react-msaview 5.0.6 → 5.0.13

package/dist/layout.js

@@ -1,74 +0,0 @@
-import Flatbush from 'flatbush';
-export default class Layout {
-    rectangles;
-    maxHeightReached = false;
-    maxHeight;
-    flatbush = null;
-    indexToId = [];
-    pTotalHeight;
-    constructor({ maxHeight = 10000, } = {}) {
-        this.rectangles = new Map();
-        this.maxHeight = Math.ceil(maxHeight);
-        this.pTotalHeight = 0; // total height, in units of bitmap squares (px/pitchY)
-    }
-    rebuildIndex() {
-        // Rebuild the spatial index with current rectangles
-        const rects = Array.from(this.rectangles.values());
-        if (rects.length === 0) {
-            this.flatbush = null;
-            this.indexToId = [];
-            return;
-        }
-        this.flatbush = new Flatbush(rects.length);
-        this.indexToId = [];
-        for (const rect of rects) {
-            this.flatbush.add(rect.minX, rect.minY, rect.maxX, rect.maxY);
-            this.indexToId.push(rect.id);
-        }
-        this.flatbush.finish();
-    }
-    collides(box) {
-        if (!this.flatbush) {
-            return false;
-        }
-        const results = this.flatbush.search(box.minX, box.minY, box.maxX, box.maxY);
-        return results.length > 0;
-    }
-    /**
-     * @returns top position for the rect, or Null if laying
-     *  out the rect would exceed maxHeighe
-     */
-    addRect(id, left, right, height, data) {
-        // add to flatbush
-        const existingRecord = this.rectangles.get(id);
-        if (existingRecord) {
-            return existingRecord.minY;
-        }
-        let currHeight = 0;
-        while (this.collides({
-            minX: left,
-            minY: currHeight,
-            maxX: right,
-            maxY: currHeight + height,
-        }) &&
-            currHeight <= this.maxHeight) {
-            currHeight += 1;
-        }
-        const record = {
-            minX: left,
-            minY: currHeight,
-            maxX: right,
-            maxY: currHeight + height,
-            id,
-            data,
-        };
-        this.rectangles.set(id, record);
-        this.rebuildIndex();
-        this.pTotalHeight = Math.max(this.pTotalHeight, currHeight);
-        return currHeight;
-    }
-    get totalHeight() {
-        return this.pTotalHeight;
-    }
-}
-//# sourceMappingURL=layout.js.map

package/dist/layout.js.map

@@ -1 +0,0 @@
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package/dist/neighborJoining.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/neighborJoining.test.js

