rea-agents 5.0.0 → 6.1.0

package/dist/domain/apple/dylibResolution.js

@@ -0,0 +1,478 @@
+import { z } from "zod";
+import { compatibleSlice, directoryOf, expandPrefix, joinPath, resolveTreePath, } from "./dyldPaths.js";
+import { digestSchema } from "../digests.js";
+import { hasApplicableDyldOverrides, embeddedDyldOverrides, } from "./dyldEnvironment.js";
+import { DYLIB_RESOLUTION_LIMITATIONS, deriveFindings, } from "./dylibResolutionFindings.js";
+/** Normalized path below the analyzed root: no `.`/`..` or empty segments. */
+const ROOT_RELATIVE_PATH = /^(?!\/)(?!(?:.*\/)?\.{1,2}(?:\/|$))(?!.*\/\/)(?!.*\/$)[^\\\0]+$/u;
+const rootRelativePathSchema = z.string().min(1).regex(ROOT_RELATIVE_PATH);
+/** Caller selection of process roots and one CPU slice. */
+export const dylibResolutionInputSchema = z.strictObject({
+    roots: z.array(rootRelativePathSchema).min(1).optional(),
+    architecture: z.enum(["arm64", "arm64e", "x86_64"]).optional(),
+});
+const dependencyCommandSchema = z.enum([
+    "LC_LOAD_DYLIB",
+    "LC_LOAD_WEAK_DYLIB",
+    "LC_REEXPORT_DYLIB",
+    "LC_LAZY_LOAD_DYLIB",
+    "LC_LOAD_UPWARD_DYLIB",
+]);
+const dependencySchema = z.strictObject({
+    command: dependencyCommandSchema,
+    encoding: z.enum(["dylib_command", "dylib_use_command"]),
+    install_name: z.string(),
+    weak: z.boolean(),
+    upward: z.boolean(),
+    reexport: z.boolean(),
+    delayed_init: z.boolean(),
+    current_version: z.string(),
+    compatibility_version: z.string(),
+});
+/** Observed dylib-loading facts of one Mach-O slice. */
+export const machoSliceSchema = z.strictObject({
+    architecture: z.string().min(1),
+    /** Physical identity observed in the thin header and, for FAT, its table. */
+    slice_offset: z.number().int().nonnegative(),
+    slice_size: z.number().int().positive(),
+    cpu_type: z.number().int().nonnegative(),
+    cpu_subtype: z.number().int().nonnegative(),
+    fat_cpu_type: z.number().int().nonnegative().nullable(),
+    fat_cpu_subtype: z.number().int().nonnegative().nullable(),
+    fat_alignment_exponent: z.number().int().nonnegative().nullable(),
+    file_type: z.enum(["execute", "dylib", "bundle", "other"]),
+    file_type_code: z.number().int().nonnegative(),
+    /** Raw LC_BUILD_VERSION platform number; null means no such command was observed. */
+    platform: z.number().int().nonnegative().nullable(),
+    /** Every distinct build platform declared by LC_BUILD_VERSION/version-min commands. */
+    platforms: z.array(z.number().int().nonnegative()),
+    install_name: z.string().nullable(),
+    dependencies: z.array(dependencySchema),
+    rpaths: z.array(z.string()),
+    dyld_environment: z.array(z.string()),
+    code_signature_present: z.boolean(),
+});
+const candidateSchema = z.strictObject({
+    path: z.string(),
+    source: z.enum([
+        "literal",
+        "executable_path",
+        "loader_path",
+        "rpath",
+        "already-loaded",
+    ]),
+    rpath: z.string().nullable(),
+    rpath_owner: z.string().nullable(),
+    outcome: z.enum([
+        "resolved",
+        "absent",
+        "not-mach-o",
+        "malformed",
+        "unsupported",
+        "architecture-missing",
+        "not-loadable",
+        "platform-mismatch",
+        "outside-target",
+        "escapes-target",
+        "undetermined",
+    ]),
+    resolved_path: z.string().nullable(),
+});
+const edgeSchema = z.strictObject({
+    root: z.string(),
+    architecture: z.string(),
+    loader: z.string(),
+    via: z.array(z.string()),
+    ...dependencySchema.shape,
+    candidates: z.array(candidateSchema),
+    resolution: z.strictObject({
+        status: z.enum(["resolved", "conditional", "unresolved", "undetermined"]),
+        image: z.string().nullable(),
+    }),
+    install_name_matches: z.boolean().nullable(),
+    /**
+     * The loader was reached through a conditional edge, so it might not load;
+     * this edge describes what happens only if it does.
