scientify 1.10.3 → 1.12.0

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Files changed (90) hide show
  1. package/README.md +22 -8
  2. package/README.zh.md +24 -10
  3. package/dist/index.d.ts.map +1 -1
  4. package/dist/index.js +16 -1
  5. package/dist/index.js.map +1 -1
  6. package/dist/src/cli/research.d.ts +10 -0
  7. package/dist/src/cli/research.d.ts.map +1 -0
  8. package/dist/src/cli/research.js +283 -0
  9. package/dist/src/cli/research.js.map +1 -0
  10. package/dist/src/commands/metabolism-status.d.ts +6 -0
  11. package/dist/src/commands/metabolism-status.d.ts.map +1 -0
  12. package/dist/src/commands/metabolism-status.js +100 -0
  13. package/dist/src/commands/metabolism-status.js.map +1 -0
  14. package/dist/src/commands.d.ts.map +1 -1
  15. package/dist/src/commands.js +63 -0
  16. package/dist/src/commands.js.map +1 -1
  17. package/dist/src/hooks/cron-skill-inject.d.ts +21 -0
  18. package/dist/src/hooks/cron-skill-inject.d.ts.map +1 -0
  19. package/dist/src/hooks/cron-skill-inject.js +53 -0
  20. package/dist/src/hooks/cron-skill-inject.js.map +1 -0
  21. package/dist/src/hooks/research-mode.d.ts.map +1 -1
  22. package/dist/src/hooks/research-mode.js +6 -1
  23. package/dist/src/hooks/research-mode.js.map +1 -1
  24. package/dist/src/knowledge-state/project.d.ts +13 -0
  25. package/dist/src/knowledge-state/project.d.ts.map +1 -0
  26. package/dist/src/knowledge-state/project.js +88 -0
  27. package/dist/src/knowledge-state/project.js.map +1 -0
  28. package/dist/src/knowledge-state/render.d.ts +63 -0
  29. package/dist/src/knowledge-state/render.d.ts.map +1 -0
  30. package/dist/src/knowledge-state/render.js +368 -0
  31. package/dist/src/knowledge-state/render.js.map +1 -0
  32. package/dist/src/knowledge-state/store.d.ts +19 -0
  33. package/dist/src/knowledge-state/store.d.ts.map +1 -0
  34. package/dist/src/knowledge-state/store.js +978 -0
  35. package/dist/src/knowledge-state/store.js.map +1 -0
  36. package/dist/src/knowledge-state/types.d.ts +182 -0
  37. package/dist/src/knowledge-state/types.d.ts.map +1 -0
  38. package/dist/src/knowledge-state/types.js +2 -0
  39. package/dist/src/knowledge-state/types.js.map +1 -0
  40. package/dist/src/literature/subscription-state.d.ts +11 -0
  41. package/dist/src/literature/subscription-state.d.ts.map +1 -1
  42. package/dist/src/literature/subscription-state.js +38 -2
  43. package/dist/src/literature/subscription-state.js.map +1 -1
  44. package/dist/src/research-subscriptions/handlers.d.ts.map +1 -1
  45. package/dist/src/research-subscriptions/handlers.js +1 -0
  46. package/dist/src/research-subscriptions/handlers.js.map +1 -1
  47. package/dist/src/research-subscriptions/parse.d.ts.map +1 -1
  48. package/dist/src/research-subscriptions/parse.js +14 -0
  49. package/dist/src/research-subscriptions/parse.js.map +1 -1
  50. package/dist/src/research-subscriptions/prompt.d.ts +1 -1
  51. package/dist/src/research-subscriptions/prompt.d.ts.map +1 -1
  52. package/dist/src/research-subscriptions/prompt.js +178 -23
  53. package/dist/src/research-subscriptions/prompt.js.map +1 -1
  54. package/dist/src/research-subscriptions/types.d.ts +1 -0
  55. package/dist/src/research-subscriptions/types.d.ts.map +1 -1
  56. package/dist/src/templates/bootstrap.d.ts +8 -0
  57. package/dist/src/templates/bootstrap.d.ts.map +1 -0
  58. package/dist/src/templates/bootstrap.js +153 -0
  59. package/dist/src/templates/bootstrap.js.map +1 -0
  60. package/dist/src/tools/arxiv-download.d.ts +2 -2
  61. package/dist/src/tools/arxiv-download.d.ts.map +1 -1
  62. package/dist/src/tools/arxiv-download.js +9 -11
  63. package/dist/src/tools/arxiv-download.js.map +1 -1
  64. package/dist/src/tools/scientify-cron.d.ts +2 -0
  65. package/dist/src/tools/scientify-cron.d.ts.map +1 -1
  66. package/dist/src/tools/scientify-cron.js +7 -0
  67. package/dist/src/tools/scientify-cron.js.map +1 -1
  68. package/dist/src/tools/scientify-literature-state.d.ts +234 -0
  69. package/dist/src/tools/scientify-literature-state.d.ts.map +1 -1
  70. package/dist/src/tools/scientify-literature-state.js +638 -3
  71. package/dist/src/tools/scientify-literature-state.js.map +1 -1
  72. package/dist/src/tools/unpaywall-download.d.ts +2 -2
  73. package/dist/src/tools/unpaywall-download.js +4 -4
  74. package/dist/src/tools/unpaywall-download.js.map +1 -1
  75. package/openclaw.plugin.json +4 -2
  76. package/package.json +1 -1
  77. package/skills/idea-generation/SKILL.md +24 -29
  78. package/skills/metabolism/SKILL.md +118 -0
  79. package/skills/metabolism-init/SKILL.md +80 -0
  80. package/skills/{literature-survey → research-collect}/SKILL.md +23 -33
  81. package/skills/research-experiment/SKILL.md +1 -1
  82. package/skills/research-implement/SKILL.md +1 -1
  83. package/skills/research-pipeline/SKILL.md +6 -11
  84. package/skills/research-plan/SKILL.md +3 -3
  85. package/skills/research-review/SKILL.md +1 -1
  86. package/skills/research-subscription/SKILL.md +18 -3
  87. package/skills/research-survey/SKILL.md +6 -6
  88. package/skills/write-review-paper/SKILL.md +14 -14
  89. package/skills/_shared/workspace-spec.md +0 -152
  90. package/skills/install-scientify/SKILL.md +0 -106
@@ -2,6 +2,7 @@ export declare const ScientifyLiteratureStateToolSchema: import("@sinclair/typeb
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  action: import("@sinclair/typebox").TString;
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  scope: import("@sinclair/typebox").TString;
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  topic: import("@sinclair/typebox").TString;
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+ project_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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  preferences: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
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  max_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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  recency_days: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
@@ -25,6 +26,122 @@ export declare const ScientifyLiteratureStateToolSchema: import("@sinclair/typeb
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  }>>;
