react-msaview 5.1.1 → 5.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +41 -8
- package/bundle/index.js +17 -17
- package/bundle/index.js.LICENSE.txt +1 -1
- package/bundle/index.js.map +1 -1
- package/dist/calculateBlocks.d.ts +4 -10
- package/dist/calculateBlocks.js +12 -20
- package/dist/calculateBlocks.js.map +1 -1
- package/dist/components/ConservationTrack.js +20 -37
- package/dist/components/ConservationTrack.js.map +1 -1
- package/dist/components/MSAView.js +8 -1
- package/dist/components/MSAView.js.map +1 -1
- package/dist/components/ResizeHandles.d.ts +3 -0
- package/dist/components/ResizeHandles.js +60 -105
- package/dist/components/ResizeHandles.js.map +1 -1
- package/dist/components/TextTrack.js +25 -34
- package/dist/components/TextTrack.js.map +1 -1
- package/dist/components/Track.js +1 -1
- package/dist/components/Track.js.map +1 -1
- package/dist/components/VerticalScrollbar.js +2 -2
- package/dist/components/VerticalScrollbar.js.map +1 -1
- package/dist/components/dialogs/ExportSVGDialog.js +20 -20
- package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
- package/dist/components/dialogs/InterProScanDialog.js +6 -1
- package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
- package/dist/components/dialogs/UserProvidedDomainsDialog.js +1 -2
- package/dist/components/dialogs/UserProvidedDomainsDialog.js.map +1 -1
- package/dist/components/header/ColorSchemeMenu.js +1 -1
- package/dist/components/header/ColorSchemeMenu.js.map +1 -1
- package/dist/components/header/FileMenu.js +3 -2
- package/dist/components/header/FileMenu.js.map +1 -1
- package/dist/components/header/Header.js +1 -1
- package/dist/components/header/HeaderInfoArea.js +28 -8
- package/dist/components/header/HeaderInfoArea.js.map +1 -1
- package/dist/components/header/MSASettingsMenu.js +1 -1
- package/dist/components/header/MSASettingsMenu.js.map +1 -1
- package/dist/components/header/TreeSettingsMenu.js +1 -1
- package/dist/components/header/TreeSettingsMenu.js.map +1 -1
- package/dist/components/header/ZoomControls.js +7 -2
- package/dist/components/header/ZoomControls.js.map +1 -1
- package/dist/components/header/ZoomMenu.js +9 -0
- package/dist/components/header/ZoomMenu.js.map +1 -1
- package/dist/components/header/settingsMenuItems.js +24 -8
- package/dist/components/header/settingsMenuItems.js.map +1 -1
- package/dist/components/minimap/Minimap.js +6 -17
- package/dist/components/minimap/Minimap.js.map +1 -1
- package/dist/components/minimap/MinimapSVG.js +7 -17
- package/dist/components/minimap/MinimapSVG.js.map +1 -1
- package/dist/components/minimap/minimapLayout.d.ts +9 -0
- package/dist/components/minimap/minimapLayout.js +15 -0
- package/dist/components/minimap/minimapLayout.js.map +1 -0
- package/dist/components/msa/MSACanvas.js +6 -1
- package/dist/components/msa/MSACanvas.js.map +1 -1
- package/dist/components/msa/MSACanvasBlock.js +5 -1
- package/dist/components/msa/MSACanvasBlock.js.map +1 -1
- package/dist/components/msa/MSAMouseoverCanvas.js +2 -2
- package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
- package/dist/components/msa/getVisibleLeaves.d.ts +6 -0
- package/dist/components/msa/getVisibleLeaves.js +9 -0
- package/dist/components/msa/getVisibleLeaves.js.map +1 -0
- package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +2 -1
- package/dist/components/msa/renderBoxFeatureCanvasBlock.js +5 -6
- package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
- package/dist/components/msa/renderMSABlock.d.ts +2 -1
- package/dist/components/msa/renderMSABlock.js +100 -88
- package/dist/components/msa/renderMSABlock.js.map +1 -1
- package/dist/components/msa/renderMSAMouseover.js +5 -4
- package/dist/components/msa/renderMSAMouseover.js.map +1 -1
- package/dist/components/msa/visibleColRange.d.ts +8 -0
- package/dist/components/msa/visibleColRange.js +10 -0
- package/dist/components/msa/visibleColRange.js.map +1 -0
- package/dist/components/renderCtx.d.ts +7 -0
- package/dist/components/renderCtx.js +2 -0
- package/dist/components/renderCtx.js.map +1 -0
- package/dist/components/tracks/renderTracksSvg.d.ts +6 -5
- package/dist/components/tracks/renderTracksSvg.js +13 -5
- package/dist/components/tracks/renderTracksSvg.js.map +1 -1
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/components/tree/TreeCanvasBlock.js +2 -10
- package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
- package/dist/components/tree/renderTreeCanvas.d.ts +5 -4
- package/dist/components/tree/renderTreeCanvas.js +18 -26
- package/dist/components/tree/renderTreeCanvas.js.map +1 -1
- package/dist/components/util.d.ts +0 -14
- package/dist/components/util.js +0 -58
- package/dist/components/util.js.map +1 -1
- package/dist/constants.d.ts +4 -0
- package/dist/constants.js +7 -0
- package/dist/constants.js.map +1 -1
- package/dist/flatToTree.js +6 -0
- package/dist/flatToTree.js.map +1 -1
- package/dist/hierarchy.d.ts +3 -1
- package/dist/hierarchy.js +142 -89
- package/dist/hierarchy.js.map +1 -1
- package/dist/index.d.ts +1 -0
- package/dist/index.js +8 -0
- package/dist/index.js.map +1 -1
- package/dist/launchInterProScan.js +22 -9
- package/dist/launchInterProScan.js.map +1 -1
- package/dist/measureTextCanvas.js +2 -1
- package/dist/measureTextCanvas.js.map +1 -1
- package/dist/model.d.ts +234 -176
- package/dist/model.js +285 -259
- package/dist/model.js.map +1 -1
- package/dist/parseAsn1.js +8 -2
- package/dist/parseAsn1.js.map +1 -1
- package/dist/renderToSvg.d.ts +1 -1
- package/dist/renderToSvg.js +43 -46
- package/dist/renderToSvg.js.map +1 -1
- package/dist/rowCoordinateCalculations.d.ts +0 -9
