react-msaview 7.0.0 → 8.1.0

package/dist/components/msa/msaRaster.js

@@ -16,9 +16,8 @@ let scratch;
 const colorCache = new Map();
 /**
  * CSS color string -> the packed pixel an ImageData holds for it. Painting a 1x1
- * canvas and reading it back handles every form a color scheme can produce --
- * hex, rgb(), hsl(), named -- without a parser of our own, and the cache means
- * each distinct color is resolved once per session rather than once per cell.
+ * canvas and reading it back parses hex, rgb(), hsl() and named colors; the
+ * cache resolves each distinct color once per session.
  */
 export function cssColorToPixel(css) {
     const hit = colorCache.get(css);
@@ -58,13 +57,12 @@ function cellPixelFn(spec, toPixel) {
 /**
  * Packs a rectangle of the alignment into one pixel per cell, in `rowNames`
  * order, ready to hand to putImageData. Cells past the end of a row, and rows
- * with no sequence at all, stay transparent -- what the per-cell tile painter
- * also leaves behind.
+ * with no sequence, stay transparent, as in the per-cell painter.
  *
- * `colStep`/`rowStep` sample instead of covering, which is how the minimap fits
- * a whole alignment into a 12px bar. `colSpan`/`rowSpan` average each block of
- * that many cells into one pixel instead, so a zoom below a device pixel per
- * column still shows every column's color without blending neighbouring rows.
+ * `colStep`/`rowStep` sample every nth cell, which fits a whole alignment into
+ * the minimap's 12px bar. `colSpan`/`rowSpan` average each block of that many
+ * cells into one pixel, so a zoom below a device pixel per column still shows
+ * every column's color without blending neighbouring rows.
  */
 export function rasterPixels({ spec, col0, row0, width, height, colStep = 1, rowStep = 1, colSpan = 1, rowSpan = 1, toPixel = cssColorToPixel, out = new Uint32Array(width * height), }) {
     if (colSpan > 1 || rowSpan > 1) {
@@ -195,8 +193,8 @@ export function rasterSupported() {
     return supported;
 }
 const caches = new WeakMap();
-// Everything a cell's color depends on. A change to any of them makes every
-// cached tile stale, which a fresh cache expresses without tracking which.
+// Everything a cell's color depends on; a change to any of them starts a fresh
+// cache.
 function rasterKeys(model, theme) {
     return [
         model.columns,
@@ -283,13 +281,12 @@ function getTile({ cache, tileRow, tileCol, colSpan, rowSpan, }) {
 /**
  * Paints the alignment background of one MSA block from cached
  * one-pixel-per-cell tiles. The tiles do not depend on the zoom level, so a zoom
- * frame costs a handful of drawImage calls instead of a fillRect per visible
- * cell -- which ran to 885ms per block at the minimum column width.
+ * frame costs a handful of drawImage calls. A fillRect per visible cell measured
+ * 885ms per block at the minimum column width.
  *
- * Below a device pixel per cell the tiles average cells together instead, and
- * only along the axis that needs it. Leaving the downsampling to the browser's
- * image smoothing blurred both axes at once: at fit-to-width, where only the
- * columns are narrow, every row boundary turned into a gradient.
+ * Below a device pixel per cell the tiles average cells together, per axis.
+ * The browser's image smoothing blurs both axes, which turns every row
+ * boundary into a gradient at fit-to-width, where only the columns are narrow.
  */
 export function drawMsaRaster({ ctx, model, theme, offsetX, offsetY, }) {
     const { colWidth, rowHeight, blockSize, highResScaleFactor } = model;
@@ -322,12 +319,11 @@ export function drawMsaRaster({ ctx, model, theme, offsetX, offsetY, }) {
 /**
  * A raster canvas as a PNG data URI, for embedding in the SVG export.
  *
- * toDataURL is the synchronous read-back. The DOM canvas has it, and so does a
- * node canvas standing in for OffscreenCanvas headlessly; a browser
- * OffscreenCanvas -- which is what the tile and thumbnail caches hold wherever
- * it exists -- gets copied onto a DOM canvas first. Returns undefined wherever
- * the read-back is unavailable (jsdom) rather than throwing, which is the
- * signal to fall back to drawing the thing in vector.
+ * toDataURL is the synchronous read-back. The DOM canvas and a headless node
+ * canvas have it; a browser OffscreenCanvas, which the tile and thumbnail
+ * caches hold where it exists, is copied onto a DOM canvas first. Returns
+ * undefined where read-back is unavailable (jsdom), and the caller then draws
+ * in vector.
  */
 export function canvasHref(canvas) {
     if (!canvas) {
@@ -354,26 +350,22 @@ export function canvasHref(canvas) {
         return undefined;
     }
 }
-// A canvas much past this many pixels fails to allocate, and the browser's own
-// per-side limit is lower still, so a raster bigger than either averages down,
-// per axis: an alignment wide enough to hit the limit on columns alone keeps
-// every row.
-// The result is still drawn across the same rectangle -- it loses cell-exact
-// detail at a size where no figure could show it anyway.
+// A canvas much past this many pixels fails to allocate, and the browser's
+// per-side limit is lower still, so a larger raster averages down per axis and
+// is drawn across the same rectangle. An alignment that hits the limit on
+// columns alone keeps every row.
 const maxImagePixels = 64e6;
 const maxImageSide = 16384;
 /**
  * The alignment rectangle [col0, col0+numCols) x [row0, row0+numRows) as a PNG
  * data URI, for the SVG export.
  *
- * SVG has no blit, so the export cannot reuse the tile cache the live canvas
- * draws from: one <image> is the whole background instead. That is the
- * difference between an export that scales and one that does not -- the vector
- * path emits a <rect> per cell, and a 200x500 alignment exhausts the heap
- * building them.
+ * SVG has no blit, so the export draws the whole background as one <image>. The
+ * vector path emits a <rect> per cell, and a 200x500 alignment exhausts the
+ * heap building them.
  *
- * Returns undefined wherever a canvas cannot be read back (jsdom, notably),
- * which is the signal to keep the per-cell path.
+ * Returns undefined where a canvas cannot be read back (jsdom), and the caller
+ * then keeps the per-cell path.
  */
 export function rasterImageHref({ model, theme, col0, row0, numCols, numRows, }) {
     if (numCols <= 0 || numRows <= 0 || typeof document === 'undefined') {
@@ -413,9 +405,8 @@ export function rasterImageHref({ model, theme, col0, row0, numCols, numRows, })
     }));
 }
 /**
- * The whole alignment sampled down to a strip small enough to sit behind the
- * minimap thumb, cached alongside the block tiles because it goes stale under
- * exactly the same conditions.
+ * The whole alignment sampled down to a strip behind the minimap thumb, cached
+ * with the block tiles since the same keys invalidate both.
  */
 export function msaThumbnail({ model, theme, height, }) {
     const cache = getCache(model, theme);

