react-msaview 5.1.1 → 5.2.1

package/dist/components/tracks/renderTracksSvg.js

@@ -1,6 +1,11 @@
+import { setFontSize } from "../../setFontSize.js";
+import { visibleColRange } from "../msa/visibleColRange.js";
 export function drawConservationBars({ ctx, conservation, colWidth, trackHeight, offsetX, blockSize, }) {
-    const xStart = Math.max(0, Math.floor(offsetX / colWidth));
-    const xEnd = Math.max(0, Math.ceil((offsetX + blockSize) / colWidth));
+    const { xStart, xEnd } = visibleColRange({
+        offsetX,
+        blockWidth: blockSize,
+        colWidth,
+    });
     ctx.fillStyle = 'gray';
     for (let i = xStart; i < xEnd && i < conservation.length; i++) {
         const value = conservation[i];
@@ -10,8 +15,11 @@ export function drawConservationBars({ ctx, conservation, colWidth, trackHeight,
     }
 }
 export function drawTextTrackContent({ ctx, data, colorScheme, contrastScheme, bgColor, colWidth, rowHeight, offsetX, blockSize, }) {
-    const xStart = Math.max(0, Math.floor(offsetX / colWidth));
-    const xEnd = Math.max(0, Math.ceil((offsetX + blockSize) / colWidth));
+    const { xStart, xEnd } = visibleColRange({
+        offsetX,
+        blockWidth: blockSize,
+        colWidth,
+    });
     const str = data?.slice(xStart, xEnd);
     for (let i = 0; str && i < str.length; i++) {
         const letter = str[i];
@@ -54,7 +62,7 @@ export function renderTextTrack({ model, ctx, track, offsetX, offsetY, contrastS
     ctx.scale(k, k);
     ctx.translate(-offsetX, offsetY);
     ctx.textAlign = 'center';
-    ctx.font = ctx.font.replace(/\d+px/, `${fontSize}px`);
+    setFontSize(ctx, fontSize);
     drawTextTrackContent({
         ctx,
         data,