- package/dist/rowCoordinateCalculations.js +0 -20
- package/dist/rowCoordinateCalculations.js.map +1 -1
- package/dist/setFontSize.d.ts +3 -0
- package/dist/setFontSize.js +14 -0
- package/dist/setFontSize.js.map +1 -0
- package/dist/useDevicePixelRatio.d.ts +1 -0
- package/dist/useDevicePixelRatio.js +27 -0
- package/dist/useDevicePixelRatio.js.map +1 -0
- package/dist/useWheelScroll.d.ts +3 -1
- package/dist/useWheelScroll.js +64 -22
- package/dist/useWheelScroll.js.map +1 -1
- package/dist/util.d.ts +5 -0
- package/dist/util.js +59 -1
- package/dist/util.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/webpack.js +0 -1
- package/dist/webpack.js.map +1 -1
- package/dist/wheelZoom.d.ts +4 -0
- package/dist/wheelZoom.js +43 -0
- package/dist/wheelZoom.js.map +1 -0
- package/package.json +5 -5
- package/src/calculateBlocks.ts +18 -51
- package/src/components/ConservationTrack.tsx +20 -45
- package/src/components/MSAView.tsx +10 -1
- package/src/components/ResizeHandles.tsx +101 -113
- package/src/components/TextTrack.tsx +31 -38
- package/src/components/Track.tsx +1 -1
- package/src/components/VerticalScrollbar.tsx +2 -2
- package/src/components/dialogs/ExportSVGDialog.tsx +27 -17
- package/src/components/dialogs/InterProScanDialog.tsx +6 -1
- package/src/components/dialogs/UserProvidedDomainsDialog.tsx +1 -2
- package/src/components/header/ColorSchemeMenu.tsx +1 -0
- package/src/components/header/FileMenu.tsx +3 -1
- package/src/components/header/Header.tsx +1 -1
- package/src/components/header/HeaderInfoArea.tsx +32 -7
- package/src/components/header/MSASettingsMenu.tsx +1 -0
- package/src/components/header/TreeSettingsMenu.tsx +1 -0
- package/src/components/header/ZoomControls.tsx +14 -1
- package/src/components/header/ZoomMenu.tsx +10 -0
- package/src/components/header/settingsMenuItems.ts +24 -8
- package/src/components/minimap/Minimap.tsx +6 -20
- package/src/components/minimap/MinimapSVG.tsx +10 -27
- package/src/components/minimap/minimapLayout.ts +17 -0
- package/src/components/msa/MSACanvas.tsx +9 -0
- package/src/components/msa/MSACanvasBlock.tsx +7 -1
- package/src/components/msa/MSAMouseoverCanvas.tsx +4 -3
- package/src/components/msa/getVisibleLeaves.ts +21 -0
- package/src/components/msa/renderBoxFeatureCanvasBlock.ts +9 -9
- package/src/components/msa/renderMSABlock.ts +123 -125
- package/src/components/msa/renderMSAMouseover.ts +5 -4
- package/src/components/msa/visibleColRange.ts +17 -0
- package/src/components/renderCtx.ts +29 -0
- package/src/components/tracks/renderTracksSvg.ts +20 -10
- package/src/components/tree/TreeCanvas.tsx +3 -1
- package/src/components/tree/TreeCanvasBlock.tsx +2 -12
- package/src/components/tree/renderTreeCanvas.ts +27 -30
- package/src/components/util.ts +0 -81
- package/src/constants.ts +8 -0
- package/src/flatToTree.test.ts +30 -0
- package/src/flatToTree.ts +10 -1
- package/src/hierarchy.test.ts +53 -1
- package/src/hierarchy.ts +153 -100
- package/src/index.ts +8 -0
- package/src/launchInterProScan.ts +33 -11
- package/src/measureTextCanvas.ts +3 -1
- package/src/model.ts +359 -306
- package/src/parseAsn1.test.ts +6 -0
- package/src/parseAsn1.ts +11 -3
- package/src/renderToSvg.tsx +99 -95
- package/src/rowCoordinateCalculations.test.ts +0 -51
- package/src/rowCoordinateCalculations.ts +0 -23
- package/src/setFontSize.test.ts +33 -0
- package/src/setFontSize.ts +20 -0
- package/src/useDevicePixelRatio.ts +29 -0
- package/src/useWheelScroll.ts +79 -21
- package/src/util.ts +60 -1
- package/src/version.ts +1 -1
- package/src/webpack.ts +0 -1
- package/src/wheelZoom.test.ts +46 -0
- package/src/wheelZoom.ts +47 -0
package/dist/useWheelScroll.js
CHANGED
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@@ -1,8 +1,14 @@
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import { useEffect, useRef, useState } from 'react';
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import { SCROLL_ZOOM_DIVISOR, getZoomNormalizer, normalizeWheelDelta, zoomFactorFromAccum, } from "./wheelZoom.js";
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export function useWheelScroll({ ref, onScrollX, onScrollY, onZoom, scrollZoom, }) {
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const scheduled = useRef(false);
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const zoomScheduled = useRef(false);
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const deltaX = useRef(0);
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const deltaY = useRef(0);
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const zoomAccum = useRef(0);
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const zoomX = useRef(0);
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const zoomY = useRef(0);
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const lastZoomTime = useRef(null);
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const prevX = useRef(0);
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const prevY = useRef(0);
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const [mouseDragging, setMouseDragging] = useState(false);
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return;
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}
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function onWheel(event) {
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// ctrlKey is also set by trackpad pinch gestures on all platforms. when
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// scrollZoom is on, a plain vertical-dominant wheel zooms too; holding
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// shift is the escape hatch to pan instead.