@@ -1,110 +0,0 @@
-import { describe, expect, test } from 'vitest';
-import { calculateNeighborJoiningTree } from "./neighborJoining.js";
-describe('calculateNeighborJoiningTree', () => {
-    test('generates valid Newick tree for 2 sequences', () => {
-        const rows = [
-            ['seq1', 'MKAA'],
-            ['seq2', 'MKAA'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        expect(tree).toMatch(/;$/);
-        expect(tree).toContain('seq1');
-        expect(tree).toContain('seq2');
-    });
-    test('generates valid Newick tree for 3 sequences', () => {
-        const rows = [
-            ['human', 'MKAAYLSMFG'],
-            ['mouse', 'MKAAYLSMFG'],
-            ['chicken', 'MKAAFLSMFG'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        expect(tree).toMatch(/;$/);
-        expect(tree).toContain('human');
-        expect(tree).toContain('mouse');
-        expect(tree).toContain('chicken');
-        expect(tree).toContain('(');
-        expect(tree).toContain(')');
-    });
-    test('generates valid Newick tree for 4 sequences', () => {
-        const rows = [
-            ['A', 'MKAAYLSMFGKED'],
-            ['B', 'MKAAYLSMFGKED'],
-            ['C', 'MKAAFLSMFGKEE'],
-            ['D', 'MKAAFLSMFGKEE'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        expect(tree).toMatch(/;$/);
-        expect(tree).toContain('A');
-        expect(tree).toContain('B');
-        expect(tree).toContain('C');
-        expect(tree).toContain('D');
-    });
-    test('includes branch lengths in tree', () => {
-        const rows = [
-            ['seq1', 'MKAAYLSMFG'],
-            ['seq2', 'MKAAFLSMFG'],
-            ['seq3', 'MKBBFLSMFG'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        // Branch lengths are formatted as :0.123456
-        expect(tree).toMatch(/:\d+\.\d+/);
-    });
-    test('throws error for less than 2 sequences', () => {
-        const rows = [['seq1', 'MKAA']];
-        expect(() => calculateNeighborJoiningTree(rows)).toThrow('Need at least 2 sequences');
-    });
-    test('handles sequences with gaps', () => {
-        const rows = [
-            ['seq1', 'MK-AYLSMFG'],
-            ['seq2', 'MKAAYLSMFG'],
-            ['seq3', 'MKA-YLSMFG'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        expect(tree).toMatch(/;$/);
-        expect(tree).toContain('seq1');
-        expect(tree).toContain('seq2');
-        expect(tree).toContain('seq3');
-    });
-    test('handles special characters in sequence names', () => {
-        const rows = [
-            ['seq:1', 'MKAA'],
-            ['seq(2)', 'MKAA'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        expect(tree).toMatch(/;$/);
-        // Special characters should be escaped
-        expect(tree).not.toMatch(/seq:1/);
-        expect(tree).not.toMatch(/seq\(2\)/);
-    });
-    test('identical sequences have zero distance', () => {
-        const rows = [
-            ['seq1', 'MKAAYLSMFG'],
-            ['seq2', 'MKAAYLSMFG'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        // Identical sequences should have equal branch lengths
-        const match = tree.match(/:(\d+\.\d+)/g);
-        expect(match).not.toBeNull();
-        if (match) {
-            const lengths = match.map(m => parseFloat(m.slice(1)));
-            // Branch lengths should be small or zero for identical sequences
-            for (const len of lengths) {
-                expect(len).toBeGreaterThanOrEqual(0);
-            }
-        }
-    });
-    test('more divergent sequences have larger distances', () => {
-        const rows = [
-            ['similar1', 'MKAAYLSMFGKED'],
-            ['similar2', 'MKAAYLSMFGKED'],
-            ['different', 'WWWWWWWWWWWWW'],
-        ];
-        const tree = calculateNeighborJoiningTree(rows);
-        expect(tree).toMatch(/;$/);
-        // The tree should be valid even with very different sequences
-        expect(tree).toContain('similar1');
-        expect(tree).toContain('similar2');
-        expect(tree).toContain('different');
-    });
-});
-//# sourceMappingURL=neighborJoining.test.js.map

package/dist/neighborJoining.test.js.map

@@ -1 +0,0 @@
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package/dist/parseAsn1.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/parseAsn1.test.js

@@ -1,8 +0,0 @@
-import fs from 'fs';
-import { expect, test } from 'vitest';
-import { parseAsn1 } from "./parseAsn1.js";
-const r = fs.readFileSync(require.resolve('../test/data/tree.asn'), 'utf8');
-test('real data file', () => {
-    expect(parseAsn1(r)).toMatchSnapshot();
-});
-//# sourceMappingURL=parseAsn1.test.js.map

package/dist/parseAsn1.test.js.map

@@ -1 +0,0 @@
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package/dist/reparseTree.d.ts