package/dist/components/msa/msaRaster.js.map

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package/dist/components/msa/packDomainLanes.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Assigns each of one row's bands a lane: the first lane whose last band ends
+ * before this one starts, so only bands that actually overlap stack. A row of
+ * adjacent exons packs into a single lane; a family with a domain nested inside
+ * it takes two.
+ *
+ * Packing runs left to right, but the result keeps the input's largest-first
+ * paint order. `laneCount` is the row's depth, which the renderer divides the
+ * row height by so a deep stack stays inside its own row.
+ *
+ * The coordinates are whatever the caller packs in: alignment columns for the
+ * overlay, residue positions for a `features` row panel.
+ */
+export declare function packDomainLanes<T extends {
+    startCol: number;
+    endCol: number;
+}>(bands: T[]): (T & {
+    lane: number;
+    laneCount: number;
+})[];

package/dist/components/msa/packDomainLanes.js

@@ -0,0 +1,33 @@
+/**
+ * Assigns each of one row's bands a lane: the first lane whose last band ends
+ * before this one starts, so only bands that actually overlap stack. A row of
+ * adjacent exons packs into a single lane; a family with a domain nested inside
+ * it takes two.
+ *
+ * Packing runs left to right, but the result keeps the input's largest-first
+ * paint order. `laneCount` is the row's depth, which the renderer divides the
+ * row height by so a deep stack stays inside its own row.
+ *
+ * The coordinates are whatever the caller packs in: alignment columns for the
+ * overlay, residue positions for a `features` row panel.
+ */
+export function packDomainLanes(bands) {
+    const laneEnds = [];
+    const lanes = new Array(bands.length);
+    const byStart = bands
+        .map((_, i) => i)
+        .sort((a, b) => bands[a].startCol - bands[b].startCol);
+    for (const i of byStart) {
+        const { startCol, endCol } = bands[i];
+        const found = laneEnds.findIndex(end => end <= startCol);
+        const lane = found === -1 ? laneEnds.length : found;
+        laneEnds[lane] = endCol;
+        lanes[i] = lane;
+    }
+    return bands.map((band, i) => ({
+        ...band,
+        lane: lanes[i],
+        laneCount: laneEnds.length,
+    }));
+}
+//# sourceMappingURL=packDomainLanes.js.map

package/dist/components/msa/packDomainLanes.js.map

@@ -0,0 +1 @@
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package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts

@@ -1,9 +1,11 @@
 import type { MsaViewModel } from '../../model.ts';
 import type { RenderCtx } from '../renderCtx.ts';
-export declare function renderBoxFeatureCanvasBlock({ model, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }: {
+import type { Theme } from '@mui/material';
+export declare function renderBoxFeatureCanvasBlock({ model, theme, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }: {
     offsetX: number;
     offsetY: number;
     model: MsaViewModel;
+    theme: Theme;
     ctx: RenderCtx;
     highResScaleFactorOverride?: number;
     blockSizeXOverride?: number;