+     */
+    loader_conditional: z.boolean(),
+});
+const findingSchema = z.strictObject({
+    kind: z.enum([
+        "required-load-unresolved",
+        "weak-load-unresolved",
+        "lazy-load-unresolved",
+        "earlier-rpath-candidate-absent",
+        "dyld-environment-present",
+    ]),
+    edge_index: z.number().int().nonnegative().nullable(),
+    image: z.string().nullable(),
+    basis: z.literal("derived"),
+    explanation: z.string().min(1),
+});
+const imageSchema = z.strictObject({
+    path: z.string(),
+    sha256: digestSchema,
+    parse_status: z.enum(["parsed", "malformed", "unsupported"]),
+    reason: z.string().nullable(),
+    slices: z.array(machoSliceSchema.omit({ dependencies: true })),
+});
+/** Static dyld load-path resolution for every selected process root. */
+export const dylibResolutionResultSchema = z.strictObject({
+    root_path: z.string(),
+    target_sha256: digestSchema,
+    roots: z.array(z.strictObject({ image: z.string(), architecture: z.string() })),
+    images: z.array(imageSchema),
+    edges: z.array(edgeSchema),
+    findings: z.array(findingSchema),
+    coverage: z.strictObject({
+        status: z.enum(["complete", "partial"]),
+        unparsed_images: z.array(z.string()),
+        roots_without_architecture: z.array(z.string()),
+    }),
+    limitations: z.array(z.string().min(1)),
+});
+const candidateTemplates = (dependency, loader, context) => {
+    const name = dependency.install_name;
+    if (!name.startsWith("@rpath/")) {
+        const source = name.startsWith("@executable_path")
+            ? "executable_path"
+            : name.startsWith("@loader_path")
+                ? "loader_path"
+                : "literal";
+        return [
+            {
+                expansion: expandPrefix(name, {
+                    ownerDirectory: directoryOf(loader),
+                    executable: context.executable,
+                }),
+                source,
+                rpath: null,
+                rpathOwner: null,
+            },
+        ];
+    }
+    const rest = name.slice("@rpath/".length);
+    const owners = [...(context.loaded.get(loader)?.chain ?? [loader])].reverse();
+    return owners.flatMap((owner) => (context.loaded.get(owner)?.slice.rpaths ?? []).map((rpath) => {
+        const base = expandPrefix(rpath, {
+            ownerDirectory: directoryOf(owner),
+            executable: context.executable,
+        });
+        const expansion = {
+            scope: base.scope,
+            path: base.scope === "outside"
+                ? `${base.path.replace(/\/+$/u, "")}/${rest}`
+                : joinPath(base.path, rest),
+        };
+        return { expansion, source: "rpath", rpath, rpathOwner: owner };
+    }));
+};
+const evaluateCandidate = async (template, context) => {
+    const base = {
+        path: template.expansion.path,
+        source: template.source,
+        rpath: template.rpath,
+        rpath_owner: template.rpathOwner,
+    };
+    if (template.expansion.scope === "outside")
+        return { ...base, outcome: "outside-target", resolved_path: null };
+    if (template.expansion.scope === "undetermined")
+        return { ...base, outcome: "undetermined", resolved_path: null };
+    const lookup = await resolveTreePath(context.view, template.expansion.path);
+    if (lookup.kind === "escapes")
+        return { ...base, outcome: "escapes-target", resolved_path: null };
+    if (lookup.kind !== "file")
+        return { ...base, outcome: "absent", resolved_path: null };
+    const facts = await imageFacts(context, lookup.path);
+    let outcome;
+    if (facts.status !== "parsed")
+        outcome = facts.status;
+    else {
+        const slice = compatibleSlice(facts.slices, context.architecture);
+        if (slice === undefined)
+            outcome = "architecture-missing";
+        // Dependency commands require a dylib; generic dyld image loadability
+        // also admits main executables and bundles for different operations.
