react-msaview 5.0.6 → 5.0.13

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (190) hide show
  1. package/bundle/index.js +106 -106
  2. package/bundle/index.js.LICENSE.txt +1 -1
  3. package/bundle/index.js.map +1 -1
  4. package/dist/components/Checkbox2.js +3 -6
  5. package/dist/components/Checkbox2.js.map +1 -1
  6. package/dist/components/MSAViewer.d.ts +14 -0
  7. package/dist/components/MSAViewer.js +34 -0
  8. package/dist/components/MSAViewer.js.map +1 -0
  9. package/dist/components/Track.d.ts +0 -4
  10. package/dist/components/Track.js +6 -26
  11. package/dist/components/Track.js.map +1 -1
  12. package/dist/components/dialogs/DomainDialog.js +2 -5
  13. package/dist/components/dialogs/DomainDialog.js.map +1 -1
  14. package/dist/components/dialogs/InterProScanDialog.js +7 -7
  15. package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
  16. package/dist/components/dialogs/SettingsDialog.js +3 -19
  17. package/dist/components/dialogs/SettingsDialog.js.map +1 -1
  18. package/dist/components/header/ColorSchemeMenu.d.ts +6 -0
  19. package/dist/components/header/ColorSchemeMenu.js +19 -0
  20. package/dist/components/header/ColorSchemeMenu.js.map +1 -0
  21. package/dist/components/header/{ZoomStar.d.ts → FileMenu.d.ts} +2 -2
  22. package/dist/components/header/FileMenu.js +71 -0
  23. package/dist/components/header/FileMenu.js.map +1 -0
  24. package/dist/components/header/Header.js +8 -6
  25. package/dist/components/header/Header.js.map +1 -1
  26. package/dist/components/header/HeaderMenu.js +3 -145
  27. package/dist/components/header/HeaderMenu.js.map +1 -1
  28. package/dist/components/header/MSASettingsMenu.d.ts +6 -0
  29. package/dist/components/header/MSASettingsMenu.js +36 -0
  30. package/dist/components/header/MSASettingsMenu.js.map +1 -0
  31. package/dist/components/header/SettingsMenu.js +1 -21
  32. package/dist/components/header/SettingsMenu.js.map +1 -1
  33. package/dist/components/header/TreeSettingsMenu.d.ts +6 -0
  34. package/dist/components/header/TreeSettingsMenu.js +74 -0
  35. package/dist/components/header/TreeSettingsMenu.js.map +1 -0
  36. package/dist/components/header/ZoomMenu.js +0 -8
  37. package/dist/components/header/ZoomMenu.js.map +1 -1
  38. package/dist/components/header/getDomainsMenu.d.ts +31 -0
  39. package/dist/components/header/getDomainsMenu.js +75 -0
  40. package/dist/components/header/getDomainsMenu.js.map +1 -0
  41. package/dist/components/import/ImportFormExamples.js +21 -19
  42. package/dist/components/import/ImportFormExamples.js.map +1 -1
  43. package/dist/components/msa/MSACanvas.js +13 -89
  44. package/dist/components/msa/MSACanvas.js.map +1 -1
  45. package/dist/components/msa/MSACanvasBlock.js +1 -3
  46. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  47. package/dist/components/msa/renderMSABlock.js +2 -4
  48. package/dist/components/msa/renderMSABlock.js.map +1 -1
  49. package/dist/components/msa/renderMSAMouseover.js +1 -7
  50. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  51. package/dist/components/tree/TreeCanvas.js +18 -101
  52. package/dist/components/tree/TreeCanvas.js.map +1 -1
  53. package/dist/components/tree/TreeCanvasBlock.js +33 -1
  54. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  55. package/dist/components/tree/TreeNodeMenu.js +5 -16
