react-msaview 7.0.0 → 8.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (335) hide show
  1. package/README.md +11 -10
  2. package/bundle/index.js +122 -111
  3. package/bundle/index.js.map +4 -4
  4. package/dist/calculateBlocks.js +5 -3
  5. package/dist/calculateBlocks.js.map +1 -1
  6. package/dist/colorSchemes.js +1 -2
  7. package/dist/colorSchemes.js.map +1 -1
  8. package/dist/columnStats.d.ts +28 -0
  9. package/dist/columnStats.js +34 -0
  10. package/dist/columnStats.js.map +1 -0
  11. package/dist/components/DragHandle.d.ts +3 -2
  12. package/dist/components/DragHandle.js +11 -5
  13. package/dist/components/DragHandle.js.map +1 -1
  14. package/dist/components/Loading.js +2 -8
  15. package/dist/components/Loading.js.map +1 -1
  16. package/dist/components/MSAView.js +17 -6
  17. package/dist/components/MSAView.js.map +1 -1
  18. package/dist/components/MSAViewer.d.ts +64 -7
  19. package/dist/components/MSAViewer.js +128 -23
  20. package/dist/components/MSAViewer.js.map +1 -1
  21. package/dist/components/PortalTooltip.d.ts +11 -0
  22. package/dist/components/PortalTooltip.js +29 -0
  23. package/dist/components/PortalTooltip.js.map +1 -0
  24. package/dist/components/ResizeHandles.js +11 -29
  25. package/dist/components/ResizeHandles.js.map +1 -1
  26. package/dist/components/SequenceTextArea.js +3 -4
  27. package/dist/components/SequenceTextArea.js.map +1 -1
  28. package/dist/components/Track.js +43 -24
  29. package/dist/components/Track.js.map +1 -1
  30. package/dist/components/dialogs/AboutDialog.js +6 -6
  31. package/dist/components/dialogs/AboutDialog.js.map +1 -1
  32. package/dist/components/dialogs/AnnotationFileDialog.js +5 -2
  33. package/dist/components/dialogs/AnnotationFileDialog.js.map +1 -1
  34. package/dist/components/dialogs/ExportSVGDialog.js +6 -4
  35. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
  36. package/dist/components/dialogs/FeatureDialog.js +8 -3
  37. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  38. package/dist/components/dialogs/TrackInfoDialog.js +1 -1
  39. package/dist/components/dialogs/TrackInfoDialog.js.map +1 -1
  40. package/dist/components/header/GappynessSlider.js +6 -11
  41. package/dist/components/header/GappynessSlider.js.map +1 -1
  42. package/dist/components/header/Header.js +4 -1
  43. package/dist/components/header/Header.js.map +1 -1
  44. package/dist/components/header/LoadWarnings.js +6 -23
  45. package/dist/components/header/LoadWarnings.js.map +1 -1
  46. package/dist/components/header/ScrollZoomIcons.d.ts +6 -0
  47. package/dist/components/header/ScrollZoomIcons.js +35 -0
  48. package/dist/components/header/ScrollZoomIcons.js.map +1 -0
  49. package/dist/components/header/TreeSettingsMenu.js +1 -3
  50. package/dist/components/header/TreeSettingsMenu.js.map +1 -1
  51. package/dist/components/header/UnshareableDataWarning.js +2 -4
  52. package/dist/components/header/UnshareableDataWarning.js.map +1 -1
  53. package/dist/components/header/ZoomControls.js +49 -6
  54. package/dist/components/header/ZoomControls.js.map +1 -1
  55. package/dist/components/header/getAnnotationsMenu.js +3 -6
  56. package/dist/components/header/getAnnotationsMenu.js.map +1 -1
  57. package/dist/components/header/settingsMenuItems.js +12 -9
  58. package/dist/components/header/settingsMenuItems.js.map +1 -1
  59. package/dist/components/import/ImportForm.js +1 -1
  60. package/dist/components/import/ImportForm.js.map +1 -1
  61. package/dist/components/import/util.js +1 -2
  62. package/dist/components/import/util.js.map +1 -1
  63. package/dist/components/minimap/Minimap.js +1 -2
  64. package/dist/components/minimap/Minimap.js.map +1 -1
  65. package/dist/components/msa/AnnotationLegend.js +27 -19
  66. package/dist/components/msa/AnnotationLegend.js.map +1 -1
  67. package/dist/components/msa/MSACanvas.js +2 -4
  68. package/dist/components/msa/MSACanvas.js.map +1 -1
  69. package/dist/components/msa/MSACanvasBlock.js +13 -15
  70. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  71. package/dist/components/msa/MSAMouseoverCanvas.js +2 -1
  72. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
  73. package/dist/components/msa/domainBandCursor.d.ts +7 -11
  74. package/dist/components/msa/domainBandCursor.js +7 -11
  75. package/dist/components/msa/domainBandCursor.js.map +1 -1
  76. package/dist/components/msa/drawFeatureSpans.d.ts +59 -0
  77. package/dist/components/msa/drawFeatureSpans.js +113 -0
  78. package/dist/components/msa/drawFeatureSpans.js.map +1 -0
  79. package/dist/components/msa/legendRows.d.ts +8 -0
  80. package/dist/components/msa/legendRows.js +16 -0
  81. package/dist/components/msa/legendRows.js.map +1 -0
  82. package/dist/components/msa/msaRaster.d.ts +24 -31
  83. package/dist/components/msa/msaRaster.js +30 -39
  84. package/dist/components/msa/msaRaster.js.map +1 -1
  85. package/dist/components/msa/packDomainLanes.d.ts +20 -0
  86. package/dist/components/msa/packDomainLanes.js +33 -0
  87. package/dist/components/msa/packDomainLanes.js.map +1 -0
  88. package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +3 -1
  89. package/dist/components/msa/renderBoxFeatureCanvasBlock.js +50 -87
  90. package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
  91. package/dist/components/msa/renderHighlights.d.ts +15 -13
  92. package/dist/components/msa/renderHighlights.js +43 -20
  93. package/dist/components/msa/renderHighlights.js.map +1 -1
  94. package/dist/components/msa/renderMSABlock.js +12 -12
  95. package/dist/components/msa/renderMSABlock.js.map +1 -1
  96. package/dist/components/msa/tileColor.js +4 -7
  97. package/dist/components/msa/tileColor.js.map +1 -1
  98. package/dist/components/msa/useMsaBlockMouse.d.ts +5 -3
  99. package/dist/components/msa/useMsaBlockMouse.js +6 -6
  100. package/dist/components/msa/useMsaBlockMouse.js.map +1 -1
  101. package/dist/components/rowpanels/RowPanelBlock.d.ts +9 -0
  102. package/dist/components/rowpanels/RowPanelBlock.js +86 -0
  103. package/dist/components/rowpanels/RowPanelBlock.js.map +1 -0
  104. package/dist/components/rowpanels/RowPanelHeaders.d.ts +12 -0
  105. package/dist/components/rowpanels/RowPanelHeaders.js +38 -0
  106. package/dist/components/rowpanels/RowPanelHeaders.js.map +1 -0
  107. package/dist/components/{msa/ColumnStats.d.ts → rowpanels/RowPanels.d.ts} +2 -2
  108. package/dist/components/rowpanels/RowPanels.js +32 -0
  109. package/dist/components/rowpanels/RowPanels.js.map +1 -0
  110. package/dist/components/rowpanels/headerLayout.d.ts +1 -0
  111. package/dist/components/rowpanels/headerLayout.js +5 -0
  112. package/dist/components/rowpanels/headerLayout.js.map +1 -0
  113. package/dist/components/rowpanels/renderFeaturePanel.d.ts +21 -0
  114. package/dist/components/rowpanels/renderFeaturePanel.js +37 -0
  115. package/dist/components/rowpanels/renderFeaturePanel.js.map +1 -0
  116. package/dist/components/rowpanels/renderRowPanel.d.ts +23 -0
  117. package/dist/components/rowpanels/renderRowPanel.js +22 -0
  118. package/dist/components/rowpanels/renderRowPanel.js.map +1 -0
  119. package/dist/components/rowpanels/renderStrip.d.ts +20 -0
  120. package/dist/components/rowpanels/renderStrip.js +26 -0
  121. package/dist/components/rowpanels/renderStrip.js.map +1 -0
  122. package/dist/components/tracks/TrackBlocks.js +3 -5
  123. package/dist/components/tracks/TrackBlocks.js.map +1 -1
  124. package/dist/components/tracks/TrackTooltipContent.d.ts +15 -0
  125. package/dist/components/tracks/TrackTooltipContent.js +109 -0
  126. package/dist/components/tracks/TrackTooltipContent.js.map +1 -0
  127. package/dist/components/tracks/drawTracks.d.ts +4 -4
  128. package/dist/components/tracks/drawTracks.js +25 -39
  129. package/dist/components/tracks/drawTracks.js.map +1 -1
  130. package/dist/components/tracks/useTrackHover.d.ts +22 -0
  131. package/dist/components/tracks/useTrackHover.js +30 -0
  132. package/dist/components/tracks/useTrackHover.js.map +1 -0
  133. package/dist/components/tree/CladeLabels.d.ts +12 -0
  134. package/dist/components/tree/CladeLabels.js +48 -0
  135. package/dist/components/tree/CladeLabels.js.map +1 -0
  136. package/dist/components/tree/TreeBranchMenu.js +1 -1
  137. package/dist/components/tree/TreeBranchMenu.js.map +1 -1
  138. package/dist/components/tree/TreeCanvas.js +5 -4
  139. package/dist/components/tree/TreeCanvas.js.map +1 -1
  140. package/dist/components/tree/TreeCanvasBlock.js +4 -21
  141. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  142. package/dist/components/tree/TreeNodeMenu.js +1 -1
  143. package/dist/components/tree/TreeNodeMenu.js.map +1 -1
  144. package/dist/components/tree/TreeOverview.d.ts +14 -0
  145. package/dist/components/tree/TreeOverview.js +75 -0
  146. package/dist/components/tree/TreeOverview.js.map +1 -0
  147. package/dist/components/tree/TreeRuler.js +9 -13
  148. package/dist/components/tree/TreeRuler.js.map +1 -1
  149. package/dist/components/tree/cladeBrackets.d.ts +25 -0
  150. package/dist/components/tree/cladeBrackets.js +51 -0
  151. package/dist/components/tree/cladeBrackets.js.map +1 -0
  152. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js +2 -2
  153. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js.map +1 -1
  154. package/dist/components/tree/renderTreeCanvas.js +160 -25
  155. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  156. package/dist/components/tree/renderTreeOverview.d.ts +52 -0
  157. package/dist/components/tree/renderTreeOverview.js +138 -0
  158. package/dist/components/tree/renderTreeOverview.js.map +1 -0
  159. package/dist/components/tree/useTreeHover.js +2 -4
  160. package/dist/components/tree/useTreeHover.js.map +1 -1
  161. package/dist/constants.d.ts +16 -0
  162. package/dist/constants.js +52 -22
  163. package/dist/constants.js.map +1 -1
  164. package/dist/createPaletteMap.d.ts +7 -6
  165. package/dist/createPaletteMap.js +10 -9
  166. package/dist/createPaletteMap.js.map +1 -1
  167. package/dist/element.d.ts +13 -0
  168. package/dist/element.js +269 -0
  169. package/dist/element.js.map +1 -0
  170. package/dist/featureFields.d.ts +11 -0
  171. package/dist/featureFields.js +17 -0
  172. package/dist/featureFields.js.map +1 -0
  173. package/dist/flatToTree.js +1 -2
  174. package/dist/flatToTree.js.map +1 -1
  175. package/dist/ggplotPalettes.d.ts +10 -0
  176. package/dist/ggplotPalettes.js +58 -0
  177. package/dist/ggplotPalettes.js.map +1 -1
  178. package/dist/hierarchy.d.ts +27 -0
  179. package/dist/hierarchy.js +66 -9
  180. package/dist/hierarchy.js.map +1 -1
  181. package/dist/index.d.ts +9 -1
  182. package/dist/index.js +5 -3
  183. package/dist/index.js.map +1 -1
  184. package/dist/model/DataModel.js +2 -5
  185. package/dist/model/DataModel.js.map +1 -1
  186. package/dist/model/msaModel.d.ts +3 -2
  187. package/dist/model/msaModel.js +3 -2
  188. package/dist/model/msaModel.js.map +1 -1
  189. package/dist/model/treeModel.d.ts +30 -0
