react-msaview 7.0.0 → 8.1.0

package/dist/components/tree/renderTreeCanvas.js

@@ -1,7 +1,8 @@
-import { calcDepthToLeaf } from '../../hierarchy.js';
+import { calcDepthToLeaf, nodeCoveringRows } from '../../hierarchy.js';
 import { setFontSize } from '../../setFontSize.js';
 import { getVisibleLeaves } from '../getVisibleLeaves.js';
 import { drawHighlightLabel, highlightLabelHeight, highlightRowFill, } from '../msa/renderHighlights.js';
+import { bracketBarWidth, bracketGap } from './cladeBrackets.js';
 const radius = 2.5;
 const d = radius * 2;
 // How far outside a block a node's row-center can sit and still draw into it: a
@@ -17,12 +18,12 @@ function inYBlock(y, offsetY, by, pad) {
 }
 /**
  * Every node whose subtree reaches into the block, skipping the subtrees that
- * do not. A subtree's leaves are one contiguous run of rows -- clusterLayout
- * records the run as xMin/xMax -- so a block of a 200k-tip tree visits a few
- * dozen nodes instead of every one of them, three times over.
+ * do not. A subtree's leaves are one contiguous run of rows, recorded by
+ * clusterLayout as xMin/xMax, so a block of a 200k-tip tree visits a few dozen
+ * nodes.
  *
- * A link out of a visited node is still drawn even when the child it reaches is
- * pruned, which is what keeps a branch that crosses the block from vanishing.
+ * A link out of a visited node is drawn even when its child is pruned, so a
+ * branch crossing the block stays visible.
  */
 function forEachNodeInBlock(root, offsetY, by, pad, cb) {
     const top = offsetY - pad;
@@ -57,9 +58,10 @@ export function getNodeX(node, showBranchLen, tipX, maxDepthToLeaf) {
     return ((maxDepthToLeaf - depthToLeaf) / maxDepthToLeaf) * tipX;
 }
 function renderTree({ offsetY, ctx, model, theme, tipX, maxDepthToLeaf, blockSizeYOverride, }) {
-    const { hierarchy, showBranchLenEffective: showBranchLen, blockSize } = model;
+    const { hierarchy, showBranchLenEffective: showBranchLen, blockSize, branchColors, } = model;
     const by = blockSizeYOverride ?? blockSize;
-    ctx.strokeStyle = theme.palette.text.primary;
+    const defaultStroke = theme.palette.text.primary;
+    ctx.strokeStyle = defaultStroke;
     forEachNodeInBlock(hierarchy, offsetY, by, blockPad(model), source => {
         const sy = source.x;
         const sx = getNodeX(source, showBranchLen, tipX, maxDepthToLeaf);
@@ -78,6 +80,10 @@ function renderTree({ offsetY, ctx, model, theme, tipX, maxDepthToLeaf, blockSiz
             // optimization that allows us to skip drawing most tree links outside the
             // block
             if (offsetY + by >= y1 && y2 >= offsetY) {
+                // the edge belongs to the child, whose id the branch channel colors
+                if (branchColors) {
+                    ctx.strokeStyle = branchColors.get(target.data.id) ?? defaultStroke;
+                }
                 ctx.beginPath();
                 ctx.moveTo(sx, sy);
                 ctx.lineTo(sx, ty);
@@ -86,9 +92,10 @@ function renderTree({ offsetY, ctx, model, theme, tipX, maxDepthToLeaf, blockSiz
             }
         }
     });
+    ctx.strokeStyle = defaultStroke;
 }
 function renderCollapsedTriangles({ ctx, clickMap, offsetY, model, theme, tipX, maxDepthToLeaf, blockSizeYOverride, collapsedSet, }) {
-    const { hierarchy, showBranchLenEffective: showBranchLen, blockSize, rowHeight, fontSize, marginLeft: ml, } = model;
+    const { hierarchy, showBranchLenEffective: showBranchLen, blockSize, rowHeight, fontSize, marginLeft: ml, branchColors, } = model;
     // nothing collapsed is the common case, and the traversal below visits every
     // node in the tree on every block of every redraw
     if (collapsedSet.size === 0) {
@@ -111,7 +118,7 @@ function renderCollapsedTriangles({ ctx, clickMap, offsetY, model, theme, tipX,
                 ctx.lineTo(baseX, y - halfHeight);
                 ctx.lineTo(baseX, y + halfHeight);
                 ctx.closePath();
-                ctx.fillStyle = theme.palette.action.disabled;
+                ctx.fillStyle = branchColors?.get(id) ?? theme.palette.action.disabled;