+        else if (slice.file_type_code !== 6)
+            outcome = "not-loadable";
+        else {
+            const platformResult = platformLoadability(context.platforms, slice.platforms, slice.file_type_code, context.architecture);
+            outcome =
+                platformResult === "compatible"
+                    ? "resolved"
+                    : platformResult === "incompatible"
+                        ? "platform-mismatch"
+                        : "undetermined";
+        }
+    }
+    return { ...base, outcome, resolved_path: lookup.path };
+};
+/** Apply dyld's documented cross-platform load cases and retain uncertain host cases. */
+const platformLoadability = (processPlatforms, imagePlatforms, fileType, architecture) => {
+    if (processPlatforms.length === 0 || imagePlatforms.length === 0)
+        return "unknown";
+    const outcomes = processPlatforms.map((processPlatform) => imageLoadabilityForPlatform(processPlatform, imagePlatforms, fileType, architecture));
+    if (outcomes.every((outcome) => outcome === "compatible"))
+        return "compatible";
+    if (outcomes.every((outcome) => outcome === "incompatible"))
+        return "incompatible";
+    return "unknown";
+};
+const imageLoadabilityForPlatform = (processPlatform, imagePlatforms, fileType, architecture) => {
+    if (imagePlatforms.includes(processPlatform))
+        return "compatible";
+    // These are explicit dyld loadableIntoProcess cross-platform cases.
+    if (processPlatform === 6 && imagePlatforms.includes(1))
+        return "compatible"; // macOS dylibs in Mac Catalyst processes
+    if (processPlatform === 2 && imagePlatforms.includes(6))
+        return "compatible"; // Catalyst dylibs in iOS processes
+    if (processPlatform === 2 && imagePlatforms.includes(11))
+        return "compatible"; // visionOS dylibs in iOS processes
+    if (processPlatform === 7 && imagePlatforms.includes(12))
+        return "compatible"; // visionOS simulator dylibs in iOS simulator processes
+    if (processPlatform === 1 && fileType === 2 && imagePlatforms.includes(6))
+        return "compatible"; // Catalyst main executables run on macOS
+    // dyld's remaining exceptions depend on host architecture or a special path.
+    if ((processPlatform === 2 &&
+        imagePlatforms.includes(1) &&
+        architecture.startsWith("arm64")) ||
+        ([7, 8, 9].includes(processPlatform) && imagePlatforms.includes(1)))
+        return "unknown";
+    if (isKnownPlatform(processPlatform) && imagePlatforms.every(isKnownPlatform))
+        return "incompatible";
+    return "unknown";
+};
+const isKnownPlatform = (platform) => platform >= 1 && platform <= 12;
+const imageFacts = async (context, path) => {
+    const known = context.images.get(path);
+    if (known !== undefined)
+        return known;
+    const facts = await context.view.image(path);
+    context.images.set(path, facts);
+    return facts;
+};
+const resolution = (candidates) => {
+    let external = false;
+    for (const candidate of candidates) {
+        if (candidate.outcome === "resolved")
+            return {
+                status: external ? "conditional" : "resolved",
+                image: candidate.resolved_path,
+            };
+        // dyld might load these; REA cannot decide them from the analyzed root.
+        if (candidate.outcome === "outside-target" ||
+            candidate.outcome === "escapes-target" ||
+            candidate.outcome === "unsupported" ||
+            candidate.outcome === "undetermined")
+            external = true;
+    }
+    return { status: external ? "undetermined" : "unresolved", image: null };
+};
+const resolveDependency = async (dependency, loader, context) => {
+    const current = context.loaded.get(loader);
+    const chain = current?.chain ?? [loader];
+    const loaded = context.byInstallName.get(dependency.install_name);
+    const candidates = [];
+    if (loaded !== undefined)
+        candidates.push({
+            path: dependency.install_name,
+            source: "already-loaded",
+            rpath: null,
+            rpath_owner: null,
+            outcome: "resolved",
+            resolved_path: loaded,
+        });
+    else
+        for (const template of candidateTemplates(dependency, loader, context)) {
+            const candidate = await evaluateCandidate(template, context);
+            candidates.push(candidate);
+            // dyld stops at the first loadable candidate.
