npm - react-msaview - Versions diffs - 3.1.11 → 3.2.0 - Mend

react-msaview 3.1.11 → 3.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (191) hide show

package/bundle/index.js +32 -31
package/dist/colorSchemes.d.ts +2 -2
package/dist/colorSchemes.js +3 -4
package/dist/colorSchemes.js.map +1 -1
package/dist/components/Loading.d.ts +1 -1
package/dist/components/Loading.js +4 -4
package/dist/components/Loading.js.map +1 -1
package/dist/components/MSAView.d.ts +1 -1
package/dist/components/MSAView.js +13 -9
package/dist/components/MSAView.js.map +1 -1
package/dist/components/ResizeHandles.d.ts +1 -1
package/dist/components/ResizeHandles.js +2 -2
package/dist/components/SequenceTextArea.js +4 -0
package/dist/components/SequenceTextArea.js.map +1 -1
package/dist/components/TextTrack.d.ts +1 -1
package/dist/components/Track.d.ts +1 -1
package/dist/components/VerticalScrollbar.d.ts +6 -0
package/dist/components/VerticalScrollbar.js +65 -0
package/dist/components/VerticalScrollbar.js.map +1 -0
package/dist/components/dialogs/AddTrackDialog.d.ts +1 -1
package/dist/components/dialogs/DomainDialog.d.ts +6 -0
package/dist/components/dialogs/DomainDialog.js +19 -0
package/dist/components/dialogs/DomainDialog.js.map +1 -0
package/dist/components/dialogs/ExportSVGDialog.d.ts +1 -1
package/dist/components/dialogs/FeatureDialog.d.ts +1 -1
package/dist/components/dialogs/FeatureDialog.js.map +1 -1
package/dist/components/dialogs/InterProScanDialog.d.ts +4 -4
package/dist/components/dialogs/InterProScanDialog.js +37 -8
package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
package/dist/components/dialogs/MetadataDialog.d.ts +1 -1
package/dist/components/dialogs/SettingsDialog.d.ts +1 -1
package/dist/components/dialogs/SettingsDialog.js +10 -1
package/dist/components/dialogs/SettingsDialog.js.map +1 -1
package/dist/components/dialogs/TabPanel.d.ts +6 -0
package/dist/components/dialogs/TabPanel.js +6 -0
package/dist/components/dialogs/TabPanel.js.map +1 -0
package/dist/components/dialogs/TracklistDialog.d.ts +1 -1
package/dist/components/dialogs/UserProvidedDomainsDialog.d.ts +7 -0
package/dist/components/dialogs/UserProvidedDomainsDialog.js +58 -0
package/dist/components/dialogs/UserProvidedDomainsDialog.js.map +1 -0
package/dist/components/header/Header.d.ts +1 -1
package/dist/components/header/Header.js +8 -5
package/dist/components/header/Header.js.map +1 -1
package/dist/components/header/HeaderInfoArea.d.ts +1 -1
package/dist/components/header/HeaderMenu.d.ts +1 -1
package/dist/components/header/HeaderMenuExtra.d.ts +1 -1
package/dist/components/header/HeaderMenuExtra.js +54 -41
package/dist/components/header/HeaderMenuExtra.js.map +1 -1
package/dist/components/header/HeaderStatusArea.d.ts +1 -1
package/dist/components/header/HeaderStatusArea.js +2 -1
package/dist/components/header/HeaderStatusArea.js.map +1 -1
package/dist/components/header/MultiAlignmentSelector.d.ts +1 -1
package/dist/components/header/ZoomControls.js +31 -1
package/dist/components/header/ZoomControls.js.map +1 -1
package/dist/components/import/ImportForm.d.ts +1 -1
package/dist/components/import/ImportForm.js +1 -1
package/dist/components/import/ImportForm.js.map +1 -1