                 ctx.fill();
                 ctx.strokeStyle = theme.palette.text.primary;
                 ctx.stroke();
@@ -141,7 +148,7 @@ function renderCollapsedTriangles({ ctx, clickMap, offsetY, model, theme, tipX,
 }
 // the bubbles are click targets whether or not they are painted, so this pass
 // always runs and `draw` only decides whether it also strokes the circles
-function renderNodeBubbles({ ctx, clickMap, offsetY, model, tipX, maxDepthToLeaf, blockSizeYOverride, collapsedSet, draw, }) {
+function renderNodeBubbles({ ctx, theme, clickMap, offsetY, model, tipX, maxDepthToLeaf, blockSizeYOverride, collapsedSet, draw, }) {
     const { hierarchy, showBranchLenEffective: showBranchLen, blockSize, marginLeft: ml, } = model;
     const by = blockSizeYOverride ?? blockSize;
     forEachNodeInBlock(hierarchy, offsetY, by, blockPad(model), node => {
@@ -155,8 +162,10 @@ function renderNodeBubbles({ ctx, clickMap, offsetY, model, tipX, maxDepthToLeaf
         if (node.height >= 1 && inYBlock(y, offsetY, by, blockPad(model))) {
             const isCollapsed = collapsedSet.has(id);
             if (draw) {
-                ctx.strokeStyle = 'black';
-                ctx.fillStyle = isCollapsed ? 'black' : 'white';
+                ctx.strokeStyle = theme.palette.text.primary;
+                ctx.fillStyle = isCollapsed
+                    ? theme.palette.text.primary
+                    : theme.palette.background.default;
                 ctx.beginPath();
                 ctx.arc(x, y, radius, 0, 2 * Math.PI);
                 ctx.fill();
@@ -178,8 +187,33 @@ function renderNodeBubbles({ ctx, clickMap, offsetY, model, tipX, maxDepthToLeaf
         }
     });
 }
+// The label a newick file puts on an internal node, which is where a bootstrap
+// or posterior support value lands: ((A,B)95,(C,D)80);. withId falls back to the
+// path-derived id for an unnamed node, so a node whose name is its id has no
+// label of its own and an ungated pass prints node-0-1-1 across the tree.
+function renderNodeLabels({ ctx, theme, offsetY, model, tipX, maxDepthToLeaf, blockSizeYOverride, }) {
+    const { hierarchy, showBranchLenEffective: showBranchLen, blockSize, fontSize, } = model;
+    const by = blockSizeYOverride ?? blockSize;
+    const pad = blockPad(model);
+    setFontSize(ctx, Math.max(6, fontSize - 3));
+    ctx.fillStyle = theme.palette.text.primary;
+    ctx.textAlign = 'right';
+    forEachNodeInBlock(hierarchy, offsetY, by, pad, node => {
+        const { id, name } = node.data;
+        if (node.height < 1 || name === id) {
+            return;
+        }
+        const x = getNodeX(node, showBranchLen, tipX, maxDepthToLeaf);
+        const y = node.x;
+        if (x !== undefined && inYBlock(y, offsetY, by, pad)) {
+            ctx.fillText(name, x - radius - 1, y - radius - 1);
+        }
+    });
+    ctx.textAlign = 'start';
+    setFontSize(ctx, fontSize);
+}
 function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, tipX, maxDepthToLeaf, blockSizeYOverride, collapsedSet, }) {
-    const { fontSize, showBranchLenEffective: showBranchLen, treeMetadata, blockSize, labelsAlignRight, drawTree, treeAreaWidthMinusMargin, marginLeft, noTree, labelWidthMap, labelWidthScale, } = model;
+    const { fontSize, showBranchLenEffective: showBranchLen, tipLabelColors, blockSize, labelsAlignRight, drawTree, treeAreaWidthMinusMargin, marginLeft, noTree, labelWidthMap, labelWidthScale, } = model;
     const by = blockSizeYOverride ?? blockSize;
     // labels only exist for leaves, which are laid out top to bottom, so take the
     // same slice the MSA renderer uses instead of walking every tip per block
@@ -197,12 +231,13 @@ function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, tipX, maxDepth
     for (const node of visibleLeaves) {
         const { data: { name, id }, } = node;
         const y = node.x;
-        const displayName = treeMetadata[name]?.genome || name;
+        const displayName = model.rowDataOf(name)?.genome || name;
         // a collapsed clade is drawn as a triangle + tip count; suppress its leaf