  190. package/dist/model/treeModel.js +37 -1
  191. package/dist/model/treeModel.js.map +1 -1
  192. package/dist/model.d.ts +549 -294
  193. package/dist/model.js +1412 -621
  194. package/dist/model.js.map +1 -1
  195. package/dist/mount.d.ts +11 -0
  196. package/dist/mount.js +22 -0
  197. package/dist/mount.js.map +1 -0
  198. package/dist/neighborJoining.js +8 -32
  199. package/dist/neighborJoining.js.map +1 -1
  200. package/dist/renderToStaticMarkup.d.ts +10 -19
  201. package/dist/renderToStaticMarkup.js +13 -24
  202. package/dist/renderToStaticMarkup.js.map +1 -1
  203. package/dist/renderToSvg.js +180 -56
  204. package/dist/renderToSvg.js.map +1 -1
  205. package/dist/rowCoordinateCalculations.d.ts +4 -6
  206. package/dist/rowCoordinateCalculations.js +4 -6
  207. package/dist/rowCoordinateCalculations.js.map +1 -1
  208. package/dist/scales.d.ts +22 -0
  209. package/dist/scales.js +30 -0
  210. package/dist/scales.js.map +1 -0
  211. package/dist/seqPosToGlobalCol.d.ts +2 -3
  212. package/dist/seqPosToGlobalCol.js +2 -3
  213. package/dist/seqPosToGlobalCol.js.map +1 -1
  214. package/dist/sequenceLogo.d.ts +6 -11
  215. package/dist/sequenceLogo.js +6 -11
  216. package/dist/sequenceLogo.js.map +1 -1
  217. package/dist/stripDefault.d.ts +7 -14
  218. package/dist/stripDefault.js +7 -14
  219. package/dist/stripDefault.js.map +1 -1
  220. package/dist/svgTestUtil.d.ts +186 -70
  221. package/dist/types.d.ts +221 -21
  222. package/dist/umd.d.ts +2 -0
  223. package/dist/umd.js +4 -2
  224. package/dist/umd.js.map +1 -1
  225. package/dist/useCanvasAutorun.d.ts +5 -10
  226. package/dist/useCanvasAutorun.js +5 -10
  227. package/dist/useCanvasAutorun.js.map +1 -1
  228. package/dist/useMsaSvgFigure.d.ts +20 -0
  229. package/dist/useMsaSvgFigure.js +46 -0
  230. package/dist/useMsaSvgFigure.js.map +1 -0
  231. package/dist/useWheelScroll.js +0 -4
  232. package/dist/useWheelScroll.js.map +1 -1
  233. package/dist/util.d.ts +5 -6
  234. package/dist/util.js +13 -6
  235. package/dist/util.js.map +1 -1
  236. package/dist/version.d.ts +1 -1
  237. package/dist/version.js +1 -1
  238. package/package.json +19 -12
  239. package/src/calculateBlocks.ts +5 -3
  240. package/src/colorSchemes.ts +1 -2
  241. package/src/columnStats.ts +58 -0
  242. package/src/components/DragHandle.tsx +18 -7
  243. package/src/components/Loading.tsx +4 -36
  244. package/src/components/MSAView.tsx +19 -5
  245. package/src/components/MSAViewer.tsx +240 -28
  246. package/src/components/PortalTooltip.tsx +47 -0
  247. package/src/components/ResizeHandles.tsx +17 -32
  248. package/src/components/SequenceTextArea.tsx +3 -4
  249. package/src/components/Track.tsx +57 -19
  250. package/src/components/dialogs/AboutDialog.tsx +35 -6
  251. package/src/components/dialogs/AnnotationFileDialog.tsx +10 -1
  252. package/src/components/dialogs/ExportSVGDialog.tsx +8 -3
  253. package/src/components/dialogs/FeatureDialog.tsx +11 -3
  254. package/src/components/dialogs/TrackInfoDialog.tsx +1 -1
  255. package/src/components/header/GappynessSlider.tsx +6 -11
  256. package/src/components/header/Header.tsx +7 -1
  257. package/src/components/header/LoadWarnings.tsx +11 -25
  258. package/src/components/header/ScrollZoomIcons.tsx +52 -0
  259. package/src/components/header/TreeSettingsMenu.tsx +1 -3
  260. package/src/components/header/UnshareableDataWarning.tsx +2 -4
  261. package/src/components/header/ZoomControls.tsx +74 -14
  262. package/src/components/header/getAnnotationsMenu.ts +3 -6
  263. package/src/components/header/settingsMenuItems.ts +13 -8
  264. package/src/components/import/ImportForm.tsx +3 -5
  265. package/src/components/import/ImportFormExamples.tsx +2 -2
  266. package/src/components/import/util.ts +1 -2
  267. package/src/components/minimap/Minimap.tsx +1 -2
  268. package/src/components/msa/AnnotationLegend.tsx +48 -38
  269. package/src/components/msa/MSACanvas.tsx +3 -8
  270. package/src/components/msa/MSACanvasBlock.tsx +13 -16
  271. package/src/components/msa/MSAMouseoverCanvas.tsx +2 -1
  272. package/src/components/msa/domainBandCursor.ts +7 -11
  273. package/src/components/msa/drawFeatureSpans.ts +205 -0
  274. package/src/components/msa/legendRows.ts +24 -0
  275. package/src/components/msa/msaRaster.ts +30 -39
  276. package/src/components/msa/packDomainLanes.ts +36 -0
  277. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +67 -123
  278. package/src/components/msa/renderHighlights.ts +53 -20
  279. package/src/components/msa/renderMSABlock.ts +14 -11
  280. package/src/components/msa/tileColor.ts +4 -7
  281. package/src/components/msa/useMsaBlockMouse.ts +6 -6
  282. package/src/components/rowpanels/RowPanelBlock.tsx +139 -0
  283. package/src/components/rowpanels/RowPanelHeaders.tsx +57 -0
  284. package/src/components/rowpanels/RowPanels.tsx +77 -0
  285. package/src/components/rowpanels/headerLayout.ts +5 -0
  286. package/src/components/rowpanels/renderFeaturePanel.ts +66 -0
  287. package/src/components/rowpanels/renderRowPanel.ts +41 -0
  288. package/src/components/rowpanels/renderStrip.ts +46 -0
  289. package/src/components/tracks/TrackBlocks.tsx +3 -5
  290. package/src/components/tracks/TrackTooltipContent.tsx +156 -0
  291. package/src/components/tracks/drawTracks.ts +25 -50
  292. package/src/components/tracks/useTrackHover.ts +42 -0
  293. package/src/components/tree/CladeLabels.tsx +77 -0
  294. package/src/components/tree/TreeBranchMenu.tsx +1 -2
  295. package/src/components/tree/TreeCanvas.tsx +2 -3
  296. package/src/components/tree/TreeCanvasBlock.tsx +8 -32
  297. package/src/components/tree/TreeNodeMenu.tsx +1 -2
  298. package/src/components/tree/TreeOverview.tsx +106 -0
  299. package/src/components/tree/TreeRuler.tsx +11 -22
  300. package/src/components/tree/cladeBrackets.ts +73 -0
  301. package/src/components/tree/dialogs/TreeNodeInfoDialog.tsx +2 -2
  302. package/src/components/tree/renderTreeCanvas.ts +242 -21
  303. package/src/components/tree/renderTreeOverview.ts +212 -0
  304. package/src/components/tree/useTreeHover.ts +2 -4
  305. package/src/constants.ts +61 -22
  306. package/src/createPaletteMap.ts +10 -9
  307. package/src/element.ts +321 -0
  308. package/src/featureFields.ts +19 -0
  309. package/src/flatToTree.ts +1 -2
  310. package/src/ggplotPalettes.ts +60 -0
  311. package/src/hierarchy.ts +77 -9
  312. package/src/index.ts +31 -7
  313. package/src/model/DataModel.ts +2 -5
  314. package/src/model/msaModel.ts +3 -2
  315. package/src/model/treeModel.ts +42 -0
  316. package/src/model.ts +1677 -643
  317. package/src/mount.tsx +32 -0
  318. package/src/neighborJoining.ts +8 -32
  319. package/src/renderToStaticMarkup.ts +13 -24
  320. package/src/renderToSvg.tsx +335 -68
  321. package/src/rowCoordinateCalculations.ts +4 -6
  322. package/src/scales.ts +47 -0
  323. package/src/seqPosToGlobalCol.ts +2 -3
  324. package/src/sequenceLogo.ts +6 -11
  325. package/src/stripDefault.ts +7 -14
  326. package/src/types.ts +260 -45
  327. package/src/umd.ts +4 -2
  328. package/src/useCanvasAutorun.ts +5 -10
  329. package/src/useMsaSvgFigure.ts +72 -0
  330. package/src/useWheelScroll.ts +0 -4
  331. package/src/util.ts +15 -6
  332. package/src/version.ts +1 -1
  333. package/dist/components/msa/ColumnStats.js +0 -42
  334. package/dist/components/msa/ColumnStats.js.map +0 -1
  335. package/src/components/msa/ColumnStats.tsx +0 -54
@@ -1 +1 @@
1
- {"version":3,"file":"AnnotationFileDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/AnnotationFileDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,KAAK,EACL,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,gBAAgB,EAChB,iCAAiC,GAClC,MAAM,aAAa,CAAA;AAKpB,2EAA2E;AAC3E,8EAA8E;AAC9E,uDAAuD;AACvD,SAAS,KAAK,CAAC,IAAY;IACzB,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,EAAE,CAAA;IAChC,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;QAC7B,OAAO,IAAI,CAAA;IACb,CAAC;IACD,MAAM,QAAQ,GAAyB,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;IAC1D,OAAO,gBAAgB,CAAC,iCAAiC,CAAC,QAAQ,CAAC,CAAC,CAAA;AACtE,CAAC;AAED,KAAK,UAAU,SAAS,CAAC,GAAW;IAClC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,CAAC,CAAA;IACjC,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,KAAK,CACb,QAAQ,QAAQ,CAAC,MAAM,aAAa,GAAG,IAAI,MAAM,QAAQ,CAAC,IAAI,EAAE,EAAE,CACnE,CAAA;IACH,CAAC;IACD,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAA;AACxB,CAAC;AAED,MAAM,oBAAoB,GAAG,QAAQ,CAAC,UAAU,EAC9C,WAAW,EACX,KAAK,GAIN;IACC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,EAAQ,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAA;IAC5C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAClC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAE7C,2EAA2E;IAC3E,4EAA4E;IAC5E,yEAAyE;IACzE,oCAAoC;IACpC,OAAO,CACL,oBAAC,MAAM,IACL,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,sBAAsB,EAC5B,OAAO,EAAE,GAAG,EAAE;YACZ,WAAW,EAAE,CAAA;QACf,CAAC,EACD,IAAI;QAEJ,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,yIAGE;YAEb,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE;gBACzC,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;oBAC/B,oBAAC,UAAU,IACT,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;wBAC/B,CAAC;wBAED,oBAAC,gBAAgB,IAAC,KAAK,EAAC,KAAK,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,KAAK,GAAG;wBAChE,oBAAC,gBAAgB,IAAC,KAAK,EAAC,MAAM,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,MAAM,GAAG,CACvD,CACD;gBACb,MAAM,KAAK,KAAK,CAAC,CAAC,CAAC,CAClB;oBACE,oBAAC,UAAU,6CAAgD;oBAC3D,oBAAC,SAAS,IACR,KAAK,EAAC,KAAK,EACX,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;wBAC5B,CAAC,GACD,CACE,CACP,CAAC,CAAC,CAAC,CACF,6BAAK,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE;oBAC5B,oBAAC,UAAU,wDAEE;oBACb,oBAAC,MAAM,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAC,OAAO;;wBAE1C,+BACE,IAAI,EAAC,MAAM,EACX,MAAM,QACN,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;gCACvB,MAAM,MAAM,GAAG,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAA;gCAChC,IAAI,MAAM,EAAE,CAAC;oCACX,OAAO,CAAC,MAAM,CAAC,CAAA;gCACjB,CAAC;4BACH,CAAC,GACD,CACK;oBACR,IAAI,CAAC,CAAC,CAAC,oBAAC,UAAU,QAAE,IAAI,CAAC,IAAI,CAAc,CAAC,CAAC,CAAC,IAAI,CAC/C,CACP,CACG,CACQ;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,OAAO,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,mEAAmE;oBACnE,CAAC;oBAAA,CAAC,KAAK,IAAI,EAAE;wBACX,UAAU,CAAC,IAAI,CAAC,CAAA;wBAChB,QAAQ,CAAC,SAAS,CAAC,CAAA;wBACnB,IAAI,CAAC;4BACH,MAAM,IAAI,GAAG,MAAM,CAAC,MAAM,KAAK,MAAM,IAAI,IAAI;gCAC3C,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE;gCACb,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAA;4BACnB,8DAA8D;4BAC9D,6DAA6D;4BAC7D,4DAA4D;4BAC5D,2BAA2B;4BAC3B,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAA;4BACzB,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;4BAC1B,WAAW,EAAE,CAAA;wBACf,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC;gCAAS,CAAC;4BACT,UAAU,CAAC,KAAK,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,CAAC,EAAE,CAAA;gBACN,CAAC,uBAGM,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,oBAAoB,CAAA"}
