react-msaview 3.1.11 → 3.2.0

package/dist/components/minimap/MinimapSVG.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const MinimapSVG: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/minimap/MinimapSVG.js

@@ -1,6 +1,6 @@
 import React from 'react';
 import { observer } from 'mobx-react';
-const MinimapSVG = observer(function ({ model }) {
+const MinimapSVG = observer(({ model }) => {
     const { scrollX, msaAreaWidth: W, minimapHeight: H, colWidth, numColumns, } = model;
     const BAR_HEIGHT = 12;
     const H2 = H - 12;

package/dist/components/minimap/MinimapSVG.js.map

@@ -1 +1 @@
-{"version":3,"file":"MinimapSVG.js","sourceRoot":"","sources":["../../../src/components/minimap/MinimapSVG.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAGrC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,EACJ,OAAO,EACP,YAAY,EAAE,CAAC,EACf,aAAa,EAAE,CAAC,EAChB,QAAQ,EACR,UAAU,GACX,GAAG,KAAK,CAAA;IAET,MAAM,UAAU,GAAG,EAAE,CAAA;IACrB,MAAM,EAAE,GAAG,CAAC,GAAG,EAAE,CAAA;IAEjB,MAAM,IAAI,GAAG,CAAC,GAAG,UAAU,GAAG,QAAQ,CAAA;IACtC,MAAM,IAAI,GAAG,CAAC,OAAO,CAAA;IACrB,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,CAAA;IACtB,MAAM,CAAC,GAAG,IAAI,GAAG,IAAI,CAAA;IACrB,MAAM,CAAC,GAAG,KAAK,GAAG,IAAI,CAAA;IACtB,MAAM,IAAI,GAAG,yBAAyB,CAAA;IAEtC,OAAO,CACL;QACE,8BACE,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,CAAC,EACR,MAAM,EAAE,UAAU,EAClB,MAAM,EAAC,MAAM,EACb,IAAI,EAAC,MAAM,GACX;QACF,8BACE,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EACjB,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,CAAC,GAAG,CAAC,EACZ,MAAM,EAAE,UAAU,EAClB,IAAI,EAAE,IAAI,EACV,MAAM,EAAC,MAAM,GACb;QACF,2BAAG,SAAS,EAAE,eAAe,UAAU,GAAG;YACxC,iCACE,IAAI,EAAE,IAAI,EACV,MAAM,EAAE;oBACN,CAAC,CAAC,EAAE,CAAC,CAAC;oBACN,CAAC,CAAC,EAAE,CAAC,CAAC;oBACN,CAAC,CAAC,EAAE,EAAE,CAAC;oBACP,CAAC,CAAC,EAAE,EAAE,CAAC;iBACR,CAAC,QAAQ,EAAE,GACZ,CACA,CACH,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
+{"version":3,"file":"MinimapSVG.js","sourceRoot":"","sources":["../../../src/components/minimap/MinimapSVG.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAGrC,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IACjE,MAAM,EACJ,OAAO,EACP,YAAY,EAAE,CAAC,EACf,aAAa,EAAE,CAAC,EAChB,QAAQ,EACR,UAAU,GACX,GAAG,KAAK,CAAA;IAET,MAAM,UAAU,GAAG,EAAE,CAAA;IACrB,MAAM,EAAE,GAAG,CAAC,GAAG,EAAE,CAAA;IAEjB,MAAM,IAAI,GAAG,CAAC,GAAG,UAAU,GAAG,QAAQ,CAAA;IACtC,MAAM,IAAI,GAAG,CAAC,OAAO,CAAA;IACrB,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,CAAA;IACtB,MAAM,CAAC,GAAG,IAAI,GAAG,IAAI,CAAA;IACrB,MAAM,CAAC,GAAG,KAAK,GAAG,IAAI,CAAA;IACtB,MAAM,IAAI,GAAG,yBAAyB,CAAA;IAEtC,OAAO,CACL;QACE,8BACE,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,CAAC,EACR,MAAM,EAAE,UAAU,EAClB,MAAM,EAAC,MAAM,EACb,IAAI,EAAC,MAAM,GACX;QACF,8BACE,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EACjB,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,CAAC,GAAG,CAAC,EACZ,MAAM,EAAE,UAAU,EAClB,IAAI,EAAE,IAAI,EACV,MAAM,EAAC,MAAM,GACb;QACF,2BAAG,SAAS,EAAE,eAAe,UAAU,GAAG;YACxC,iCACE,IAAI,EAAE,IAAI,EACV,MAAM,EAAE;oBACN,CAAC,CAAC,EAAE,CAAC,CAAC;oBACN,CAAC,CAAC,EAAE,CAAC,CAAC;oBACN,CAAC,CAAC,EAAE,EAAE,CAAC;oBACP,CAAC,CAAC,EAAE,EAAE,CAAC;iBACR,CAAC,QAAQ,EAAE,GACZ,CACA,CACH,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/components/msa/MSACanvas.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const MSACanvas: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/msa/MSACanvas.js