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  source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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  tags: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ knowledge_state: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
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+ core_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
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+ read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ claim: import("@sinclair/typebox").TString;
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+ quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ }>>>;
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+ }>>>;
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+ exploration_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
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+ read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ claim: import("@sinclair/typebox").TString;
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+ quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ }>>>;
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+ }>>>;
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+ exploration_trace: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ query: import("@sinclair/typebox").TString;
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+ reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ candidates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ filtered_to: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ filtered_out_reasons: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ result_count: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ }>>>;
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+ knowledge_changes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ type: import("@sinclair/typebox").TString;
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+ statement: import("@sinclair/typebox").TString;
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+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ topic: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ }>>>;
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+ knowledge_updates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ topic: import("@sinclair/typebox").TString;
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+ op: import("@sinclair/typebox").TString;
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+ content: import("@sinclair/typebox").TString;
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+ confidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ }>>>;
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+ hypotheses: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ statement: import("@sinclair/typebox").TString;
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+ trigger: import("@sinclair/typebox").TString;
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+ dependency_path: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ novelty: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ feasibility: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ impact: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ validation_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ validation_notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ validation_evidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ }>>>;
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+ run_log: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
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+ model: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ duration_ms: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ error: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ degraded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
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+ notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ temp_full_text_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ temp_files_downloaded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ temp_cleanup_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ temp_cleanup_note: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ full_text_attempted: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ full_text_completed: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ }>>;
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+ }>>;
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  }>;
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  export declare function createScientifyLiteratureStateTool(): {
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  label: string;
@@ -34,6 +151,7 @@ export declare function createScientifyLiteratureStateTool(): {
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  action: import("@sinclair/typebox").TString;
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  scope: import("@sinclair/typebox").TString;
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  topic: import("@sinclair/typebox").TString;
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+ project_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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  preferences: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
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  max_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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  recency_days: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
@@ -57,6 +175,122 @@ export declare function createScientifyLiteratureStateTool(): {
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  }>>;
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  source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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  tags: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ knowledge_state: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
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+ core_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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+ reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