1
+ {"version":3,"file":"AnnotationFileDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/AnnotationFileDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,KAAK,EACL,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,gBAAgB,EAChB,iCAAiC,GAClC,MAAM,aAAa,CAAA;AAKpB,2EAA2E;AAC3E,8EAA8E;AAC9E,uDAAuD;AACvD,SAAS,KAAK,CAAC,IAAY;IACzB,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,EAAE,CAAA;IAChC,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;QAC7B,OAAO,IAAI,CAAA;IACb,CAAC;IACD,MAAM,QAAQ,GAAyB,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;IAC1D,OAAO,gBAAgB,CAAC,iCAAiC,CAAC,QAAQ,CAAC,CAAC,CAAA;AACtE,CAAC;AAED,KAAK,UAAU,SAAS,CAAC,GAAW;IAClC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,CAAC,CAAA;IACjC,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,KAAK,CACb,QAAQ,QAAQ,CAAC,MAAM,aAAa,GAAG,IAAI,MAAM,QAAQ,CAAC,IAAI,EAAE,EAAE,CACnE,CAAA;IACH,CAAC;IACD,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAA;AACxB,CAAC;AAED,MAAM,oBAAoB,GAAG,QAAQ,CAAC,UAAU,EAC9C,WAAW,EACX,KAAK,GAIN;IACC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,EAAQ,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAA;IAC5C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAClC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAE7C,2EAA2E;IAC3E,4EAA4E;IAC5E,yEAAyE;IACzE,oCAAoC;IACpC,OAAO,CACL,oBAAC,MAAM,IACL,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,sBAAsB,EAC5B,OAAO,EAAE,GAAG,EAAE;YACZ,WAAW,EAAE,CAAA;QACf,CAAC,EACD,IAAI;QAEJ,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,yIAGE;YAEb,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE;gBACzC,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;oBAC/B,oBAAC,UAAU,IACT,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;wBAC/B,CAAC;wBAED,oBAAC,gBAAgB,IAAC,KAAK,EAAC,KAAK,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,KAAK,GAAG;wBAChE,oBAAC,gBAAgB,IAAC,KAAK,EAAC,MAAM,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,MAAM,GAAG,CACvD,CACD;gBACb,MAAM,KAAK,KAAK,CAAC,CAAC,CAAC,CAClB;oBACE,oBAAC,UAAU,6CAAgD;oBAC3D,oBAAC,SAAS,IACR,KAAK,EAAC,KAAK,EACX,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;wBAC5B,CAAC,GACD,CACE,CACP,CAAC,CAAC,CAAC,CACF,6BAAK,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE;oBAC5B,oBAAC,UAAU,wDAEE;oBACb,oBAAC,MAAM,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAC,OAAO;;wBAE1C,+BACE,IAAI,EAAC,MAAM,EACX,MAAM,QACN,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;gCACvB,MAAM,MAAM,GAAG,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAA;gCAChC,IAAI,MAAM,EAAE,CAAC;oCACX,OAAO,CAAC,MAAM,CAAC,CAAA;gCACjB,CAAC;4BACH,CAAC,GACD,CACK;oBACR,IAAI,CAAC,CAAC,CAAC,oBAAC,UAAU,QAAE,IAAI,CAAC,IAAI,CAAc,CAAC,CAAC,CAAC,IAAI,CAC/C,CACP,CACG,CACQ;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,OAAO,IAAI,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,EAC9D,OAAO,EAAE,GAAG,EAAE;oBACZ,mEAAmE;oBACnE,CAAC;oBAAA,CAAC,KAAK,IAAI,EAAE;wBACX,UAAU,CAAC,IAAI,CAAC,CAAA;wBAChB,QAAQ,CAAC,SAAS,CAAC,CAAA;wBACnB,IAAI,CAAC;4BACH,MAAM,IAAI,GAAG,MAAM,CAAC,MAAM,KAAK,MAAM,IAAI,IAAI;gCAC3C,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE;gCACb,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAA;4BACnB,8DAA8D;4BAC9D,6DAA6D;4BAC7D,4DAA4D;4BAC5D,2BAA2B;4BAC3B,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAA;4BACzB,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;4BAC1B,WAAW,EAAE,CAAA;wBACf,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC;gCAAS,CAAC;4BACT,UAAU,CAAC,KAAK,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,CAAC,EAAE,CAAA;gBACN,CAAC,uBAGM;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,oBAAoB,CAAA"}
@@ -18,10 +18,12 @@ export default function ExportSVGDialog({ model, onClose, }) {
18
18
  const [error, setError] = useState();
19
19
  const [exporting, setExporting] = useState(false);
20
20
  const theme = useTheme();
21
- const { totalWidth, totalHeight, treeAreaWidth, turnedOnTracks, totalTrackAreaHeight, numColumns, leaves, showMsaLetters, } = model;
21
+ const { totalWidth, totalHeight, treeAreaWidth, rowPanelsWidth, turnedOnTracks, totalTrackAreaHeight, numColumns, leaves, showMsaLetters, treeOverviewHeight, } = model;
22
22
  const hasTracks = turnedOnTracks.length > 0;
23
- const entireWidth = totalWidth + treeAreaWidth;
24
- const entireHeight = totalHeight + (includeTracks ? totalTrackAreaHeight : 0);
23
+ const entireWidth = totalWidth + treeAreaWidth + rowPanelsWidth;
24
+ const entireHeight = totalHeight +
25
+ (includeTracks ? totalTrackAreaHeight : 0) +
26
+ treeOverviewHeight;
25
27
  // the background is one raster image whatever its size, so what the figure
26
28
  // actually costs is its residue letters: each is an svg element of its own.
27
29
  // Past roughly this many the export runs to tens of seconds and can exhaust
@@ -86,7 +88,7 @@ export default function ExportSVGDialog({ model, onClose, }) {
86
88
  setExporting(false);
87
89
  });
88
90
  });
89
- } }, exporting ? 'Exporting…' : 'Submit'),
91
+ } }, exporting ? 'Exporting…' : 'Export'),
90
92
  React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => {
91
93
  onClose();
92
94
  } }, "Cancel"))));
@@ -1 +1 @@
1
- {"version":3,"file":"ExportSVGDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/ExportSVGDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,KAAK,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,KAAK,EACL,UAAU,EACV,UAAU,EACV,QAAQ,GACT,MAAM,eAAe,CAAA;AAEtB,OAAO,SAAS,MAAM,iBAAkB,CAAA;AAIxC,4EAA4E;AAC5E,gFAAgF;AAChF,+EAA+E;AAC/E,gBAAgB;AAChB,SAAS,UAAU,CAAC,EAAc;IAChC,qBAAqB,CAAC,GAAG,EAAE;QACzB,qBAAqB,CAAC,EAAE,CAAC,CAAA;IAC3B,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,eAAe,CAAC,EACtC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC1D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAC1C,UAAU,CACX,CAAA;IACD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACjD,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EACJ,UAAU,EACV,WAAW,EACX,aAAa,EACb,cAAc,EACd,oBAAoB,EACpB,UAAU,EACV,MAAM,EACN,cAAc,GACf,GAAG,KAAK,CAAA;IACT,MAAM,SAAS,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAA;IAC3C,MAAM,WAAW,GAAG,UAAU,GAAG,aAAa,CAAA;IAC9C,MAAM,YAAY,GAAG,WAAW,GAAG,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAC7E,2EAA2E;IAC3E,4EAA4E;IAC5E,4EAA4E;IAC5E,4BAA4B;IAC5B,MAAM,MAAM,GACV,cAAc,IAAI,UAAU,KAAK,QAAQ,CAAC,CAAC,CAAC,UAAU,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAA;IAC5E,MAAM,aAAa,GAAG,MAAM,GAAG,OAAO,CAAA;IACtC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,YAAY;QAElB,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,oBAAuB;YAClC,oBAAC,SAAS,IACR,KAAK,EAAC,kBAAkB,EACxB,QAAQ,EAAE,UAAU,KAAK,QAAQ,EACjC,OAAO,EAAE,cAAc,EACvB,QAAQ,EAAE,GAAG,EAAE;oBACb,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;gBACpC,CAAC,GACD;YACD,SAAS,CAAC,CAAC,CAAC,CACX,oBAAC,SAAS,IACR,KAAK,EAAC,iBAAiB,EACvB,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,GAAG,EAAE;oBACb,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;gBAClC,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;YACR;gBACE,oBAAC,WAAW;oBACV,oBAAC,SAAS,sBAAwB;oBAClC,oBAAC,UAAU,IACT,KAAK,EAAE,UAAU,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,MAAM,CAAA;4BAC9B,IAAI,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,UAAU,EAAE,CAAC;gCAC/C,aAAa,CAAC,KAAK,CAAC,CAAA;4BACtB,CAAC;wBACH,CAAC;wBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,QAAQ,EACd,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;wBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,UAAU,EAChB,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,uBAAuB,GAC7B,CACS,CACD,CACV;YACL,aAAa,CAAC,CAAC,CAAC,CACf,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,KAAK,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE;;gBAC5B,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC;;gBACzC,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC;;gBAAmB,GAAG;gBAC9C,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC;4LAGpB,CACT,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS;gBACf,oEAAoE;gBACpE,qEAAqE;gBACrE,wCAAwC;gBACxC,QAAQ,EAAE,SAAS,EACnB,SAAS,EACP,SAAS,CAAC,CAAC,CAAC,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAC,SAAS,GAAG,CAAC,CAAC,CAAC,IAAI,EAEnE,OAAO,EAAE,GAAG,EAAE;oBACZ,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClB,UAAU,CAAC,GAAG,EAAE;wBACd,KAAK,KAAK;6BACP,SAAS,CAAC;4BACT,KAAK;4BACL,cAAc;4BACd,aAAa,EAAE,SAAS,IAAI,aAAa;4BACzC,UAAU;yBACX,CAAC;6BACD,IAAI,CAAC,GAAG,EAAE;4BACT,OAAO,EAAE,CAAA;wBACX,CAAC,CAAC;6BACD,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;4BACpB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC,CAAC;6BACD,OAAO,CAAC,GAAG,EAAE;4BACZ,YAAY,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC,CAAC,CAAA;oBACN,CAAC,CAAC,CAAA;gBACJ,CAAC,IAEA,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,QAAQ,CAC7B;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,OAAO,EAAE,CAAA;gBACX,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}
1
+ {"version":3,"file":"ExportSVGDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/ExportSVGDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,KAAK,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,KAAK,EACL,UAAU,EACV,UAAU,EACV,QAAQ,GACT,MAAM,eAAe,CAAA;AAEtB,OAAO,SAAS,MAAM,iBAAkB,CAAA;AAIxC,4EAA4E;AAC5E,gFAAgF;AAChF,+EAA+E;AAC/E,gBAAgB;AAChB,SAAS,UAAU,CAAC,EAAc;IAChC,qBAAqB,CAAC,GAAG,EAAE;QACzB,qBAAqB,CAAC,EAAE,CAAC,CAAA;IAC3B,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,eAAe,CAAC,EACtC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC1D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAC1C,UAAU,CACX,CAAA;IACD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACjD,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EACJ,UAAU,EACV,WAAW,EACX,aAAa,EACb,cAAc,EACd,cAAc,EACd,oBAAoB,EACpB,UAAU,EACV,MAAM,EACN,cAAc,EACd,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,SAAS,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAA;IAC3C,MAAM,WAAW,GAAG,UAAU,GAAG,aAAa,GAAG,cAAc,CAAA;IAC/D,MAAM,YAAY,GAChB,WAAW;QACX,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1C,kBAAkB,CAAA;IACpB,2EAA2E;IAC3E,4EAA4E;IAC5E,4EAA4E;IAC5E,4BAA4B;IAC5B,MAAM,MAAM,GACV,cAAc,IAAI,UAAU,KAAK,QAAQ,CAAC,CAAC,CAAC,UAAU,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAA;IAC5E,MAAM,aAAa,GAAG,MAAM,GAAG,OAAO,CAAA;IACtC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,YAAY;QAElB,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,oBAAuB;YAClC,oBAAC,SAAS,IACR,KAAK,EAAC,kBAAkB,EACxB,QAAQ,EAAE,UAAU,KAAK,QAAQ,EACjC,OAAO,EAAE,cAAc,EACvB,QAAQ,EAAE,GAAG,EAAE;oBACb,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;gBACpC,CAAC,GACD;YACD,SAAS,CAAC,CAAC,CAAC,CACX,oBAAC,SAAS,IACR,KAAK,EAAC,iBAAiB,EACvB,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,GAAG,EAAE;oBACb,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;gBAClC,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;YACR;gBACE,oBAAC,WAAW;oBACV,oBAAC,SAAS,sBAAwB;oBAClC,oBAAC,UAAU,IACT,KAAK,EAAE,UAAU,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,MAAM,CAAA;4BAC9B,IAAI,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,UAAU,EAAE