package/dist/components/msa/renderBoxFeatureCanvasBlock.js

@@ -1,98 +1,61 @@
-import { subFeatureRowHeight } from '../../constants.js';
+import { domainUnderlineHeight, subFeatureRowHeight } from '../../constants.js';
+import { contrastTextFn } from '../../util.js';
 import { getVisibleLeaves } from '../getVisibleLeaves.js';
-export function renderBoxFeatureCanvasBlock({ model, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
-    const { blockSize, rowHeight, highResScaleFactor, actuallyShowDomains } = model;
-    if (actuallyShowDomains) {
-        const k = highResScaleFactorOverride ?? highResScaleFactor;
-        const bx = blockSizeXOverride ?? blockSize;
-        const by = blockSizeYOverride ?? blockSize;
-        ctx.resetTransform();
-        ctx.scale(k, k);
-        ctx.translate(-offsetX, rowHeight / 2 - offsetY);
-        drawTiles({
-            model,
-            ctx,
-            visibleLeaves: getVisibleLeaves({ model, offsetY, blockSizeY: by }),
-            offsetX,
-            blockWidth: bx,
-        });
+import { drawFeatureSpans, spanRows } from './drawFeatureSpans.js';
+export function renderBoxFeatureCanvasBlock({ model, theme, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
+    const { blockSize, rowHeight, highResScaleFactor, actuallyShowDomains, subFeatureRows, colWidth, featureColors, featureLabels, segmentLabels, showMsaLetters, domainUnderline, domainBands, } = model;
+    if (!actuallyShowDomains) {
+        return;
     }
-}
-function drawTiles({ model, ctx, visibleLeaves, offsetX, blockWidth, }) {
-    const { subFeatureRows, colWidth, rowHeight, fillPalette, strokePalette, segmentLabels, showMsaLetters, domainBands, } = model;
-    const h = subFeatureRows ? subFeatureRowHeight : rowHeight;
+    const k = highResScaleFactorOverride ?? highResScaleFactor;
+    const bx = blockSizeXOverride ?? blockSize;
+    const by = blockSizeYOverride ?? blockSize;
+    ctx.resetTransform();
+    ctx.scale(k, k);
+    ctx.translate(-offsetX, rowHeight / 2 - offsetY);
+    // the plain and underline modes give every band the same height; a sub-row
+    // band is thinner, and how thin depends on how many lanes its row needs
+    const barHeight = domainUnderline
+        ? Math.min(domainUnderlineHeight, rowHeight)
+        : rowHeight;
     // exon numbers label the bands only when residue letters aren't drawn (zoomed
     // out); when letters show, the alternating shades alone mark the boundaries
-    // and a number would collide with the sequence
-    const drawSegmentLabels = !showMsaLetters && !subFeatureRows && h >= 9;
-    // gene arrow heads stick out one row-height past the band, so pad the cull
-    // window enough that a band just outside the block still draws its head
-    const cull = h + colWidth;
-    const xMin = offsetX - cull;
-    const xMax = offsetX + blockWidth + cull;
+    // and a number would collide with the sequence. A featureLabel encoding names
+    // what every span carries instead
+    const drawSegmentLabels = !featureLabels && !showMsaLetters && !subFeatureRows;
     // a segment (exon) number labels its band once per block, on the topmost
     // visible row carrying that segment, so it reads as a column header for the
     // whole band. Keyed by accession rather than drawn on row 0, because the rows
     // carrying the gene model are often not the first ones in the alignment
     const labelled = drawSegmentLabels ? new Set() : undefined;
-    for (const node of visibleLeaves) {
-        const y = node.x;
-        const bands = domainBands.get(node.data.name);
-        if (bands) {
-            for (const { annotation, startCol, endCol, stackIndex } of bands) {
-                const { accession, strand } = annotation;
-                const x = startCol * colWidth;
-                const lw = colWidth * (endCol - startCol);
-                if (x + lw >= xMin && x <= xMax) {