package/dist/components/tracks/renderTracksSvg.js.map

@@ -1 +1 @@
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+{"version":3,"file":"renderTracksSvg.js","sourceRoot":"","sources":["../../../src/components/tracks/renderTracksSvg.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAM3D,MAAM,UAAU,oBAAoB,CAAC,EACnC,GAAG,EACH,YAAY,EACZ,QAAQ,EACR,WAAW,EACX,OAAO,EACP,SAAS,GAQV;IACC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IAEF,GAAG,CAAC,SAAS,GAAG,MAAM,CAAA;IACtB,KAAK,IAAI,CAAC,GAAG,MAAM,EAAE,CAAC,GAAG,IAAI,IAAI,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QAC9D,MAAM,KAAK,GAAG,YAAY,CAAC,CAAC,CAAE,CAAA;QAC9B,MAAM,SAAS,GAAG,KAAK,GAAG,WAAW,CAAA;QACrC,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAA;QACtB,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,WAAW,GAAG,SAAS,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;IAC/D,CAAC;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,EACnC,GAAG,EACH,IAAI,EACJ,WAAW,EACX,cAAc,EACd,OAAO,EACP,QAAQ,EACR,SAAS,EACT,OAAO,EACP,SAAS,GAWV;IACC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IACF,MAAM,GAAG,GAAG,IAAI,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAErC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,IAAI,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3C,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAE,CAAA;QACtB,MAAM,KAAK,GAAG,WAAW,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAA;QAC/C,IAAI,OAAO,EAAE,CAAC;YACZ,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,GAAG,OAAO,GAAG,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAA;YACvD,GAAG,CAAC,SAAS,GAAG,KAAK,IAAI,OAAO,CAAA;YAChC,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;YACvC,IAAI,SAAS,IAAI,EAAE,IAAI,QAAQ,IAAI,SAAS,GAAG,CAAC,EAAE,CAAC;gBACjD,GAAG,CAAC,SAAS,GAAG,cAAc,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,IAAI,OAAO,CAAA;gBAC/D,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,QAAQ,GAAG,CAAC,EAAE,SAAS,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;YAC3D,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,EACtC,KAAK,EACL,GAAG,EACH,OAAO,EACP,OAAO,EACP,WAAW,EACX,kBAAkB,EAClB,0BAA0B,GAS3B;IACC,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IACvE,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAE1D,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;IAEhC,oBAAoB,CAAC;QACnB,GAAG;QACH,YAAY;QACZ,QAAQ;QACR,WAAW;QACX,OAAO;QACP,SAAS,EAAE,EAAE;KACd,CAAC,CAAA;IAEF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAC9B,KAAK,EACL,GAAG,EACH,KAAK,EACL,OAAO,EACP,OAAO,EACP,cAAc,EACd,kBAAkB,EAClB,0BAA0B,GAU3B;IACC,MAAM,EACJ,SAAS,EACT,OAAO,EACP,WAAW,EAAE,gBAAgB,EAC7B,QAAQ,EACR,QAAQ,EACR,SAAS,EACT,kBAAkB,GACnB,GAAG,KAAK,CAAA;IAET,MAAM,EAAE,iBAAiB,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAC/C,MAAM,WAAW,GAAG,iBAAiB,IAAI,gBAAgB,CAAA;IACzD,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAE1D,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;IAChC,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;IACxB,WAAW,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAA;IAE1B,oBAAoB,CAAC;QACnB,GAAG;QACH,IAAI;QACJ,WAAW;QACX,cAAc;QACd,OAAO;QACP,QAAQ;QACR,SAAS;QACT,OAAO;QACP,SAAS,EAAE,EAAE;KACd,CAAC,CAAA;IAEF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAC9B,KAAK,EACL,GAAG,EACH,OAAO,EACP,cAAc,EACd,kBAAkB,EAClB,0BAA0B,GAQ3B;IACC,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,IAAI,QAAQ,GAAG,CAAC,CAAA;IAEhB,KAAK,MAAM,KAAK,IAAI,cAAc,EAAE,CAAC;QACnC,MAAM,WAAW,GAAG,KAAK,CAAC,KAAK,CAAC,MAAM,CAAA;QAEtC,IAAI,KAAK,CAAC,KAAK,CAAC,EAAE,KAAK,cAAc,EAAE,CAAC;YACtC,uBAAuB,CAAC;gBACtB,KAAK;gBACL,GAAG;gBACH,OAAO;gBACP,OAAO,EAAE,QAAQ;gBACjB,WAAW;gBACX,kBAAkB;gBAClB,0BAA0B;aAC3B,CAAC,CAAA;QACJ,CAAC;aAAM,CAAC;YACN,eAAe,CAAC;gBACd,KAAK;gBACL,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,OAAO,EAAE,QAAQ;gBACjB,cAAc;gBACd,kBAAkB;gBAClB,0BAA0B;aAC3B,CAAC,CAAA;QACJ,CAAC;QAED,QAAQ,IAAI,WAAW,CAAA;IACzB,CAAC;AACH,CAAC"}