         // label when the "name" is just the auto-generated internal-node id
         const isAnonymousCollapsed = collapsedSet.has(id) && name === id;
         if (!isAnonymousCollapsed && inYBlock(y, offsetY, by, pad)) {
-            // note: +rowHeight/4 matches with -rowHeight/4 in msa
+            // fontSize/4 below the row center, the baseline the alignment letters
+            // share
             const yp = y + fontSize / 4;
             let xp = 0;
             if (!noTree) {
@@ -212,7 +247,7 @@ function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, tipX, maxDepth
             const width = measured === undefined
                 ? ctx.measureText(displayName).width
                 : measured * labelWidthScale;
-            ctx.fillStyle = theme.palette.text.primary;
+            ctx.fillStyle = tipLabelColors?.get(name) ?? theme.palette.text.primary;
             if (labelsAlignRight) {
                 const smallPadding = 2;
                 const offset = treeAreaWidthMinusMargin - smallPadding;
@@ -254,22 +289,101 @@ function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, tipX, maxDepth
     }
     ctx.setLineDash([]);
 }
-// the row sets of `highlights`, tinted across the tree area under the labels
-// with the label in the gutter at the first row of each set
+// the first row of a set, as a loop: spreading into Math.min passes one
+// argument per row, and the ~125k argument limit throws RangeError on a set
+// covering the 230k-tip COVID tree
+function firstRow(rowIndices) {
+    let min = Infinity;
+    for (const index of rowIndices) {
+        if (index < min) {
+            min = index;
+        }
+    }
+    return min;
+}
+// the highlight mark of the `clades` layer: a translucent rectangle from the
+// clade's common ancestor to the right edge of the tree area, under the
+// branches. A clade spanning hundreds of rows crosses several blocks, so each
+// block draws the whole rectangle and the canvas takes the part that is its.
+function renderCladeHighlights({ ctx, model, offsetY, tipX, maxDepthToLeaf, blockSizeYOverride, }) {
+    const { resolvedClades, hierarchy, showBranchLenEffective: showBranchLen, rowHeight, treeAreaWidth, marginLeft, blockSize, } = model;
+    const by = blockSizeYOverride ?? blockSize;
+    const right = treeAreaWidth - marginLeft;
+    for (const { rows, color, mark } of resolvedClades) {
+        if (mark !== 'highlight') {
+            continue;
+        }
+        const top = rows[0] * rowHeight;
+        const bottom = (rows[1] + 1) * rowHeight;
+        if (bottom < offsetY || top > offsetY + by) {
+            continue;
+        }
+        const node = nodeCoveringRows(hierarchy, top + rowHeight / 2, bottom - rowHeight / 2);
+        const x = getNodeX(node, showBranchLen, tipX, maxDepthToLeaf) ?? 0;
+        ctx.fillStyle = color;
+        ctx.fillRect(x, top, right - x, bottom - top);
+    }
+}
+// the bar of the bracket mark, in the gutter `cladeGutterWidth` reserves at the
+// right of the tree area. The label beside it is DOM text on screen and a
+// <text> in the export, since the canvas layer has no rotation.
+function renderCladeBrackets({ ctx, model, theme, offsetY, blockSizeYOverride, }) {
+    const { resolvedClades, cladeGutterWidth, rowHeight, treeAreaWidth, marginLeft, blockSize, } = model;
+    if (cladeGutterWidth === 0) {
+        return;
+    }
+    const by = blockSizeYOverride ?? blockSize;
+    const x = treeAreaWidth -
+        marginLeft -
+        cladeGutterWidth +
+        bracketGap +
+        bracketBarWidth / 2;
+    ctx.lineWidth = bracketBarWidth;
+    for (const { rows, mark, markColor } of resolvedClades) {
+        const top = rows[0] * rowHeight + 1;
+        const bottom = (rows[1] + 1) * rowHeight - 1;
+        if (mark !== 'bracket' || bottom < offsetY || top > offsetY + by) {
+            continue;
+        }
+        ctx.strokeStyle = markColor ?? theme.palette.text.primary;
+        ctx.beginPath();
+        ctx.moveTo(x, top);
+        ctx.lineTo(x, bottom);
+        ctx.stroke();
+    }
+    ctx.lineWidth = 1;
+    ctx.strokeStyle = theme.palette.text.primary;