,CAAC;gCAC/C,aAAa,CAAC,KAAK,CAAC,CAAA;4BACtB,CAAC;wBACH,CAAC;wBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,QAAQ,EACd,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;wBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,UAAU,EAChB,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,uBAAuB,GAC7B,CACS,CACD,CACV;YACL,aAAa,CAAC,CAAC,CAAC,CACf,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,KAAK,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE;;gBAC5B,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC;;gBACzC,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC;;gBAAmB,GAAG;gBAC9C,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC;4LAGpB,CACT,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS;gBACf,oEAAoE;gBACpE,qEAAqE;gBACrE,wCAAwC;gBACxC,QAAQ,EAAE,SAAS,EACnB,SAAS,EACP,SAAS,CAAC,CAAC,CAAC,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAC,SAAS,GAAG,CAAC,CAAC,CAAC,IAAI,EAEnE,OAAO,EAAE,GAAG,EAAE;oBACZ,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClB,UAAU,CAAC,GAAG,EAAE;wBACd,KAAK,KAAK;6BACP,SAAS,CAAC;4BACT,KAAK;4BACL,cAAc;4BACd,aAAa,EAAE,SAAS,IAAI,aAAa;4BACzC,UAAU;yBACX,CAAC;6BACD,IAAI,CAAC,GAAG,EAAE;4BACT,OAAO,EAAE,CAAA;wBACX,CAAC,CAAC;6BACD,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;4BACpB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC,CAAC;6BACD,OAAO,CAAC,GAAG,EAAE;4BACZ,YAAY,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC,CAAC,CAAA;oBACN,CAAC,CAAC,CAAA;gBACJ,CAAC,IAEA,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,QAAQ,CAC7B;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,OAAO,EAAE,CAAA;gBACX,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}
@@ -21,10 +21,15 @@ const Toggles = observer(function ({ model }) {
21
21
  } }, "Toggle all off")));
22
22
  });
23
23
  const FeatureTable = observer(function ({ model }) {
24
- const { annotationTypes, annotations, fillPalette } = model;
24
+ const { annotationTypes, annotations, featureColors, fillPalette } = model;
25
25
  const counts = new Map();
26
+ const swatches = new Map();
26
27
  for (const annot of annotations) {
27
- counts.set(annot.accession, (counts.get(annot.accession) ?? 0) + 1);
28
+ const { accession } = annot;
29
+ counts.set(accession, (counts.get(accession) ?? 0) + 1);
30
+ if (!swatches.has(accession)) {
31
+ swatches.set(accession, featureColors.get(annot)?.fill ?? fillPalette[accession]);
32
+ }
28
33
  }
29
34
  return (React.createElement(React.Fragment, null,
30
35
  React.createElement(Toggles, { model: model }),
@@ -46,7 +51,7 @@ const FeatureTable = observer(function ({ model }) {
46
51
  React.createElement("div", { style: {
47
52
  width: 20,
48
53
  height: 20,
49
- background: fillPalette[accession],
54
+ background: swatches.get(accession),
50
55
  } })),
51
56
  React.createElement(TableCell, null, accession),
52
57
  React.createElement(TableCell, null, name),
@@ -1 +1 @@
1
- {"version":3,"file":"FeatureDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/FeatureDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,aAAa,EACb,KAAK,EACL,SAAS,EACT,SAAS,EACT,SAAS,EACT,QAAQ,GACT,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACnE,4EAA4E;IAC5E,2EAA2E;IAC3E,gEAAgE;IAChE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,MAAM,MAAM,GAAG,CAAC,KAAc,EAAE,EAAE;QAChC,KAAK,MAAM,SAAS,IAAI,eAAe,CAAC,IAAI,EAAE,EAAE,CAAC;YAC/C,KAAK,CAAC,SAAS,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;QACnC,CAAC;IACH,CAAC,CAAA;IACD,OAAO,CACL;QACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,IAAI,CAAC,CAAA;YACd,CAAC,oBAGM;QAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,KAAK,CAAC,CAAA;YACf,CAAC,qBAGM,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACxE,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC3D,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAA;IACxC,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;QAChC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IACrE,CAAC;IACD,OAAO,CACL;QACE,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI;QACzB,oBAAC,KAAK,IAAC,IAAI,EAAC,OAAO;YACjB,oBAAC,SAAS;gBACR,oBAAC,QAAQ;oBACP,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU,GAAG;oBAChC,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,oBAAsB;oBAChC,oBAAC,SAAS,eAAiB;oBAC3B,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,sBAAwB,CACzB,CACD;YACZ,oBAAC,SAAS,QACP,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAChC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC,CACpC,oBAAC,QAAQ,IAAC,GAAG,EAAE,SAAS;gBACtB,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU;oBAC3B,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,EAChD,QAAQ,EAAE,GAAG,EAAE;4BACb,KAAK,CAAC,SAAS,CACb,SAAS,EACT,CAAC,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,CACzC,CAAA;wBACH,CAAC,GACD,CACQ;gBACZ,oBAAC,SAAS;oBACR,6BACE,KAAK,EAAE;4BACL,KAAK,EAAE,EAAE;4BACT,MAAM,EAAE,EAAE;4BACV,UAAU,EAAE,WAAW,CAAC,SAAS,CAAC;yBACnC,GACD,CACQ;gBACZ,oBAAC,SAAS,QAAE,SAAS,CAAa;gBAClC,oBAAC,SAAS,QAAE,IAAI,CAAa;gBAC7B,oBAAC,SAAS,QAAE,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAa;gBAC9C,oBAAC,SAAS,QAAE,WAAW,CAAa,CAC3B,CACZ,CACF,CACS,CACN,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,OAAO,EACP,KAAK,GAIN;IACC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,iBAAiB,EACvB,QAAQ,EAAC,IAAI;QAEb,oBAAC,aAAa;YACZ,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAChB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}
1
+ {"version":3,"file":"FeatureDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/FeatureDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,aAAa,EACb,KAAK,EACL,SAAS,EACT,SAAS,EACT,SAAS,EACT,QAAQ,GACT,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACnE,4EAA4E;IAC5E,2EAA2E;IAC3E,gEAAgE;IAChE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,MAAM,MAAM,GAAG,CAAC,KAAc,EAAE,EAAE;QAChC,KAAK,MAAM,SAAS,IAAI,eAAe,CAAC,IAAI,EAAE,EAAE,CAAC;YAC/C,KAAK,CAAC,SAAS,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;QACnC,CAAC;IACH,CAAC,CAAA;IACD,OAAO,CACL;QACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,IAAI,CAAC,CAAA;YACd,CAAC,oBAGM;QAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,KAAK,CAAC,CAAA;YACf,CAAC,qBAGM,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACxE,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,aAAa,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC1E,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAA;IACxC,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAkB,CAAA;IAC1C,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;QAChC,MAAM,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;QAC3B,MAAM,CAAC,GAAG,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;QACvD,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC;YAC7B,QAAQ,CAAC,GAAG,CACV,SAAS,EACT,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,IAAI,IAAI,WAAW,CAAC,SAAS,CAAE,CAC1D,CAAA;QACH,CAAC;IACH,CAAC;IACD,OAAO,CACL;QACE,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI;QACzB,oBAAC,KAAK,IAAC,IAAI,EAAC,OAAO;YACjB,oBAAC,SAAS;gBACR,oBAAC,QAAQ;oBACP,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU,GAAG;oBAChC,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,oBAAsB;oBAChC,oBAAC,SAAS,eAAiB;oBAC3B,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,sBAAwB,CACzB,CACD;YACZ,oBAAC,SAAS,QACP,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAChC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC,CACpC,oBAAC,QAAQ,IAAC,GAAG,EAAE,SAAS;gBACtB,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU;oBAC3B,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,EAChD,QAAQ,EAAE,GAAG,EAAE;4BACb,KAAK,CAAC,SAAS,CACb,SAAS,EACT,CAAC,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,CACzC,CAAA;wBACH,CAAC,GACD,CACQ;gBACZ,oBAAC,SAAS;oBACR,6BACE,KAAK,EAAE;4BACL,KAAK,EAAE,EAAE;4BACT,MAAM,EAAE,EAAE;4BACV,UAAU,EAAE,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC;yBACpC,GACD,CACQ;gBACZ,oBAAC,SAAS,QAAE,SAAS,CAAa;gBAClC,oBAAC,SAAS,QAAE,IAAI,CAAa;gBAC7B,oBAAC,SAAS,QAAE,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAa;gBAC9C,oBAAC,SAAS,QAAE,WAAW,CAAa,CAC3B,CACZ,CACF,CACS,CACN,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,OAAO,EACP,KAAK,GAIN;IACC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,iBAAiB,EACvB,QAAQ,EAAC,IAAI;QAEb,oBAAC,aAAa;YACZ,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAChB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}
@@ -8,7 +8,7 @@ const useStyles = makeStyles()(theme => ({
8
8
  textArea: {
9
9
  padding: theme.spacing(2),
10
10
  overflow: 'auto',
11
- background: '#ddd',
11
+ background: theme.palette.action.selected,
12
12
  wordBreak: 'break-word',
13
13
  },
14
14
  }));
@@ -1 +1 @@
1
- {"version":3,"file":"TrackInfoDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/TrackInfoDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,UAAU,MAAM,kBAAmB,CAAA;AAI1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,QAAQ,EAAE,MAAM;QAChB,UAAU,EAAE,MAAM;QAClB,SAAS,EAAE,YAAY;KACxB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,OAAO,EAAE,OAAO,EAChB,SAAS,QACT,QAAQ,EAAC,IAAI,EACb,KAAK,EAAE,gBAAgB,IAAI,EAAE;QAE7B,oBAAC,aAAa,QAGX,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,CACpB,oBAAC,UAAU,uCAA0C,CACtD,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU,IAAC,IAAI,EAAE,IAAI,GAAI;YAC1B,6BAAK,SAAS,EAAE,OAAO,CAAC,QAAQ,IAAG,IAAI,CAAO,CAC7C,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAC,WAAW,YAEtD,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
1
+ {"version":3,"file":"TrackInfoDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/TrackInfoDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,UAAU,MAAM,kBAAmB,CAAA;AAI1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,QAAQ,EAAE,MAAM;QAChB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ;QACzC,SAAS,EAAE,YAAY;KACxB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,OAAO,EAAE,OAAO,EAChB,SAAS,QACT,QAAQ,EAAC,IAAI,EACb,KAAK,EAAE,gBAAgB,IAAI,EAAE;QAE7B,oBAAC,aAAa,QAGX,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,CACpB,oBAAC,UAAU,uCAA0C,CACtD,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU,IAAC,IAAI,EAAE,IAAI,GAAI;YAC1B,6BAAK,SAAS,EAAE,OAAO,CAAC,QAAQ,IAAG,IAAI,CAAO,CAC7C,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAC,WAAW,YAEtD,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
@@ -12,18 +12,13 @@ const GappynessSlider = observer(function GappynessSlider({ model, }) {
12
12
  allowedGappyness,
13
13
  "% gaps"),
14
14
  React.createElement(Slider
15
- // Named, because the class alone is not enough to find it from outside.
16
- // An MSA is normally embedded beside other MUI Sliders (in JBrowse, the
17
- // linear view's own zoom control), so a `.MuiSlider-thumb` selector in a
18
- // test or a screenshot spec picks whichever comes first in the document
19
- // and drives that instead — which reads as this slider ignoring its
20
- // keyboard. Target `[data-testid="gappyness_slider"] input` to reach the
21
- // hidden range input MUI renders in the thumb, which is the node that
22
- // takes focus and receives arrow/PageUp/PageDown.