@@ -3,7 +3,7 @@ import { observer } from 'mobx-react';
 import MSACanvasBlock from './MSACanvasBlock';
 import Loading from './Loading';
 const MSACanvas = observer(function ({ model }) {
-    const { MSA, msaFilehandle, height, msaAreaWidth, blocks2d } = model;
+    const { MSA, verticalScrollbarWidth, msaFilehandle, height, msaAreaWidth, blocks2d, } = model;
     const ref = useRef(null);
     // wheel
     const scheduled = useRef(false);
@@ -34,7 +34,7 @@ const MSACanvas = observer(function ({ model }) {
             event.preventDefault();
             event.stopPropagation();
         }
-        curr.addEventListener('wheel', onWheel);
+        curr.addEventListener('wheel', onWheel, { passive: false });
         return () => {
             curr.removeEventListener('wheel', onWheel);
         };
@@ -98,7 +98,7 @@ const MSACanvas = observer(function ({ model }) {
         }, style: {
             position: 'relative',
             height,
-            width: msaAreaWidth,
+            width: msaAreaWidth - verticalScrollbarWidth,
             overflow: 'hidden',
         } }, !MSA && !msaFilehandle ? null : MSA ? (blocks2d.map(([bx, by]) => (React.createElement(MSACanvasBlock, { key: `${bx}_${by}`, model: model, offsetX: bx, offsetY: by })))) : (React.createElement(Loading, null))));
 });