package/dist/components/tree/TreeCanvas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TreeCanvas.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAE7D,OAAO,EAAE,OAAO,EAAE,MAAM,0BAA0B,CAAA;AAClD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAA;AAC/C,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AAIxD,MAAM,cAAc,GAAG,qBAAqB,CAAA;AAC5C,MAAM,cAAc,GAAG,qBAAqB,CAAA;AAE5C,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,YAAY,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IACpD,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC3D,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,CAAA;IAErE,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,YAAY,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QAClD,OAAO,GAAG;YACR,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;oBACnB,MAAM,EACJ,UAAU,EACV,MAAM,EACN,SAAS,EACT,eAAe,EACf,aAAa,EAAE,CAAC,EAChB,MAAM,EAAE,CAAC,EACT,OAAO,EAAE,EAAE,EACX,gBAAgB,GACjB,GAAG,KAAK,CAAA;oBACT,GAAG,CAAC,cAAc,EAAE,CAAA;oBACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;oBAEzB,MAAM,UAAU,GAAG,IAAI,GAAG,CACxB,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAC3C,CAAA;oBACD,MAAM,OAAO,GAAG,CAAC,IAAY,EAAE,EAAE;wBAC/B,MAAM,IAAI,GAAG,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;wBACjC,IAAI,IAAI,EAAE,CAAC;4BACT,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,IAAI,CAAC,CAAE,GAAG,EAAE,GAAG,SAAS,GAAG,CAAC,EAAE,CAAC,EAAE,SAAS,CAAC,CAAA;wBAC7D,CAAC;oBACH,CAAC,CAAA;oBAED,IAAI,UAAU,EAAE,CAAC;wBACf,GAAG,CAAC,SAAS,GAAG,cAAc,CAAA;wBAC9B,OAAO,CAAC,UAAU,CAAC,CAAA;oBACrB,CAAC;oBAED,IAAI,eAAe,EAAE,CAAC;wBACpB,GAAG,CAAC,SAAS,GAAG,cAAc,CAAA;wBAC9B,KAAK,MAAM,cAAc,IAAI,eAAe,CAAC,eAAe,EAAE,CAAC;4BAC7D,OAAO,CAAC,cAAc,CAAC,CAAA;wBACzB,CAAC;oBACH,CAAC;oBAED,IACE,gBAAgB;wBAChB,gBAAgB,KAAK,UAAU;wBAC/B,CAAC,eAAe,EAAE,eAAe,CAAC,QAAQ,CAAC,gBAAgB,CAAC,EAC5D,CAAC;wBACD,GAAG,CAAC,SAAS,GAAG,cAAc,CAAA;wBAC9B,OAAO,CAAC,gBAAgB,CAAC,CAAA;oBAC3B,CAAC;gBACH,CAAC;YACH,CAAC,CAAC;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,SAAS,EACpB,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,MAAM;YACN,QAAQ,EAAE,UAAU;YACpB,KAAK,EAAE,SAAS,GAAG,OAAO;SAC3B;QAEA,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACpB,oBAAC,eAAe,IAAC,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,GAAI,CAC9D,CAAC;QACF,gCACE,GAAG,EAAE,YAAY,EACjB,KAAK,EAAE,aAAa,EACpB,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,KAAK,EAAE,aAAa;gBACpB,MAAM;gBACN,MAAM,EAAE,IAAI;gBACZ,aAAa,EAAE,MAAM;aACtB,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/components/tree/TreeCanvasBlock.js

@@ -1,4 +1,4 @@
-import React, { useCallback, useEffect, useRef, useState } from 'react';
+import React, { useEffect, useRef, useState } from 'react';
 import { useTheme } from '@mui/material';
 import Flatbush from 'flatbush';
 import { autorun } from 'mobx';
@@ -36,7 +36,6 @@ class ClickMapIndex {
     finish() {
         if (this.entries.length === 0) {
             this.flatbush = null;
-            return;
         }
         else {
             this.flatbush = new Flatbush(this.entries.length);
@@ -67,13 +66,6 @@ const TreeCanvasBlock = observer(function ({ model, offsetY, }) {
     const height = blockSize;
     const w2 = width * highResScaleFactor;
     const h2 = height * highResScaleFactor;
-    // biome-ignore lint/correctness/useExhaustiveDependencies:
-    const vref = useCallback((arg) => {
-        model.incrementRef();
-        ref.current = arg;
-    }, 
-    // eslint-disable-next-line react-hooks/exhaustive-deps
-    [model, height, width]);
     useEffect(() => {
         const ctx = ref.current?.getContext('2d');
         if (!ctx) {
@@ -198,7 +190,7 @@ const TreeCanvasBlock = observer(function ({ model, offsetY, }) {
                 // Clear all highlighting when leaving tree area
                 model.setHoveredTreeNode(undefined);
                 model.setMousePos(undefined, undefined);
-            }, ref: vref }),
+            }, ref: ref }),
         React.createElement("canvas", { style: {
                 ...style,
                 pointerEvents: 'none',