15
+ // In JBrowse other MUI Sliders share the page, so `.MuiSlider-thumb`
16
+ // can match the wrong one. Tests and screenshot specs target
17
+ // `[data-testid="gappyness_slider"] input`, the hidden range input that
18
+ // takes focus and arrow/PageUp/PageDown.
23
19
  //
24
- // Deliberately NOT `slotProps={{ input: ... }}`: passing slotProps here
25
- // widens the Slider's generic so `onChange`'s `val` infers as
26
- // `number | number[]` and no longer assigns to setAllowedGappyness.
20
+ // Not `slotProps={{ input: ... }}`: that widens `onChange`'s `val` to
21
+ // `number | number[]`, which setAllowedGappyness rejects.
27
22
  , { "data-testid": "gappyness_slider", style: { width: 100 }, min: 1, max: 100, value: allowedGappyness, onChange: (_, val) => {
28
23
  model.setAllowedGappyness(val);
29
24
  } })));
@@ -1 +1 @@
1
- {"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/header/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAI3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpB,gBAAgB;qBAC1B;QACb,oBAAC,MAAM;QACL,wEAAwE;QACxE,wEAAwE;QACxE,yEAAyE;QACzE,wEAAwE;QACxE,oEAAoE;QACpE,yEAAyE;QACzE,sEAAsE;QACtE,kDAAkD;QAClD,EAAE;QACF,wEAAwE;QACxE,8DAA8D;QAC9D,oEAAoE;2BACxD,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EACrB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,gBAAgB,EACvB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;YAChC,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
1
+ {"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/header/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAI3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpB,gBAAgB;qBAC1B;QACb,oBAAC,MAAM;QACL,qEAAqE;QACrE,6DAA6D;QAC7D,wEAAwE;QACxE,yCAAyC;QACzC,EAAE;QACF,sEAAsE;QACtE,0DAA0D;2BAC9C,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EACrB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,gBAAgB,EACvB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;YAChC,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
@@ -21,7 +21,10 @@ const Header = observer(function ({ model }) {
21
21
  useEffect(() => {
22
22
  model.setHeaderHeight(height ?? 0);
23
23
  }, [model, height]);
24
- return (React.createElement("div", { ref: ref, style: { display: 'flex' } },
24
+ useEffect(() => () => {
25
+ model.setHeaderHeight(0);
26
+ }, [model]);
27
+ return (React.createElement("div", { ref: ref, style: { display: 'flex', flexWrap: 'wrap' } },
25
28
  React.createElement(FileMenu, { model: model }),
26
29
  React.createElement(ColorSchemeMenu, { model: model }),
27
30
  React.createElement(TreeSettingsMenu, { model: model }),
@@ -1 +1 @@
1
- {"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,QAAQ,MAAM,eAAgB,CAAA;AACrC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,gBAAgB,MAAM,uBAAwB,CAAA;AACrD,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,gBAAgB,MAAM,uBAAwB,CAAA;AACrD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,QAAQ,MAAM,eAAgB,CAAA;AAIrC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA4B,CAAC,CAAC,CAAA;AAEpE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;QACvC,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,6BAAK,KAAK,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;YAC7C,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC;QACN,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI;QACxC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,OAAO,IAAC,KAAK,EAAC,OAAO;YACpB,oBAAC,UAAU,kBACE,OAAO,EAClB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBAC1D,CAAC;gBAED,oBAAC,IAAI,OAAG,CACG,CACL,CACN,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}
1
+ {"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,QAAQ,MAAM,eAAgB,CAAA;AACrC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,gBAAgB,MAAM,uBAAwB,CAAA;AACrD,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,gBAAgB,MAAM,uBAAwB,CAAA;AACrD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,QAAQ,MAAM,eAAgB,CAAA;AAIrC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA4B,CAAC,CAAC,CAAA;AAEpE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,SAAS,CACP,GAAG,EAAE,CAAC,GAAG,EAAE;QACT,KAAK,CAAC,eAAe,CAAC,CAAC,CAAC,CAAA;IAC1B,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE;QACzD,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,6BAAK,KAAK,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;YAC7C,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC;QACN,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI;QACxC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,OAAO,IAAC,KAAK,EAAC,OAAO;YACpB,oBAAC,UAAU,kBACE,OAAO,EAClB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBAC1D,CAAC;gBAED,oBAAC,IAAI,OAAG,CACG,CACL,CACN,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}
@@ -1,36 +1,19 @@
1
1
  import React from 'react';
2
- import { makeStyles } from '@jbrowse/core/util/tss-react';
3
2
  import Warning from '@mui/icons-material/Warning';
4
- import { Tooltip, Typography } from '@mui/material';
3
+ import { Button, Tooltip } from '@mui/material';
5
4
  import { observer } from 'mobx-react';
6
- const useStyles = makeStyles()(theme => ({
7
- warning: {
8
- display: 'flex',
9
- alignItems: 'center',
10
- gap: 4,
11
- margin: 'auto',
12
- marginLeft: 10,
13
- whiteSpace: 'nowrap',
14
- color: theme.palette.warning.main,
15
- cursor: 'pointer',
16
- },
17
- }));
18
- // An optional layer that failed -- a 404 on the annotations, a row-metadata
19
- // file that is not JSON -- used to go to `error`, which takes dataInitialized
20
- // down with it and replaces a perfectly good alignment with an error screen.
21
- // It says so here instead, and the reader dismisses it.
5
+ // A failed optional layer, such as a 404 on the annotations or row metadata
6
+ // that is not JSON, shows here as a dismissible warning. Setting `error` would
7
+ // clear dataInitialized and hide the loaded alignment.
22
8
  const LoadWarnings = observer(function ({ model }) {
23
9
  const { warnings } = model;
24
- const { classes } = useStyles();
25
10
  if (warnings.length === 0) {
26
11
  return null;
27
12
  }
28
13
  return (React.createElement(Tooltip, { title: `${warnings.join(' ')} (click to dismiss)` },
29
- React.createElement(Typography, { component: "div", className: classes.warning, onClick: () => {
14
+ React.createElement(Button, { "aria-label": "Dismiss warnings", color: "warning", size: "small", startIcon: React.createElement(Warning, { fontSize: "small" }), style: { margin: 'auto', marginLeft: 10, whiteSpace: 'nowrap' }, onClick: () => {
30
15
  model.clearWarnings();
31
- } },
32
- React.createElement(Warning, { fontSize: "small" }),
33
- warnings.length > 1 ? `${warnings.length} warnings` : 'Warning')));
16
+ } }, warnings.length > 1 ? `${warnings.length} warnings` : 'Warning')));
34
17
  });
35
18
  export default LoadWarnings;
36
19
  //# sourceMappingURL=LoadWarnings.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"LoadWarnings.js","sourceRoot":"","sources":["../../../src/components/header/LoadWarnings.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,GAAG,EAAE,CAAC;QACN,MAAM,EAAE,MAAM;QACd,UAAU,EAAE,EAAE;QACd,UAAU,EAAE,QAAQ;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI;QACjC,MAAM,EAAE,SAAS;KAClB;CACF,CAAC,CAAC,CAAA;AAEH,4EAA4E;AAC5E,8EAA8E;AAC9E,6EAA6E;AAC7E,wDAAwD;AACxD,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACxE,MAAM,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IAC1B,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC1B,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,oBAAC,OAAO,IAAC,KAAK,EAAE,GAAG,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,qBAAqB;QACxD,oBAAC,UAAU,IACT,SAAS,EAAC,KAAK,EACf,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,aAAa,EAAE,CAAA;YACvB,CAAC;YAED,oBAAC,OAAO,IAAC,QAAQ,EAAC,OAAO,GAAG;YAC3B,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,WAAW,CAAC,CAAC,CAAC,SAAS,CACrD,CACL,CACX,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}
1
+ {"version":3,"file":"LoadWarnings.js","sourceRoot":"","sources":["../../../src/components/header/LoadWarnings.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AAC/C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,4EAA4E;AAC5E,+EAA+E;AAC/E,uDAAuD;AACvD,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACxE,MAAM,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IAC1B,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC1B,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,oBAAC,OAAO,IAAC,KAAK,EAAE,GAAG,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,qBAAqB;QACxD,oBAAC,MAAM,kBACM,kBAAkB,EAC7B,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,OAAO,EACZ,SAAS,EAAE,oBAAC,OAAO,IAAC,QAAQ,EAAC,OAAO,GAAG,EACvC,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE,EAC/D,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,aAAa,EAAE,CAAA;YACvB,CAAC,IAEA,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,WAAW,CAAC,CAAC,CAAC,SAAS,CACzD,CACD,CACX,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}
@@ -0,0 +1,6 @@
1
+ import React from 'react';
2
+ import type { SvgIconProps } from '@mui/material/SvgIcon';
3
+ export declare function MouseScroll(props: SvgIconProps): React.JSX.Element;
4
+ export declare function MouseZoomBoth(props: SvgIconProps): React.JSX.Element;
5
+ export declare function MouseZoomHorizontal(props: SvgIconProps): React.JSX.Element;
6
+ export declare function MouseZoomVertical(props: SvgIconProps): React.JSX.Element;
@@ -0,0 +1,35 @@
1
+ import React from 'react';
2
+ import SvgIcon from '@mui/material/SvgIcon';
3
+ // Mouse glyphs with outward arrows on the axes a wheel zoom scales.
4
+ // @mui/icons-material ships only the plain `Mouse`, and three variants that
5
+ // differ only in their arrows have to share one body to stay apart at 24px.
6
+ // The body's inner subpath runs the opposite sweep, which punches the hole the
7
+ // wheel bar sits in.
8
+ const BODY = 'M12 5a4 4 0 0 0-4 4v6a4 4 0 0 0 8 0V9a4 4 0 0 0-4-4zm0 2a2 2 0 0 1 2 2v6a2 2 0 0 1-4 0V9a2 2 0 0 1 2-2z';
9
+ const WHEEL = 'M11.2 8.6h1.6v3.2h-1.6z';
10
+ const LEFT = 'M.4 12 5 15V9z';
11
+ const RIGHT = 'M23.6 12 19 9v6z';
12
+ const UP = 'M12 .4 15 4H9z';
13
+ const DOWN = 'M12 23.6 9 20h6z';
14
+ function MouseZoom({ arrows, ...rest }) {
15
+ return (React.createElement(SvgIcon, { ...rest },
16
+ React.createElement("path", { d: BODY }),
17
+ React.createElement("path", { d: WHEEL }),
18
+ arrows.map(d => (React.createElement("path", { key: d, d: d })))));
19
+ }
20
+ // the bare body, for a wheel that scrolls. @mui/icons-material's own `Mouse` is
21
+ // a solid silhouette, which would jump to a different drawing when the menu
22
+ // changes the mode.
