sdc-qrf 0.1.3 → 0.3.1

package/src/converter/__tests__/resources/questionnaire_response_fhir/immunization.json

@@ -0,0 +1,77 @@
+{
+  "questionnaire": "immunization",
+  "meta": {
+    "lastUpdated": "2023-04-06T02:39:03.018390Z",
+    "versionId": "20519",
+    "extension": [
+      {
+        "url": "ex:createdAt",
+        "valueInstant": "2023-04-06T02:38:51.964987Z"
+      }
+    ]
+  },
+  "encounter": {
+    "reference": "Encounter/e133b999-9e91-4ebd-967e-450bad770682"
+  },
+  "item": [
+    {
+      "answer": [
+        {
+          "valueDateTime": "2023-04-06T02:38:50+00:00"
+        }
+      ],
+      "linkId": "dateTime"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "e133b999-9e91-4ebd-967e-450bad770682"
+        }
+      ],
+      "linkId": "encounterId"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "683e382b-fed4-433e-9b6d-a847a7953bc0"
+        }
+      ],
+      "linkId": "patientId"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "Emily Nguyen"
+        }
+      ],
+      "linkId": "patientName"
+    },
+    {
+      "answer": [
+        {
+          "valueCoding": {
+            "code": "173",
+            "system": "http://hl7.org/fhir/sid/cvx",
+            "display": "cholera, BivWC"
+          }
+        }
+      ],
+      "linkId": "vaccine-code"
+    },
+    {
+      "answer": [
+        {
+          "valueDate": "2023-04-13"
+        }
+      ],
+      "linkId": "date-of-injection"
+    }
+  ],
+  "resourceType": "QuestionnaireResponse",
+  "source": {
+    "reference": "Patient/683e382b-fed4-433e-9b6d-a847a7953bc0"
+  },
+  "status": "completed",
+  "id": "5d59e534-a7ce-4254-8a41-31b3895ea525",
+  "authored": "2023-04-06T02:39:02Z"
+}

package/src/converter/__tests__/resources/questionnaire_response_fhir/medication.json

@@ -0,0 +1,101 @@
+{
+  "questionnaire": "medication",
+  "meta": {
+    "lastUpdated": "2023-04-06T01:59:42.145206Z",
+    "versionId": "20458",
+    "extension": [
+      {
+        "url": "ex:createdAt",
+        "valueInstant": "2023-04-06T01:59:02.311377Z"
+      }
+    ]
+  },
+  "encounter": {
+    "reference": "Encounter/e133b999-9e91-4ebd-967e-450bad770682"
+  },
+  "item": [
+    {
+      "answer": [
+        {
+          "valueDateTime": "2023-04-06T01:59:00+00:00"
+        }
+      ],
+      "linkId": "dateTime"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "e133b999-9e91-4ebd-967e-450bad770682"
+        }
+      ],
+      "linkId": "encounterId"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "683e382b-fed4-433e-9b6d-a847a7953bc0"
+        }
+      ],
+      "linkId": "patientId"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "Emily Nguyen"
+        }
+      ],
+      "linkId": "patientName"
+    },
+    {
+      "answer": [
+        {
+          "valueCoding": {
+            "code": "261000",
+            "system": "http://snomed.info/sct",
+            "display": "Codeine phosphate"
+          }
+        }
+      ],
+      "linkId": "medication"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "25 or 20"
+        }
+      ],
+      "linkId": "dosage"
+    },
+    {
+      "answer": [
+        {
+          "valueDate": "2023-04-10"
+        }
+      ],
+      "linkId": "start-date"
+    },
+    {
+      "answer": [
+        {
+          "valueDate": "2023-04-17"
+        }
+      ],
+      "linkId": "stop-date"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "nothing"
+        }
+      ],
+      "linkId": "notes"
+    }
+  ],
+  "resourceType": "QuestionnaireResponse",
+  "source": {
+    "reference": "Patient/683e382b-fed4-433e-9b6d-a847a7953bc0"
+  },
+  "status": "completed",
+  "id": "3d077aed-ccd4-43d4-843e-0e2224e7571e",
+  "authored": "2023-04-06T01:59:41Z"
+}

package/src/converter/__tests__/resources/questionnaire_response_fhir/new_appointment.json

