIRReference;
+function toFHIRReference(r) {
+    if (!r) {
+        return undefined;
+    }
+    const { id, resourceType } = r, commonReferenceProperties = tslib_1.__rest(r, ["id", "resourceType"]);
+    delete commonReferenceProperties.resource;
+    return Object.assign(Object.assign({}, commonReferenceProperties), { reference: `${resourceType}/${id}` });
+}
+exports.toFHIRReference = toFHIRReference;
+//# sourceMappingURL=index.js.map

package/lib/converter/index.js.map

@@ -0,0 +1 @@
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package/lib/index.d.ts

@@ -2,3 +2,4 @@ export * from './types';
 export * from './utils';
 export * from './hooks';
 export * from './components';
+export * from './converter';

package/lib/index.js

@@ -5,4 +5,5 @@ tslib_1.__exportStar(require("./types"), exports);
 tslib_1.__exportStar(require("./utils"), exports);
 tslib_1.__exportStar(require("./hooks"), exports);
 tslib_1.__exportStar(require("./components"), exports);
+tslib_1.__exportStar(require("./converter"), exports);
 //# sourceMappingURL=index.js.map

package/lib/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,kDAAwB;AACxB,kDAAwB;AACxB,kDAAwB;AACxB,uDAA6B"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,kDAAwB;AACxB,kDAAwB;AACxB,kDAAwB;AACxB,uDAA6B;AAC7B,sDAA4B"}

package/lib/setupTests.d.ts

@@ -0,0 +1 @@
+import '@testing-library/jest-dom/extend-expect';

package/lib/setupTests.js

@@ -0,0 +1,4 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+require("@testing-library/jest-dom/extend-expect");
+//# sourceMappingURL=setupTests.js.map

package/lib/setupTests.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"setupTests.js","sourceRoot":"","sources":["../src/setupTests.ts"],"names":[],"mappings":";;AAAA,mDAAiD"}

package/lib/types.d.ts

@@ -1,20 +1,20 @@
 import { ComponentType } from 'react';
 import { Observation, ParametersParameter, Questionnaire, QuestionnaireItem, QuestionnaireResponse, QuestionnaireResponseItem, QuestionnaireResponseItemAnswer } from 'shared/src/contrib/aidbox';
-export declare type GroupItemComponent = ComponentType<GroupItemProps>;
-export declare type QuestionItemComponent = ComponentType<QuestionItemProps>;
-export declare type CustomWidgetsMapping = {
+export type GroupItemComponent = ComponentType<GroupItemProps>;
+export type QuestionItemComponent = ComponentType<QuestionItemProps>;
+export type CustomWidgetsMapping = {
     [linkId: string]: QuestionItemComponent;
 };
-export declare type QuestionItemComponentMapping = {
+export type QuestionItemComponentMapping = {
     [type: string]: QuestionItemComponent;
 };
-export declare type ItemControlQuestionItemComponentMapping = {
+export type ItemControlQuestionItemComponentMapping = {
     [code: string]: QuestionItemComponent;
 };
-export declare type ItemControlGroupItemComponentMapping = {
+export type ItemControlGroupItemComponentMapping = {
     [code: string]: GroupItemComponent;
 };
-export declare type ItemContext = {
+export type ItemContext = {
     resource: QuestionnaireResponse;
     questionnaire: Questionnaire;
     context: QuestionnaireResponseItem | QuestionnaireResponse;
@@ -46,7 +46,7 @@ export interface GroupItemProps {
     context: ItemContext[];
     parentPath: string[];
 }
-export declare type AnswerValue = Required<QuestionnaireResponseItemAnswer>['value'] & Required<Observation>['value'];
+export type AnswerValue = Required<QuestionnaireResponseItemAnswer>['value'] & Required<Observation>['value'];
 export interface RepeatableFormGroupItems {
     question?: string;
     items?: FormItems[];
@@ -55,13 +55,13 @@ interface NotRepeatableFormGroupItems {
     question?: string;
     items?: FormItems;
 }
-export declare type FormGroupItems = RepeatableFormGroupItems | NotRepeatableFormGroupItems;
+export type FormGroupItems = RepeatableFormGroupItems | NotRepeatableFormGroupItems;
 export interface FormAnswerItems<T = any> {
     value: T;
     question?: string;
     items?: FormItems;
 }
-export declare type FormItems = Record<string, FormGroupItems | FormAnswerItems[] | undefined>;
+export type FormItems = Record<string, FormGroupItems | FormAnswerItems[] | undefined>;
 export interface QuestionnaireResponseFormData {
     formValues: FormItems;
     context: {