package/dist/components/msa/MSACanvas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,OAAO,MAAM,WAAW,CAAA;AAE/B,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EACJ,GAAG,EACH,sBAAsB,EACtB,aAAa,EACb,MAAM,EACN,YAAY,EACZ,QAAQ,GACT,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,QAAQ;IACR,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,iCAAiC;IACjC,MAAM,KAAK,GAAG,MAAM,CAAS,CAAC,CAAC,CAAA;IAC/B,MAAM,KAAK,GAAG,MAAM,CAAS,CAAC,CAAC,CAAA;IAC/B,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzD,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAM;QACR,CAAC;QACD,SAAS,OAAO,CAAC,KAAiB;YAChC,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAC9B,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAE9B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;gBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;gBACxB,qBAAqB,CAAC,GAAG,EAAE;oBACzB,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;gBAC3B,CAAC,CAAC,CAAA;YACJ,CAAC;YACD,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,KAAK,CAAC,eAAe,EAAE,CAAA;QACzB,CAAC;QACD,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC,CAAA;QAC3D,OAAO,GAAG,EAAE;YACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QAC5C,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,OAAO,GAAG,GAAG,EAAE,GAAE,CAAC,CAAA;QAEtB,SAAS,eAAe,CAAC,KAAiB;YACxC,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,MAAM,SAAS,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACvC,MAAM,SAAS,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACvC,IAAI,SAAS,IAAI,SAAS,EAAE,CAAC;gBAC3B,uEAAuE;gBACvE,8EAA8E;gBAC9E,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;oBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC,GAAG,EAAE;wBAChC,KAAK,CAAC,SAAS,CAAC,SAAS,CAAC,CAAA;wBAC1B,KAAK,CAAC,SAAS,CAAC,SAAS,CAAC,CAAA;wBAC1B,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;wBACzB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;wBAC7B,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;oBAC/B,CAAC,CAAC,CAAA;gBACJ,CAAC;YACH,CAAC;QACH,CAAC;QAED,SAAS,aAAa;YACpB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,IAAI,aAAa,EAAE,CAAC;gBAClB,gBAAgB,CAAC,KAAK,CAAC,CAAA;YACzB,CAAC;QACH,CAAC;QAED,IAAI,aAAa,EAAE,CAAC;YAClB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,GAAG,EAAE;gBACb,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;QACH,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,CAAC,CAAC,CAAA;IAE1B,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,2DAA2D;YAC3D,MAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;YAC1C,IAAI,MAAM,CAAC,SAAS,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC;gBAC/C,OAAM;YACR,CAAC;YAED,qCAAqC;YACrC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACvB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC7B,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC7B,gBAAgB,CAAC,IAAI,CAAC,CAAA;YACxB,CAAC;QACH,CAAC,EACD,SAAS,EAAE,