package/dist/components/import/ImportFormExamples.d.ts +1 -1
package/dist/components/import/ImportFormExamples.js +10 -8
package/dist/components/import/ImportFormExamples.js.map +1 -1
package/dist/components/import/util.d.ts +2 -2
package/dist/components/minimap/Minimap.d.ts +1 -1
package/dist/components/minimap/Minimap.js +14 -15
package/dist/components/minimap/Minimap.js.map +1 -1
package/dist/components/minimap/MinimapSVG.d.ts +1 -1
package/dist/components/minimap/MinimapSVG.js +1 -1
package/dist/components/minimap/MinimapSVG.js.map +1 -1
package/dist/components/msa/MSACanvas.d.ts +1 -1
package/dist/components/msa/MSACanvas.js +3 -3
package/dist/components/msa/MSACanvas.js.map +1 -1
package/dist/components/msa/MSACanvasBlock.d.ts +3 -3
package/dist/components/msa/MSACanvasBlock.js +4 -3
package/dist/components/msa/MSACanvasBlock.js.map +1 -1
package/dist/components/msa/MSAMouseoverCanvas.d.ts +2 -2
package/dist/components/msa/MSAMouseoverCanvas.js +1 -1
package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
package/dist/components/msa/MSAPanel.d.ts +1 -1
package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +1 -1
package/dist/components/msa/renderBoxFeatureCanvasBlock.js +2 -3
package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
package/dist/components/msa/renderMSABlock.d.ts +2 -2
package/dist/components/msa/renderMSABlock.js +12 -12
package/dist/components/msa/renderMSABlock.js.map +1 -1
package/dist/components/msa/renderMSAMouseover.d.ts +1 -1
package/dist/components/tree/TreeBranchMenu.d.ts +1 -1
package/dist/components/tree/TreeCanvas.d.ts +1 -1
package/dist/components/tree/TreeCanvas.js +13 -12
package/dist/components/tree/TreeCanvas.js.map +1 -1
package/dist/components/tree/TreeCanvasBlock.d.ts +1 -1
package/dist/components/tree/TreeCanvasBlock.js +2 -1
package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
package/dist/components/tree/TreeNodeMenu.d.ts +1 -1
package/dist/components/tree/TreeNodeMenu.js +2 -2
package/dist/components/tree/TreeNodeMenu.js.map +1 -1
package/dist/components/tree/TreePanel.d.ts +1 -1
package/dist/components/tree/TreeRuler.d.ts +1 -1
package/dist/components/tree/dialogs/TreeNodeInfoDialog.d.ts +1 -1
package/dist/components/tree/renderTreeCanvas.d.ts +3 -3
package/dist/components/tree/renderTreeCanvas.js +25 -9
package/dist/components/tree/renderTreeCanvas.js.map +1 -1
package/dist/components/util.js +1 -1
package/dist/components/util.js.map +1 -1
package/dist/fetchUtils.d.ts +1 -1
package/dist/fetchUtils.js.map +1 -1
package/dist/launchInterProScan.d.ts +9 -3
package/dist/launchInterProScan.js +57 -22
package/dist/launchInterProScan.js.map +1 -1
package/dist/model/DataModel.d.ts +5 -1
package/dist/model/DataModel.js +10 -1
package/dist/model/DataModel.js.map +1 -1
package/dist/model/DialogQueue.d.ts +1 -1
package/dist/model.d.ts +138 -43
package/dist/model.js +235 -110
package/dist/model.js.map +1 -1
package/dist/parseNewick.js +1 -1
package/dist/parseNewick.js.map +1 -1
package/dist/parsers/ClustalMSA.d.ts +1 -1
package/dist/parsers/FastaMSA.d.ts +1 -1
package/dist/parsers/StockholmMSA.d.ts +1 -1
package/dist/parsers/StockholmMSA.js.map +1 -1
package/dist/renderToSvg.d.ts +2 -2
package/dist/renderToSvg.js +3 -28