@@ -1,2 +0,0 @@
-import type { NodeWithIds } from './types.ts';
-export declare function reparseTree(tree: NodeWithIds): NodeWithIds;

package/dist/reparseTree.js

@@ -1,15 +0,0 @@
-// this reparse routine helps to allow the app to hide/collapse a single
-// leafnode
-export function reparseTree(tree) {
-    return {
-        ...tree,
-        children: tree.children.map(r => r.children.length
-            ? reparseTree(r)
-            : {
-                children: [r],
-                id: `${r.id}-leafnode`,
-                name: `${r.name}-hidden`,
-            }),
-    };
-}
-//# sourceMappingURL=reparseTree.js.map

package/dist/reparseTree.js.map

@@ -1 +0,0 @@
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package/dist/rowCoordinateCalculations.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/rowCoordinateCalculations.test.js

@@ -1,224 +0,0 @@
-import { expect, test } from 'vitest';
-import { globalColToSeqPos, globalColToVisibleCol, visibleColToGlobalCol, visibleColToSeqPos, } from "./rowCoordinateCalculations.js";
-// Tests for visibleColToGlobalCol (visible → global)
-test('visibleColToGlobalCol with blanks at positions [2, 5, 8]', () => {
-    const blanks = [2, 5, 8];
-    [
-        [0, 0],
-        [1, 1],
-        [2, 3],
-        [3, 4],
-        [4, 6],
-        [5, 7],
-        [6, 9],
-        [7, 10],
-    ].forEach(r => {
-        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
-    });
-});
-test('visibleColToGlobalCol with no blanks', () => {
-    const blanks = [];
-    [
-        [0, 0],
-        [1, 1],
-        [5, 5],
-        [10, 10],
-    ].forEach(r => {
-        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
-    });
-});
-test('visibleColToGlobalCol with consecutive blanks', () => {
-    const blanks = [2, 3, 4, 7, 8];
-    [
-        [0, 0],
-        [1, 1],
-        [2, 5], // After position 1, skip 3 blanks (2,3,4)
-        [3, 6], // Next position
-        [4, 9], // After position 3, skip 2 blanks (7,8)
-        [5, 10],
-    ].forEach(r => {
-        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
-    });
-});
-test('visibleColToGlobalCol with blanks at the beginning', () => {
-    const blanks = [1, 2, 5];
-    [
-        [0, 0],
-        [1, 3], // After position 0, skip 2 blanks (1,2)
-        [2, 4],
-        [3, 6], // After position 2, skip 1 blank (5)
-        [4, 7],
-    ].forEach(r => {
-        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
-    });
-});
-test('visibleColToGlobalCol with position exceeding blanks array', () => {
-    const blanks = [2, 5];
-    [
-        [0, 0],
-        [1, 1],
-        [2, 3], // After position 1, skip 1 blank (2)
-        [3, 4],
-        [4, 6], // After position 3, skip 1 blank (5)
-        [10, 12], // Far beyond blanks array
-    ].forEach(r => {
-        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
-    });
-});
-// Tests for globalColToVisibleCol (global → visible)
-test('globalColToVisibleCol with blanks at positions [2, 5, 8]', () => {
-    const blanks = [2, 5, 8];
-    // Inverse of visibleColToGlobalCol
-    expect(globalColToVisibleCol(blanks, 0)).toBe(0);
-    expect(globalColToVisibleCol(blanks, 1)).toBe(1);
-    expect(globalColToVisibleCol(blanks, 2)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 3)).toBe(2);
-    expect(globalColToVisibleCol(blanks, 4)).toBe(3);
-    expect(globalColToVisibleCol(blanks, 5)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 6)).toBe(4);
-    expect(globalColToVisibleCol(blanks, 7)).toBe(5);
-    expect(globalColToVisibleCol(blanks, 8)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 9)).toBe(6);
-    expect(globalColToVisibleCol(blanks, 10)).toBe(7);