KAAK,CAAC,EAAE;YACjB,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,gBAAgB,CAAC,KAAK,CAAC,CAAA;QACzB,CAAC,EACD,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM;YACN,KAAK,EAAE,YAAY,GAAG,sBAAsB;YAC5C,QAAQ,EAAE,QAAQ;SACnB,IAEA,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CACrC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CACzB,oBAAC,cAAc,IACb,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,EAClB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,OAAO,EAAE,EAAE,GACX,CACH,CAAC,CACH,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,OAAG,CACZ,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}

package/dist/components/msa/MSACanvasBlock.d.ts

@@ -1,8 +1,8 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
-declare const MSABlock: ({ model, offsetX, offsetY, }: {
+import type { MsaViewModel } from '../../model';
+declare const MSACanvasBlock: ({ model, offsetX, offsetY, }: {
     model: MsaViewModel;
     offsetX: number;
     offsetY: number;
 }) => React.JSX.Element;
-export default MSABlock;
+export default MSACanvasBlock;

package/dist/components/msa/MSACanvasBlock.js

@@ -6,7 +6,7 @@ import { observer } from 'mobx-react';
 import { renderMSABlock } from './renderMSABlock';
 import { colorContrast } from '../../util';
 import { renderBoxFeatureCanvasBlock } from './renderBoxFeatureCanvasBlock';
-const MSABlock = observer(function ({ model, offsetX, offsetY, }) {
+const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
     const { colWidth, rowHeight, scrollY, scrollX, colorScheme, blockSize, mouseClickCol, mouseClickRow, highResScaleFactor, } = model;
     const theme = useTheme();
     const contrastScheme = useMemo(() => colorContrast(colorScheme, theme), [colorScheme, theme]);
@@ -19,7 +19,8 @@ const MSABlock = observer(function ({ model, offsetX, offsetY, }) {
         return autorun(() => {
             ctx.resetTransform();
             ctx.clearRect(0, 0, blockSize, blockSize);
-            if (model.featureMode) {
+            const { actuallyShowDomains } = model;
+            if (actuallyShowDomains) {
                 renderBoxFeatureCanvasBlock({
                     ctx,
                     offsetX,
@@ -70,5 +71,5 @@ const MSABlock = observer(function ({ model, offsetX, offsetY, }) {
             height: blockSize,
         } }));
 });
-export default MSABlock;
+export default MSACanvasBlock;
 //# sourceMappingURL=MSACanvasBlock.js.map

package/dist/components/msa/MSACanvasBlock.js.map

@@ -1 +1 @@
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package/dist/components/msa/MSAMouseoverCanvas.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
-declare const MSAMouseoverCanvas: ({ model, }: {
+import type { MsaViewModel } from '../../model';
+declare const MSAMouseoverCanvas: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;
 export default MSAMouseoverCanvas;