+            if (candidate.outcome === "resolved")
+                break;
+        }
+    const modeled = resolution(candidates);
+    const searchUnknown = loaded === undefined &&
+        hasApplicableDyldOverrides(context.searchOverrides, dependency.install_name, modeled.image !== null);
+    if (searchUnknown)
+        context.environmentRoots.add(context.root);
+    // Fallbacks cannot preempt a modeled hit, and framework paths do not
+    // override ordinary dylibs. Reuse inherits uncertainty from the first load.
+    const searched = searchUnknown
+        ? {
+            ...modeled,
+            status: modeled.image === null ? "undetermined" : "conditional",
+        }
+        : modeled;
+    // Reusing an image that itself loads only conditionally is conditional too.
+    const resolved = loaded !== undefined &&
+        context.loaded.get(loaded)?.conditional === true &&
+        searched.status === "resolved"
+        ? { ...searched, status: "conditional" }
+        : searched;
+    const image = resolved.image === null ? undefined : context.images.get(resolved.image);
+    const slice = image?.status === "parsed"
+        ? compatibleSlice(image.slices, context.architecture)
+        : undefined;
+    return {
+        root: context.root,
+        architecture: context.architecture,
+        loader,
+        via: [...chain],
+        ...dependency,
+        candidates,
+        resolution: resolved,
+        install_name_matches: slice === undefined || slice.install_name === null
+            ? null
+            : slice.install_name === dependency.install_name,
+        loader_conditional: current?.conditional ?? false,
+    };
+};
+/**
+ * Follow dyld4's dependents-first order: resolve every dependency of one
+ * image, then recurse into the images it newly loaded, in load-command order.
+ */
+const traceProcess = async (context, rootSlice, signal) => {
+    const edges = [];
+    context.loaded.set(context.root, {
+        slice: rootSlice,
+        chain: [context.root],
+        conditional: false,
+    });
+    if (rootSlice.install_name !== null)
+        context.byInstallName.set(rootSlice.install_name, context.root);
+    const pending = [context.root];
+    while (pending.length > 0) {
+        signal?.throwIfAborted();
+        const loader = pending.pop() ?? "";
+        const current = context.loaded.get(loader);
+        if (current === undefined)
+            continue;
+        const created = [];
+        for (const dependency of current.slice.dependencies) {
+            const edge = await resolveDependency(dependency, loader, context);
+            edges.push(edge);
+            // dyld loads LC_LAZY_LOAD_DYLIB images on first use, not at launch.
+            if (dependency.command === "LC_LAZY_LOAD_DYLIB")
+                continue;
+            const image = edge.resolution.image;
+            if (image === null || context.loaded.has(image))
+                continue;
+            const facts = context.images.get(image);
+            const slice = facts?.status === "parsed"
+                ? compatibleSlice(facts.slices, context.architecture)
+                : undefined;
+            if (slice === undefined)
+                continue;
+            context.loaded.set(image, {
+                slice,
+                chain: [...current.chain, image],
+                // dyld may load an unknown earlier candidate instead of this fallback.
+                conditional: current.conditional || edge.resolution.status === "conditional",
+            });
+            if (slice.install_name !== null &&
+                !context.byInstallName.has(slice.install_name))
+                context.byInstallName.set(slice.install_name, image);
+            created.push(image);
+        }
+        pending.push(...created.reverse());
+    }
+    return edges;
+};
+/** Trace dyld load paths from each process root through the analyzed root. */
+export const traceDylibLoading = async (view, request) => {
+    const images = new Map();
+    for (const path of request.unclassified ?? [])
+        images.set(path, await view.image(path));
+    const roots = [];
+    const edges = [];
+    const withoutArchitecture = [];
+    const environmentRoots = new Set();
+    for (const root of request.roots) {
+        const facts = await view.image(root);
+        images.set(root, facts);
+        if (facts.status !== "parsed")
+            continue;
+        const slices = facts.slices.filter(({ architecture }) => request.architecture === undefined ||
+            architecture === request.architecture);
+        if (slices.length === 0)
+            withoutArchitecture.push(root);
+        for (const slice of slices) {
+            const executable = slice.file_type === "execute" ? root : null;
+            // Only the main executable supplies the process's embedded environment.