package/lib/utils.d.ts

@@ -55,4 +55,7 @@ export declare function getChecker(operator: string): (values: Array<{
 export declare function removeDisabledAnswers(questionnaire: Questionnaire, values: FormItems, context: ItemContext): FormItems;
 export declare function getEnabledQuestions(questionnaireItems: QuestionnaireItem[], parentPath: string[], values: FormItems, context: ItemContext): QuestionnaireItem[];
 export declare function calcInitialContext(qrfDataContext: QuestionnaireResponseFormData['context'], values: FormItems): ItemContext;
-export declare function parseFhirQueryExpression(expression: string, context: ItemContext): any[];
+export declare function parseFhirQueryExpression(expression: string, context: ItemContext): (string | {
+    [k: string]: string | string[] | null;
+} | undefined)[];
+export declare function isValueEmpty(value: any): boolean;

package/lib/utils.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseFhirQueryExpression = exports.calcInitialContext = exports.getEnabledQuestions = exports.removeDisabledAnswers = exports.getChecker = exports.isValueEqual = exports.findAnswersForQuestion = exports.findAnswersForQuestionsRecursive = exports.mapResponseToForm = exports.mapFormToResponse = exports.compareValue = exports.calcContext = exports.getBranchItems = exports.wrapAnswerValue = void 0;
+exports.isValueEmpty = exports.parseFhirQueryExpression = exports.calcInitialContext = exports.getEnabledQuestions = exports.removeDisabledAnswers = exports.getChecker = exports.isValueEqual = exports.findAnswersForQuestion = exports.findAnswersForQuestionsRecursive = exports.mapResponseToForm = exports.mapFormToResponse = exports.compareValue = exports.calcContext = exports.getBranchItems = exports.wrapAnswerValue = void 0;
 const tslib_1 = require("tslib");
 const fhirpath_1 = tslib_1.__importDefault(require("fhirpath"));
 const lodash_1 = tslib_1.__importDefault(require("lodash"));
@@ -299,7 +299,7 @@ function getChecker(operator) {
     if (operator === 'exists') {
         return (values, answerValue) => {
             var _a;
-            const answersLength = lodash_1.default.reject(values, (value) => lodash_1.default.isEmpty(value.value) || lodash_1.default.every(lodash_1.default.mapValues(value.value, lodash_1.default.isEmpty))).length;
+            const answersLength = lodash_1.default.reject(values, (value) => isValueEmpty(value.value) || lodash_1.default.every(lodash_1.default.mapValues(value.value, isValueEmpty))).length;
             const answer = (_a = answerValue === null || answerValue === void 0 ? void 0 : answerValue.boolean) !== null && _a !== void 0 ? _a : true;
             return answersLength > 0 === answer;
         };
@@ -493,4 +493,11 @@ function parseFhirQueryExpression(expression, context) {
     return [resourceType, searchParams];
 }
 exports.parseFhirQueryExpression = parseFhirQueryExpression;
+function isValueEmpty(value) {
+    if (lodash_1.default.isNaN(value)) {
+        console.warn('Please be aware that a NaN value has been detected. In the context of an "exist" operator, a NaN value is interpreted as a non-existent value. This may lead to unexpected behavior in your code. Ensure to handle or correct this to maintain the integrity of your application.');
+    }
+    return lodash_1.default.isFinite(value) || lodash_1.default.isBoolean(value) ? false : lodash_1.default.isEmpty(value);
+}
+exports.isValueEmpty = isValueEmpty;
 //# sourceMappingURL=utils.js.map