package/dist/components/msa/MSAMouseoverCanvas.js

@@ -2,7 +2,7 @@ import React, { useEffect, useRef } from 'react';
 import { observer } from 'mobx-react';
 import { autorun } from 'mobx';
 import { renderMouseover } from './renderMSAMouseover';
-const MSAMouseoverCanvas = observer(function ({ model, }) {
+const MSAMouseoverCanvas = observer(({ model }) => {
     const ref = useRef(null);
     const { height, width } = model;
     useEffect(() => {

package/dist/components/msa/MSAMouseoverCanvas.js.map

@@ -1 +1 @@
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package/dist/components/msa/MSAPanel.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const MSAPanel: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts

@@ -1,4 +1,4 @@
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 export declare function renderBoxFeatureCanvasBlock({ model, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeYOverride, }: {
     offsetX: number;
     offsetY: number;

package/dist/components/msa/renderBoxFeatureCanvasBlock.js

@@ -1,12 +1,11 @@
 export function renderBoxFeatureCanvasBlock({ model, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeYOverride, }) {
-    const { hierarchy, blockSize, rowHeight, highResScaleFactor, featureMode } = model;
-    if (featureMode) {
+    const { leaves, blockSize, rowHeight, highResScaleFactor, showDomains } = model;
+    if (showDomains) {
         const k = highResScaleFactorOverride || highResScaleFactor;
         const by = blockSizeYOverride || blockSize;
         ctx.resetTransform();
         ctx.scale(k, k);
         ctx.translate(-offsetX, rowHeight / 2 - offsetY);
-        const leaves = hierarchy.leaves();
         const yStart = Math.max(0, Math.floor((offsetY - rowHeight) / rowHeight));
         const yEnd = Math.max(0, Math.ceil((offsetY + by + rowHeight) / rowHeight));
         const visibleLeaves = leaves.slice(yStart, yEnd);

package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"renderBoxFeatureCanvasBlock.js","sourceRoot":"","sources":["../../../src/components/msa/renderBoxFeatureCanvasBlock.ts"],"names":[],"mappings":"AAMA,MAAM,UAAU,2BAA2B,CAAC,EAC1C,KAAK,EACL,OAAO,EACP,OAAO,EACP,GAAG,EACH,0BAA0B,EAC1B,kBAAkB,GAQnB;IACC,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,SAAS,EAAE,kBAAkB,EAAE,WAAW,EAAE,GACrE,KAAK,CAAA;IACP,IAAI,WAAW,EAAE,CAAC;QAChB,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;QAC1D,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;QAC1C,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;QACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,SAAS,GAAG,CAAC,GAAG,OAAO,CAAC,CAAA;QAEhD,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,OAAO,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC,CAAC,CAAA;QACzE,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,EAAE,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC,CAAC,CAAA;QAC3E,MAAM,aAAa,GAAG,MAAM,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAEhD,SAAS,CAAC;YACR,KAAK;YACL,GAAG;YACH,aAAa;SACd,CAAC,CAAA;IACJ,CAAC;AACH,CAAC;AAED,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,GAAG,EACH,aAAa,GAKd;IACC,MAAM,EACJ,cAAc,EACd,QAAQ,EACR,SAAS,EACT,WAAW,EACX,aAAa,EACb,+BAA+B,GAChC,GAAG,KAAK,CAAA;IAET,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;QACjC,MAAM,EACJ,CAAC,EACD,IAAI,EAAE,EAAE,IAAI,EAAE,GACf,GAAG,IAAI,CAAA;QACR,MAAM,CAAC,GAAG,CAAE,CAAA;QAEZ,MAAM,KAAK,GAAG,+BAA+B,EAAE,CAAC,IAAI,CAAC,CAAA;QAErD,IAAI,CAAC,GAAG,CAAC,CAAA;QACT,IAAI,KAAK,EAAE,CAAC;YACV,KAAK,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,SAAS,EAAE,IAAI,KAAK,EAAE,CAAC;gBAC9C,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,IAAI,EAAE,KAAK,GAAG,CAAC,CAAC,CAAA;gBAClE,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,IAAI,EAAE,GAAG,CAAC,CAAA;gBAC5D,MAAM,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAA;gBACvB,GAAG,CAAC,SAAS,GAAG,WAAW,CAAC,SAAS,CAAC,CAAA;gBACtC,GAAG,CAAC,WAAW,GAAG,aAAa,CAAC,SAAS,CAAC,CAAA;gBAC1C,MAAM,CAAC,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;gBACxC,MAAM,CAAC,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;gBACtD,MAAM,EAAE,GAAG,QAAQ,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,CAAA;gBAC/B,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAA;gBACzB,GAAG,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAA;gBAC3B,CAAC,EAAE,CAAA;YACL,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/components/msa/renderMSABlock.d.ts