@@ -0,0 +1,86 @@
+{
+    "authored": "2023-04-05T06:27:57Z",
+    "id": "cf6d9d4b-bfcd-463f-9d26-b6769c2a3fc3",
+    "item": [
+        {
+            "answer": [
+                {
+                    "valueString": "683e382b-fed4-433e-9b6d-a847a7953bc0"
+                }
+            ],
+            "linkId": "patientId"
+        },
+        {
+            "answer": [
+                {
+                    "valueString": "Emily Nguyen"
+                }
+            ],
+            "linkId": "patientName"
+        },
+        {
+            "answer": [
+                {
+                    "valueReference": {
+                        "display": "Sanjay Patel - Cardiology",
+                        "reference": "PractitionerRole/429e6a55-8a64-4ede-ad12-1206522253eb"
+                    }
+                }
+            ],
+            "linkId": "practitioner-role"
+        },
+        {
+            "answer": [
+                {
+                    "valueCoding": {
+                        "code": "consultation",
+                        "display": "The first appointment",
+                        "system": "http://fhir.org/guides/argonaut-scheduling/CodeSystem/visit-type"
+                    }
+                }
+            ],
+            "linkId": "service"
+        },
+        {
+            "answer": [
+                {
+                    "valueDate": "2023-04-26"
+                }
+            ],
+            "linkId": "date"
+        },
+        {
+            "item": [
+                {
+                    "answer": [
+                        {
+                            "valueTime": "15:00:00"
+                        }
+                    ],
+                    "linkId": "start-time"
+                },
+                {
+                    "answer": [
+                        {
+                            "valueTime": "16:00:00"
+                        }
+                    ],
+                    "linkId": "end-time"
+                }
+            ],
+            "linkId": "Time period"
+        }
+    ],
+    "meta": {
+        "extension": [
+            {
+                "url": "ex:createdAt",
+                "valueInstant": "2023-04-05T06:27:58.499391Z"
+            }
+        ],
+        "lastUpdated": "2023-04-05T06:27:58.499391Z",
+        "versionId": "20420"
+    },
+    "resourceType": "QuestionnaireResponse",
+    "status": "completed"
+}

package/src/converter/__tests__/resources/questionnaire_response_fhir/patient.json

@@ -0,0 +1,78 @@
+{
+    "authored": "2023-04-05T06:03:19Z",
+    "id": "24306b57-b463-4e39-807f-e715a80bbe5f",
+    "item": [
+        {
+            "answer": [],
+            "linkId": "patient-id"
+        },
+        {
+            "answer": [
+                {
+                    "valueString": "Nguyen"
+                }
+            ],
+            "linkId": "last-name"
+        },
+        {
+            "answer": [
+                {
+                    "valueString": "Emily"
+                }
+            ],
+            "linkId": "first-name"
+        },
+        {
+            "answer": [
+                {
+                    "valueString": "Marie"
+                }
+            ],
+            "linkId": "middle-name"
+        },
+        {
+            "answer": [
+                {
+                    "valueDate": "1991-12-29"
+                }
+            ],
+            "linkId": "birth-date"
+        },
+        {
+            "answer": [
+                {
+                    "valueString": "female"
+                }
+            ],
+            "linkId": "gender"
+        },
+        {
+            "answer": [
+                {
+                    "valueString": "123-45-6789"
+                }
+            ],
+            "linkId": "ssn"
+        },
+        {
+            "answer": [
+                {
+                    "valueString": "15551234567"
+                }
+            ],
+            "linkId": "mobile"
+        }
+    ],
+    "meta": {
+        "extension": [
+            {
+                "url": "ex:createdAt",
+                "valueInstant": "2023-04-05T06:03:21.353895Z"
+            }
+        ],
+        "lastUpdated": "2023-04-05T06:03:21.353895Z",
+        "versionId": "20412"
+    },
+    "resourceType": "QuestionnaireResponse",
+    "status": "completed"
+}

package/src/converter/__tests__/resources/questionnaire_response_fhir/phq_2_phq_9.json

@@ -0,0 +1,170 @@
+{
+  "authored": "2023-04-06T02:33:05Z",
+  "encounter": {
+    "reference": "Encounter/e133b999-9e91-4ebd-967e-450bad770682"
+  },
+  "id": "846558b9-4c03-4af6-a258-62b0390633e2",
+  "item": [
+    {
+      "answer": [
+        {
+          "valueDateTime": "2023-04-06T02:32:40+00:00"
+        }
+      ],
+      "linkId": "dateTime"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "683e382b-fed4-433e-9b6d-a847a7953bc0"
+        }
+      ],
+      "linkId": "patientId"
+    },
+    {
+      "answer": [
+        {
+          "valueString": "Emily Nguyen"
+        }
+      ],
+      "linkId": "patientName"
+    },
+    {
+      "item": [
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6568-5",
+                "display": "Not at all",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44250-9"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6569-3",
+                "display": "Several days",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44255-8"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6570-1",
+                "display": "More than half the days",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44259-0"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6571-9",
+                "display": "Nearly every day",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44254-1"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6570-1",
+                "display": "More than half the days",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44251-7"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6569-3",
+                "display": "Several days",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44258-2"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6568-5",
+                "display": "Not at all",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44252-5"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6569-3",
+                "display": "Several days",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44253-3"
+        },
+        {
+          "answer": [
+            {
+              "valueCoding": {
+                "code": "LA6570-1",
+                "display": "More than half the days",
+                "system": "http://loinc.org"
+              }
+            }
+          ],
+          "linkId": "44260-8"
+        },
+        {
+          "answer": [
+            {
+              "valueInteger": 12
+            }
+          ],
+          "linkId": "phq9-total-score"
+        }
+      ],
+      "linkId": "phq2phq9"
+    }
+  ],
+  "meta": {
+    "extension": [
+      {
+        "url": "ex:createdAt",
+        "valueInstant": "2023-04-06T02:32:41.569773Z"
+      }
+    ],
+    "lastUpdated": "2023-04-06T02:33:06.758734Z",
+    "versionId": "20508"
+  },
+  "questionnaire": "phq2phq9",
+  "resourceType": "QuestionnaireResponse",
+  "source": {
+    "reference": "Patient/683e382b-fed4-433e-9b6d-a847a7953bc0"
+  },
+  "status": "completed"
+}