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const isCtrlZoom = event.ctrlKey || event.metaKey;
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const isScrollZoom = scrollZoom &&
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!event.shiftKey &&
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Math.abs(event.deltaY) >= Math.abs(event.deltaX);
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if (onZoom && (isCtrlZoom || isScrollZoom)) {
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const rect = curr.getBoundingClientRect();
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// normalize away deltaMode (line/page), then divide by an adaptive
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// factor so fine pinches and coarse notches feel consistent
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const dY = normalizeWheelDelta(event.deltaY, event.deltaMode);
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const divisor = isCtrlZoom ? getZoomNormalizer(dY) : SCROLL_ZOOM_DIVISOR;
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zoomAccum.current += dY / divisor;
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zoomX.current = event.clientX - rect.left;
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zoomY.current = event.clientY - rect.top;
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if (!zoomScheduled.current) {
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zoomScheduled.current = true;
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requestAnimationFrame(now => {
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const elapsed = lastZoomTime.current === null ? 16.67 : now - lastZoomTime.current;
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lastZoomTime.current = now;
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onZoom(zoomFactorFromAccum(zoomAccum.current, Math.min(100, elapsed)), zoomX.current, zoomY.current);
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zoomAccum.current = 0;
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zoomScheduled.current = false;
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});
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}
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event.preventDefault();
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event.stopPropagation();
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return;
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}
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// only swallow the wheel event on an axis we actually handle, otherwise a
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// vertical wheel over an x-only scroller (e.g. a Track) blocks page scroll
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const consumeX = !!onScrollX && event.deltaX !== 0;
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const consumeY = !!onScrollY && event.deltaY !== 0;
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if (consumeX || consumeY) {
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if (onScrollX) {
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deltaX.current += event.deltaX;
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}
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if (onScrollY) {
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deltaY.current += event.deltaY;
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}
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if (!scheduled.current) {
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scheduled.current = true;
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requestAnimationFrame(() => {
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if (onScrollX) {
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onScrollX(-deltaX.current);
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deltaX.current = 0;
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}
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if (onScrollY) {
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onScrollY(-deltaY.current);
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deltaY.current = 0;
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}
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scheduled.current = false;
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});
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}
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event.preventDefault();
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event.stopPropagation();
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}
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event.preventDefault();
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event.stopPropagation();
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}
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curr.addEventListener('wheel', onWheel, { passive: false });
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return () => {
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curr.removeEventListener('wheel', onWheel);
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};
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}, [ref, onScrollX, onScrollY]);
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}, [ref, onScrollX, onScrollY, onZoom, scrollZoom]);
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useEffect(() => {
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if (!mouseDragging) {
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return;
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{"version":3,"file":"useWheelScroll.js","sourceRoot":"","sources":["../src/useWheelScroll.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEnD,MAAM,UAAU,cAAc,CAAC,EAC7B,GAAG,EACH,SAAS,EACT,SAAS,
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|
+