package/dist/renderToSvg.js.map +1 -1
package/dist/reparseTree.d.ts +1 -1
package/dist/util.d.ts +2 -2
package/dist/util.js +0 -2
package/dist/util.js.map +1 -1
package/dist/version.d.ts +1 -1
package/dist/version.js +1 -1
package/dist/version.js.map +1 -1
package/package.json +5 -2
package/src/colorSchemes.ts +3 -2
package/src/components/Checkbox2.tsx +1 -1
package/src/components/Loading.tsx +11 -5
package/src/components/MSAView.tsx +27 -18
package/src/components/ResizeHandles.tsx +3 -3
package/src/components/SequenceTextArea.tsx +8 -0
package/src/components/TextTrack.tsx +1 -1
package/src/components/Track.tsx +1 -1
package/src/components/VerticalScrollbar.tsx +85 -0
package/src/components/dialogs/AddTrackDialog.tsx +2 -2
package/src/components/dialogs/DomainDialog.tsx +38 -0
package/src/components/dialogs/ExportSVGDialog.tsx +1 -1
package/src/components/dialogs/FeatureDialog.tsx +3 -3
package/src/components/dialogs/InterProScanDialog.tsx +49 -11
package/src/components/dialogs/MetadataDialog.tsx +1 -1
package/src/components/dialogs/SettingsDialog.tsx +38 -3
package/src/components/dialogs/TabPanel.tsx +19 -0
package/src/components/dialogs/TracklistDialog.tsx +1 -1
package/src/components/dialogs/UserProvidedDomainsDialog.tsx +133 -0
package/src/components/header/Header.tsx +9 -6
package/src/components/header/HeaderInfoArea.tsx +1 -1
package/src/components/header/HeaderMenu.tsx +1 -1
package/src/components/header/HeaderMenuExtra.tsx +65 -48
package/src/components/header/HeaderStatusArea.tsx +3 -2
package/src/components/header/MultiAlignmentSelector.tsx +1 -1
package/src/components/header/ZoomControls.tsx +34 -0
package/src/components/import/ImportForm.tsx +3 -3
package/src/components/import/ImportFormExamples.tsx +19 -17
package/src/components/import/util.ts +2 -2
package/src/components/minimap/Minimap.tsx +15 -22
package/src/components/minimap/MinimapSVG.tsx +2 -2
package/src/components/msa/MSACanvas.tsx +11 -4
package/src/components/msa/MSACanvasBlock.tsx +5 -4
package/src/components/msa/MSAMouseoverCanvas.tsx +2 -6
package/src/components/msa/MSAPanel.tsx +1 -1
package/src/components/msa/renderBoxFeatureCanvasBlock.ts +5 -6
package/src/components/msa/renderMSABlock.ts +37 -17
package/src/components/msa/renderMSAMouseover.ts +1 -1
package/src/components/tree/TreeBranchMenu.tsx +1 -1
package/src/components/tree/TreeCanvas.tsx +15 -16
package/src/components/tree/TreeCanvasBlock.tsx +3 -2
package/src/components/tree/TreeNodeMenu.tsx +3 -3
package/src/components/tree/TreePanel.tsx +1 -1
package/src/components/tree/TreeRuler.tsx +1 -1
package/src/components/tree/dialogs/TreeNodeInfoDialog.tsx +1 -1
package/src/components/tree/renderTreeCanvas.ts +32 -12
package/src/components/util.ts +1 -1
package/src/fetchUtils.ts +2 -2
package/src/launchInterProScan.ts +69 -24
package/src/model/DataModel.ts +10 -0
package/src/model/DialogQueue.ts +1 -1
package/src/model.ts +262 -143
package/src/parseNewick.ts +1 -1
package/src/parsers/ClustalMSA.ts +1 -1
package/src/parsers/FastaMSA.ts +1 -1
package/src/parsers/StockholmMSA.ts +1 -1
package/src/renderToSvg.tsx +6 -30
package/src/reparseTree.ts +1 -1
package/src/util.ts +2 -4
package/src/version.ts +1 -1