+            const searchOverrides = executable === null
+                ? []
+                : embeddedDyldOverrides(slice.dyld_environment, slice.platforms);
+            // Inserted libraries introduce unexamined images even without dependencies.
+            if (searchOverrides.some(({ variable, value }) => variable === "DYLD_INSERT_LIBRARIES" && value !== ""))
+                environmentRoots.add(root);
+            roots.push({ image: root, architecture: slice.architecture });
+            edges.push(...(await traceProcess({
+                view,
+                root,
+                architecture: slice.architecture,
+                searchOverrides,
+                environmentRoots,
+                platforms: slice.platforms,
+                executable,
+                loaded: new Map(),
+                byInstallName: new Map(),
+                images,
+            }, slice, request.signal)));
+        }
+    }
+    const reported = [...images.entries()]
+        .filter(([, facts]) => facts.status !== "not-mach-o")
+        .sort(([left], [right]) => compare(left, right));
+    const unparsed = reported
+        .filter(([, facts]) => facts.status !== "parsed")
+        .map(([path]) => path);
+    return {
+        roots,
+        images: reported.map(([path, facts]) => ({
+            path,
+            parse_status: facts.status === "not-mach-o" ? "unsupported" : facts.status,
+            reason: facts.status === "parsed" || facts.status === "not-mach-o"
+                ? null
+                : facts.reason,
+            slices: facts.status === "parsed" ? facts.slices.map(withoutDependencies) : [],
+        })),
+        edges,
+        findings: deriveFindings(edges, roots, images),
+        coverage: {
+            status: unparsed.length === 0 &&
+                withoutArchitecture.length === 0 &&
+                environmentRoots.size === 0
+                ? "complete"
+                : "partial",
+            unparsed_images: unparsed,
+            roots_without_architecture: withoutArchitecture,
+        },
+        limitations: [
+            ...DYLIB_RESOLUTION_LIMITATIONS,
+            ...(environmentRoots.size === 0
+                ? []
+                : [
+                    `Roots ${[...environmentRoots].join(", ")} request applicable image-selection inputs through LC_DYLD_ENVIRONMENT that are not modeled; affected dependencies or inserted images remain uncertain.`,
+                ]),
+        ],
+    };
+};
+const withoutDependencies = (slice) => ({
+    architecture: slice.architecture,
+    slice_offset: slice.slice_offset,
+    slice_size: slice.slice_size,
+    cpu_type: slice.cpu_type,
+    cpu_subtype: slice.cpu_subtype,
+    fat_cpu_type: slice.fat_cpu_type,
+    fat_cpu_subtype: slice.fat_cpu_subtype,
+    fat_alignment_exponent: slice.fat_alignment_exponent,
+    file_type: slice.file_type,
+    file_type_code: slice.file_type_code,
+    platform: slice.platform,
+    platforms: slice.platforms,
+    install_name: slice.install_name,
+    rpaths: slice.rpaths,
+    dyld_environment: slice.dyld_environment,
+    code_signature_present: slice.code_signature_present,
+});
+const compare = (left, right) => left < right ? -1 : left > right ? 1 : 0;

package/dist/domain/apple/dylibResolutionFindings.js

@@ -0,0 +1,77 @@
+export const deriveFindings = (edges, roots, images) => {
+    const findings = [];
+    edges.forEach((edge, index) => {
+        if (edge.resolution.status === "unresolved")
+            findings.push(unresolvedFinding(edge, index));
+        const resolvedAt = edge.candidates.findIndex(({ outcome }) => outcome === "resolved");
+        const earlier = edge.candidates
+            .slice(0, Math.max(resolvedAt, 0))
+            .filter(({ source, outcome }) => source === "rpath" && outcome === "absent")
+            .map(({ path }) => path);
+        if (resolvedAt > 0 && earlier.length > 0)
+            findings.push({
+                kind: "earlier-rpath-candidate-absent",
+                edge_index: index,
+                image: edge.loader,
+                basis: "derived",