-});
-test('globalColToVisibleCol with no blanks', () => {
-    const blanks = [];
-    expect(globalColToVisibleCol(blanks, 0)).toBe(0);
-    expect(globalColToVisibleCol(blanks, 5)).toBe(5);
-    expect(globalColToVisibleCol(blanks, 10)).toBe(10);
-});
-test('globalColToVisibleCol with consecutive blanks', () => {
-    const blanks = [2, 3, 4, 7, 8];
-    expect(globalColToVisibleCol(blanks, 0)).toBe(0);
-    expect(globalColToVisibleCol(blanks, 1)).toBe(1);
-    expect(globalColToVisibleCol(blanks, 2)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 3)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 4)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 5)).toBe(2);
-    expect(globalColToVisibleCol(blanks, 6)).toBe(3);
-    expect(globalColToVisibleCol(blanks, 7)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 8)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 9)).toBe(4);
-    expect(globalColToVisibleCol(blanks, 10)).toBe(5);
-});
-// Tests for globalColToSeqPos (global column → sequence position)
-test('globalColToSeqPos with gaps in sequence', () => {
-    const sequence = 'AC-GT-A';
-    expect(globalColToSeqPos(sequence, 0)).toBe(0);
-    expect(globalColToSeqPos(sequence, 1)).toBe(1);
-    expect(globalColToSeqPos(sequence, 2)).toBe(2);
-    // Position 2 is a gap, so count before it is 2
-    expect(globalColToSeqPos(sequence, 3)).toBe(2);
-    expect(globalColToSeqPos(sequence, 4)).toBe(3);
-    expect(globalColToSeqPos(sequence, 5)).toBe(4);
-    // Position 5 is a gap, so count before it is 4
-    expect(globalColToSeqPos(sequence, 6)).toBe(4);
-});
-test('globalColToSeqPos with mixed gap characters (- and .)', () => {
-    const sequence = 'AC.GT-A';
-    expect(globalColToSeqPos(sequence, 0)).toBe(0);
-    expect(globalColToSeqPos(sequence, 1)).toBe(1);
-    // Position 2 is a gap (.), so count before it is 2
-    expect(globalColToSeqPos(sequence, 2)).toBe(2);
-    expect(globalColToSeqPos(sequence, 3)).toBe(2);
-    expect(globalColToSeqPos(sequence, 4)).toBe(3);
-    // Position 5 is a gap (-), so count before it is 4
-    expect(globalColToSeqPos(sequence, 5)).toBe(4);
-    expect(globalColToSeqPos(sequence, 6)).toBe(4);
-});
-test('globalColToSeqPos with no gaps in sequence', () => {
-    const sequence = 'ACGTA';
-    expect(globalColToSeqPos(sequence, 0)).toBe(0);
-    expect(globalColToSeqPos(sequence, 1)).toBe(1);
-    expect(globalColToSeqPos(sequence, 2)).toBe(2);
-    expect(globalColToSeqPos(sequence, 3)).toBe(3);
-    expect(globalColToSeqPos(sequence, 4)).toBe(4);
-});
-test('globalColToSeqPos with all gaps in sequence', () => {
-    const sequence = '-----';
-    expect(globalColToSeqPos(sequence, 0)).toBe(0);
-    expect(globalColToSeqPos(sequence, 1)).toBe(0);
-    expect(globalColToSeqPos(sequence, 2)).toBe(0);
-    expect(globalColToSeqPos(sequence, 3)).toBe(0);
-    expect(globalColToSeqPos(sequence, 4)).toBe(0);
-});
-test('globalColToSeqPos with position exceeding sequence length', () => {
-    const sequence = 'AC-GT';
-    expect(globalColToSeqPos(sequence, 10)).toBe(4);
-});
-// Tests for visibleColToSeqPos (visible column → sequence position)
-test('visibleColToSeqPos returns sequence position or undefined for gaps', () => {
-    const seq = 'AC--GT--CT';
-    expect(visibleColToSeqPos({ seq, visibleCol: 0, blanks: [] })).toBe(0);
-    expect(visibleColToSeqPos({ seq, visibleCol: 1, blanks: [] })).toBe(1);
-    expect(visibleColToSeqPos({ seq, visibleCol: 2, blanks: [] })).toBe(undefined);
-    expect(visibleColToSeqPos({ seq, visibleCol: 3, blanks: [] })).toBe(undefined);
-    expect(visibleColToSeqPos({ seq, visibleCol: 4, blanks: [] })).toBe(2);