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package/dist/parseNewick.js CHANGED Viewed

@@ -86,7 +86,7 @@ export default function parse(s) {
                     tree.name = token;
                 }
                 else if (x === ':') {
-                    tree.length = parseFloat(token);
+                    tree.length = Number.parseFloat(token);
                 }
             }
         }

package/dist/parseNewick.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/parsers/ClustalMSA.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-import { NodeWithIds } from '../util';
+import type { NodeWithIds } from '../util';
 export default class ClustalMSA {
     private MSA;
     constructor(text: string);

package/dist/parsers/FastaMSA.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-import { NodeWithIds } from '../util';
+import type { NodeWithIds } from '../util';
 export default class FastaMSA {
     private MSA;
     constructor(text: string);

package/dist/parsers/StockholmMSA.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-import { NodeWithIds } from '../util';
+import { type NodeWithIds } from '../util';
 interface StockholmEntry {
     gf: {
         DE?: string[];

package/dist/parsers/StockholmMSA.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/renderToSvg.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
-import { Theme } from '@mui/material';
-import { MsaViewModel } from './model';
+import type { Theme } from '@mui/material';
+import type { MsaViewModel } from './model';
 export declare function renderToSvg(model: MsaViewModel, opts: {
     theme: Theme;
     includeMinimap?: boolean;

package/dist/renderToSvg.js CHANGED Viewed

@@ -8,7 +8,7 @@ import { colorContrast } from './util';
 import MinimapSVG from './components/minimap/MinimapSVG';
 import { renderBoxFeatureCanvasBlock } from './components/msa/renderBoxFeatureCanvasBlock';
 export async function renderToSvg(model, opts) {
-    await when(() => !!model.initialized);
+    await when(() => !!model.dataInitialized);
     const { width, height, scrollX, scrollY } = model;
     const { exportType, theme, includeMinimap } = opts;
     if (exportType === 'entire') {
@@ -22,7 +22,7 @@ export async function renderToSvg(model, opts) {
             includeMinimap,
         });
     }
-    else if (exportType === 'viewport') {
+    if (exportType === 'viewport') {
         return render({
             width,
             height,
@@ -33,9 +33,7 @@ export async function renderToSvg(model, opts) {
             includeMinimap,
         });
     }
-    else {
-        throw new Error('unknown export type');
-    }
+    throw new Error('unknown export type');
 }
 async function render({ width, height, offsetX, offsetY, theme, model, includeMinimap, }) {
     const { Context } = await import('svgcanvas');
@@ -44,29 +42,6 @@ async function render({ width, height, offsetX, offsetY, theme, model, includeMi
         React.createElement(Wrapper, { model: model },
             React.createElement(CoreRendering, { Context: Context, model: model, theme: theme, offsetX: offsetX, offsetY: offsetY, width: width, height: height }))), createRoot);
 }
-// function renderMultiline({ model }: { model: MsaViewModel }) {
-//   const { treeAreaWidth, height } = model
-//   const clipId = 'tree'
-//   return (
-//     <Wrapper model={model}>
-//       <defs>
-//         <clipPath id={clipId}>
-//           <rect x={0} y={0} width={treeAreaWidth} height={height} />
-//         </clipPath>
-//       </defs>
-//       <g
-//         clipPath={`url(#${clipId})`}
-//         /* eslint-disable-next-line react/no-danger */
-//         dangerouslySetInnerHTML={{ __html: ctx1.getSvg().innerHTML }}
-//       />
-//       <g
-//         transform={`translate(${treeAreaWidth} 0)`}
-//         /* eslint-disable-next-line react/no-danger */
-//         dangerouslySetInnerHTML={{ __html: ctx2.getSvg().innerHTML }}
-//       />
-//     </Wrapper>
-//   )
-// }
 function CoreRendering({ model, theme, width, height, offsetX, offsetY, Context, }) {
     const clipId1 = 'tree';
     const clipId2 = 'msa';

package/dist/renderToSvg.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/reparseTree.d.ts CHANGED Viewed