23
+ export function MouseScroll(props) {
24
+ return React.createElement(MouseZoom, { ...props, arrows: [] });
25
+ }
26
+ export function MouseZoomBoth(props) {
27
+ return React.createElement(MouseZoom, { ...props, arrows: [LEFT, RIGHT, UP, DOWN] });
28
+ }
29
+ export function MouseZoomHorizontal(props) {
30
+ return React.createElement(MouseZoom, { ...props, arrows: [LEFT, RIGHT] });
31
+ }
32
+ export function MouseZoomVertical(props) {
33
+ return React.createElement(MouseZoom, { ...props, arrows: [UP, DOWN] });
34
+ }
35
+ //# sourceMappingURL=ScrollZoomIcons.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ScrollZoomIcons.js","sourceRoot":"","sources":["../../../src/components/header/ScrollZoomIcons.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,OAAO,MAAM,uBAAuB,CAAA;AAI3C,oEAAoE;AACpE,4EAA4E;AAC5E,4EAA4E;AAC5E,+EAA+E;AAC/E,qBAAqB;AACrB,MAAM,IAAI,GACR,yGAAyG,CAAA;AAC3G,MAAM,KAAK,GAAG,yBAAyB,CAAA;AACvC,MAAM,IAAI,GAAG,gBAAgB,CAAA;AAC7B,MAAM,KAAK,GAAG,kBAAkB,CAAA;AAChC,MAAM,EAAE,GAAG,gBAAgB,CAAA;AAC3B,MAAM,IAAI,GAAG,kBAAkB,CAAA;AAE/B,SAAS,SAAS,CAAC,EACjB,MAAM,EACN,GAAG,IAAI,EACsC;IAC7C,OAAO,CACL,oBAAC,OAAO,OAAK,IAAI;QACf,8BAAM,CAAC,EAAE,IAAI,GAAI;QACjB,8BAAM,CAAC,EAAE,KAAK,GAAI;QACjB,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CACf,8BAAM,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,GAAI,CACvB,CAAC,CACM,CACX,CAAA;AACH,CAAC;AAED,gFAAgF;AAChF,4EAA4E;AAC5E,oBAAoB;AACpB,MAAM,UAAU,WAAW,CAAC,KAAmB;IAC7C,OAAO,oBAAC,SAAS,OAAK,KAAK,EAAE,MAAM,EAAE,EAAE,GAAI,CAAA;AAC7C,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,KAAmB;IAC/C,OAAO,oBAAC,SAAS,OAAK,KAAK,EAAE,MAAM,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,EAAE,IAAI,CAAC,GAAI,CAAA;AAClE,CAAC;AAED,MAAM,UAAU,mBAAmB,CAAC,KAAmB;IACrD,OAAO,oBAAC,SAAS,OAAK,KAAK,EAAE,MAAM,EAAE,CAAC,IAAI,EAAE,KAAK,CAAC,GAAI,CAAA;AACxD,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,KAAmB;IACnD,OAAO,oBAAC,SAAS,OAAK,KAAK,EAAE,MAAM,EAAE,CAAC,EAAE,EAAE,IAAI,CAAC,GAAI,CAAA;AACrD,CAAC"}
@@ -16,9 +16,7 @@ const TreeSettingsMenu = observer(function ({ model, }) {
16
16
  type: 'subMenu',
17
17
  subMenu: [
18
18
  {
19
- // the cap shows in the label rather than arriving as an
20
- // error after the click, since the click is what would
21
- // freeze the tab
19
+ // the label shows the cap before a click would freeze the tab
22
20
  label: tooManyRows
23
21
  ? `Calculate neighbor joining tree (over ${maxNeighborJoiningRows} rows, use FastTree)`
24
22
  : 'Calculate neighbor joining tree (BLOSUM62)',
@@ -1 +1 @@
1
- {"version":3,"file":"TreeSettingsMenu.js","sourceRoot":"","sources":["../../../src/components/header/TreeSettingsMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAA;AAC3D,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAA;AAI9D,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,EAC1C,KAAK,GAGN;IACC,MAAM,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IACtB,MAAM,WAAW,GAAG,IAAI,CAAC,MAAM,GAAG,sBAAsB,CAAA;IACxD,OAAO,CACL,oBAAC,mBAAmB,mBACN,oBAAoB,EAChC,OAAO,EAAC,eAAe,EACvB,mBAAmB,EAAE,KAAK,EAC1B,YAAY,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,eAAe,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,SAAS,EAAE;YACT,GAAG,qBAAqB,CAAC,KAAK,CAAC;YAC/B,GAAG,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC;gBAClB,CAAC,CAAC;oBACE;wBACE,KAAK,EAAE,UAAU;wBACjB,IAAI,EAAE,SAAkB;wBACxB,OAAO,EAAE;4BACP;gCACE,wDAAwD;gCACxD,uDAAuD;gCACvD,iBAAiB;gCACjB,KAAK,EAAE,WAAW;oCAChB,CAAC,CAAC,yCAAyC,sBAAsB,sBAAsB;oCACvF,CAAC,CAAC,4CAA4C;gCAChD,QAAQ,EAAE,WAAW;gCACrB,OAAO,EAAE,GAAG,EAAE;oCACZ,IAAI,CAAC;wCACH,KAAK,CAAC,mCAAmC,EAAE,CAAA;oCAC7C,CAAC;oCAAC,OAAO,CAAC,EAAE,CAAC;wCACX,OAAO,CAAC,KAAK,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;wCAChD,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;oCACnB,CAAC;gCACH,CAAC;6BACF;yBACF;qBACF;iBACF;gBACH,CAAC,CAAC,EAAE,CAAC;SACR;QAED,oBAAC,WAAW,OAAG,CACK,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}
1
+ {"version":3,"file":"TreeSettingsMenu.js","sourceRoot":"","sources":["../../../src/components/header/TreeSettingsMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAA;AAC3D,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAA;AAI9D,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,EAC1C,KAAK,GAGN;IACC,MAAM,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IACtB,MAAM,WAAW,GAAG,IAAI,CAAC,MAAM,GAAG,sBAAsB,CAAA;IACxD,OAAO,CACL,oBAAC,mBAAmB,mBACN,oBAAoB,EAChC,OAAO,EAAC,eAAe,EACvB,mBAAmB,EAAE,KAAK,EAC1B,YAAY,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,eAAe,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,SAAS,EAAE;YACT,GAAG,qBAAqB,CAAC,KAAK,CAAC;YAC/B,GAAG,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC;gBAClB,CAAC,CAAC;oBACE;wBACE,KAAK,EAAE,UAAU;wBACjB,IAAI,EAAE,SAAkB;wBACxB,OAAO,EAAE;4BACP;gCACE,8DAA8D;gCAC9D,KAAK,EAAE,WAAW;oCAChB,CAAC,CAAC,yCAAyC,sBAAsB,sBAAsB;oCACvF,CAAC,CAAC,4CAA4C;gCAChD,QAAQ,EAAE,WAAW;gCACrB,OAAO,EAAE,GAAG,EAAE;oCACZ,IAAI,CAAC;wCACH,KAAK,CAAC,mCAAmC,EAAE,CAAA;oCAC7C,CAAC;oCAAC,OAAO,CAAC,EAAE,CAAC;wCACX,OAAO,CAAC,KAAK,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;wCAChD,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;oCACnB,CAAC;gCACH,CAAC;6BACF;yBACF;qBACF;iBACF;gBACH,CAAC,CAAC,EAAE,CAAC;SACR;QAED,oBAAC,WAAW,OAAG,CACK,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}
@@ -20,10 +20,8 @@ function size(bytes) {
20
20
  ? `${Math.round(bytes / 1000)} kB`
21
21
  : `${(bytes / 1_000_000).toFixed(1)} MB`;
22
22
  }
23
- // The viewer holds documents its own snapshot does not carry, and until this
24
- // existed it said nothing about it: the view worked, the URL quietly lost the
25
- // data, and whoever copied the link found out from the person who opened it.
26
- // See `unshareableData` on the model.
23
+ // Lists loaded documents the snapshot, and so a shared URL, omits. See
24
+ // `unshareableData` on the model.
27
25
  const UnshareableDataWarning = observer(function ({ model, }) {
28
26
  const { unshareableData } = model;
29
27
  const { classes } = useStyles();
@@ -1 +1 @@
1
- {"version":3,"file":"UnshareableDataWarning.js","sourceRoot":"","sources":["../../../src/components/header/UnshareableDataWarning.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,GAAG,EAAE,CAAC;QACN,MAAM,EAAE,MAAM;QACd,UAAU,EAAE,EAAE;QACd,UAAU,EAAE,QAAQ;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI;QACjC,MAAM,EAAE,MAAM;KACf;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,IAAI,CAAC,KAAa;IACzB,OAAO,KAAK,GAAG,SAAS;QACtB,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK;QAClC,CAAC,CAAC,GAAG,CAAC,KAAK,GAAG,SAAS,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAA;AAC5C,CAAC;AAED,6EAA6E;AAC7E,8EAA8E;AAC9E,6EAA6E;AAC7E,sCAAsC;AACtC,MAAM,sBAAsB,GAAG,QAAQ,CAAC,UAAU,EAChD,KAAK,GAGN;IACC,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,IAAI,eAAe,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACjC,OAAO,IAAI,CAAA;IACb,CAAC;IACD,MAAM,IAAI,GAAG,eAAe;SACzB,GAAG,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,GAAG,IAAI,KAAK,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC;SACpD,IAAI,CAAC,WAAW,CAAC,CAAA;IACpB,OAAO,CACL,oBAAC,OAAO,IACN,KAAK,EAAE,OAAO,IAAI,uKAAuK;QAEzL,oBAAC,UAAU,IAAC,SAAS,EAAC,KAAK,EAAC,SAAS,EAAE,OAAO,CAAC,OAAO;YACpD,oBAAC,OAAO,IAAC,QAAQ,EAAC,OAAO,GAAG;8BAEjB,CACL,CACX,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,sBAAsB,CAAA"}
1
+ {"version":3,"file":"UnshareableDataWarning.js","sourceRoot":"","sources":["../../../src/components/header/UnshareableDataWarning.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,GAAG,EAAE,CAAC;QACN,MAAM,EAAE,MAAM;QACd,UAAU,EAAE,EAAE;QACd,UAAU,EAAE,QAAQ;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI;QACjC,MAAM,EAAE,MAAM;KACf;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,IAAI,CAAC,KAAa;IACzB,OAAO,KAAK,GAAG,SAAS;QACtB,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK;QAClC,CAAC,CAAC,GAAG,CAAC,KAAK,GAAG,SAAS,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAA;AAC5C,CAAC;AAED,uEAAuE;AACvE,kCAAkC;AAClC,MAAM,sBAAsB,GAAG,QAAQ,CAAC,UAAU,EAChD,KAAK,GAGN;IACC,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,IAAI,eAAe,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACjC,OAAO,IAAI,CAAA;IACb,CAAC;IACD,MAAM,IAAI,GAAG,eAAe;SACzB,GAAG,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,GAAG,IAAI,KAAK,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC;SACpD,IAAI,CAAC,WAAW,CAAC,CAAA;IACpB,OAAO,CACL,oBAAC,OAAO,IACN,KAAK,EAAE,OAAO,IAAI,uKAAuK;QAEzL,oBAAC,UAAU,IAAC,SAAS,EAAC,KAAK,EAAC,SAAS,EAAE,OAAO,CAAC,OAAO;YACpD,oBAAC,OAAO,IAAC,QAAQ,EAAC,OAAO,GAAG;8BAEjB,CACL,CACX,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,sBAAsB,CAAA"}
@@ -1,10 +1,40 @@
1
1
  import React from 'react';
2
- import Mouse from '@mui/icons-material/Mouse';
2
+ import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
3
3
  import ZoomIn from '@mui/icons-material/ZoomIn';
4
4
  import ZoomOut from '@mui/icons-material/ZoomOut';
5
- import { IconButton, ToggleButton, Tooltip } from '@mui/material';
5
+ import { IconButton, Tooltip } from '@mui/material';
6
6
  import { observer } from 'mobx-react';
7
+ import { MouseScroll, MouseZoomBoth, MouseZoomHorizontal, MouseZoomVertical, } from './ScrollZoomIcons.js';
8
+ const scrollMode = {
9
+ label: 'Scrolls the alignment',
10
+ Icon: MouseScroll,
11
+ helpText: 'Ctrl+wheel zooms both axes at the cursor.',
12
+ };
13
+ const wheelModes = [
14
+ scrollMode,
15
+ {
16
+ label: 'Zooms both axes',
17
+ axis: 'both',
18
+ Icon: MouseZoomBoth,
19
+ helpText: 'Hold shift to pan while the wheel zooms.',
20
+ },
21
+ {
22
+ label: 'Zooms columns only',
23
+ axis: 'horizontal',
24
+ Icon: MouseZoomHorizontal,
25
+ helpText: 'Holds the row height, so the labels and letters stay at their size while the alignment compresses.',
26
+ },
27
+ {
28
+ label: 'Zooms rows only',
29
+ axis: 'vertical',
30
+ Icon: MouseZoomVertical,
31
+ helpText: 'Holds the column width, so the alignment stays as wide while the rows grow or shrink.',