package/dist/components/tree/TreeCanvasBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TreeCanvasBlock.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE1D,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,QAAQ,MAAM,UAAU,CAAA;AAC/B,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AAIjE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,QAAQ,EAAE,OAAO;QACjB,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,KAAK;QACb,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;QACxC,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;QACjC,OAAO,EAAE,SAAS;QAClB,YAAY,EAAE,CAAC;QACf,QAAQ,EAAE,EAAE;QACZ,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,GAAG;QACb,QAAQ,EAAE,QAAQ;QAClB,YAAY,EAAE,UAAU;KACzB;CACF,CAAC,CAAC,CAAA;AAmBH,MAAM,aAAa;IACT,QAAQ,GAAoB,IAAI,CAAA;IAChC,OAAO,GAAiB,EAAE,CAAA;IAElC,KAAK;QACH,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,EAAE,CAAA;IACnB,CAAC;IAED,MAAM,CAAC,KAAiB;QACtB,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC1B,CAAC;IAED,MAAM;QACJ,IAAI,IAAI,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC9B,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAA;QACtB,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,QAAQ,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;YACjD,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;gBACjC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,CAAA;YACnE,CAAC;YACD,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAA;QACxB,CAAC;IACH,CAAC;IAED,MAAM,CAAC,GAKN;QACC,OAAO,CACL,IAAI,CAAC,QAAQ;YACX,EAAE,MAAM,CAAC,GAAG,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,CAAC;aAC/C,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAE,CAAC,IAAI,EAAE,CACpC,CAAA;IACH,CAAC;CACF;AAED,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,MAAM,QAAQ,GAAG,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC,CAAA;IAC5C,MAAM,YAAY,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IACpD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,EAAe,CAAA;IAC3D,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,EAAe,CAAA;IACnE,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAc,CAAA;IACtD,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,EAI1C,CAAA;IAEJ,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IAEvE,MAAM,KAAK,GAAG,aAAa,GAAG,OAAO,CAAA;IACrC,MAAM,MAAM,GAAG,SAAS,CAAA;IACxB,MAAM,EAAE,GAAG,KAAK,GAAG,kBAAkB,CAAA;IACrC,MAAM,EAAE,GAAG,MAAM,GAAG,kBAAkB,CAAA;IAEtC,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QACzC,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,OAAO,OAAO,CAAC,GAAG,EAAE;YAClB,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CACX,CAAC,EACD,CAAC,EACD,CAAC,aAAa,GAAG,OAAO,CAAC,GAAG,kBAAkB,EAC9C,SAAS,GAAG,kBAAkB,CAC/B,CAAA;YACD,gBAAgB,CAAC;gBACf,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,QAAQ,EAAE,QAAQ,CAAC,OAAO;gBAC1B,KAAK;aACN,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC,EAAE,CAAC,KAAK,EAAE,SAAS,EAAE,kBAAkB,EAAE,aAAa,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC,CAAA;IAEzE,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,YAAY,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QAClD,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,aAAa,GAAG,OAAO,EAAE,SAAS,CAAC,CAAA;QACvD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,CAAA;QAE1B,gDAAgD;QAChD,IAAI,QAAQ,EAAE,CAAC;YACb,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,QAAQ,CAAA;YAE3C,GAAG,CAAC,SAAS,GAAG,iBAAiB,CAAA;YACjC,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,GAAG,IAAI,EAAE,IAAI,GAAG,IAAI,CAAC,CAAA;QACpD,CAAC;IACH,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,EAAE,SAAS,EAAE,aAAa,CAAC,CAAC,CAAA;IAEjD,SAAS,mBAAmB,CAAC,KAAuB;QAClD,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QAEnC,MAAM,CAAC,KAAK,CAAC,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC;YACtC,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;YACX,IAAI,EAAE,CAAC,GAAG,OAAO;YACjB,IAAI,EAAE,CAAC,GAAG,CAAC,GAAG,OAAO;SACtB,CAAC,CAAA;QAEF,OAAO,KAAK,EAAE,MAAM;YAClB,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE;YAClD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,SAAS,iBAAiB,CAAC,KAAuB;QAChD,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,KAAK,CAAC,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC;YACtC,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;YACX,IAAI,EAAE,CAAC,GAAG,OAAO;YACjB,IAAI,EAAE,CAAC,GAAG,CAAC,GAAG,OAAO;SACtB,CAAC,CAAA;QAEF,OAAO,KAAK,IAAI,CAAC,KAAK,CAAC,MAAM;YAC3B,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE;YAClD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IACD,MAAM,KAAK,GAAG;QACZ,KAAK;QACL,MAAM;QACN,GAAG,EAAE,OAAO,GAAG,OAAO;QACtB,IAAI,EAAE,CAAC;QACP,QAAQ,EAAE,UAAU;KACZ,CAAA;IACV,OAAO,CACL;QACG,UAAU,EAAE,EAAE,CAAC,CAAC,CAAC,CAChB,oBAAC,cAAc,IACb,IAAI,EAAE,UAA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package/dist/components/tree/renderTreeCanvas.d.ts