@@ -1,2 +1,2 @@
-import { NodeWithIds } from './util';
+import type { NodeWithIds } from './util';
 export declare function reparseTree(tree: NodeWithIds): NodeWithIds;

package/dist/util.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
-import { HierarchyNode } from 'd3-hierarchy';
-import { Theme } from '@mui/material';
+import type { HierarchyNode } from 'd3-hierarchy';
+import type { Theme } from '@mui/material';
 export declare function transform<T>(obj: Record<string, T>, cb: (arg0: [string, T]) => [string, T]): {
     [k: string]: T;
 };

package/dist/util.js CHANGED Viewed

@@ -54,8 +54,6 @@ export function collapse(d) {
         // @ts-expect-error
         d._children = d.children;
         // @ts-expect-error
-        d._children.forEach(collapse);
-        // @ts-expect-error
         d.children = null;
     }
 }

package/dist/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/version.d.ts CHANGED Viewed

	@@ -1 +1 @@
1	- export declare const version = "3.1.11";
1	+ export declare const version = "3.2.0";

package/dist/version.js CHANGED Viewed

@@ -1,2 +1,2 @@
-export const version = '3.1.11';
+export const version = '3.2.0';
 //# sourceMappingURL=version.js.map

package/dist/version.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"version.js","sourceRoot":"","sources":["../src/version.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,OAAO,GAAG,~~QAAQ~~,CAAA"}
1	+ {"version":3,"file":"version.js","sourceRoot":"","sources":["../src/version.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,OAAO,GAAG,OAAO,CAAA"}

package/package.json CHANGED Viewed

@@ -1,7 +1,7 @@
 {
   "name": "react-msaview",
   "author": "Colin",
-  "version": "3.1.11",
+  "version": "3.2.0",
   "license": "MIT",
   "main": "dist/index.js",
   "module": "dist/index.js",
@@ -15,6 +15,7 @@
   },
   "scripts": {
     "clean": "rimraf dist",
+    "format": "prettier --write .",
     "prebuild": "npm run clean",
     "prepublishOnly": "node output-version.js > src/version.ts && git add -A src && git commit -m '[skip ci] Bump version.ts'",
     "build:esm": "tsc",
@@ -23,7 +24,8 @@
     "prepack": "npm run build",
     "postversion": "git push --follow-tags",
     "prestatedocs": "yarn tsc --build docgen/tsconfig.json",
-    "statedocs": "rm -rf apidocs && mkdir apidocs && node docgen/dist/generateStateModelDocs.js"
+    "statedocs": "rm -rf apidocs && mkdir apidocs && node docgen/dist/generateStateModelDocs.js",
+    "poststatedocs": "npm run format"
   },
   "peerDependencies": {
     "@jbrowse/core": ">=2.0.0",
@@ -42,6 +44,7 @@
     "d3-array": "^3.2.3",
     "d3-hierarchy": "^3.1.2",
     "file-saver": "^2.0.5",
+    "pako": "^2.1.0",
     "rbush": "^3.0.1",
     "react-error-boundary": "^4.0.13",
     "stockholm-js": "^1.0.10",

package/src/colorSchemes.ts CHANGED Viewed

@@ -5,6 +5,7 @@ import { transform } from './util'
 extend([namesPlugin])
 const colorSchemes = {
+  none: {},
   clustal: {
     G: 'orange',
     P: 'orange',
@@ -351,11 +352,11 @@ export default transform(colorSchemes, ([key, val]) => [
 // should be WLVIMAFCHPY, colprot.xml says e.g. %#ACFHILMVWYPp" which has Y
 export function getClustalXColor(
   stats: Record<string, number>,
+  total: number,
   model: { columns: Record<string, string> },
   row: string,
   col: number,
 ) {
-  const total = Object.values(stats).reduce((a, b) => a + b, 0)
   const l = model.columns[row][col]
   const {
     W = 0,
@@ -498,11 +499,11 @@ export function getClustalXColor(
 // should be WLVIMAFCHPY, colprot.xml says e.g. %#ACFHILMVWYPp" which has Y
 export function getPercentIdentityColor(
   stats: Record<string, number>,
+  total: number,
   model: { columns: Record<string, string> },
   row: string,
   col: number,
 ) {
-  const total = Object.values(stats).reduce((a, b) => a + b, 0)
   const l = model.columns[row][col]
   const entries = Object.entries(stats)
   let ent = 0