+                explanation: `The modeled dyld search checks ${earlier.join(", ")} before ${edge.resolution.image ?? edge.install_name}. A compatible Mach-O placed at an earlier modeled path could take precedence over that fallback, subject to unmodeled search inputs and code-signing library validation; library validation is not evaluated here (see inspect_signature).${edge.loader_conditional ? " This loader loads only conditionally; if it never loads, this search never occurs." : ""}${edge.resolution.status === "conditional" ? " Unmodeled environment overrides or earlier unknown candidates may take precedence; placing an image at this rpath does not establish which image dyld will load." : ""}`,
+            });
+    });
+    for (const { image, architecture } of roots) {
+        const facts = images.get(image);
+        const slice = facts?.status === "parsed"
+            ? facts.slices.find((candidate) => candidate.architecture === architecture)
+            : undefined;
+        const environment = slice?.dyld_environment ?? [];
+        if (environment.length > 0)
+            findings.push({
+                kind: "dyld-environment-present",
+                edge_index: null,
+                image,
+                basis: "derived",
+                explanation: slice?.file_type === "execute"
+                    ? `${image} (${architecture}) sets dyld environment variables through LC_DYLD_ENVIRONMENT (${environment.join(", ")}); any image-selection overrides they request are not modeled. Diagnostic settings alone do not alter resolution.`
+                    : `${image} (${architecture}) contains LC_DYLD_ENVIRONMENT (${environment.join(", ")}). Dyld reads these commands only from the main executable; entries in this non-executable root are observations and do not alter resolution.`,
+            });
+    }
+    return findings;
+};
+const unresolvedFinding = (edge, index) => {
+    const base = {
+        edge_index: index,
+        image: edge.loader,
+        basis: "derived",
+    };
+    const missing = `No candidate for ${edge.command === "LC_LAZY_LOAD_DYLIB" ? "lazily loaded " : edge.weak ? "weak dependency " : ""}${edge.install_name} exists in the analyzed root`;
+    // Below a conditional fallback, every consequence applies only if it loads.
+    const when = edge.loader_conditional
+        ? `. ${edge.loader} loads only conditionally; if it loads, `
+        : "; ";
+    if (edge.command === "LC_LAZY_LOAD_DYLIB")
+        return {
+            ...base,
+            kind: "lazy-load-unresolved",
+            explanation: `${missing}${when}dyld loads it on first use, which would fail unless the image is supplied elsewhere.`,
+        };
+    return edge.weak
+        ? {
+            ...base,
+            kind: "weak-load-unresolved",
+            explanation: `${missing}${when}dyld continues without it.`,
+        }
+        : {
+            ...base,
+            kind: "required-load-unresolved",
+            explanation: `${missing}${when}dyld would fail to load this required dependency for ${edge.root} (${edge.architecture}) unless the image is supplied elsewhere.`,
+        };
+};
+export const DYLIB_RESOLUTION_LIMITATIONS = [
+    "LC_LAZY_LOAD_DYLIB dependencies are resolved but not traversed, because dyld loads them only on first use.",
+    "Slices are matched by dyld's graded architectures (an x86_64h process also loads x86_64). arm64e processes that disable pointer authentication can also load arm64 slices; that fallback is not modeled.",
+    "Absolute install names and rpaths are outside the analyzed root and are not evaluated, including /System and /usr/lib libraries that the dyld shared cache usually provides.",
+    "Leaf and relative install names depend on dyld fallback paths, DYLD_* variables, and the working directory; they are undetermined.",
+    "Load order follows dyld's dependents-first traversal in load-command order. An image reached through several chains is resolved once per process, with the rpath stack and conditionality of the first chain; a later request whose install name matches an already loaded image reuses it.",
+    "@loader_path uses each image's symlink-resolved path within the analyzed root.",