-                    const t = y - rowHeight + (subFeatureRows ? stackIndex * h : 0);
-                    ctx.fillStyle = fillPalette[accession];
-                    ctx.strokeStyle = strokePalette[accession];
-                    if (strand === undefined) {
-                        ctx.fillRect(x, t, lw, h);
-                        ctx.strokeRect(x, t, lw, h);
-                        const label = labelled && !labelled.has(accession)
-                            ? segmentLabels.get(accession)
-                            : undefined;
-                        if (label !== undefined) {
-                            const fontSize = Math.min(h - 2, 11);
-                            ctx.font = `${fontSize}px sans-serif`;
-                            if (ctx.measureText(label).width + 2 <= lw) {
-                                labelled.add(accession);
-                                ctx.fillStyle = '#222';
-                                ctx.textAlign = 'center';
-                                ctx.textBaseline = 'middle';
-                                ctx.fillText(label, x + lw / 2, t + h / 2);
-                            }
-                        }
-                    }
-                    else {
-                        drawGeneArrow({ ctx, x, t, w: lw, h, strand });
-                    }
-                }
-            }
-        }
-    }
-}
-// A gene arrow: a full-width rectangular body spanning the feature's
-// start..end columns, plus a triangular head that points *beyond* that end in
-// the strand direction (right for +, left for -). Keeping the body aligned to
-// the exact start/end columns means + and - strand features read as having the
-// same boundaries; the arrow lives outside them purely to show transcription
-// direction, preserving the column-by-column homology down the rows.
-function drawGeneArrow({ ctx, x, t, w, h, strand, }) {
-    // body spans bodyStart..bodyEnd (the exact columns); the head extends one
-    // row-height past bodyEnd in the strand direction
-    const dir = strand > 0 ? 1 : -1;
-    const bodyStart = strand > 0 ? x : x + w;
-    const bodyEnd = strand > 0 ? x + w : x;
-    ctx.beginPath();
-    ctx.moveTo(bodyStart, t);
-    ctx.lineTo(bodyEnd, t);
-    ctx.lineTo(bodyEnd + dir * h, t + h / 2);
-    ctx.lineTo(bodyEnd, t + h);
-    ctx.lineTo(bodyStart, t + h);
-    ctx.closePath();
-    ctx.fill();
-    ctx.stroke();
+    drawFeatureSpans({
+        ctx,
+        rows: spanRows(getVisibleLeaves({ model, offsetY, blockSizeY: by }), domainBands),
+        layout: {
+            // sub-rows are thin, but a row whose lanes would spill onto the row below
+            // shares out the row height between them instead
+            height: laneCount => subFeatureRows
+                ? Math.min(subFeatureRowHeight, rowHeight / laneCount)
+                : barHeight,
+            top: (y, lane, h) => y -
+                rowHeight +
+                (subFeatureRows ? lane * h : domainUnderline ? rowHeight - h : 0),
+            headLength: h => (domainUnderline ? rowHeight / 2 : h),
+            // a head only as tall as an underline bar tapers over ten pixels of
+            // three, which reads as nothing; it takes the lower two fifths of the
+            // row instead, leaving the letters above it
+            headRise: h => (domainUnderline ? Math.max(0, rowHeight * 0.4 - h) : 0),
+        },
+        xOf: band => [band.startCol * colWidth, band.endCol * colWidth],
+        colors: featureColors,
+        labelOf: band => featureLabels?.get(band.annotation) ??
+            (labelled && !labelled.has(band.annotation.accession)
+                ? segmentLabels.get(band.annotation.accession)
+                : undefined),
+        labelDrawn: band => labelled?.add(band.annotation.accession),
+        contrastText: contrastTextFn(theme),
+        xMin: offsetX,
+        xMax: offsetX + bx,
+    });
 }
 //# sourceMappingURL=renderBoxFeatureCanvasBlock.js.map