-    expect(visibleColToSeqPos({ seq, visibleCol: 5, blanks: [] })).toBe(3);
-    expect(visibleColToSeqPos({ seq, visibleCol: 6, blanks: [] })).toBe(undefined);
-    expect(visibleColToSeqPos({ seq, visibleCol: 7, blanks: [] })).toBe(undefined);
-    expect(visibleColToSeqPos({ seq, visibleCol: 8, blanks: [] })).toBe(4);
-    expect(visibleColToSeqPos({ seq, visibleCol: 9, blanks: [] })).toBe(5);
-});
-// Round-trip tests: visible → global → visible should be identity for valid columns
-test('round-trip: visibleColToGlobalCol and globalColToVisibleCol are inverses', () => {
-    const blanks = [2, 5, 8];
-    // For each visible column, going to global and back should return the same value
-    for (let visibleCol = 0; visibleCol < 10; visibleCol++) {
-        const globalCol = visibleColToGlobalCol(blanks, visibleCol);
-        const backToVisible = globalColToVisibleCol(blanks, globalCol);
-        expect(backToVisible).toBe(visibleCol);
-    }
-});
-test('round-trip: globalColToVisibleCol and visibleColToGlobalCol for non-hidden columns', () => {
-    const blanks = [2, 5, 8];
-    // For each global column that is NOT hidden, going to visible and back should return the same value
-    for (let globalCol = 0; globalCol < 15; globalCol++) {
-        const visibleCol = globalColToVisibleCol(blanks, globalCol);
-        if (visibleCol !== undefined) {
-            const backToGlobal = visibleColToGlobalCol(blanks, visibleCol);
-            expect(backToGlobal).toBe(globalCol);
-        }
-    }
-});
-// Edge case: blanks at position 0
-test('globalColToVisibleCol with blank at position 0', () => {
-    const blanks = [0, 1, 5];
-    expect(globalColToVisibleCol(blanks, 0)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 1)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 2)).toBe(0); // First visible column
-    expect(globalColToVisibleCol(blanks, 3)).toBe(1);
-    expect(globalColToVisibleCol(blanks, 4)).toBe(2);
-    expect(globalColToVisibleCol(blanks, 5)).toBe(undefined); // Hidden
-    expect(globalColToVisibleCol(blanks, 6)).toBe(3);
-});
-test('visibleColToGlobalCol with blank at position 0', () => {
-    const blanks = [0, 1, 5];
-    expect(visibleColToGlobalCol(blanks, 0)).toBe(2); // Skips 0, 1
-    expect(visibleColToGlobalCol(blanks, 1)).toBe(3);
-    expect(visibleColToGlobalCol(blanks, 2)).toBe(4);
-    expect(visibleColToGlobalCol(blanks, 3)).toBe(6); // Skips 5
-});
-// Edge case: all columns before a position are blanks
-test('globalColToVisibleCol with many leading blanks', () => {
-    const blanks = [0, 1, 2, 3, 4];
-    expect(globalColToVisibleCol(blanks, 0)).toBe(undefined);
-    expect(globalColToVisibleCol(blanks, 4)).toBe(undefined);
-    expect(globalColToVisibleCol(blanks, 5)).toBe(0); // First visible
-    expect(globalColToVisibleCol(blanks, 6)).toBe(1);
-    expect(globalColToVisibleCol(blanks, 10)).toBe(5);
-});
-// Test visibleColToSeqPos with blanks (combined gap hiding and row gaps)
-test('visibleColToSeqPos with both blanks and row gaps', () => {
-    // Sequence: A-C-G (global cols 0,1,2,3,4)
-    // If blanks = [1, 3], visible sequence becomes: A C G (visible cols 0,1,2)
-    const seq = 'A-C-G';
-    const blanks = [1, 3];
-    // Visible col 0 → global col 0 → 'A' → seqPos 0
-    expect(visibleColToSeqPos({ seq, visibleCol: 0, blanks })).toBe(0);
-    // Visible col 1 → global col 2 → 'C' → seqPos 1
-    expect(visibleColToSeqPos({ seq, visibleCol: 1, blanks })).toBe(1);
-    // Visible col 2 → global col 4 → 'G' → seqPos 2
-    expect(visibleColToSeqPos({ seq, visibleCol: 2, blanks })).toBe(2);
-});
-//# sourceMappingURL=rowCoordinateCalculations.test.js.map