@@ -1,5 +1,5 @@
-import { Theme } from '@mui/material';
-import { MsaViewModel } from '../../model';
+import type { Theme } from '@mui/material';
+import type { MsaViewModel } from '../../model';
 export declare function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }: {
     offsetX: number;
     offsetY: number;

package/dist/components/msa/renderMSABlock.js

@@ -1,6 +1,6 @@
 import { getClustalXColor, getPercentIdentityColor } from '../../colorSchemes';
 export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
-    const { hierarchy, colWidth, blockSize, rowHeight, fontSize, highResScaleFactor, featureMode, } = model;
+    const { colWidth, blockSize, rowHeight, fontSize, highResScaleFactor, actuallyShowDomains, leaves, } = model;
     const k = highResScaleFactorOverride || highResScaleFactor;
     const bx = blockSizeXOverride || blockSize;
     const by = blockSizeYOverride || blockSize;
@@ -9,13 +9,12 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
     ctx.translate(-offsetX, rowHeight / 2 - offsetY);
     ctx.textAlign = 'center';
     ctx.font = ctx.font.replace(/\d+px/, `${fontSize}px`);
-    const leaves = hierarchy.leaves();
     const yStart = Math.max(0, Math.floor((offsetY - rowHeight) / rowHeight));
     const yEnd = Math.max(0, Math.ceil((offsetY + by + rowHeight) / rowHeight));
     const xStart = Math.max(0, Math.floor(offsetX / colWidth));
     const xEnd = Math.max(0, Math.ceil((offsetX + bx) / colWidth));
     const visibleLeaves = leaves.slice(yStart, yEnd);
-    if (!featureMode) {
+    if (!actuallyShowDomains) {
         drawTiles({
             model,
             ctx,
@@ -40,7 +39,7 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
     ctx.resetTransform();
 }
 function drawTiles({ model, offsetX, ctx, visibleLeaves, theme, xStart, xEnd, }) {
-    const { bgColor, colorSchemeName, colorScheme, colStats, columns, colWidth, rowHeight, } = model;
+    const { bgColor, colorSchemeName, colorScheme, colStats, colStatsSums, columns, colWidth, rowHeight, } = model;
     for (const node of visibleLeaves) {
         const { data: { name }, } = node;
         const y = node.x;
@@ -48,21 +47,20 @@ function drawTiles({ model, offsetX, ctx, visibleLeaves, theme, xStart, xEnd, })
         for (let i = 0; i < str?.length; i++) {
             const letter = str[i];
             const color = colorSchemeName === 'clustalx_protein_dynamic'
-                ? getClustalXColor(colStats[xStart + i], model, name, xStart + i)
+                ? getClustalXColor(colStats[xStart + i], colStatsSums[xStart + i], model, name, xStart + i)
                 : colorSchemeName === 'percent_identity_dynamic'
-                    ? getPercentIdentityColor(colStats[xStart + i], model, name, xStart + i)
+                    ? getPercentIdentityColor(colStats[xStart + i], colStatsSums[xStart + i], model, name, xStart + i)
                     : colorScheme[letter.toUpperCase()];
             if (bgColor) {
-                const x = i * colWidth + offsetX - (offsetX % colWidth);
                 ctx.fillStyle = color || theme.palette.background.default;
-                ctx.fillRect(x, y - rowHeight, colWidth, rowHeight);
+                ctx.fillRect(i * colWidth + offsetX - (offsetX % colWidth), y - rowHeight, colWidth, rowHeight);
             }
         }
     }
 }
 function drawText({ model, offsetX, contrastScheme, ctx, visibleLeaves, xStart, xEnd, }) {
-    const { bgColor, featureMode, colorScheme, columns, colWidth, rowHeight } = model;
-    if (rowHeight >= 5 && colWidth > rowHeight / 2) {
+    const { bgColor, actuallyShowDomains, showMsaLetters, colorScheme, columns, colWidth, contrastLettering, rowHeight, } = model;
+    if (showMsaLetters) {
         for (const node of visibleLeaves) {
             const { data: { name }, } = node;
             const y = node.x;
@@ -70,10 +68,12 @@ function drawText({ model, offsetX, contrastScheme, ctx, visibleLeaves, xStart,
             for (let i = 0; i < str?.length; i++) {
                 const letter = str[i];
                 const color = colorScheme[letter.toUpperCase()];
-                const contrast = contrastScheme[letter.toUpperCase()] || 'black';
+                const contrast = contrastLettering
+                    ? contrastScheme[letter.toUpperCase()] || 'black'
+                    : 'black';
                 const x = i * colWidth + offsetX - (offsetX % colWidth);
                 // note: -rowHeight/4 matches +rowHeight/4 in tree
-                ctx.fillStyle = featureMode
+                ctx.fillStyle = actuallyShowDomains
                     ? 'black'
                     : bgColor
                         ? contrast