+}
+// the `rowTint` encoding and the row sets of `highlights`, washed across the
+// tree area under the labels, with each set's label in the gutter at its first
+// row
 function renderRowHighlights({ ctx, model, theme, offsetY, blockSizeYOverride, }) {
-    const { resolvedHighlights, rowHeight, treeAreaWidth, marginLeft, blockSize, } = model;
+    const { resolvedHighlights, rowTints, rowHeight, treeAreaWidth, marginLeft, blockSize, } = model;
     const by = blockSizeYOverride ?? blockSize;
     const pad = blockPad(model);
     const placed = [];
+    const fillRow = (index) => {
+        ctx.fillRect(-marginLeft, index * rowHeight, treeAreaWidth, rowHeight);
+    };
+    if (rowTints) {
+        const top = Math.max(0, Math.floor((offsetY - pad) / rowHeight));
+        const bottom = Math.min(rowTints.length - 1, Math.ceil((offsetY + by + pad) / rowHeight));
+        for (let index = top; index <= bottom; index++) {
+            const color = rowTints[index];
+            if (color) {
+                ctx.fillStyle = color;
+                fillRow(index);
+            }
+        }
+    }
     for (const { rowIndices, label, color } of resolvedHighlights) {
         ctx.fillStyle = color ?? highlightRowFill;
         for (const index of rowIndices) {
-            const y = index * rowHeight;
-            if (inYBlock(y + rowHeight / 2, offsetY, by, pad)) {
-                ctx.fillRect(-marginLeft, y, treeAreaWidth, rowHeight);
+            if (inYBlock(index * rowHeight + rowHeight / 2, offsetY, by, pad)) {
+                fillRow(index);
             }
         }
-        const first = Math.min(...rowIndices);
+        const first = firstRow(rowIndices);
         if (label &&
             rowIndices.length &&
             inYBlock(first * rowHeight, offsetY, by, pad)) {
@@ -289,7 +403,7 @@ function renderRowHighlights({ ctx, model, theme, offsetY, blockSizeYOverride, }
 export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highResScaleFactorOverride, blockSizeYOverride, }) {
     clickMap?.clear();
     // Defer the finish call until after all inserts are done
-    const { noTree, drawTree, drawNodeBubbles, highResScaleFactor, fontSize, showTreeText, marginLeft, 
+    const { noTree, drawTree, drawNodeBubbles, drawNodeLabels, highResScaleFactor, fontSize, showTreeText, marginLeft, 
     // eslint-disable-next-line  @typescript-eslint/no-unused-vars
     rowHeight: _rowHeight, // read so the draw autorun re-fires after a zoom change
      } = model;
@@ -310,6 +424,14 @@ export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highRes
     // built once for all three passes: each of them asks about a different node on
     // every block of every redraw, and `collapsed` is a list
     const collapsedSet = new Set(model.collapsed);
+    renderCladeHighlights({
+        ctx,
+        model,
+        offsetY,
+        tipX,
+        maxDepthToLeaf,
+        blockSizeYOverride,
+    });
     renderRowHighlights({ ctx, model, theme, offsetY, blockSizeYOverride });
     setFontSize(ctx, fontSize);
     if (!noTree && drawTree) {
@@ -335,6 +457,7 @@ export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highRes
         });
         renderNodeBubbles({
             ctx,
+            theme,
             offsetY,
             clickMap,
             model,
@@ -344,6 +467,17 @@ export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highRes
             collapsedSet,
             draw: drawNodeBubbles,
         });
+        if (drawNodeLabels) {
+            renderNodeLabels({
+                ctx,
+                theme,
+                offsetY,
+                model,
+                tipX,
+                maxDepthToLeaf,
+                blockSizeYOverride,
+            });
+        }
     }
     if (showTreeText) {
         renderTreeLabels({
@@ -358,6 +492,7 @@ export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highRes
             collapsedSet,
         });
     }
+    renderCladeBrackets({ ctx, model, theme, offsetY, blockSizeYOverride });
     // Finish the index so it's ready for queries
     clickMap?.finish();
 }