{"version":3,"file":"useWheelScroll.js","sourceRoot":"","sources":["../src/useWheelScroll.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEnD,OAAO,EACL,mBAAmB,EACnB,iBAAiB,EACjB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,gBAAgB,CAAA;AAEvB,MAAM,UAAU,cAAc,CAAC,EAC7B,GAAG,EACH,SAAS,EACT,SAAS,EACT,MAAM,EACN,UAAU,GAOX;IACC,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,aAAa,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACnC,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,MAAM,SAAS,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IAC3B,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACvB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACvB,MAAM,YAAY,GAAG,MAAM,CAAgB,IAAI,CAAC,CAAA;IAChD,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACvB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACvB,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAEzD,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAM;QACR,CAAC;QACD,SAAS,OAAO,CAAC,KAAiB;YAChC,wEAAwE;YACxE,uEAAuE;YACvE,4CAA4C;YAC5C,MAAM,UAAU,GAAG,KAAK,CAAC,OAAO,IAAI,KAAK,CAAC,OAAO,CAAA;YACjD,MAAM,YAAY,GAChB,UAAU;gBACV,CAAC,KAAK,CAAC,QAAQ;gBACf,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;YAClD,IAAI,MAAM,IAAI,CAAC,UAAU,IAAI,YAAY,CAAC,EAAE,CAAC;gBAC3C,MAAM,IAAI,GAAG,IAAK,CAAC,qBAAqB,EAAE,CAAA;gBAC1C,mEAAmE;gBACnE,4DAA4D;gBAC5D,MAAM,EAAE,GAAG,mBAAmB,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,SAAS,CAAC,CAAA;gBAC7D,MAAM,OAAO,GAAG,UAAU,CAAC,CAAC,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,mBAAmB,CAAA;gBACxE,SAAS,CAAC,OAAO,IAAI,EAAE,GAAG,OAAO,CAAA;gBACjC,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,IAAI,CAAA;gBACzC,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,GAAG,CAAA;gBACxC,IAAI,CAAC,aAAa,CAAC,OAAO,EAAE,CAAC;oBAC3B,aAAa,CAAC,OAAO,GAAG,IAAI,CAAA;oBAC5B,qBAAqB,CAAC,GAAG,CAAC,EAAE;wBAC1B,MAAM,OAAO,GACX,YAAY,CAAC,OAAO,KAAK,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,YAAY,CAAC,OAAO,CAAA;wBACpE,YAAY,CAAC,OAAO,GAAG,GAAG,CAAA;wBAC1B,MAAM,CACJ,mBAAmB,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,OAAO,CAAC,CAAC,EAC9D,KAAK,CAAC,OAAO,EACb,KAAK,CAAC,OAAO,CACd,CAAA;wBACD,SAAS,CAAC,OAAO,GAAG,CAAC,CAAA;wBACrB,aAAa,CAAC,OAAO,GAAG,KAAK,CAAA;oBAC/B,CAAC,CAAC,CAAA;gBACJ,CAAC;gBACD,KAAK,CAAC,cAAc,EAAE,CAAA;gBACtB,KAAK,CAAC,eAAe,EAAE,CAAA;gBACvB,OAAM;YACR,CAAC;YACD,0EAA0E;YAC1E,2EAA2E;YAC3E,MAAM,QAAQ,GAAG,CAAC,CAAC,SAAS,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,CAAA;YAClD,MAAM,QAAQ,GAAG,CAAC,CAAC,SAAS,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,CAAA;YAClD,IAAI,QAAQ,IAAI,QAAQ,EAAE,CAAC;gBACzB,IAAI,SAAS,EAAE,CAAC;oBACd,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBAChC,CAAC;gBACD,IAAI,SAAS,EAAE,CAAC;oBACd,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBAChC,CAAC;gBAED,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;oBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,qBAAqB,CAAC,GAAG,EAAE;wBACzB,IAAI,SAAS,EAAE,CAAC;4BACd,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;4BAC1B,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;wBACpB,CAAC;wBACD,IAAI,SAAS,EAAE,CAAC;4BACd,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;4BAC1B,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;wBACpB,CAAC;wBACD,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;oBAC3B,CAAC,CAAC,CAAA;gBACJ,CAAC;gBACD,KAAK,CAAC,cAAc,EAAE,CAAA;gBACtB,KAAK,CAAC,eAAe,EAAE,CAAA;YACzB,CAAC;QACH,CAAC;QACD,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC,CAAA;QAC3D,OAAO,GAAG,EAAE;YACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QAC5C,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,GAAG,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,EAAE,UAAU,CAAC,CAAC,CAAA;IAEnD,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,CAAC,aAAa,EAAE,CAAC;YACnB,OAAM;QACR,CAAC;QACD,SAAS,eAAe,CAAC,KAAiB;YACxC,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,MAAM,SAAS,GAAG,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC/C,MAAM,SAAS,GAAG,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC/C,IAAI,CAAC,SAAS,IAAI,SAAS,CAAC,IAAI,CAAC,SAAS,IAAI,SAAS,CAAC,EAAE,CAAC;gBACzD,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;oBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,qBAAqB,CAAC,GAAG,EAAE;wBACzB,SAAS,EAAE,CAAC,SAAS,CAAC,CAAA;wBACtB,SAAS,EAAE,CAAC,SAAS,CAAC,CAAA;wBACtB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;wBACzB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;wBAC7B,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;oBAC/B,CAAC,CAAC,CAAA;gBACJ,CAAC;YACH,CAAC;QACH,CAAC;QAED,SAAS,aAAa;YACpB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,gBAAgB,CAAC,KAAK,CAAC,CAAA;QACzB,CAAC;QAED,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;QAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;QACvD,OAAO,GAAG,EAAE;YACV,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;QAC5D,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,aAAa,EAAE,SAAS,EAAE,SAAS,CAAC,CAAC,CAAA;IAEzC,SAAS,WAAW,CAAC,KAAuB;QAC1C,MAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;QAC1C,IAAI,MAAM,CAAC,SAAS,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC;YAC/C,OAAM;QACR,CAAC;QACD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC7B,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC7B,gBAAgB,CAAC,IAAI,CAAC,CAAA;QACxB,CAAC;IACH,CAAC;IAED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|
package/dist/util.d.ts
CHANGED
|
@@ -1,4 +1,5 @@
|
|
|
1
1
|
import type { Theme } from '@mui/material';
|
|
2
|
+
export declare function adjustColorForContrast(color: string, bg: string): string;
|
|
2
3
|
export declare function transform<T>(obj: Record<string, T>, cb: (arg0: [string, T]) => [string, T]): {
|
|
3
4
|
[k: string]: T;
|
|
4
5
|
};
|
|
@@ -6,6 +7,10 @@ export declare function colorContrast(colorScheme: Record<string, string>, theme
|
|
|
6
7
|
[k: string]: string;
|
|
7
8
|
};
|
|
8
9
|
export declare function skipBlanks(blanks: number[], str: string): string;
|
|
10
|
+
export declare function computeRowInsertions(blanks: number[], seq: string): {
|
|
11
|
+
pos: number;
|
|
12
|
+
letters: string;
|
|
13
|
+
}[];
|
|
9
14
|
export declare function len(a: {
|
|
10
15
|
end: number;
|
|
11
16
|
start: number;
|
package/dist/util.js
CHANGED
|
@@ -1,6 +1,28 @@
|
|
|
1
1
|
import { colord, extend } from 'colord';
|
|
2
|
+
import a11yPlugin from 'colord/plugins/a11y';
|
|
2
3
|
import namesPlugin from 'colord/plugins/names';
|
|
3
|
-
extend([namesPlugin]);
|
|
4
|
+
extend([namesPlugin, a11yPlugin]);
|
|
5
|
+
const contrastAdjustCache = new Map();
|
|
6
|
+
// Adjusts a background-tile color until it meets WCAG AA (4.5:1) contrast
|
|
7
|
+
// against `bg`, so it can be used as letter text in letter-color mode.
|
|
8
|
+
// Darkens on light backgrounds, lightens on dark backgrounds.