@@ -1,4 +1,5 @@
 import type { MsaViewModel } from '../../model.ts';
+import type { RenderCtx } from '../renderCtx.ts';
 import type { Theme } from '@mui/material';
 export declare const padding = 600;
 interface ClickEntry {
@@ -23,7 +24,7 @@ interface ClickMapIndex {
 }
 export declare function renderTree({ offsetY, ctx, model, theme, maxBranchLen, maxDepthToLeaf, blockSizeYOverride, }: {
     offsetY: number;
-    ctx: CanvasRenderingContext2D;
+    ctx: RenderCtx;
     model: MsaViewModel;
     theme: Theme;
     maxBranchLen: number;
@@ -31,7 +32,7 @@ export declare function renderTree({ offsetY, ctx, model, theme, maxBranchLen, m
     blockSizeYOverride?: number;
 }): void;
 export declare function renderNodeBubbles({ ctx, clickMap, offsetY, model, maxBranchLen, maxDepthToLeaf, blockSizeYOverride, }: {
-    ctx: CanvasRenderingContext2D;
+    ctx: RenderCtx;
     clickMap?: ClickMapIndex;
     offsetY: number;
     model: MsaViewModel;
@@ -42,7 +43,7 @@ export declare function renderNodeBubbles({ ctx, clickMap, offsetY, model, maxBr
 export declare function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, maxBranchLen, maxDepthToLeaf, blockSizeYOverride, }: {
     model: MsaViewModel;
     offsetY: number;
-    ctx: CanvasRenderingContext2D;
+    ctx: RenderCtx;
     clickMap?: ClickMapIndex;
     theme: Theme;
     maxBranchLen: number;
@@ -52,7 +53,7 @@ export declare function renderTreeLabels({ theme, model, offsetY, ctx, clickMap,
 export declare function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highResScaleFactorOverride, blockSizeYOverride, }: {
     model: MsaViewModel;
     offsetY: number;
-    ctx: CanvasRenderingContext2D;
+    ctx: RenderCtx;
     clickMap?: ClickMapIndex;
     theme: Theme;
     highResScaleFactorOverride?: number;