package/dist/components/tree/renderTreeCanvas.js.map

@@ -1 +1 @@
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package/dist/components/tree/renderTreeOverview.d.ts

@@ -0,0 +1,52 @@
+import type { MsaViewModel } from '../../model.ts';
+import type { RasterCanvas } from '../msa/msaRaster.ts';
+import type { RenderCtx } from '../renderCtx.ts';
+import type { Theme } from '@mui/material';
+interface OverviewArgs {
+    model: MsaViewModel;
+    ctx: RenderCtx;
+    theme: Theme;
+    width: number;
+    height: number;
+}
+/**
+ * The whole tree at the size of the overview band, with the clade highlights
+ * under it.
+ *
+ * A branch that moves less than a pixel on both axes is dropped. The 230k-tip
+ * COVID tree has 460k of them over a 120px band, and the ones landing on the
+ * pixel their parent already covers cost a path segment each and change no
+ * pixel; the test in renderTreeOverview.test.ts measures a 200k-tip tree.
+ */
+export declare function drawTreeOverview({ model, ctx, theme, width, height, }: OverviewArgs): void;
+/**
+ * A box across the overview around a run of tip rows: the focused subtree's
+ * extent, or the one a hovered pixel would focus.
+ */
+export declare function drawTreeOverviewBox({ model, ctx, color, rows, width, height, }: Omit<OverviewArgs, 'theme'> & {
+    color: string;
+    rows: [number, number];
+}): void;
+/**
+ * The overview as the figure carries it: the tree, the clade highlights and
+ * the focus box. The SVG export draws it straight onto a svgcanvas Context,
+ * and the live canvas blits `treeOverviewImage` in place of the first two.
+ */
+export declare function renderTreeOverview(args: OverviewArgs): void;
+/**
+ * The tree and its clade highlights on an offscreen canvas, drawn once per
+ * change of anything they depend on and blitted every frame after that. A
+ * 230k-branch tree takes hundreds of milliseconds to walk and cannot be redrawn
+ * as the focus box follows the pointer.
+ *
+ * Returns undefined where a canvas has no 2d context (jsdom), and the caller
+ * then draws the tree itself.
+ */
+export declare function treeOverviewImage({ model, theme, width, height, scale, }: {
+    model: MsaViewModel;
+    theme: Theme;
+    width: number;
+    height: number;
+    scale: number;
+}): RasterCanvas | undefined;
+export {};