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@@ -1 +1 @@
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+{"version":3,"file":"renderMSABlock.js","sourceRoot":"","sources":["../../../src/components/msa/renderMSABlock.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,gBAAgB,EAAE,uBAAuB,EAAE,MAAM,oBAAoB,CAAA;AAG9E,MAAM,UAAU,cAAc,CAAC,EAC7B,KAAK,EACL,OAAO,EACP,OAAO,EACP,cAAc,EACd,GAAG,EACH,KAAK,EACL,0BAA0B,EAC1B,kBAAkB,EAClB,kBAAkB,GAWnB;IACC,MAAM,EACJ,QAAQ,EACR,SAAS,EACT,SAAS,EACT,QAAQ,EACR,kBAAkB,EAClB,mBAAmB,EACnB,MAAM,GACP,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAC1D,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,SAAS,GAAG,CAAC,GAAG,OAAO,CAAC,CAAA;IAChD,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;IACxB,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,GAAG,QAAQ,IAAI,CAAC,CAAA;IAErD,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,OAAO,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC,CAAC,CAAA;IACzE,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,EAAE,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC,CAAC,CAAA;IAC3E,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAA;IAC1D,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,EAAE,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAA;IAC9D,MAAM,aAAa,GAAG,MAAM,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAEhD,IAAI,CAAC,mBAAmB,EAAE,CAAC;QACzB,SAAS,CAAC;YACR,KAAK;YACL,GAAG;YACH,KAAK;YACL,OAAO;YACP,OAAO;YACP,MAAM;YACN,IAAI;YACJ,aAAa;SACd,CAAC,CAAA;IACJ,CAAC;IACD,QAAQ,CAAC;QACP,KAAK;QACL,GAAG;QACH,OAAO;QACP,cAAc;QACd,KAAK;QACL,MAAM;QACN,IAAI;QACJ,aAAa;KACd,CAAC,CAAA;IACF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,OAAO,EACP,GAAG,EACH,aAAa,EACb,KAAK,EACL,MAAM,EACN,IAAI,GAUL;IACC,MAAM,EACJ,OAAO,EACP,eAAe,EACf,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,OAAO,EACP,QAAQ,EACR,SAAS,GACV,GAAG,KAAK,CAAA;IAET,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;QACjC,MAAM,EACJ,IAAI,EAAE,EAAE,IAAI,EAAE,GACf,GAAG,IAAI,CAAA;QACR,MAAM,CAAC,GAAG,IAAI,CAAC,CAAE,CAAA;QACjB,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACrC,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;YACrB,MAAM,KAAK,GACT,eAAe,KAAK,0BAA0B;gBAC5C,CAAC,CAAC,gBAAgB,CACd,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,EACpB,YAAY,CAAC,MAAM,GAAG,CAAC,CAAC,EACxB,KAAK,EACL,IAAI,EACJ,MAAM,GAAG,CAAC,CACX;gBACH,CAAC,CAAC,eAAe,KAAK,0BAA0B;oBAC9C,CAAC,CAAC,uBAAuB,CACrB,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,EACpB,YAAY,CAAC,MAAM,GAAG,CAAC,CAAC,EACxB,KAAK,EACL,IAAI,EACJ,MAAM,GAAG,CAAC,CACX;oBACH,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAA;YACzC,IAAI,OAAO,EAAE,CAAC;gBACZ,GAAG,CAAC,SAAS,GAAG,KAAK,IAAI,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,CAAA;gBACzD,GAAG,CAAC,QAAQ,CACV,CAAC,GAAG,QAAQ,GAAG,OAAO,GAAG,CAAC,OAAO,GAAG,QAAQ,CAAC,EAC7C,CAAC,GAAG,SAAS,EACb,QAAQ,EACR,SAAS,CACV,CAAA;YACH,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,QAAQ,CAAC,EAChB,KAAK,EACL,OAAO,EACP,cAAc,EACd,GAAG,EACH,aAAa,EACb,MAAM,EACN,IAAI,GAUL;IACC,MAAM,EACJ,OAAO,EACP,mBAAmB,EACnB,cAAc,EACd,WAAW,EACX,OAAO,EACP,QAAQ,EACR,iBAAiB,EACjB,SAAS,GACV,GAAG,KAAK,CAAA;IACT,IAAI,cAAc,EAAE,CAAC;QACnB,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;YACjC,MAAM,EACJ,IAAI,EAAE,EAAE,IAAI,EAAE,GACf,GAAG,IAAI,CAAA;YACR,MAAM,CAAC,GAAG,IAAI,CAAC,CAAE,CAAA;YACjB,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACrC,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;gBACrB,MAAM,KAAK,GAAG,WAAW,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAA;gBAC/C,MAAM,QAAQ,GAAG,iBAAiB;oBAChC,CAAC,CAAC,cAAc,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,IAAI,OAAO;oBACjD,CAAC,CAAC,OAAO,CAAA;gBACX,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,GAAG,OAAO,GAAG,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAA;gBAEvD,kDAAkD;gBAClD,GAAG,CAAC,SAAS,GAAG,mBAAmB;oBACjC,CAAC,CAAC,OAAO;oBACT,CAAC,CAAC,OAAO;wBACP,CAAC,CAAC,QAAQ;wBACV,CAAC,CAAC,KAAK,IAAI,OAAO,CAAA;gBACtB,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,QAAQ,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,GAAG,CAAC,CAAC,CAAA;YAC3D,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/components/msa/renderMSAMouseover.d.ts