package/dist/rowCoordinateCalculations.test.js.map

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package/dist/seqPosToGlobalCol.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/seqPosToGlobalCol.test.js

@@ -1,60 +0,0 @@
-import { describe, expect, test } from 'vitest';
-import { seqPosToGlobalCol } from "./seqPosToGlobalCol.js";
-describe('seqPosToGlobalCol', () => {
-    test('converts sequence position to global column with no gaps', () => {
-        const row = 'ATGCATGC';
-        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0);
-        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(3);
-        expect(seqPosToGlobalCol({ row, seqPos: 7 })).toBe(7);
-        expect(seqPosToGlobalCol({ row, seqPos: 8 })).toBe(8); // Past end
-    });
-    test('converts sequence position to global column with gaps', () => {
-        const row = 'A-TG-CA-TGC';
-        // Global: A(0) -(1) T(2) G(3) -(4) C(5) A(6) -(7) T(8) G(9) C(10)
-        // SeqPos: A(0)      T(1) G(2)      C(3) A(4)      T(5) G(6) C(7)
-        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0); // A
-        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(2); // T
-        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(3); // G
-        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(5); // C
-        expect(seqPosToGlobalCol({ row, seqPos: 4 })).toBe(6); // A
-        expect(seqPosToGlobalCol({ row, seqPos: 5 })).toBe(8); // T
-        expect(seqPosToGlobalCol({ row, seqPos: 6 })).toBe(9); // G
-        expect(seqPosToGlobalCol({ row, seqPos: 7 })).toBe(10); // C
-        expect(seqPosToGlobalCol({ row, seqPos: 8 })).toBe(11); // Past end
-    });
-    test('handles empty row', () => {
-        expect(seqPosToGlobalCol({ row: '', seqPos: 0 })).toBe(0);
-    });
-    test('handles row with only gaps', () => {
-        const row = '---..--';
-        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0);
-        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(7); // Past end
-    });
-    test('handles mixed gap characters (- and .)', () => {
-        const row = 'A-.G-C.';
-        // Global: A(0) -(1) .(2) G(3) -(4) C(5) .(6)
-        // SeqPos: A(0)           G(1)      C(2)
-        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0); // A
-        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(3); // G
-        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(5); // C
-        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(7); // Past end
-    });
-    test('handles leading gaps', () => {
-        const row = '--ACG';
-        // Global: -(0) -(1) A(2) C(3) G(4)
-        // SeqPos:           A(0) C(1) G(2)
-        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(2); // A
-        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(3); // C
-        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(4); // G
-    });
-    test('handles trailing gaps', () => {
-        const row = 'ACG--';
-        // Global: A(0) C(1) G(2) -(3) -(4)
-        // SeqPos: A(0) C(1) G(2)
-        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0); // A
-        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(1); // C
-        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(2); // G
-        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(5); // Past end
-    });
-});
-//# sourceMappingURL=seqPosToGlobalCol.test.js.map

package/dist/seqPosToGlobalCol.test.js.map

@@ -1 +0,0 @@
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