package/dist/components/tree/renderTreeOverview.js

@@ -0,0 +1,138 @@
+import { descendants } from '../../hierarchy.js';
+import { getNodeX } from './renderTreeCanvas.js';
+// the tree draws this far inside the band, so a box around the first or the
+// last row keeps both of its edges
+const pad = 1;
+function rowScale(numTips, height) {
+    const inner = height - pad * 2;
+    return (row) => pad + (row / numTips) * inner;
+}
+/**
+ * The whole tree at the size of the overview band, with the clade highlights
+ * under it.
+ *
+ * A branch that moves less than a pixel on both axes is dropped. The 230k-tip
+ * COVID tree has 460k of them over a 120px band, and the ones landing on the
+ * pixel their parent already covers cost a path segment each and change no
+ * pixel; the test in renderTreeOverview.test.ts measures a 200k-tip tree.
+ */
+export function drawTreeOverview({ model, ctx, theme, width, height, }) {
+    const layout = model.treeOverviewLayout;
+    if (!layout) {
+        return;
+    }
+    const { root, numTips, maxDepthToLeaf, showBranchLen } = layout;
+    const innerWidth = width - pad * 2;
+    const rowY = rowScale(numTips, height);
+    const nodeX = (node) => pad + (getNodeX(node, showBranchLen, 1, maxDepthToLeaf) ?? 0) * innerWidth;
+    for (const { rows, color } of model.treeOverviewClades) {
+        ctx.fillStyle = color;
+        ctx.fillRect(0, rowY(rows[0]), width, rowY(rows[1] + 1) - rowY(rows[0]));
+    }
+    ctx.strokeStyle = theme.palette.text.primary;
+    ctx.beginPath();
+    for (const source of descendants(root)) {
+        if (!source.children) {
+            continue;
+        }
+        const sx = nodeX(source);
+        const sy = rowY(source.x);
+        for (const target of source.children) {
+            const tx = nodeX(target);
+            const ty = rowY(target.x);
+            if (Math.abs(tx - sx) < 1 && Math.abs(ty - sy) < 1) {
+                continue;
+            }
+            ctx.moveTo(sx, sy);
+            ctx.lineTo(sx, ty);
+            ctx.lineTo(tx, ty);
+        }
+    }
+    ctx.stroke();
+}
+/**
+ * A box across the overview around a run of tip rows: the focused subtree's
+ * extent, or the one a hovered pixel would focus.
+ */
+export function drawTreeOverviewBox({ model, ctx, color, rows, width, height, }) {
+    const layout = model.treeOverviewLayout;
+    if (!layout) {
+        return;
+    }
+    const rowY = rowScale(layout.numTips, height);
+    const top = rowY(rows[0]);
+    ctx.strokeStyle = color;
+    ctx.strokeRect(0.5, top, width - 1, Math.max(2, rowY(rows[1] + 1) - top));
+}
+/**
+ * The overview as the figure carries it: the tree, the clade highlights and
+ * the focus box. The SVG export draws it straight onto a svgcanvas Context,
+ * and the live canvas blits `treeOverviewImage` in place of the first two.
+ */
+export function renderTreeOverview(args) {
+    drawTreeOverview(args);
+    const rows = args.model.treeOverviewFocusRows;
+    if (rows) {
+        drawTreeOverviewBox({
+            ...args,
+            rows,
+            color: args.theme.palette.text.primary,
+        });
+    }
+}
+const caches = new WeakMap();
+/**
+ * Everything the drawn tree depends on. `treeOverviewLayout` and
+ * `treeOverviewClades` are computed views, which recompute on every read
+ * outside a reaction, so the key holds the values behind them instead.
+ */
+function overviewKeys({ model, theme, width, height, scale, }) {
+    return [
+        model.data.tree,
+        model.data.msa,
+        model.currentAlignment,
+        model.collapsed.join(','),
+        JSON.stringify(model.clades),
+        model.showBranchLen,
+        width,
+        height,
+        scale,
+        theme.palette.text.primary,
+    ];
+}
+function makeCanvas(width, height) {
+    const canvas = typeof OffscreenCanvas !== 'undefined'
+        ? new OffscreenCanvas(width, height)
+        : typeof document !== 'undefined'
+            ? Object.assign(document.createElement('canvas'), { width, height })
+            : undefined;
+    const ctx = canvas?.getContext('2d');
+    return ctx && typeof ctx.stroke === 'function'
+        ? { canvas: canvas, ctx: ctx }
+        : undefined;
+}
+/**
+ * The tree and its clade highlights on an offscreen canvas, drawn once per
+ * change of anything they depend on and blitted every frame after that. A
+ * 230k-branch tree takes hundreds of milliseconds to walk and cannot be redrawn
+ * as the focus box follows the pointer.
+ *
+ * Returns undefined where a canvas has no 2d context (jsdom), and the caller
+ * then draws the tree itself.
+ */
+export function treeOverviewImage({ model, theme, width, height, scale, }) {
+    const keys = overviewKeys({ model, theme, width, height, scale });
+    const prev = caches.get(model);
+    if (prev && keys.every((key, i) => key === prev.keys[i])) {
+        return prev.canvas;
+    }
+    const made = makeCanvas(Math.max(1, Math.round(width * scale)), Math.max(1, Math.round(height * scale)));
+    if (made) {
+        made.ctx.scale(scale, scale);
+        drawTreeOverview({ model, ctx: made.ctx, theme, width, height });
+    }
+    const next = { keys, canvas: made?.canvas };
+    caches.set(model, next);
+    return next.canvas;
+}
+//# sourceMappingURL=renderTreeOverview.js.map

package/dist/components/tree/renderTreeOverview.js.map

@@ -0,0 +1 @@
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package/dist/components/tree/useTreeHover.js