package/src/components/Checkbox2.tsx CHANGED Viewed

@@ -2,7 +2,7 @@ import React from 'react'
 import {
   Checkbox,
   FormControlLabel,
-  FormControlLabelProps,
+  type FormControlLabelProps,
 } from '@mui/material'
 function FormControlLabel2(rest: FormControlLabelProps) {

package/src/components/Loading.tsx CHANGED Viewed

@@ -7,9 +7,15 @@ import { ErrorMessage } from '@jbrowse/core/ui'
 // locals
 import ImportForm from './import/ImportForm'
 import MSAView from './MSAView'
-import { MsaViewModel } from '../model'
+import type { MsaViewModel } from '../model'
-function Reset({ model, error }: { model: MsaViewModel; error: unknown }) {
+const Reset = observer(function ({
+  model,
+  error,
+}: {
+  model: MsaViewModel
+  error: unknown
+}) {
   return (
     <div>
       <ErrorMessage error={error} />
@@ -18,17 +24,17 @@ function Reset({ model, error }: { model: MsaViewModel; error: unknown }) {
       </Button>
     </div>
   )
-}
+})
 const Loading = observer(function ({ model }: { model: MsaViewModel }) {
-  const { isLoading, initialized } = model
+  const { isLoading, dataInitialized } = model
   return (
     <div>
       <ErrorBoundary
         fallbackRender={props => <Reset model={model} error={props.error} />}
       >
-        {initialized ? (
+        {dataInitialized ? (
           isLoading ? (
             <Typography variant="h4">Loading...</Typography>
           ) : (

package/src/components/MSAView.tsx CHANGED Viewed

@@ -3,55 +3,64 @@ import { observer } from 'mobx-react'
 // locals
 import { HorizontalResizeHandle, VerticalResizeHandle } from './ResizeHandles'
-import { MsaViewModel } from '../model'
+import type { MsaViewModel } from '../model'
 import TreeRuler from './tree/TreeRuler'
 import Header from './header/Header'
 import MSAPanel from './msa/MSAPanel'
 import TreePanel from './tree/TreePanel'
 import Minimap from './minimap/Minimap'
+import VerticalScrollbar from './VerticalScrollbar'
-function TopArea({ model }: { model: MsaViewModel }) {
+const TopArea = observer(function ({ model }: { model: MsaViewModel }) {
+  const { showHorizontalScrollbar } = model
   return (
     <div style={{ display: 'flex' }}>
       <TreeRuler model={model} />
-      <Minimap model={model} />
+      {showHorizontalScrollbar ? <Minimap model={model} /> : null}
     </div>
   )
-}
-function MainArea({ model }: { model: MsaViewModel }) {
+})
+const MainArea = observer(function ({ model }: { model: MsaViewModel }) {
+  const { showVerticalScrollbar } = model
   return (
     <div style={{ display: 'flex' }}>
       <TreePanel model={model} />
       <VerticalResizeHandle model={model} />
       <MSAPanel model={model} />
+      {showVerticalScrollbar ? <VerticalScrollbar model={model} /> : null}
     </div>
   )
-}
+})
 const View = observer(function ({ model }: { model: MsaViewModel }) {
   return (
     <div style={{ position: 'relative' }}>
       <TopArea model={model} />
       <MainArea model={model} />
     </div>
   )
 })
 const MSAView = observer(function ({ model }: { model: MsaViewModel }) {
-  const { height, DialogComponent, DialogProps } = model
+  const { height, viewInitialized, DialogComponent, DialogProps } = model
   return (
     <div>
-      <div style={{ height, overflow: 'hidden' }}>
-        <Header model={model} />
-        <View model={model} />
-      </div>
-      <HorizontalResizeHandle model={model} />
-      {DialogComponent ? (
-        <Suspense fallback={null}>
-          <DialogComponent {...DialogProps} />
-        </Suspense>
+      {viewInitialized ? (
+        <>
+          <div style={{ height, overflow: 'hidden' }}>
+            <Header model={model} />
+            <View model={model} />
+          </div>
+          <HorizontalResizeHandle model={model} />
+          {DialogComponent ? (
+            <Suspense fallback={null}>
+              <DialogComponent {...DialogProps} />
+            </Suspense>
+          ) : null}
+        </>
       ) : null}
     </div>
   )