|
|
9
|
+
export function adjustColorForContrast(color, bg) {
|
|
10
|
+
const cacheKey = `${color}|${bg}`;
|
|
11
|
+
const cached = contrastAdjustCache.get(cacheKey);
|
|
12
|
+
if (cached !== undefined) {
|
|
13
|
+
return cached;
|
|
14
|
+
}
|
|
15
|
+
let c = colord(color);
|
|
16
|
+
if (!c.isReadable(bg)) {
|
|
17
|
+
const bgIsDark = colord(bg).luminance() < 0.5;
|
|
18
|
+
for (let i = 0; i < 40 && !c.isReadable(bg); i++) {
|
|
19
|
+
c = bgIsDark ? c.lighten(0.05) : c.darken(0.05);
|
|
20
|
+
}
|
|
21
|
+
}
|
|
22
|
+
const result = c.toHex();
|
|
23
|
+
contrastAdjustCache.set(cacheKey, result);
|
|
24
|
+
return result;
|
|
25
|
+
}
|
|
4
26
|
export function transform(obj, cb) {
|
|
5
27
|
return Object.fromEntries(Object.entries(obj).map(cb));
|
|
6
28
|
}
|
|
@@ -27,6 +49,42 @@ export function skipBlanks(blanks, str) {
|
|
|
27
49
|
}
|
|
28
50
|
return chunks.join('');
|
|
29
51
|
}
|
|
52
|
+
export function computeRowInsertions(blanks, seq) {
|
|
53
|
+
const insertions = [];
|
|
54
|
+
const blanksLen = blanks.length;
|
|
55
|
+
let displayPos = 0;
|
|
56
|
+
let blankIdx = 0;
|
|
57
|
+
let currentInsertPos = -1;
|
|
58
|
+
let letterChars = [];
|
|
59
|
+
for (let i = 0; i < seq.length; i++) {
|
|
60
|
+
if (blankIdx < blanksLen && blanks[blankIdx] === i) {
|
|
61
|
+
// bit trick: (code - 45) >>> 0 <= 1 checks for '-' (45) or '.' (46)
|
|
62
|
+
if (!((seq.charCodeAt(i) - 45) >>> 0 <= 1)) {
|
|
63
|
+
if (currentInsertPos === displayPos) {
|
|
64
|
+
letterChars.push(seq[i]);
|
|
65
|
+
}
|
|
66
|
+
else {
|
|
67
|
+
if (letterChars.length > 0) {
|
|
68
|
+
insertions.push({
|
|
69
|
+
pos: currentInsertPos,
|
|
70
|
+
letters: letterChars.join(''),
|
|
71
|
+
});
|
|
72
|
+
}
|
|
73
|
+
currentInsertPos = displayPos;
|
|
74
|
+
letterChars = [seq[i]];
|
|
75
|
+
}
|
|
76
|
+
}
|
|
77
|
+
blankIdx++;
|
|
78
|
+
}
|
|
79
|
+
else {
|
|
80
|
+
displayPos++;
|
|
81
|
+
}
|
|
82
|
+
}
|
|
83
|
+
if (letterChars.length > 0) {
|
|
84
|
+
insertions.push({ pos: currentInsertPos, letters: letterChars.join('') });
|
|
85
|
+
}
|
|
86
|
+
return insertions;
|
|
87
|
+
}
|
|
30
88
|
export function len(a) {
|
|
31
89
|
return a.end - a.start;
|
|
32
90
|
}
|
package/dist/util.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAA;AACvC,OAAO,WAAW,MAAM,sBAAsB,CAAA;AAI9C,MAAM,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;
|
|
1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAA;AACvC,OAAO,UAAU,MAAM,qBAAqB,CAAA;AAC5C,OAAO,WAAW,MAAM,sBAAsB,CAAA;AAI9C,MAAM,CAAC,CAAC,WAAW,EAAE,UAAU,CAAC,CAAC,CAAA;AAEjC,MAAM,mBAAmB,GAAG,IAAI,GAAG,EAAkB,CAAA;AAErD,0EAA0E;AAC1E,uEAAuE;AACvE,8DAA8D;AAC9D,MAAM,UAAU,sBAAsB,CAAC,KAAa,EAAE,EAAU;IAC9D,MAAM,QAAQ,GAAG,GAAG,KAAK,IAAI,EAAE,EAAE,CAAA;IACjC,MAAM,MAAM,GAAG,mBAAmB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAA;IAChD,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;QACzB,OAAO,MAAM,CAAA;IACf,CAAC;IACD,IAAI,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACrB,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,EAAE,CAAC,EAAE,CAAC;QACtB,MAAM,QAAQ,GAAG,MAAM,CAAC,EAAE,CAAC,CAAC,SAAS,EAAE,GAAG,GAAG,CAAA;QAC7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YACjD,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;QACjD,CAAC;IACH,CAAC;IACD,MAAM,MAAM,GAAG,CAAC,CAAC,KAAK,EAAE,CAAA;IACxB,mBAAmB,CAAC,GAAG,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAA;IACzC,OAAO,MAAM,CAAA;AACf,CAAC;AAED,MAAM,UAAU,SAAS,CACvB,GAAsB,EACtB,EAAsC;IAEtC,OAAO,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;AACxD,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,WAAmC,EACnC,KAAY;IAEZ,OAAO,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC;QACjD,MAAM;QACN,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;KACrD,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,MAAgB,EAAE,GAAW;IACtD,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,GAAG,CAAA;IACZ,CAAC;IACD,MAAM,MAAM,GAAG,EAAE,CAAA;IACjB,IAAI,OAAO,GAAG,CAAC,CAAA;IACf,KAAK,MAAM,QAAQ,IAAI,MAAM,EAAE,CAAC;QAC9B,IAAI,QAAQ,GAAG,OAAO,EAAE,CAAC;YACvB,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC,CAAA;QAC3C,CAAC;QACD,OAAO,GAAG,QAAQ,GAAG,CAAC,CAAA;IACxB,CAAC;IACD,IAAI,OAAO,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC;QACzB,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAA;IACjC,CAAC;IACD,OAAO,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;AACxB,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,MAAgB,EAAE,GAAW;IAChE,MAAM,UAAU,GAAuC,EAAE,CAAA;IACzD,MAAM,SAAS,GAAG,MAAM,CAAC,MAAM,CAAA;IAC/B,IAAI,UAAU,GAAG,CAAC,CAAA;IAClB,IAAI,QAAQ,GAAG,CAAC,CAAA;IAChB,IAAI,gBAAgB,GAAG,CAAC,CAAC,CAAA;IACzB,IAAI,WAAW,GAAa,EAAE,CAAA;IAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACpC,IAAI,QAAQ,GAAG,SAAS,IAAI,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;YACnD,oEAAoE;YACpE,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC;gBAC3C,IAAI,gBAAgB,KAAK,UAAU,EAAE,CAAC;oBACpC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAE,CAAC,CAAA;gBAC3B,CAAC;qBAAM,CAAC;oBACN,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;wBAC3B,UAAU,CAAC,IAAI,CAAC;4BACd,GAAG,EAAE,gBAAgB;4BACrB,OAAO,EAAE,WAAW,CAAC,IAAI,CAAC,EAAE,CAAC;yBAC9B,CAAC,CAAA;oBACJ,CAAC;oBACD,gBAAgB,GAAG,UAAU,CAAA;oBAC7B,WAAW,GAAG,CAAC,GAAG,CAAC,CAAC,CAAE,CAAC,CAAA;gBACzB,CAAC;YACH,CAAC;YACD,QAAQ,EAAE,CAAA;QACZ,CAAC;aAAM,CAAC;YACN,UAAU,EAAE,CAAA;QACd,CAAC;IACH,CAAC;IACD,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3B,UAAU,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,gBAAgB,EAAE,OAAO,EAAE,WAAW,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC,CAAA;IAC3E,CAAC;IACD,OAAO,UAAU,CAAA;AACnB,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAiC;IACnD,OAAO,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK,CAAA;AACxB,CAAC;AAED,8CAA8C;AAC9C,oCAAoC;AACpC,MAAM,UAAU,OAAO,CAAC,CAAU;IAChC,OAAO,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,GAAG,CAAA;AAC/B,CAAC"}
|
package/dist/version.d.ts
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
export declare const version = "5.