@@ -1,4 +1,4 @@
-import { useRef, useState } from 'react';
+import { useState } from 'react';
 import { ClickMapIndex } from './clickMap.js';
 /**
  * Owns hit-testing for one tree block: the spatial index the render pass fills
@@ -7,9 +7,7 @@ import { ClickMapIndex } from './clickMap.js';
  * it lives in a ref; everything the component draws comes back as plain state.
  */
 export function useTreeHover({ model, offsetY, }) {
-    const clickMapRef = useRef(null);
-    clickMapRef.current ??= new ClickMapIndex();
-    const clickMap = clickMapRef.current;
+    const [clickMap] = useState(() => new ClickMapIndex());
     const [hovered, setHovered] = useState();
     // leaf labels win over the branch/bubble targets they overlap, so a click on a
     // name opens the node menu rather than the branch menu

package/dist/components/tree/useTreeHover.js.map

@@ -1 +1 @@
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+{"version":3,"file":"useTreeHover.js","sourceRoot":"","sources":["../../../src/components/tree/useTreeHover.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAW7C;;;;;GAKG;AACH,MAAM,UAAU,YAAY,CAAC,EAC3B,KAAK,EACL,OAAO,GAIR;IACC,MAAM,CAAC,QAAQ,CAAC,GAAG,QAAQ,CAAC,GAAG,EAAE,CAAC,IAAI,aAAa,EAAE,CAAC,CAAA;IACtD,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAmB,CAAA;IAEzD,+EAA+E;IAC/E,uDAAuD;IACvD,SAAS,OAAO,CAAC,KAAuB;QACtC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,GAAG,OAAO,CAAA;QAC7C,MAAM,OAAO,GAAG,QAAQ,CAAC,MAAM,CAAC;YAC9B,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;YACX,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;SACZ,CAAC,CAAA;QACF,OAAO,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,OAAO,CAAC,CAAC,CAAC,CAAA;IAC3D,CAAC;IAED,SAAS,WAAW,CAAC,KAAuB;QAC1C,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,CAAA;QAC5B,UAAU,CACR,KAAK;YACH,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE;YAC9D,CAAC,CAAC,SAAS,CACd,CAAA;QACD,2EAA2E;QAC3E,qDAAqD;QACrD,KAAK,CAAC,kBAAkB,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QACnC,KAAK,CAAC,WAAW,CACf,SAAS,EACT,KAAK,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CACvE,CAAA;IACH,CAAC;IAED,SAAS,YAAY;QACnB,UAAU,CAAC,SAAS,CAAC,CAAA;QACrB,KAAK,CAAC,kBAAkB,CAAC,SAAS,CAAC,CAAA;QACnC,KAAK,CAAC,WAAW,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;IACzC,CAAC;IAED,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,CAAA;AAClE,CAAC"}

package/dist/constants.d.ts

@@ -10,12 +10,17 @@ export declare const defaultHideGaps = true;
 export declare const defaultAllowedGappyness = 100;
 export declare const defaultSubFeatureRows = false;
 export declare const subFeatureRowHeight = 4;
+export declare const domainUnderlineHeight = 3;
 export declare const segmentFeatureTypes: Set<string>;
 export declare const segmentShades: string[];
 export declare const defaultDrawMsaLetters = true;
 export declare const defaultScrollZoom = false;
+export declare const scrollZoomAxes: readonly ['both', 'horizontal', 'vertical'];
+export type ScrollZoomAxis = (typeof scrollZoomAxes)[number];
+export declare const defaultScrollZoomAxis: ScrollZoomAxis;
 export declare const minLetterRowHeight = 8;
 export declare const minLetterColWidth = 5;
+export declare const minFeatureLabelHeight = 9;
 export declare const labelReferenceFontSize = 16;
 export declare const minColWidth = 0.2;
 export declare const minRowHeight = 1;
@@ -30,5 +35,16 @@ export declare const defaultTreeWidth = 300;
 export declare const defaultShowBranchLen = true;
 export declare const defaultDrawTree = true;
 export declare const defaultDrawNodeBubbles = true;
+export declare const defaultDrawNodeLabels = false;
+export declare const defaultShowTreeOverview = false;
+export declare const defaultOverviewHeight = 120;
 export declare const maxNeighborJoiningRows = 500;
+export declare const rowTintAlpha = 0.25;
+export declare const cladeHighlightColor = "#fff3c4";
+export declare const cladeHighlightAlpha = 0.6;
 export declare const maxInlineSnapshotBytes = 50000;
+export declare const rowPanelHeaderHeight = 56;
+export declare const treeScaleBarHeight = 22;
+export declare const defaultFeaturePanelWidth = 200;
+export declare const msaOverlayZIndex = 1000;
+export declare const legendZIndex: number;