package/lib/utils.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,17 +1,17 @@
 {
     "name": "sdc-qrf",
     "license": "MIT",
-    "version": "0.1.3",
+    "version": "0.3.1",
     "scripts": {
         "build": "tsc",
         "coverage": "jest --coverage --coverageReporters=text-lcov | coveralls",
-        "test": "jest",
         "prepare": "npm run build",
+        "test": "vitest run --no-threads",
         "typecheck": "tsc"
     },
     "dependencies": {
         "classnames": "^2.3.1",
-        "fhirpath": "^2.14.5",
+        "fhirpath": "^3.5.0",
         "lodash": "^4.17.15",
         "tslib": "^2.4.0",
         "query-string": "^7.1.1"
@@ -28,8 +28,7 @@
         "jest": "^27.5.1",
         "ts-jest": "^27.1.5",
         "react": "^18.2.0",
-        "react-test-renderer": "^18.2.0",
-        "typescript": "^4.1.2"
+        "react-test-renderer": "^18.2.0"
     },
     "files": [
         "lib/**/*",

package/src/components.tsx

@@ -1,7 +1,7 @@
 import fhirpath from 'fhirpath';
 import _ from 'lodash';
 import isEqual from 'lodash/isEqual';
-import { ReactChild, useEffect, useContext, useMemo, useRef } from 'react';
+import React, { ReactChild, useEffect, useContext, useMemo, useRef } from 'react';
 
 import { QuestionnaireItem } from 'shared/src/contrib/aidbox';
 
@@ -29,7 +29,7 @@ export function QuestionItems(props: QuestionItemsProps) {
     const { formValues } = useQuestionnaireResponseFormContext();
 
     return (
-        <>
+        <React.Fragment>
             {getEnabledQuestions(questionItems, parentPath, formValues, context).map(
                 (item, index) => {
                     return (
@@ -42,7 +42,7 @@ export function QuestionItems(props: QuestionItemsProps) {
                     );
                 },
             )}
-        </>
+        </React.Fragment>
     );
 }
 
@@ -112,11 +112,11 @@ export function QuestionItem(props: QuestionItemProps) {
         if (itemControl) {
             if (
                 !itemControlGroupItemComponents ||
-                !itemControlGroupItemComponents[itemControl?.coding?.[0]?.code!]
+                !itemControlGroupItemComponents[itemControl.coding![0]!.code!]
             ) {
-                console.warn(`QRF: Unsupported group itemControl '${itemControl?.coding?.[0]
-                    ?.code!}'. 
-                Please define 'itemControlGroupWidgets' for '${itemControl?.coding?.[0]?.code!}'`);
+                console.warn(`QRF: Unsupported group itemControl '${itemControl.coding![0]!
+                    .code!}'. 
+                Please define 'itemControlGroupWidgets' for '${itemControl.coding![0]!.code!}'`);
                 const DefaultComponent = groupItemComponent;
                 return DefaultComponent ? (
                     <DefaultComponent
@@ -127,7 +127,7 @@ export function QuestionItem(props: QuestionItemProps) {
                 ) : null;
             }
 
-            const Component = itemControlGroupItemComponents[itemControl?.coding?.[0]?.code!]!;
+            const Component = itemControlGroupItemComponents[itemControl.coding![0]!.code!]!;
 
             return (
                 <Component context={context} parentPath={parentPath} questionItem={questionItem} />
@@ -153,11 +153,11 @@ export function QuestionItem(props: QuestionItemProps) {
     if (itemControl) {
         if (
             !itemControlQuestionItemComponents ||
-            !itemControlQuestionItemComponents[itemControl.coding?.[0]?.code!]
+            !itemControlQuestionItemComponents[itemControl.coding![0]!.code!]
         ) {
             console.warn(
-                `QRF: Unsupported itemControl '${itemControl?.coding?.[0]?.code!}'.
-Please define 'itemControlWidgets' for '${itemControl?.coding?.[0]?.code!}'`,
+                `QRF: Unsupported itemControl '${itemControl.coding![0]!.code!}'.
+Please define 'itemControlWidgets' for '${itemControl.coding![0]!.code!}'`,
             );
 
             const DefaultComponent = questionItemComponents[questionItem.type];
@@ -170,7 +170,7 @@ Please define 'itemControlWidgets' for '${itemControl?.coding?.[0]?.code!}'`,
             ) : null;
         }
 
-        const Component = itemControlQuestionItemComponents[itemControl?.coding?.[0]?.code!]!;
+        const Component = itemControlQuestionItemComponents[itemControl.coding![0]!.code!]!;
 
         return <Component context={context} parentPath={parentPath} questionItem={questionItem} />;
     }