package/src/components/ResizeHandles.tsx CHANGED Viewed

@@ -2,7 +2,7 @@ import React, { useEffect, useRef, useState } from 'react'
 import { observer } from 'mobx-react'
 // locals
-import { MsaViewModel } from '../model'
+import type { MsaViewModel } from '../model'
 export const VerticalResizeHandle = observer(function ({
   model,
@@ -62,7 +62,7 @@ export const VerticalResizeHandle = observer(function ({
           cursor: 'ew-resize',
           height: '100%',
           width: resizeHandleWidth,
-          background: `rgba(200,200,200)`,
+          background: 'rgba(200,200,200)',
           position: 'relative',
         }}
       />
@@ -128,7 +128,7 @@ export const HorizontalResizeHandle = observer(function ({
           cursor: 'ns-resize',
           width: '100%',
           height: resizeHandleWidth,
-          background: `rgba(200,200,200)`,
+          background: 'rgba(200,200,200)',
           position: 'relative',
         }}
       />

package/src/components/SequenceTextArea.tsx CHANGED Viewed

@@ -22,8 +22,11 @@ export default function SequenceTextArea({ str }: { str: [string, string][] }) {
   const { classes } = useStyles()
   const [copied, setCopied] = useState(false)
   const [showGaps, setShowGaps] = useState(false)
+  const [showEmpty, setShowEmpty] = useState(false)
   const disp = str
+    .map(([s1, s2]) => [s1, showGaps ? s2 : s2.replaceAll('-', '')])
+    .filter(f => (showEmpty ? true : !!f[1]))
     .map(([s1, s2]) => `>${s1}\n${showGaps ? s2 : s2.replaceAll('-', '')}`)
     .join('\n')
   return (
@@ -44,6 +47,11 @@ export default function SequenceTextArea({ str }: { str: [string, string][] }) {
         checked={showGaps}
         onChange={() => setShowGaps(!showGaps)}
       />
+      <Checkbox2
+        label="Show empty"
+        checked={showEmpty}
+        onChange={() => setShowEmpty(!showEmpty)}
+      />
       <TextField
         variant="outlined"
         multiline

package/src/components/TextTrack.tsx CHANGED Viewed

@@ -2,7 +2,7 @@ import React, { useRef, useMemo, useEffect } from 'react'
 import { useTheme } from '@mui/material'
 import { observer } from 'mobx-react'
 // locals
-import { MsaViewModel, ITextTrack } from '../model'
+import type { MsaViewModel, ITextTrack } from '../model'
 import { colorContrast } from '../util'
 const AnnotationBlock = observer(function ({

package/src/components/Track.tsx CHANGED Viewed

@@ -8,7 +8,7 @@ import { makeStyles } from 'tss-react/mui'
 import ArrowDropDownIcon from '@mui/icons-material/ArrowDropDown'
 // locals
-import { MsaViewModel } from '../model'
+import type { MsaViewModel } from '../model'
 // lazies
 const TrackInfoDialog = lazy(() => import('./dialogs/TrackInfoDialog'))