@@ -1,4 +1,4 @@
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 export declare function renderMouseover({ ctx, model, }: {
     ctx: CanvasRenderingContext2D;
     model: MsaViewModel;

package/dist/components/tree/TreeBranchMenu.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 interface Node {
     x: number;
     y: number;

package/dist/components/tree/TreeCanvas.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const TreeCanvas: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/tree/TreeCanvas.js

@@ -1,4 +1,5 @@
-import React, { useEffect, useRef, useState } from 'react';
+import React from 'react';
+import { useEffect, useRef, useState } from 'react';
 import { observer } from 'mobx-react';
 import TreeCanvasBlock from './TreeCanvasBlock';
 import { padding } from './renderTreeCanvas';
@@ -40,7 +41,8 @@ const TreeCanvas = observer(function ({ model }) {
             const distanceY = currY - prevY.current;
             if (distanceY) {
                 // use rAF to make it so multiple event handlers aren't fired per-frame
-                // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
+                // see
+                // https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
                 if (!scheduled.current) {
                     scheduled.current = true;
                     window.requestAnimationFrame(() => {
@@ -79,16 +81,15 @@ const TreeCanvas = observer(function ({ model }) {
             setMouseDragging(true);
         }
     }
-    // this local mouseup is used in addition to the global because sometimes
-    // the global add/remove are not called in time, resulting in issue #533
-    function mouseUp(event) {
-        event.preventDefault();
-        setMouseDragging(false);
-    }
-    function mouseLeave(event) {
-        event.preventDefault();
-    }
-    return (React.createElement("div", { ref: ref, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave, style: {
+    return (React.createElement("div", { ref: ref, onMouseDown: mouseDown, onMouseUp: event => {
+            // this local mouseup is used in addition to the global because
+            // sometimes the global add/remove are not called in time, resulting in
+            // issue #533
+            event.preventDefault();
+            setMouseDragging(false);
+        }, onMouseLeave: event => {
+            event.preventDefault();
+        }, style: {
             height,
             position: 'relative',
             width: treeWidth + padding,

package/dist/components/tree/TreeCanvas.js.map

@@ -1 +1 @@
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package/dist/components/tree/TreeCanvasBlock.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const TreeCanvasBlock: ({ model, offsetY, }: {
     model: MsaViewModel;
     offsetY: number;

package/dist/components/tree/TreeCanvasBlock.js

@@ -1,4 +1,5 @@
-import React, { useCallback, useEffect, useRef, useState } from 'react';
+import React from 'react';
+import { useCallback, useEffect, useRef, useState } from 'react';
 import { autorun } from 'mobx';
 import { observer } from 'mobx-react';
 import { useTheme } from '@mui/material';

package/dist/components/tree/TreeCanvasBlock.js.map

@@ -1 +1 @@
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package/dist/components/tree/TreeNodeMenu.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const TreeMenu: ({ node, onClose, model, }: {
     node: {
         x: number;

package/dist/components/tree/TreeNodeMenu.js

@@ -4,7 +4,7 @@ import { observer } from 'mobx-react';
 // lazies
 const TreeNodeInfoDialog = lazy(() => import('./dialogs/TreeNodeInfoDialog'));
 const TreeMenu = observer(function ({ node, onClose, model, }) {
-    const { collapsed, collapsed2 } = model;
+    const { collapsed, collapsedLeaves } = model;
     return (React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
             top: node.y,
             left: node.x,
@@ -35,7 +35,7 @@ const TreeMenu = observer(function ({ node, onClose, model, }) {
                     }
                 }
                 onClose();
-            } }, collapsed.includes(node.id) || collapsed2.includes(node.id)
+            } }, collapsed.includes(node.id) || collapsedLeaves.includes(node.id)
             ? 'Show node'
             : 'Hide node')));
 });

package/dist/components/tree/TreeNodeMenu.js.map

@@ -1 +1 @@
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package/dist/components/tree/TreePanel.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const TreePanel: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/tree/TreeRuler.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const TreeRuler: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/tree/dialogs/TreeNodeInfoDialog.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../../model';
+import type { MsaViewModel } from '../../../model';
 declare const _default: ({ info, model, nodeName, onClose, }: {
     info: Record<string, unknown>;
     model: MsaViewModel;

package/dist/components/tree/renderTreeCanvas.d.ts

@@ -1,6 +1,6 @@
-import RBush from 'rbush';
-import { Theme } from '@mui/material';
-import { MsaViewModel } from '../../model';
+import type RBush from 'rbush';
+import type { Theme } from '@mui/material';
+import type { MsaViewModel } from '../../model';
 export declare const padding = 600;
 interface ClickEntry {
     name: string;