package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map

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package/dist/components/msa/renderHighlights.d.ts

@@ -16,11 +16,9 @@ export interface LabelBox {
  * A highlight's label, over its band where it fits and beside it where it does
  * not, kept inside `bounds` and out of the way of the labels already placed.
  *
- * Two single-residue highlights a column apart both want the same few pixels to
- * the right of their bands, and a band scrolled off the left edge wants its
- * label off-frame with it: the first overdrew two labels into an unreadable
- * smudge, the second left the visible band untitled. Pass `placed` and each
- * later label steps down a row instead of over the one before.
+ * `bounds` keeps the label of a band scrolled partly off the left edge visible.
+ * With `placed`, a label that would overlap an earlier one, as two
+ * single-residue highlights a column apart do, steps down a row.
  */
 export declare function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, bounds, placed, }: {
     ctx: RenderCtx;
@@ -36,11 +34,16 @@ export declare function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth,
     placed?: LabelBox[];
 }): void;
 /**
- * The persistent `highlights` overlay on the alignment: row tints, bordered
- * column bands, and a label above each band. `offsetX`/`offsetY` are the
- * content coordinates at the canvas origin, the convention renderMSABlock
+ * The persistent overlay on the alignment: the band behind each clade of
+ * `clades`, the `rowTint` encoding's wash, the row tints and bordered column
+ * bands of `highlights`, and a label above each band. `offsetX`/`offsetY` are
+ * the content coordinates at the canvas origin, the convention renderMSABlock
  * uses, so the live overlay passes -scrollX/-scrollY and the export passes its
  * layout offsets.
+ *
+ * Rows are culled to the ones this block covers. A tint over every row of a
+ * large alignment would otherwise draw the whole column of rects in each block,
+ * and again on every pointer move through renderMouseover.
  */
 export declare function renderHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }: {
     ctx: RenderCtx;
@@ -52,11 +55,10 @@ export declare function renderHighlights({ ctx, model, theme, offsetX, offsetY,
     height: number;
 }): void;
 /**
- * Everything the alignment overlay owes to the document rather than to the
- * mouse: the reference row's tint, a bordered band per run of highlighted
- * columns, and the `highlights` layer. The live overlay canvas draws these
- * under its hover and click bands, and the SVG export draws them and stops --
- * a shared link that opens with columns highlighted exports with them too.
+ * The overlay parts that come from the snapshot: the reference row's tint, a
+ * bordered band per run of highlighted columns, and the `highlights` layer. The
+ * live overlay draws these under its hover and click bands; the SVG export
+ * draws only these.
  */
 export declare function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }: {
     ctx: RenderCtx;