32
+ },
33
+ ];
7
34
  const ZoomControls = observer(function ZoomControls({ model, }) {
35
+ const { scrollZoom, scrollZoomAxis } = model;
36
+ const activeAxis = scrollZoom ? scrollZoomAxis : undefined;
37
+ const current = wheelModes.find(m => m.axis === activeAxis) ?? scrollMode;
8
38
  return (React.createElement(React.Fragment, null,
9
39
  React.createElement(Tooltip, { title: "Zoom in" },
10
40
  React.createElement(IconButton, { "aria-label": "Zoom in", onClick: () => {
@@ -16,10 +46,23 @@ const ZoomControls = observer(function ZoomControls({ model, }) {
16
46
  model.zoomOut();
17
47
  } },
18
48
  React.createElement(ZoomOut, null))),
19
- React.createElement(ToggleButton, { value: "scrollZoom", selected: model.scrollZoom, "aria-label": "Toggle scroll-to-zoom", title: "Toggle scroll-to-zoom (zoom on plain mouse wheel; ctrl+wheel always zooms)", size: "small", sx: { border: 'none' }, onChange: () => {
20
- model.setScrollZoom(!model.scrollZoom);
21
- } },
22
- React.createElement(Mouse, null))));
49
+ React.createElement(CascadingMenuButton, { "data-testid": "scroll_zoom_menu", tooltip: `Mouse wheel: ${current.label.toLowerCase()} (ctrl+wheel always zooms)`, anchorOrigin: { vertical: 'bottom', horizontal: 'left' }, transformOrigin: { vertical: 'top', horizontal: 'left' }, menuItems: [
50
+ { type: 'subHeader', label: 'Mouse wheel' },
51
+ ...wheelModes.map(({ label, axis, Icon, helpText }) => ({
52
+ label,
53
+ icon: Icon,
54
+ helpText,
55
+ type: 'radio',
56
+ checked: current.label === label,
57
+ onClick: () => {
58
+ model.setScrollZoom(axis !== undefined);
59
+ if (axis !== undefined) {
60
+ model.setScrollZoomAxis(axis);
61
+ }
62
+ },
63
+ })),
64
+ ] },
65
+ React.createElement(current.Icon, null))));
23
66
  });
24
67
  export default ZoomControls;
25
68
  //# sourceMappingURL=ZoomControls.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/components/header/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,KAAK,MAAM,2BAA2B,CAAA;AAC7C,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AACjE,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,OAAO,CACL;QACE,oBAAC,OAAO,IAAC,KAAK,EAAC,SAAS;YACtB,oBAAC,UAAU,kBACE,SAAS,EACpB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,MAAM,EAAE,CAAA;gBAChB,CAAC;gBAED,oBAAC,MAAM,OAAG,CACC,CACL;QACV,oBAAC,OAAO,IAAC,KAAK,EAAC,UAAU;YACvB,oBAAC,UAAU,kBACE,UAAU,EACrB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,OAAO,EAAE,CAAA;gBACjB,CAAC;gBAED,oBAAC,OAAO,OAAG,CACA,CACL;QACV,oBAAC,YAAY,IACX,KAAK,EAAC,YAAY,EAClB,QAAQ,EAAE,KAAK,CAAC,UAAU,gBACf,uBAAuB,EAClC,KAAK,EAAC,4EAA4E,EAClF,IAAI,EAAC,OAAO,EACZ,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,EACtB,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,aAAa,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAA;YACxC,CAAC;YAED,oBAAC,KAAK,OAAG,CACI,CACd,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}
1
+ {"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/components/header/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,WAAW,EACX,aAAa,EACb,mBAAmB,EACnB,iBAAiB,GAClB,MAAM,sBAAuB,CAAA;AAa9B,MAAM,UAAU,GAAc;IAC5B,KAAK,EAAE,uBAAuB;IAC9B,IAAI,EAAE,WAAW;IACjB,QAAQ,EAAE,2CAA2C;CACtD,CAAA;AAED,MAAM,UAAU,GAAgB;IAC9B,UAAU;IACV;QACE,KAAK,EAAE,iBAAiB;QACxB,IAAI,EAAE,MAAM;QACZ,IAAI,EAAE,aAAa;QACnB,QAAQ,EAAE,0CAA0C;KACrD;IACD;QACE,KAAK,EAAE,oBAAoB;QAC3B,IAAI,EAAE,YAAY;QAClB,IAAI,EAAE,mBAAmB;QACzB,QAAQ,EACN,oGAAoG;KACvG;IACD;QACE,KAAK,EAAE,iBAAiB;QACxB,IAAI,EAAE,UAAU;QAChB,IAAI,EAAE,iBAAiB;QACvB,QAAQ,EACN,uFAAuF;KAC1F;CACF,CAAA;AAED,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,MAAM,EAAE,UAAU,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAC5C,MAAM,UAAU,GAAG,UAAU,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,SAAS,CAAA;IAC1D,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,UAAU,CAAC,IAAI,UAAU,CAAA;IACzE,OAAO,CACL;QACE,oBAAC,OAAO,IAAC,KAAK,EAAC,SAAS;YACtB,oBAAC,UAAU,kBACE,SAAS,EACpB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,MAAM,EAAE,CAAA;gBAChB,CAAC;gBAED,oBAAC,MAAM,OAAG,CACC,CACL;QACV,oBAAC,OAAO,IAAC,KAAK,EAAC,UAAU;YACvB,oBAAC,UAAU,kBACE,UAAU,EACrB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,OAAO,EAAE,CAAA;gBACjB,CAAC;gBAED,oBAAC,OAAO,OAAG,CACA,CACL;QACV,oBAAC,mBAAmB,mBACN,kBAAkB,EAC9B,OAAO,EAAE,gBAAgB,OAAO,CAAC,KAAK,CAAC,WAAW,EAAE,4BAA4B,EAChF,YAAY,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,eAAe,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,SAAS,EAAE;gBACT,EAAE,IAAI,EAAE,WAAW,EAAE,KAAK,EAAE,aAAa,EAAE;gBAC3C,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC,CAAC;oBACtD,KAAK;oBACL,IAAI,EAAE,IAAI;oBACV,QAAQ;oBACR,IAAI,EAAE,OAAgB;oBACtB,OAAO,EAAE,OAAO,CAAC,KAAK,KAAK,KAAK;oBAChC,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,aAAa,CAAC,IAAI,KAAK,SAAS,CAAC,CAAA;wBACvC,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;4BACvB,KAAK,CAAC,iBAAiB,CAAC,IAAI,CAAC,CAAA;wBAC/B,CAAC;oBACH,CAAC;iBACF,CAAC,CAAC;aACJ;YAED,oBAAC,OAAO,CAAC,IAAI,OAAG,CACI,CACrB,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}
@@ -24,12 +24,9 @@ export function getAnnotationsMenu({ model }) {
24
24
  ]);
25
25
  },
26
26
  },
27
- // The viewer used to submit the whole alignment to the EBI iprscan5 queue
28
- // and poll it for about fifteen minutes, capped at 140 rows and under a
29
- // hardcoded email address. `react-msaview-cli interpro` answers the same
30
- // question from InterPro's precomputed matches in seconds, and
31
- // `interproscan` covers rows InterPro has not seen. Neither belongs in a
32
- // browser tab, so this points at the page that walks through them.
27
+ // `react-msaview-cli interpro` reads InterPro's precomputed matches in
28
+ // seconds, and `interproscan` covers rows InterPro has not seen; this links
29
+ // the tutorial for both
33
30
  {
34
31
  label: 'How to get a domain file...',
35
32
  icon: MenuBook,
@@ -1 +1 @@
1
- {"version":3,"file":"getAnnotationsMenu.js","sourceRoot":"","sources":["../../../src/components/header/getAnnotationsMenu.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,SAAS,MAAM,+BAA+B,CAAA;AACrD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,UAAU,MAAM,gCAAgC,CAAA;AAIvD,MAAM,mBAAmB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,6BAA8B,CAAC,CAAC,CAAA;AAC9E,MAAM,oBAAoB,GAAG,IAAI,CAC/B,GAAG,EAAE,CAAC,MAAM,CAAC,oCAAqC,CAAC,CACpD,CAAA;AAED,MAAM,eAAe,GAAG,sDAAsD,CAAA;AAE9E,MAAM,UAAU,kBAAkB,CAAC,EAAE,KAAK,EAA2B;IACnE,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,cAAc,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC7E,MAAM,UAAU,GAAG,SAAS,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,EAAE,CAAA;IACpD,OAAO;QACL;YACE,KAAK,EAAE,yBAAyB;YAChC,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;oBAC/B,oBAAoB;oBACpB;wBACE,WAAW;wBACX,KAAK;qBACN;iBACF,CAAC,CAAA;YACJ,CAAC;SACF;QACD,0EAA0E;QAC1E,wEAAwE;QACxE,yEAAyE;QACzE,+DAA+D;QAC/D,yEAAyE;QACzE,mEAAmE;QACnE;YACE,KAAK,EAAE,6BAA6B;YACpC,IAAI,EAAE,QAAQ;YACd,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,IAAI,CAAC,eAAe,EAAE,QAAQ,EAAE,qBAAqB,CAAC,CAAA;YAC/D,CAAC;SACF;QACD;YACE,KAAK,EAAE,mBAAmB,UAAU,EAAE;YACtC,QAAQ,EAAE,SAAS;YACnB,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,mBAAmB;YAC5B,IAAI,EAAE,UAAmB;YACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,CAAC,CAAC,WAAW,CAAC,CAAA;YACpC,CAAC;SACF;QACD;YACE,KAAK,EAAE,qBAAqB,UAAU,EAAE;YACxC,QAAQ,EAAE,SAAS;YACnB,OAAO,EAAE,mBAAmB,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK;YACrD,IAAI,EAAE,IAAI;YACV,IAAI,EAAE,UAAmB;YACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;YAC1C,CAAC;SACF;QACD;YACE,KAAK,EAAE,qBAAqB,UAAU,EAAE;YACxC,IAAI,EAAE,SAAS;YACf,QAAQ,EAAE,SAAS;YACnB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;oBAC3B,mBAAmB;oBACnB;wBACE,OAAO;wBACP,KAAK;qBACN;iBACF,CAAC,CAAA;YACJ,CAAC;SACF;KACF,CAAA;AACH,CAAC"}
1
+ {"version":3,"file":"getAnnotationsMenu.js","sourceRoot":"","sources":["../../../src/components/header/getAnnotationsMenu.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,SAAS,MAAM,+BAA+B,CAAA;AACrD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,UAAU,MAAM,gCAAgC,CAAA;AAIvD,MAAM,mBAAmB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,6BAA8B,CAAC,CAAC,CAAA;AAC9E,MAAM,oBAAoB,GAAG,IAAI,CAC/B,GAAG,EAAE,CAAC,MAAM,CAAC,oCAAqC,CAAC,CACpD,CAAA;AAED,MAAM,eAAe,GAAG,sDAAsD,CAAA;AAE9E,MAAM,UAAU,kBAAkB,CAAC,EAAE,KAAK,EAA2B;IACnE,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,cAAc,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC7E,MAAM,UAAU,GAAG,SAAS,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,EAAE,CAAA;IACpD,OAAO;QACL;YACE,KAAK,EAAE,yBAAyB;YAChC,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;oBAC/B,oBAAoB;oBACpB;wBACE,WAAW;wBACX,KAAK;qBACN;iBACF,CAAC,CAAA;YACJ,CAAC;SACF;QACD,uEAAuE;QACvE,4EAA4E;QAC5E,wBAAwB;QACxB;YACE,KAAK,EAAE,6BAA6B;YACpC,IAAI,EAAE,QAAQ;YACd,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,IAAI,CAAC,eAAe,EAAE,QAAQ,EAAE,qBAAqB,CAAC,CAAA;YAC/D,CAAC;SACF;QACD;YACE,KAAK,EAAE,mBAAmB,UAAU,EAAE;YACtC,QAAQ,EAAE,SAAS;YACnB,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,mBAAmB;YAC5B,IAAI,EAAE,UAAmB;YACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,CAAC,CAAC,WAAW,CAAC,CAAA;YACpC,CAAC;SACF;QACD;YACE,KAAK,EAAE,qBAAqB,UAAU,EAAE;YACxC,QAAQ,EAAE,SAAS;YACnB,OAAO,EAAE,mBAAmB,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK;YACrD,IAAI,EAAE,IAAI;YACV,IAAI,EAAE,UAAmB;YACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;YAC1C,CAAC;SACF;QACD;YACE,KAAK,EAAE,qBAAqB,UAAU,EAAE;YACxC,IAAI,EAAE,SAAS;YACf,QAAQ,EAAE,SAAS;YACnB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;oBAC3B,mBAAmB;oBACnB;wBACE,OAAO;wBACP,KAAK;qBACN;iBACF,CAAC,CAAA;YACJ,CAAC;SACF;KACF,CAAA;AACH,CAAC"}
@@ -8,9 +8,7 @@ function toggle(label, checked, set) {
8
8
  },
9
9
  };
10
10
  }
11
- // Every track the alignment can show, with its current state. Without this the
12
- // "Close" item on a track's own dropdown is a one-way door -- there is nowhere
13
- // else in the UI to turn a track back on.