|
|
1
|
+
export declare const version = "5.2.1";
|
package/dist/version.js
CHANGED
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
export const version = '5.
|
|
1
|
+
export const version = '5.2.1';
|
|
2
2
|
//# sourceMappingURL=version.js.map
|
package/dist/webpack.js
CHANGED
|
@@ -2,6 +2,5 @@ import * as React from 'react';
|
|
|
2
2
|
export { default as MSAView } from "./components/Loading.js";
|
|
3
3
|
export { default as MSAModelF } from "./model.js";
|
|
4
4
|
export * from 'react-dom/client';
|
|
5
|
-
// eslint-disable-next-line unicorn/prefer-export-from
|
|
6
5
|
export { React };
|
|
7
6
|
//# sourceMappingURL=webpack.js.map
|
package/dist/webpack.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"webpack.js","sourceRoot":"","sources":["../src/webpack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,KAAK,MAAM,OAAO,CAAA;AAE9B,OAAO,EAAE,OAAO,IAAI,OAAO,EAAE,MAAM,yBAA0B,CAAA;AAC7D,OAAO,EAAqB,OAAO,IAAI,SAAS,EAAE,MAAM,YAAY,CAAA;AAEpE,cAAc,kBAAkB,CAAA;AAEhC,
|
|
1
|
+
{"version":3,"file":"webpack.js","sourceRoot":"","sources":["../src/webpack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,KAAK,MAAM,OAAO,CAAA;AAE9B,OAAO,EAAE,OAAO,IAAI,OAAO,EAAE,MAAM,yBAA0B,CAAA;AAC7D,OAAO,EAAqB,OAAO,IAAI,SAAS,EAAE,MAAM,YAAY,CAAA;AAEpE,cAAc,kBAAkB,CAAA;AAEhC,OAAO,EAAE,KAAK,EAAE,CAAA"}
|
|
@@ -0,0 +1,4 @@
|
|
|
1
|
+
export declare const SCROLL_ZOOM_DIVISOR = 500;
|
|
2
|
+
export declare function normalizeWheelDelta(delta: number, mode: number): number;
|
|
3
|
+
export declare function getZoomNormalizer(deltaY: number): 500 | 25 | 150 | 75;
|
|
4
|
+
export declare function zoomFactorFromAccum(zoomAccum: number, elapsedMs: number): number;
|
|
@@ -0,0 +1,43 @@
|
|
|
1
|
+
// Wheel / trackpad-pinch delta handling, adapted from @jbrowse/core's
|
|
2
|
+
// util/wheelZoom (not yet in our pinned @jbrowse/core). Turns raw wheel deltas
|
|
3
|
+
// into a per-frame zoom factor that feels consistent across fine trackpad
|
|
4
|
+
// pinches and coarse mouse notches.
|
|
5
|
+
// Fixed divisor for plain-wheel scroll-zoom mode, where deltas are big notches.
|
|
6
|
+
export const SCROLL_ZOOM_DIVISOR = 500;
|
|
7
|
+
// Cap the zoom change per millisecond so a burst of momentum-scroll events
|
|
8
|
+
// coalesced into one frame can't jump the zoom level (0.2 per ~60fps frame).
|
|
9
|
+
const MAX_ZOOM_RATE_PER_MS = 0.2 / 16.67;
|
|
10
|
+
// Convert a wheel delta to pixels regardless of the browser's deltaMode; some
|
|
11
|
+
// browsers/mice report lines or pages instead of pixels.
|
|
12
|
+
export function normalizeWheelDelta(delta, mode) {
|
|
13
|
+
if (mode === 1) {
|
|
14
|
+
return delta * 16; // DOM_DELTA_LINE
|
|
15
|
+
}
|
|
16
|
+
if (mode === 2) {
|
|
17
|
+
return delta * 100; // DOM_DELTA_PAGE
|
|
18
|
+
}
|
|
19
|
+
return delta; // DOM_DELTA_PIXEL
|
|
20
|
+
}
|
|
21
|
+
// Adaptive divisor: tiny pinch deltas zoom in larger steps, big mouse notches
|
|
22
|
+
// in finer steps, so a trackpad pinch and a mouse wheel feel similar.
|
|
23
|
+
export function getZoomNormalizer(deltaY) {
|
|
24
|
+
const abs = Math.abs(deltaY);
|
|
25
|
+
if (abs < 6) {
|
|
26
|
+
return 25;
|
|
27
|
+
}
|
|
28
|
+
if (abs > 150) {
|
|
29
|
+
return 500;
|
|
30
|
+
}
|
|
31
|
+
if (abs > 30) {
|
|
32
|
+
return 150;
|
|
33
|
+
}
|
|
34
|
+
return 75;
|
|
35
|
+
}
|
|
36
|
+
// Turn accumulated, normalized zoom intent into a colWidth/rowHeight multiplier.
|
|
37
|
+
// Positive accum (wheel toward user) zooms out (factor < 1); negative zooms in.