package/dist/components/tree/renderTreeCanvas.js

@@ -1,4 +1,5 @@
-import { calcDepthToLeaf, descendants, links } from "../../hierarchy.js";
+import { calcDepthToLeaf, forEachDescendant, forEachLink, } from "../../hierarchy.js";
+import { setFontSize } from "../../setFontSize.js";
 export const padding = 600;
 const extendBounds = 5;
 const radius = 2.5;
@@ -16,16 +17,15 @@ function getNodeX(node, showBranchLen, maxBranchLen, maxDepthToLeaf) {
 }
 export function renderTree({ offsetY, ctx, model, theme, maxBranchLen, maxDepthToLeaf, blockSizeYOverride, }) {
     const { hierarchy, showBranchLenEffective: showBranchLen, blockSize } = model;
-    const by = blockSizeYOverride || blockSize;
+    const by = blockSizeYOverride ?? blockSize;
     ctx.strokeStyle = theme.palette.text.primary;
-    for (const link of links(hierarchy)) {
-        const { source, target } = link;
+    forEachLink(hierarchy, (source, target) => {
         const sy = source.x;
         const ty = target.x;
         const tx = getNodeX(target, showBranchLen, maxBranchLen, maxDepthToLeaf);
         const sx = getNodeX(source, showBranchLen, maxBranchLen, maxDepthToLeaf);
         if (tx === undefined || sx === undefined) {
-            continue;
+            return;
         }
         const y1 = Math.min(sy, ty);
         const y2 = Math.max(sy, ty);
@@ -39,15 +39,15 @@ export function renderTree({ offsetY, ctx, model, theme, maxBranchLen, maxDepthT
             ctx.lineTo(tx, ty);
             ctx.stroke();
         }
-    }
+    });
 }
 export function renderNodeBubbles({ ctx, clickMap, offsetY, model, maxBranchLen, maxDepthToLeaf, blockSizeYOverride, }) {
     const { hierarchy, showBranchLenEffective: showBranchLen, collapsed, blockSize, marginLeft: ml, } = model;
-    const by = blockSizeYOverride || blockSize;
-    for (const node of descendants(hierarchy)) {
+    const by = blockSizeYOverride ?? blockSize;
+    forEachDescendant(hierarchy, node => {
         const x = getNodeX(node, showBranchLen, maxBranchLen, maxDepthToLeaf);
         if (x === undefined) {
-            continue;
+            return;
         }
         const { data } = node;
         const y = node.x;
@@ -71,11 +71,11 @@ export function renderNodeBubbles({ ctx, clickMap, offsetY, model, maxBranchLen,
                 name,
             });
         }
-    }
+    });
 }
 export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, maxBranchLen, maxDepthToLeaf, blockSizeYOverride, }) {
-    const { fontSize, showBranchLenEffective: showBranchLen, treeMetadata, blockSize, labelsAlignRight, drawTree, treeAreaWidth, treeAreaWidthMinusMargin, marginLeft, leaves, noTree, } = model;
-    const by = blockSizeYOverride || blockSize;
+    const { fontSize, showBranchLenEffective: showBranchLen, treeMetadata, blockSize, labelsAlignRight, drawTree, treeAreaWidth, treeAreaWidthMinusMargin, marginLeft, leaves, noTree, labelWidthMap, } = model;
+    const by = blockSizeYOverride ?? blockSize;
     const emHeight = ctx.measureText('M').width;
     if (labelsAlignRight) {
         ctx.textAlign = 'right';
@@ -93,9 +93,9 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, maxBran
             const yp = y + fontSize / 4;
             let xp = 0;
             if (!noTree) {
-                xp = getNodeX(node, showBranchLen, maxBranchLen, maxDepthToLeaf) || 0;
+                xp = getNodeX(node, showBranchLen, maxBranchLen, maxDepthToLeaf) ?? 0;
             }
-            const { width } = ctx.measureText(displayName);
+            const width = labelWidthMap.get(name) ?? ctx.measureText(displayName).width;
             ctx.fillStyle = theme.palette.text.primary;
             if (labelsAlignRight) {
                 const smallPadding = 2;
@@ -134,23 +134,15 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, maxBran
 export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highResScaleFactorOverride, blockSizeYOverride, }) {
     clickMap?.clear();
     // Defer the finish call until after all inserts are done
-    const { noTree, drawTree, drawNodeBubbles, highResScaleFactor, fontSize, showTreeText, marginLeft, nref, 
+    const { noTree, drawTree, drawNodeBubbles, highResScaleFactor, fontSize, showTreeText, marginLeft, 
     // eslint-disable-next-line  @typescript-eslint/no-unused-vars
-    rowHeight: _rowHeight, // this is needed for redrawing after zoom change
+    rowHeight: _rowHeight, // read so the draw autorun re-fires after a zoom change
      } = model;
     ctx.resetTransform();
-    // this is a bogus use of nref, it is never less than 0. we just are using
-    // it in this statement because otherwise it would be an unused variable,
-    // we just need to use nref to indicate a redraw in an autorun when canvas
-    // ref is updated and in order to convince bundlers like not to delete
-    // unused usage with propertyReadSideEffects
-    const k = nref < 0
-        ? Number.NEGATIVE_INFINITY
-        : highResScaleFactorOverride || highResScaleFactor;
+    const k = highResScaleFactorOverride ?? highResScaleFactor;
     ctx.scale(k, k);
     ctx.translate(marginLeft, -offsetY);
-    const font = ctx.font;
-    ctx.font = font.replace(/\d+px/, `${fontSize}px`);
+    setFontSize(ctx, fontSize);
     // memoized on the model and shared across the tree/bubble/label passes (and
     // across all tree blocks) rather than re-traversing the hierarchy in each
     const { maxBranchLength: maxBranchLen, maxDepthToLeaf } = model;

package/dist/components/tree/renderTreeCanvas.js.map

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package/dist/components/util.d.ts