package/src/converter/__tests__/resources/questionnaire_response_fhir/physicalexam.json

@@ -0,0 +1,158 @@
+{
+  "questionnaire": "physical-exam",
+  "meta": {
+    "lastUpdated": "2023-04-06T02:05:52.434771Z",
+    "versionId": "20470",
+    "extension": [
+      {
+        "url": "ex:createdAt",
+        "valueInstant": "2023-04-06T02:05:32.668369Z"
+      }
+    ]
+  },
+  "encounter": {
+    "reference": "Encounter/e133b999-9e91-4ebd-967e-450bad770682"
+  },
+  "item": [
+    {
+      "item": [
+        {
+          "answer": [
+            {
+              "valueString": "Well nourished, well developed, awake and alert, resting comfortably in no acute distress, cooperative on exam"
+            }
+          ],
+          "linkId": "general"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "NCAT, PERRL, normal conjunctivae, nonicteric sclerae, bilateral EAC/TM clear, no nasal discharge, OP clear, moist mucous membranes"
+            }
+          ],
+          "linkId": "heent"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Supple, normal ROM, no lymphadenopathy/masses, nontender"
+            }
+          ],
+          "linkId": "neck"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "RRR, normal S1/S2, no murmurs/gallops/rub"
+            }
+          ],
+          "linkId": "cardiovascular"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "No respiratory distress, lungs CTAB: no rales, rhonchi, or wheeze"
+            }
+          ],
+          "linkId": "pulmonary"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Soft and non-tender with no guarding or rebound; +BS normoactive, no tympany on auscultation"
+            }
+          ],
+          "linkId": "abdominal"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Normal ROM of UE and LE, normal bulk and tone,"
+            }
+          ],
+          "linkId": "musculoskeletal"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Pulses intact with normal cap refill, no LE pitting edema or calf tenderness"
+            }
+          ],
+          "linkId": "extremities"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "AAOx3, converses normally. CN II - XII grossly intact. Gait and coordination intact. 5+ BL UE/LE strength, no gross motor or sensory defects"
+            }
+          ],
+          "linkId": "neurologic"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Normal mood and affect. Judgement/competence is appropriate"
+            }
+          ],
+          "linkId": "psychiatric"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Warm, dry, and intact. No rashes, dermatoses, petechiae, or lesions"
+            }
+          ],
+          "linkId": "skin"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Normal sensation bilaterally on soles of feet with 10g monofilament"
+            }
+          ],
+          "linkId": "monofilament"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "The chest wall is symmetric, without deformity, and is atraumatic in appearance"
+            }
+          ],
+          "linkId": "chest"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "External genitalia without erythema, exudate or discharge"
+            }
+          ],
+          "linkId": "genitourinary-female"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "Normal external anus and normal tone. No palpable masses, normal mucosa, brown stool. Hemoccult negative"
+            }
+          ],
+          "linkId": "rectal"
+        },
+        {
+          "answer": [
+            {
+              "valueString": "No enlarged lymph nodes of occipital, pre- and postauricular, submandibular, anterior or posterior cervical, or supraclavicular identified"
+            }
+          ],
+          "linkId": "lymphatic"
+        }
+      ],
+      "linkId": "physical-exam-group"
+    }
+  ],
+  "resourceType": "QuestionnaireResponse",
+  "source": {
+    "reference": "Patient/683e382b-fed4-433e-9b6d-a847a7953bc0"
+  },
+  "status": "completed",
+  "id": "288fd914-b836-47dd-863a-e7d86a923f28",
+  "authored": "2023-04-06T02:05:51Z"
+}