|
|
38
|
+
export function zoomFactorFromAccum(zoomAccum, elapsedMs) {
|
|
39
|
+
const max = MAX_ZOOM_RATE_PER_MS * elapsedMs;
|
|
40
|
+
const d = Math.max(-max, Math.min(max, zoomAccum));
|
|
41
|
+
return d > 0 ? 1 / (1 + d) : 1 - d;
|
|
42
|
+
}
|
|
43
|
+
//# sourceMappingURL=wheelZoom.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"wheelZoom.js","sourceRoot":"","sources":["../src/wheelZoom.ts"],"names":[],"mappings":"AAAA,sEAAsE;AACtE,+EAA+E;AAC/E,0EAA0E;AAC1E,oCAAoC;AAEpC,gFAAgF;AAChF,MAAM,CAAC,MAAM,mBAAmB,GAAG,GAAG,CAAA;AAEtC,2EAA2E;AAC3E,6EAA6E;AAC7E,MAAM,oBAAoB,GAAG,GAAG,GAAG,KAAK,CAAA;AAExC,8EAA8E;AAC9E,yDAAyD;AACzD,MAAM,UAAU,mBAAmB,CAAC,KAAa,EAAE,IAAY;IAC7D,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;QACf,OAAO,KAAK,GAAG,EAAE,CAAA,CAAC,iBAAiB;IACrC,CAAC;IACD,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;QACf,OAAO,KAAK,GAAG,GAAG,CAAA,CAAC,iBAAiB;IACtC,CAAC;IACD,OAAO,KAAK,CAAA,CAAC,kBAAkB;AACjC,CAAC;AAED,8EAA8E;AAC9E,sEAAsE;AACtE,MAAM,UAAU,iBAAiB,CAAC,MAAc;IAC9C,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAC5B,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;QACZ,OAAO,EAAE,CAAA;IACX,CAAC;IACD,IAAI,GAAG,GAAG,GAAG,EAAE,CAAC;QACd,OAAO,GAAG,CAAA;IACZ,CAAC;IACD,IAAI,GAAG,GAAG,EAAE,EAAE,CAAC;QACb,OAAO,GAAG,CAAA;IACZ,CAAC;IACD,OAAO,EAAE,CAAA;AACX,CAAC;AAED,iFAAiF;AACjF,gFAAgF;AAChF,MAAM,UAAU,mBAAmB,CAAC,SAAiB,EAAE,SAAiB;IACtE,MAAM,GAAG,GAAG,oBAAoB,GAAG,SAAS,CAAA;IAC5C,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC,CAAA;IAClD,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;AACpC,CAAC"}
|
package/package.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "react-msaview",
|
|
3
3
|
"author": "Colin",
|
|
4
|
-
"version": "5.
|
|
4
|
+
"version": "5.2.1",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"type": "module",
|
|
7
7
|
"repository": {
|
|
@@ -35,15 +35,15 @@
|
|
|
35
35
|
"react-dom": ">=16.8.0"
|
|
36
36
|
},
|
|
37
37
|
"devDependencies": {
|
|
38
|
-
"@types/node": "^25.9.
|
|
38
|
+
"@types/node": "^25.9.2"
|
|
39
39
|
},
|
|
40
40
|
"dependencies": {
|
|
41
41
|
"@mui/icons-material": "^7.3.11",
|
|
42
42
|
"@mui/material": "^7.3.11",
|
|
43
43
|
"colord": "^2.9.3",
|
|
44
|
-
"flatbush": "^4.
|
|
45
|
-
"@jbrowse/svgcanvas": "5.
|
|
46
|
-
"msa-parsers": "5.
|
|
44
|
+
"flatbush": "^4.6.1",
|
|
45
|
+
"@jbrowse/svgcanvas": "5.2.1",
|
|
46
|
+
"msa-parsers": "5.2.1"
|
|
47
47
|
},
|
|
48
48
|
"scripts": {
|
|
49
49
|
"clean": "rimraf dist bundle",
|
package/src/calculateBlocks.ts
CHANGED
|
@@ -1,58 +1,25 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
1
|
+
// Returns the block offsets (in pixels) needed to cover the viewport along one
|
|
2
|
+
// axis. mapSize/viewportPos/viewportSize are all in pixels. The clamp pins the
|
|
3
|
+
// block set to the content edge so an over-scroll past the end still fills the
|
|
4
|
+
// viewport rather than leaving a gap.