@@ -1,15 +1 @@
-/**
- * Given a scale ( bp/px ) and minimum distances (px) between major and minor
- * gridlines, return an object like `{ majorPitch: bp, minorPitch: bp }` giving
- * the gridline pitches to use.
- */
-export declare function chooseGridPitch(scale: number, minMajorPitchPx: number, minMinorPitchPx: number): {
-    majorPitch: number;
-    minorPitch: number;
-};
-export declare function makeTicks(start: number, end: number, bpPerPx: number, emitMajor?: boolean, emitMinor?: boolean): {
-    type: string;
-    base: number;
-    index: number;
-}[];
 export declare function mathPower(num: number): string;

package/dist/components/util.js

@@ -1,61 +1,3 @@
-/**
- * Given a scale ( bp/px ) and minimum distances (px) between major and minor
- * gridlines, return an object like `{ majorPitch: bp, minorPitch: bp }` giving
- * the gridline pitches to use.
- */
-export function chooseGridPitch(scale, minMajorPitchPx, minMinorPitchPx) {
-    scale = Math.abs(scale);
-    const minMajorPitchBp = minMajorPitchPx * scale;
-    const majorMagnitude = Number.parseInt(minMajorPitchBp.toExponential().split(/e/i)[1], 10);
-    let majorPitch = 10 ** majorMagnitude;
-    while (majorPitch < minMajorPitchBp) {
-        majorPitch *= 2;
-        if (majorPitch >= minMajorPitchBp) {
-            break;
-        }
-        majorPitch *= 2.5;
-    }
-    majorPitch = Math.max(majorPitch, 5);
-    const majorPitchPx = majorPitch / scale;
-    let minorPitch = 0;
-    if (!(majorPitch % 10) && majorPitchPx / 10 >= minMinorPitchPx) {
-        minorPitch = majorPitch / 10;
-    }
-    else if (!(majorPitch % 5) && majorPitchPx / 5 >= minMinorPitchPx) {
-        minorPitch = majorPitch / 5;
-    }
-    else if (!(majorPitch % 2) && majorPitchPx / 2 >= minMinorPitchPx) {
-        minorPitch = majorPitch / 2;
-    }
-    return { majorPitch, minorPitch };
-}
-export function makeTicks(start, end, bpPerPx, emitMajor = true, emitMinor = true) {
-    const gridPitch = chooseGridPitch(bpPerPx, 60, 15);
-    let minBase = start;
-    let maxBase = end;
-    if (bpPerPx < 0) {
-        ;
-        [minBase, maxBase] = [maxBase, minBase];
-    }
-    // add 20px additional on the right and left to allow us to draw the ends of
-    // labels that lie a little outside our region
-    minBase -= Math.abs(20 * bpPerPx);
-    maxBase += Math.abs(20 * bpPerPx) + 1;
-    const iterPitch = gridPitch.minorPitch || gridPitch.majorPitch;
-    let index = 0;
-    const ticks = [];
-    for (let base = Math.ceil(minBase / iterPitch) * iterPitch; base < maxBase; base += iterPitch) {
-        if (emitMinor && base % (gridPitch.majorPitch * 2)) {
-            ticks.push({ type: 'minor', base: base - 1, index });
-            index += 1;
-        }
-        else if (emitMajor && !(base % (gridPitch.majorPitch * 2))) {
-            ticks.push({ type: 'major', base: base - 1, index });
-            index += 1;
-        }
-    }
-    return ticks;
-}
 export function mathPower(num) {
     if (num < 999) {
         return String(num);

package/dist/components/util.js.map

@@ -1 +1 @@
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package/dist/constants.d.ts

@@ -9,6 +9,10 @@ export declare const defaultHideGaps = true;
 export declare const defaultAllowedGappyness = 100;
 export declare const defaultSubFeatureRows = false;
 export declare const defaultDrawMsaLetters = true;
+export declare const defaultScrollZoom = false;
+export declare const minColWidth = 0.2;
+export declare const minRowHeight = 1;
+export declare const maxCellSize = 80;
 export declare const defaultBgColor = true;
 export declare const defaultColorSchemeName = "maeditor";
 export declare const defaultDrawLabels = true;