  56. package/dist/components/tree/TreeNodeMenu.js.map +1 -1
  57. package/dist/components/tree/renderTreeCanvas.js +4 -12
  58. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  59. package/dist/constants.d.ts +0 -2
  60. package/dist/constants.js +0 -2
  61. package/dist/constants.js.map +1 -1
  62. package/dist/fetchUtils.d.ts +0 -1
  63. package/dist/fetchUtils.js +0 -4
  64. package/dist/fetchUtils.js.map +1 -1
  65. package/dist/flatToTree.d.ts +0 -5
  66. package/dist/flatToTree.js +13 -30
  67. package/dist/flatToTree.js.map +1 -1
  68. package/dist/hierarchy.d.ts +28 -0
  69. package/dist/hierarchy.js +164 -0
  70. package/dist/hierarchy.js.map +1 -0
  71. package/dist/index.d.ts +2 -0
  72. package/dist/index.js +1 -0
  73. package/dist/index.js.map +1 -1
  74. package/dist/launchInterProScan.d.ts +0 -5
  75. package/dist/launchInterProScan.js +5 -3
  76. package/dist/launchInterProScan.js.map +1 -1
  77. package/dist/model/DataModel.d.ts +9 -0
  78. package/dist/model/DataModel.js +12 -1
  79. package/dist/model/DataModel.js.map +1 -1
  80. package/dist/model/msaModel.d.ts +3 -0
  81. package/dist/model/msaModel.js +0 -1
  82. package/dist/model/msaModel.js.map +1 -1
  83. package/dist/model/treeModel.d.ts +3 -6
  84. package/dist/model/treeModel.js +3 -15
  85. package/dist/model/treeModel.js.map +1 -1
  86. package/dist/model.d.ts +34 -77
  87. package/dist/model.js +140 -239
  88. package/dist/model.js.map +1 -1
  89. package/dist/neighborJoining.js +40 -633
  90. package/dist/neighborJoining.js.map +1 -1
  91. package/dist/parseAsn1.d.ts +0 -12
  92. package/dist/parseAsn1.js +125 -332
  93. package/dist/parseAsn1.js.map +1 -1
  94. package/dist/useWheelScroll.d.ts +8 -0
  95. package/dist/useWheelScroll.js +93 -0
  96. package/dist/useWheelScroll.js.map +1 -0
  97. package/dist/util.d.ts +1 -6
  98. package/dist/util.js +5 -34
  99. package/dist/util.js.map +1 -1
  100. package/dist/vendor/copyToClipboard.d.ts +1 -10
  101. package/dist/vendor/copyToClipboard.js +14 -109
  102. package/dist/vendor/copyToClipboard.js.map +1 -1
  103. package/dist/vendor/fileSaver.d.ts +1 -11
  104. package/dist/vendor/fileSaver.js +7 -76
  105. package/dist/vendor/fileSaver.js.map +1 -1
  106. package/dist/version.d.ts +1 -1
  107. package/dist/version.js +1 -1
  108. package/dist/version.js.map +1 -1
  109. package/package.json +14 -14
  110. package/src/collapseLogic.test.ts +115 -0
  111. package/src/components/Checkbox2.tsx +9 -18
  112. package/src/components/MSAViewer.tsx +67 -0
  113. package/src/components/Track.tsx +11 -30
  114. package/src/components/dialogs/DomainDialog.tsx +4 -5
  115. package/src/components/dialogs/InterProScanDialog.tsx +7 -7
  116. package/src/components/dialogs/SettingsDialog.tsx +0 -37
  117. package/src/components/header/ColorSchemeMenu.tsx +35 -0
  118. package/src/components/header/FileMenu.tsx +84 -0
  119. package/src/components/header/Header.tsx +8 -6
  120. package/src/components/header/HeaderMenu.tsx +4 -155
  121. package/src/components/header/MSASettingsMenu.tsx +48 -0
  122. package/src/components/header/SettingsMenu.tsx +0 -23
  123. package/src/components/header/TreeSettingsMenu.tsx +96 -0
  124. package/src/components/header/ZoomMenu.tsx +0 -8
  125. package/src/components/header/getDomainsMenu.ts +83 -0