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+ read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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+ key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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+ evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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+ section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
207
+ locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
208
+ claim: import("@sinclair/typebox").TString;
209
+ quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
210
+ }>>>;
211
+ }>>>;
212
+ exploration_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
213
+ id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
214
+ title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
215
+ url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
216
+ source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
217
+ published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
218
+ score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
219
+ reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
220
+ summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
221
+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
222
+ full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
223
+ read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
224
+ full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
225
+ full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
226
+ unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
227
+ key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
228
+ domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
229
+ subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
230
+ cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
231
+ research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
232
+ approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
233
+ methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
234
+ key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
235
+ practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
236
+ must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
237
+ limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
238
+ evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
239
+ section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
240
+ locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
241
+ claim: import("@sinclair/typebox").TString;
242
+ quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
243
+ }>>>;
244
+ }>>>;
245
+ exploration_trace: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
246
+ query: import("@sinclair/typebox").TString;
247
+ reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
248
+ source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
249
+ candidates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
250
+ filtered_to: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
251
+ filtered_out_reasons: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
252
+ result_count: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
253
+ }>>>;
254
+ knowledge_changes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
255
+ type: import("@sinclair/typebox").TString;
256
+ statement: import("@sinclair/typebox").TString;
257
+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
258
+ topic: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
259
+ }>>>;
260
+ knowledge_updates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
261
+ topic: import("@sinclair/typebox").TString;
262
+ op: import("@sinclair/typebox").TString;
263
+ content: import("@sinclair/typebox").TString;
264
+ confidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
265
+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
266
+ }>>>;
267
+ hypotheses: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
268
+ id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
269
+ statement: import("@sinclair/typebox").TString;
270
+ trigger: import("@sinclair/typebox").TString;
271
+ dependency_path: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
272
+ novelty: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
273
+ feasibility: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
274
+ impact: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
275
+ evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
276
+ validation_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
277
+ validation_notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
278
+ validation_evidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
279
+ }>>>;
280
+ run_log: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
281
+ model: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
282
+ duration_ms: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
283
+ error: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
284
+ degraded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
285
+ notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
286
+ temp_full_text_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
287
+ temp_files_downloaded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
288
+ temp_cleanup_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
289
+ temp_cleanup_note: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
290
+ full_text_attempted: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
291
+ full_text_completed: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
292
+ }>>;
293
+ }>>;
60
294
  }>;
61
295
  execute: (_toolCallId: string, rawArgs: unknown) => Promise<{
62
296
  type: "tool_result";
@@ -1 +1 @@
1
- {"version":3,"file":"scientify-literature-state.d.ts","sourceRoot":"","sources":["../../../src/tools/scientify-literature-state.ts"],"names":[],"mappings":"AAiDA,eAAO,MAAM,kCAAkC;;;;;;;;;;;;;;;;;;;;;;;;;;;EAwD7C,CAAC;AAsGH,wBAAgB,kCAAkC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;2BAOjB,MAAM,WAAW,OAAO;;;;;;;;EA4KxD"}
1
+ {"version":3,"file":"scientify-literature-state.d.ts","sourceRoot":"","sources":["../../../src/tools/scientify-literature-state.ts"],"names":[],"mappings":"AAkLA,eAAO,MAAM,kCAAkC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA8D7C,CAAC;AAqpBH,wBAAgB,kCAAkC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;2BAOjB,MAAM,WAAW,OAAO;;;;;;;;EA2PxD"}