package/dist/constants.js

@@ -10,6 +10,13 @@ export const defaultHideGaps = true;
 export const defaultAllowedGappyness = 100;
 export const defaultSubFeatureRows = false;
 export const defaultDrawMsaLetters = true;
+export const defaultScrollZoom = false;
+// Zoom limits, px per cell. maxCellSize caps both smooth zoom and the stepwise
+// zoom-in buttons (which otherwise grow unbounded). minColWidth/minRowHeight are
+// the smooth-zoom floors.
+export const minColWidth = 0.2;
+export const minRowHeight = 1;
+export const maxCellSize = 80;
 // MSA model defaults
 export const defaultBgColor = true;
 export const defaultColorSchemeName = 'maeditor';

package/dist/constants.js.map

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package/dist/flatToTree.js

@@ -19,6 +19,12 @@ export function flatToTree(items) {
             root ??= node;
         }
     }
+    if (root === undefined) {
+        // no node lacks a (resolvable) parent: empty input, or every node's parent
+        // points back into the set (a cycle). returning undefined here would crash
+        // cryptically downstream, so fail with a diagnosable message instead
+        throw new Error('could not build tree from flat node list: no root found (input was empty or contains a parent cycle)');
+    }
     return root;
 }
 //# sourceMappingURL=flatToTree.js.map

package/dist/flatToTree.js.map

@@ -1 +1 @@
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+{"version":3,"file":"flatToTree.js","sourceRoot":"","sources":["../src/flatToTree.ts"],"names":[],"mappings":"AAYA,MAAM,UAAU,UAAU,CAAC,KAAiB;IAC1C,MAAM,OAAO,GAAG,IAAI,GAAG,CACrB,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;QAChB,IAAI,CAAC,EAAE;QACP;YACE,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE;YAChB,IAAI,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE;YAClB,MAAM,EAAE,IAAI,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,SAAS;YAChE,QAAQ,EAAE,EAAgB;SAC3B;KACF,CAAC,CACH,CAAA;IAED,IAAI,IAA0B,CAAA;IAC9B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAE,CAAA;QAClC,MAAM,MAAM,GACV,IAAI,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;QAClE,IAAI,MAAM,EAAE,CAAC;YACX,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAC5B,CAAC;aAAM,CAAC;YACN,IAAI,KAAK,IAAI,CAAA;QACf,CAAC;IACH,CAAC;IAED,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;QACvB,2EAA2E;QAC3E,2EAA2E;QAC3E,qEAAqE;QACrE,MAAM,IAAI,KAAK,CACb,sGAAsG,CACvG,CAAA;IACH,CAAC;IAED,OAAO,IAAI,CAAA;AACb,CAAC"}

package/dist/hierarchy.d.ts

@@ -16,13 +16,15 @@ export interface HierarchyLink<T = NodeWithIds> {
     source: HierarchyNode<T>;
     target: HierarchyNode<T>;
 }
+export declare function descendants<T>(node: HierarchyNode<T>): HierarchyNode<T>[];
 export declare function hierarchy<T>(data: T, childrenAccessor: (d: T) => T[] | undefined): HierarchyNode<T>;
 export declare function sum<T>(node: HierarchyNode<T>, valueFn: (d: T) => number): HierarchyNode<T>;
 export declare function sort<T>(node: HierarchyNode<T>, compareFn: (a: HierarchyNode<T>, b: HierarchyNode<T>) => number): HierarchyNode<T>;
 export declare function find<T>(node: HierarchyNode<T>, predicate: (n: HierarchyNode<T>) => boolean): HierarchyNode<T> | undefined;
 export declare function leaves<T>(node: HierarchyNode<T>): HierarchyNode<T>[];
-export declare function descendants<T>(node: HierarchyNode<T>): HierarchyNode<T>[];
 export declare function links<T>(node: HierarchyNode<T>): HierarchyLink<T>[];
+export declare function forEachLink<T>(node: HierarchyNode<T>, cb: (source: HierarchyNode<T>, target: HierarchyNode<T>) => void): void;
+export declare function forEachDescendant<T>(node: HierarchyNode<T>, cb: (n: HierarchyNode<T>) => void): void;
 export declare function clusterLayout<T>(root: HierarchyNode<T>, sizeX: number, sizeY: number): void;
 export declare function collapse<T>(node: HierarchyNode<T>): void;
 export declare function calcDepthToLeaf(node: HierarchyNode): number;