11
+ // the only place in the UI to turn a hidden track back on
14
12
  function tracksSubMenu(model) {
15
13
  const shown = new Set(model.turnedOnTracks.map(t => t.model.id));
16
14
  return model.tracks.map(({ model: { id, name } }) => toggle(name, shown.has(id), () => {
@@ -26,24 +24,23 @@ export function msaSettingsMenuItems(model) {
26
24
  subMenu: tracksSubMenu(model),
27
25
  },
28
26
  { type: 'divider' },
29
- toggle('Show column statistics on hover', showColumnStats, arg => {
27
+ toggle('Show track values on hover', showColumnStats, arg => {
30
28
  model.setShowColumnStats(arg);
31
29
  }),
32
30
  toggle('Draw letters', drawMsaLetters, arg => {
33
31
  model.setDrawMsaLetters(arg);
34
32
  }),
35
- // the checkbox reads as the inverse of the property it sets: bgColor draws
36
- // the tile, and turning it off is what leaves the letter itself colored
37
- toggle('Color letters instead of background of tiles', !bgColor, arg => {
33
+ // inverted: bgColor colors the tile, and off colors the letter
34
+ toggle('Color letters, not cells', !bgColor, arg => {
38
35
  model.setBgColor(!arg);
39
36
  }),
40
- toggle('Enable hiding gappy columns?', hideGaps, arg => {
37
+ toggle('Hide gappy columns', hideGaps, arg => {
41
38
  model.setHideGaps(arg);
42
39
  }),
43
40
  ];
44
41
  }
45
42
  export function treeSettingsMenuItems(model) {
46
- const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, drawLabels, } = model;
43
+ const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, drawNodeLabels, drawLabels, showTreeOverview, } = model;
47
44
  return [
48
45
  toggle('Show branch length', showBranchLen, arg => {
49
46
  model.setShowBranchLen(arg);
@@ -54,6 +51,12 @@ export function treeSettingsMenuItems(model) {
54
51
  toggle('Draw bubbles on tree branches', drawNodeBubbles, arg => {
55
52
  model.setDrawNodeBubbles(arg);
56
53
  }),
54
+ toggle('Draw internal node labels', drawNodeLabels, arg => {
55
+ model.setDrawNodeLabels(arg);
56
+ }),
57
+ toggle('Show tree overview', showTreeOverview, arg => {
58
+ model.setShowTreeOverview(arg);
59
+ }),
57
60
  toggle('Tree labels align right', labelsAlignRight, arg => {
58
61
  model.setLabelsAlignRight(arg);
59
62
  }),
@@ -1 +1 @@
1
- {"version":3,"file":"settingsMenuItems.js","sourceRoot":"","sources":["../../../src/components/header/settingsMenuItems.ts"],"names":[],"mappings":"AAGA,SAAS,MAAM,CAAC,KAAa,EAAE,OAAgB,EAAE,GAA2B;IAC1E,OAAO;QACL,KAAK;QACL,IAAI,EAAE,UAAmB;QACzB,OAAO;QACP,OAAO,EAAE,GAAG,EAAE;YACZ,GAAG,CAAC,CAAC,OAAO,CAAC,CAAA;QACf,CAAC;KACF,CAAA;AACH,CAAC;AAED,+EAA+E;AAC/E,+EAA+E;AAC/E,0CAA0C;AAC1C,SAAS,aAAa,CAAC,KAAmB;IACxC,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAA;IAChE,OAAO,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,CAClD,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE;QAC/B,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;IACvB,CAAC,CAAC,CACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,KAAmB;IACtD,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACpE,OAAO;QACL;YACE,KAAK,EAAE,QAAQ;YACf,IAAI,EAAE,SAAkB;YACxB,OAAO,EAAE,aAAa,CAAC,KAAK,CAAC;SAC9B;QACD,EAAE,IAAI,EAAE,SAAkB,EAAE;QAC5B,MAAM,CAAC,iCAAiC,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC/D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,cAAc,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,2EAA2E;QAC3E,wEAAwE;QACxE,MAAM,CAAC,8CAA8C,EAAE,CAAC,OAAO,EAAE,GAAG,CAAC,EAAE;YACrE,KAAK,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,8BAA8B,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YACrD,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;KACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,KAAmB;IACvD,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,UAAU,GACX,GAAG,KAAK,CAAA;IACT,OAAO;QACL,MAAM,CAAC,oBAAoB,EAAE,aAAa,EAAE,GAAG,CAAC,EAAE;YAChD,KAAK,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAA;QAC7B,CAAC,CAAC;QACF,MAAM,CAAC,WAAW,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAClC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,+BAA+B,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC7D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,yBAAyB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,aAAa,EAAE,UAAU,EAAE,GAAG,CAAC,EAAE;YACtC,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;QAC1B,CAAC,CAAC;KACH,CAAA;AACH,CAAC"}
1
+ {"version":3,"file":"settingsMenuItems.js","sourceRoot":"","sources":["../../../src/components/header/settingsMenuItems.ts"],"names":[],"mappings":"AAGA,SAAS,MAAM,CAAC,KAAa,EAAE,OAAgB,EAAE,GAA2B;IAC1E,OAAO;QACL,KAAK;QACL,IAAI,EAAE,UAAmB;QACzB,OAAO;QACP,OAAO,EAAE,GAAG,EAAE;YACZ,GAAG,CAAC,CAAC,OAAO,CAAC,CAAA;QACf,CAAC;KACF,CAAA;AACH,CAAC;AAED,0DAA0D;AAC1D,SAAS,aAAa,CAAC,KAAmB;IACxC,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAA;IAChE,OAAO,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,CAClD,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE;QAC/B,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;IACvB,CAAC,CAAC,CACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,KAAmB;IACtD,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACpE,OAAO;QACL;YACE,KAAK,EAAE,QAAQ;YACf,IAAI,EAAE,SAAkB;YACxB,OAAO,EAAE,aAAa,CAAC,KAAK,CAAC;SAC9B;QACD,EAAE,IAAI,EAAE,SAAkB,EAAE;QAC5B,MAAM,CAAC,4BAA4B,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC1D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,cAAc,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,+DAA+D;QAC/D,MAAM,CAAC,0BAA0B,EAAE,CAAC,OAAO,EAAE,GAAG,CAAC,EAAE;YACjD,KAAK,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,oBAAoB,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;KACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,KAAmB;IACvD,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,UAAU,EACV,gBAAgB,GACjB,GAAG,KAAK,CAAA;IACT,OAAO;QACL,MAAM,CAAC,oBAAoB,EAAE,aAAa,EAAE,GAAG,CAAC,EAAE;YAChD,KAAK,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAA;QAC7B,CAAC,CAAC;QACF,MAAM,CAAC,WAAW,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAClC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,+BAA+B,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC7D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,2BAA2B,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,MAAM,CAAC,oBAAoB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACnD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,yBAAyB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,aAAa,EAAE,UAAU,EAAE,GAAG,CAAC,EAAE;YACtC,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;QAC1B,CAAC,CAAC;KACH,CAAA;AACH,CAAC"}
@@ -13,7 +13,7 @@ const ImportForm = observer(function ({ model }) {
13
13
  React.createElement("div", { style: { width: '50%' } },
14
14
  error ? React.createElement(ErrorMessage, { error: error }) : null,
15
15
  React.createElement(Typography, null, "Open an MSA file (FASTA, Stockholm, Clustal, A3M or EMF format) and/or a tree file (Newick format)."),
16
- React.createElement(Typography, { color: "error" }, "Note: you can open up just an MSA or just a tree, both are not required. Some MSA files e.g. stockholm format have an embedded tree also and this is fine, and opening a separate tree file is not required.")),
16
+ React.createElement(Typography, { color: "text.secondary" }, "An MSA alone or a tree alone is enough, and a Stockholm file with an embedded tree needs no separate tree file.")),
17
17
  React.createElement("div", { style: {
18
18
  display: 'flex',
19
19
  justifyContent: 'center',
@@ -1 +1 @@
1
- {"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/components/import/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC7D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,kBAAkB,MAAM,yBAA0B,CAAA;AACzD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAA;AAKhC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,CACL,oBAAC,SAAS;QACR,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE;YACzB,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,8GAGE;YACb,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,mNAKZ,CACT;QAEN,6BACE,KAAK,EAAE;gBACL,OAAO,EAAE,MAAM;gBACf,cAAc,EAAE,QAAQ;gBACxB,UAAU,EAAE,QAAQ;gBACpB,GAAG,EAAE,EAAE;aACR;YAED;gBACE;oBACE,oBAAC,UAAU,0BAA6B;oBACxC,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD;gBACN;oBACE,oBAAC,UAAU,2BAA8B;oBACzC,oBAAC,YAAY,IAAC,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,WAAW,GAAI,CAC1D;gBACN;oBACE,oBAAC,UAAU,gDAAmD;oBAC9D,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD,CACF;YACN;gBACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAI,CAAC;4BACH,IAAI,CAAC,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;wBACzC,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,OAAO,IAAI,CAAC,QAAQ,WAGxB,CACL;YAEN;gBACE,oBAAC,UAAU,mBAAsB;gBACjC,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAChC,CACF,CACI,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
1
+ {"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/components/import/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC7D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,kBAAkB,MAAM,yBAA0B,CAAA;AACzD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAA;AAKhC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,CACL,oBAAC,SAAS;QACR,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE;YACzB,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,8GAGE;YACb,oBAAC,UAAU,IAAC,KAAK,EAAC,gBAAgB,sHAGrB,CACT;QAEN,6BACE,KAAK,EAAE;gBACL,OAAO,EAAE,MAAM;gBACf,cAAc,EAAE,QAAQ;gBACxB,UAAU,EAAE,QAAQ;gBACpB,GAAG,EAAE,EAAE;aACR;YAED;gBACE;oBACE,oBAAC,UAAU,0BAA6B;oBACxC,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD;gBACN;oBACE,oBAAC,UAAU,2BAA8B;oBACzC,oBAAC,YAAY,IAAC,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,WAAW,GAAI,CAC1D;gBACN;oBACE,oBAAC,UAAU,gDAAmD;oBAC9D,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD,CACF;YACN;gBACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAI,CAAC;4BACH,IAAI,CAAC,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;wBACzC,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,OAAO,IAAI,CAAC,QAAQ,WAGxB,CACL;YAEN;gBACE,oBAAC,UAAU,mBAAsB;gBACjC,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAChC,CACF,CACI,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
@@ -8,8 +8,7 @@ export function load(model, msaFile, treeFile, gffFile) {
8
8
  }
9
9
  if (gffFile) {
10
10
  model.setGFFFilehandle(gffFile);
11
- // asked for by hand, so drawn -- even if the reader hid the overlay
12
- // earlier in this view
11
+ // a file opened by hand shows even if the overlay was hidden earlier
13
12
  model.setShowDomains(true);
14
13
  }
15
14
  }
@@ -1 +1 @@
1
- {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/components/import/util.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,IAAI,CAClB,KAAmB,EACnB,OAAsB,EACtB,QAAuB,EACvB,OAAsB;IAEtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;IACzB,IAAI,OAAO,EAAE,CAAC;QACZ,KAAK,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAA;IACjC,CAAC;IACD,IAAI,QAAQ,EAAE,CAAC;QACb,KAAK,CAAC,iBAAiB,CAAC,QAAQ,CAAC,CAAA;IACnC,CAAC;IACD,IAAI,OAAO,EAAE,CAAC;QACZ,KAAK,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAA;QAC/B,oEAAoE;QACpE,uBAAuB;QACvB,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;IAC5B,CAAC;AACH,CAAC"}
1
+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/components/import/util.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,IAAI,CAClB,KAAmB,EACnB,OAAsB,EACtB,QAAuB,EACvB,OAAsB;IAEtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;IACzB,IAAI,OAAO,EAAE,CAAC;QACZ,KAAK,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAA;IACjC,CAAC;IACD,IAAI,QAAQ,EAAE,CAAC;QACb,KAAK,CAAC,iBAAiB,CAAC,QAAQ,CAAC,CAAA;IACnC,CAAC;IACD,IAAI,OAAO,EAAE,CAAC;QACZ,KAAK,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAA;QAC/B,qEAAqE;QACrE,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;IAC5B,CAAC;AACH,CAAC"}
@@ -9,8 +9,7 @@ const Minimap = observer(function ({ model }) {
9
9
  const { minimapHeight, msaCanvasWidth, highResScaleFactor } = model;
10
10
  const theme = useTheme();
11
11
  const { unit, s, w, polygonHeight, polygonPoints } = getMinimapLayout(model);
12
- // the whole alignment, sampled down to the bar: it says where the conserved
13
- // blocks and the gappy stretches are, which is what a scroll aims at
12
+ // the whole alignment, sampled down to the bar
14
13
  const barWidth = Math.round(msaCanvasWidth * highResScaleFactor);
15
14
  const barHeight = Math.round(MINIMAP_BAR_HEIGHT * highResScaleFactor);
16
15
  const ref = useCanvasAutorun({