package/dist/components/msa/renderHighlights.js

@@ -1,25 +1,22 @@
 import { setFontSize } from '../../setFontSize.js';
 import { referenceColor } from '../overlayColors.js';
-// a stronger fill plus a solid border, so a domain/motif band reads clearly over
-// the colored alignment cells (the faint hover-style wash alone is invisible
-// against clustalx coloring)
+// a fill plus a solid border; the hover wash alone is invisible over clustalx
+// coloring
 export const highlightFill = 'rgba(255,140,0,0.28)';
 export const highlightBorder = 'rgba(210,90,0,0.95)';
 export const highlightRowFill = 'rgba(255,140,0,0.18)';
 export const labelFontSize = 11;
 const labelPad = 3;
-// the label box a highlight draws above its band, and the reason a tree block
-// has to consider rows a little outside itself
+// the label box above a highlight band; tree blocks also check rows this far
+// outside themselves
 export const highlightLabelHeight = labelFontSize + labelPad * 2;
 /**
  * A highlight's label, over its band where it fits and beside it where it does
  * not, kept inside `bounds` and out of the way of the labels already placed.
  *
- * Two single-residue highlights a column apart both want the same few pixels to
- * the right of their bands, and a band scrolled off the left edge wants its
- * label off-frame with it: the first overdrew two labels into an unreadable
- * smudge, the second left the visible band untitled. Pass `placed` and each
- * later label steps down a row instead of over the one before.
+ * `bounds` keeps the label of a band scrolled partly off the left edge visible.
+ * With `placed`, a label that would overlap an earlier one, as two
+ * single-residue highlights a column apart do, steps down a row.
  */
 export function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, bounds, placed, }) {
     setFontSize(ctx, labelFontSize);
@@ -47,20 +44,47 @@ export function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, bounds,
     ctx.fillText(label, left + labelPad, top + labelPad + labelFontSize - 2);
 }
 /**
- * The persistent `highlights` overlay on the alignment: row tints, bordered
- * column bands, and a label above each band. `offsetX`/`offsetY` are the
- * content coordinates at the canvas origin, the convention renderMSABlock
+ * The persistent overlay on the alignment: the band behind each clade of
+ * `clades`, the `rowTint` encoding's wash, the row tints and bordered column
+ * bands of `highlights`, and a label above each band. `offsetX`/`offsetY` are
+ * the content coordinates at the canvas origin, the convention renderMSABlock
  * uses, so the live overlay passes -scrollX/-scrollY and the export passes its
  * layout offsets.
+ *
+ * Rows are culled to the ones this block covers. A tint over every row of a
+ * large alignment would otherwise draw the whole column of rects in each block,
+ * and again on every pointer move through renderMouseover.
  */
 export function renderHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }) {
-    const { resolvedHighlights, colWidth, rowHeight } = model;
+    const { resolvedClades, resolvedHighlights, rowTints, colWidth, rowHeight } = model;
     const placed = [];
     ctx.lineWidth = 2;
+    const firstRow = Math.max(0, Math.floor(offsetY / rowHeight));
+    const lastRow = Math.ceil((offsetY + height) / rowHeight);
+    const fillRow = (index) => {
+        ctx.fillRect(0, index * rowHeight - offsetY, width, rowHeight);
+    };
+    for (const { rows, color, mark } of resolvedClades) {
+        if (mark === 'highlight' && rows[1] >= firstRow && rows[0] <= lastRow) {
+            ctx.fillStyle = color;
+            ctx.fillRect(0, rows[0] * rowHeight - offsetY, width, (rows[1] - rows[0] + 1) * rowHeight);
+        }
+    }
+    if (rowTints) {
+        for (let index = firstRow; index <= Math.min(lastRow, rowTints.length - 1); index++) {
+            const color = rowTints[index];
+            if (color) {
+                ctx.fillStyle = color;
+                fillRow(index);
+            }
+        }
+    }
     for (const { rowIndices, color } of resolvedHighlights) {
         ctx.fillStyle = color ?? highlightRowFill;
         for (const index of rowIndices) {
-            ctx.fillRect(0, index * rowHeight - offsetY, width, rowHeight);
+            if (index >= firstRow && index <= lastRow) {
+                fillRow(index);
+            }
         }
     }
     for (const { startCol, endCol, label, color } of resolvedHighlights) {
@@ -88,11 +112,10 @@ export function renderHighlights({ ctx, model, theme, offsetX, offsetY, width, h
     }
 }
 /**
- * Everything the alignment overlay owes to the document rather than to the
- * mouse: the reference row's tint, a bordered band per run of highlighted
- * columns, and the `highlights` layer. The live overlay canvas draws these
- * under its hover and click bands, and the SVG export draws them and stops --
- * a shared link that opens with columns highlighted exports with them too.
+ * The overlay parts that come from the snapshot: the reference row's tint, a
+ * bordered band per run of highlighted columns, and the `highlights` layer. The
+ * live overlay draws these under its hover and click bands; the SVG export
+ * draws only these.
  */
 export function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }) {
     const { colWidth, rowHeight, referenceRowIndex, highlightedColumnRuns } = model;