  126. package/src/components/import/ImportFormExamples.tsx +37 -34
  127. package/src/components/msa/MSACanvas.tsx +21 -97
  128. package/src/components/msa/MSACanvasBlock.tsx +1 -3
  129. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +1 -1
  130. package/src/components/msa/renderMSABlock.ts +2 -5
  131. package/src/components/msa/renderMSAMouseover.ts +0 -6
  132. package/src/components/tree/TreeCanvas.tsx +48 -111
  133. package/src/components/tree/TreeCanvasBlock.tsx +44 -0
  134. package/src/components/tree/TreeNodeMenu.tsx +5 -14
  135. package/src/components/tree/renderTreeCanvas.ts +8 -21
  136. package/src/constants.ts +0 -2
  137. package/src/fetchUtils.ts +0 -5
  138. package/src/flatToTree.ts +20 -38
  139. package/src/hierarchy.test.ts +120 -0
  140. package/src/hierarchy.ts +220 -0
  141. package/src/index.ts +2 -0
  142. package/src/launchInterProScan.ts +4 -3
  143. package/src/model/DataModel.ts +12 -1
  144. package/src/model/msaModel.ts +0 -2
  145. package/src/model/treeModel.ts +2 -18
  146. package/src/model.ts +203 -278
  147. package/src/neighborJoining.test.ts +15 -7
  148. package/src/neighborJoining.ts +40 -632
  149. package/src/parseAsn1.test.ts +5 -2
  150. package/src/parseAsn1.ts +135 -405
  151. package/src/useWheelScroll.ts +109 -0
  152. package/src/util.ts +5 -50
  153. package/src/vendor/copyToClipboard.ts +14 -122
  154. package/src/vendor/fileSaver.ts +8 -105
  155. package/src/version.ts +1 -1
  156. package/dist/components/dialogs/AddTrackDialog.d.ts +0 -8
  157. package/dist/components/dialogs/AddTrackDialog.js +0 -30
  158. package/dist/components/dialogs/AddTrackDialog.js.map +0 -1
  159. package/dist/components/dialogs/TabPanel.d.ts +0 -6
  160. package/dist/components/dialogs/TabPanel.js +0 -6
  161. package/dist/components/dialogs/TabPanel.js.map +0 -1
  162. package/dist/components/header/ZoomStar.js +0 -40
  163. package/dist/components/header/ZoomStar.js.map +0 -1
  164. package/dist/createPaletteMap.test.d.ts +0 -1
  165. package/dist/createPaletteMap.test.js +0 -49
  166. package/dist/createPaletteMap.test.js.map +0 -1
  167. package/dist/layout.d.ts +0 -26
  168. package/dist/layout.js +0 -74
  169. package/dist/layout.js.map +0 -1
  170. package/dist/neighborJoining.test.d.ts +0 -1
  171. package/dist/neighborJoining.test.js +0 -110
  172. package/dist/neighborJoining.test.js.map +0 -1
  173. package/dist/parseAsn1.test.d.ts +0 -1
  174. package/dist/parseAsn1.test.js +0 -8
  175. package/dist/parseAsn1.test.js.map +0 -1
  176. package/dist/reparseTree.d.ts +0 -2
  177. package/dist/reparseTree.js +0 -15
  178. package/dist/reparseTree.js.map +0 -1
  179. package/dist/rowCoordinateCalculations.test.d.ts +0 -1
  180. package/dist/rowCoordinateCalculations.test.js +0 -224
  181. package/dist/rowCoordinateCalculations.test.js.map +0 -1
  182. package/dist/seqPosToGlobalCol.test.d.ts +0 -1
  183. package/dist/seqPosToGlobalCol.test.js +0 -60
  184. package/dist/seqPosToGlobalCol.test.js.map +0 -1
  185. package/src/components/dialogs/AddTrackDialog.tsx +0 -85
  186. package/src/components/dialogs/TabPanel.tsx +0 -19
  187. package/src/components/header/ZoomStar.tsx +0 -74
  188. package/src/createPaletteMap.test.ts +0 -57
  189. package/src/layout.ts +0 -118
  190. package/src/reparseTree.ts +0 -18

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