|
|
5
|
+
export function calculateBlocks({
|
|
6
|
+
mapSize,
|
|
3
7
|
blockSize,
|
|
4
|
-
|
|
5
|
-
|
|
8
|
+
viewportPos,
|
|
9
|
+
viewportSize,
|
|
6
10
|
}: {
|
|
7
|
-
|
|
11
|
+
mapSize: number
|
|
8
12
|
blockSize: number
|
|
9
|
-
|
|
10
|
-
|
|
13
|
+
viewportPos: number
|
|
14
|
+
viewportSize: number
|
|
11
15
|
}) {
|
|
12
|
-
const
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
)
|
|
16
|
+
const clamped = Math.max(0, Math.min(viewportPos, mapSize - viewportSize))
|
|
17
|
+
const minTile = Math.floor(clamped / blockSize)
|
|
18
|
+
const maxTile = Math.floor((clamped + viewportSize - 1) / blockSize)
|
|
16
19
|
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
(clampedViewportY + viewportHeight - 1) / blockSize,
|
|
21
|
-
)
|
|
22
|
-
|
|
23
|
-
// Generate list of visible tiles
|
|
24
|
-
const blocksY = []
|
|
25
|
-
for (let tileY = minTileY; tileY <= maxTileY; tileY++) {
|
|
26
|
-
blocksY.push(tileY * blockSize)
|
|
20
|
+
const blocks = []
|
|
21
|
+
for (let tile = minTile; tile <= maxTile; tile++) {
|
|
22
|
+
blocks.push(tile * blockSize)
|
|
27
23
|
}
|
|
28
|
-
|
|
29
|
-
return blocksY
|
|
30
|
-
}
|
|
31
|
-
|
|
32
|
-
export function blocksX({
|
|
33
|
-
mapWidth,
|
|
34
|
-
blockSize,
|
|
35
|
-
viewportX,
|
|
36
|
-
viewportWidth,
|
|
37
|
-
}: {
|
|
38
|
-
mapWidth: number
|
|
39
|
-
blockSize: number
|
|
40
|
-
viewportX: number
|
|
41
|
-
viewportWidth: number
|
|
42
|
-
}) {
|
|
43
|
-
const clampedViewportX = Math.max(
|
|
44
|
-
0,
|
|
45
|
-
Math.min(viewportX, mapWidth - viewportWidth),
|
|
46
|
-
)
|
|
47
|
-
|
|
48
|
-
const minTileX = Math.floor(clampedViewportX / blockSize)
|
|
49
|
-
const maxTileX = Math.floor(
|
|
50
|
-
(clampedViewportX + viewportWidth - 1) / blockSize,
|
|
51
|
-
)
|
|
52
|
-
const blocksX = []
|
|
53
|
-
for (let tileX = minTileX; tileX <= maxTileX; tileX++) {
|
|
54
|
-
blocksX.push(tileX * blockSize)
|
|
55
|
-
}
|
|
56
|
-
|
|
57
|
-
return blocksX
|
|
24
|
+
return blocks
|
|
58
25
|
}
|
|
@@ -1,8 +1,9 @@
|
|
|
1
1
|
import React, { useEffect, useRef } from 'react'
|
|
2
2
|
|
|
3
|
-
import {
|
|
3
|
+
import { autorun } from 'mobx'
|
|
4
4
|
import { observer } from 'mobx-react'
|
|
5
5
|
|
|
6
|
+
import { ConservationTrackResizeHandle } from './ResizeHandles.tsx'
|
|
6
7
|
import { drawConservationBars } from './tracks/renderTracksSvg.ts'
|
|
7
8
|
|
|
8
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import type { MsaViewModel } from '../model.ts'
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@@ -17,42 +18,32 @@ const ConservationBlock = observer(function ({
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offsetX: number
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trackHeight: number
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}) {
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20
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-
const { blockSize, scrollX,
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model
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+
const { blockSize, scrollX, highResScaleFactor } = model
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const ref = useRef<HTMLCanvasElement>(null)
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useEffect(() => {
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-
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-
return
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}
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-
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-
const ctx = ref.current.getContext('2d')
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+
const ctx = ref.current?.getContext('2d')
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if (!ctx) {
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return
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}
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+
return autorun(() => {
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+
const { blockSize, colWidth, highResScaleFactor, conservation } = model
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32
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+
ctx.resetTransform()
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+
ctx.scale(highResScaleFactor, highResScaleFactor)
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ctx.clearRect(0, 0, blockSize, trackHeight)
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35
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+
ctx.translate(-offsetX, 0)
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-
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-
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-
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-
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-
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-
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-
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42
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-
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colWidth,
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trackHeight,
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45
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-
offsetX,
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46
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-
blockSize,
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37
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+
drawConservationBars({
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ctx,
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39
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conservation,
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40
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+
colWidth,
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41
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+
trackHeight,
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42
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+
offsetX,
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43
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+
blockSize,
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44
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+
})
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45
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})
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48
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-
}, [
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49
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-
blockSize,
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50
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-
colWidth,
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51
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-
trackHeight,
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52
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offsetX,
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53
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-
highResScaleFactor,
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54
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-
conservation,
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55
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-
])
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46
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+
}, [model, offsetX, trackHeight])
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56
47
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57
48
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return (
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58
49
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<canvas
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@@ -96,23 +87,7 @@ const ConservationTrack = observer(function ({
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96
87
|
trackHeight={trackHeight}
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97
88
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/>
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|
98
89
|
))}
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|
99
|
-
<
|
|
100
|
-
onDrag={delta => {
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101
|
-
model.setConservationTrackHeight(
|
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102
|
-
Math.max(10, model.conservationTrackHeight + delta),
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103
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-
)
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104
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-
return delta
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105
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-
}}
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106
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-
style={{
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107
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-
position: 'absolute',
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108
|
-
bottom: 0,
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109
|
-
left: 0,
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|
110
|
-
height: 4,
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111
|
-
width: '100%',
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112
|
-
zIndex: 1,
|
|
113
|
-
background: 'rgba(200,200,200,0.5)',
|
|
114
|
-
}}
|
|
115
|
-
/>
|
|
90
|
+
<ConservationTrackResizeHandle model={model} />
|
|
116
91
|
</div>
|
|
117
92
|
)
|
|
118
93
|
})
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|
@@ -1,7 +1,8 @@
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1
|
-
import React, { Suspense } from 'react'
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1
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+
import React, { Suspense, useEffect } from 'react'
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|
2
2
|
|
|
3
3
|
import { observer } from 'mobx-react'
|
|
4
4
|
|
|
5
|
+
import { useDevicePixelRatio } from '../useDevicePixelRatio.ts'
|
|
5
6
|
import {
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|
6
7
|
HorizontalResizeHandle,
|
|
7
8
|
VerticalResizeHandle,
|
|
@@ -128,6 +129,14 @@ const View = observer(function ({ model }: { model: MsaViewModel }) {
|
|
|
128
129
|
|
|
129
130
|
const MSAView = observer(function ({ model }: { model: MsaViewModel }) {
|
|
130
131
|
const { height, viewInitialized, DialogComponent, DialogProps } = model
|
|
132
|
+
|
|
133
|
+
// mirror the live device pixel ratio into the model so canvas backing stores
|
|
134
|
+
// re-scale when the window moves between monitors or the browser zooms
|
|
135
|
+
const devicePixelRatio = useDevicePixelRatio()
|
|
136
|
+
useEffect(() => {
|
|
137
|
+
model.setHighResScaleFactor(devicePixelRatio)
|
|
138
|
+
}, [model, devicePixelRatio])
|
|
139
|
+
|
|
131
140
|
return (
|
|
132
141
|
<div>
|
|
133
142
|
{viewInitialized ? (
|