+    "Code-signing checks that can reject a found image, such as library validation and the hardened runtime, are not evaluated.",
+    "Dylib compatibility versions are not compared. Apple's linker documentation describes a load-time rejection when an image's compatibility version is older than the loader requires, but dyld on macOS 26 was observed to load such an image.",
+];

package/dist/domain/apple/interfaceBuilderGraph.js

@@ -28,6 +28,7 @@ export const buildInterfaceBuilderAnalysis = (input) => {
     let omittedObjects = 0;
     let omittedConnections = 0;
     let omittedGraphNodes = 0;
+    let omittedHierarchyReferences = 0;
     for (const document of input.documents.slice(0, input.limits.max_documents)) {
         const parsed = parseInterfaceBuilderRecords(document.raw);
         const prefix = `ib:${document.relativePath}:`;
@@ -276,6 +277,8 @@ export const buildInterfaceBuilderAnalysis = (input) => {
             }
         }
         const objectsTruncated = parsed.omittedObjects > 0 || parsed.objects.length > documentObjectCount;
+        const parserOmittedHierarchyReferences = parsed.omittedHierarchyReferences;
+        omittedHierarchyReferences += parserOmittedHierarchyReferences;
         const parserOmittedConnections = parsed.omittedConnections;
         const connectionsTruncated = parserOmittedConnections > 0 ||
             parsed.connections.length > input.limits.max_connections;
@@ -291,7 +294,9 @@ export const buildInterfaceBuilderAnalysis = (input) => {
             document_kind: document.documentKind,
             object_count: parsed.objectCount,
             connection_count: parsed.connections.length + parserOmittedConnections,
-            hierarchy_complete: parsed.hierarchy.length > 0 && !truncated,
+            hierarchy_complete: parsed.hierarchy.length > 0 &&
+                !truncated &&
+                parserOmittedHierarchyReferences === 0,
         });
         coverage.push({
             facet: `objects:${document.relativePath}`,
@@ -314,18 +319,22 @@ export const buildInterfaceBuilderAnalysis = (input) => {
                 parserOmittedConnections,
         }, {
             facet: `hierarchy:${document.relativePath}`,
-            status: parsed.hierarchy.length === 0
-                ? "unsupported"
-                : hierarchyTruncated || documentOmittedHierarchyEdges > 0
-                    ? "partial"
-                    : "complete",
-            reason: parsed.hierarchy.length === 0
-                ? "archive_hierarchy_not_decoded"
-                : hierarchyTruncated || documentOmittedHierarchyEdges > 0
-                    ? "graph_limit_reached"
-                    : null,
+            status: parserOmittedHierarchyReferences > 0
+                ? "partial"
+                : parsed.hierarchy.length === 0
+                    ? "unsupported"
+                    : hierarchyTruncated || documentOmittedHierarchyEdges > 0
+                        ? "partial"
+                        : "complete",
+            reason: parserOmittedHierarchyReferences > 0
+                ? "archive_hierarchy_references_missing"
+                : parsed.hierarchy.length === 0
+                    ? "archive_hierarchy_not_decoded"
+                    : hierarchyTruncated || documentOmittedHierarchyEdges > 0
+                        ? "graph_limit_reached"
+                        : null,
             examined: hierarchyCount,
-            omitted: documentOmittedHierarchyEdges,
+            omitted: documentOmittedHierarchyEdges + parserOmittedHierarchyReferences,
         }, {
             facet: `classes:${document.relativePath}`,
             status: Object.keys(parsed.classes).length > 0 ? "complete" : "unsupported",
@@ -367,7 +376,10 @@ export const buildInterfaceBuilderAnalysis = (input) => {
             nodes: [...nodes.values()],
             edges,
             coverage,
-            truncated: truncated || omittedObjects > 0 || omittedConnections > 0,
+            truncated: truncated ||
+                omittedObjects > 0 ||
+                omittedConnections > 0 ||
+                omittedHierarchyReferences > 0,
         },
         limitations: [
             "The graph reflects recognized Interface Builder archive fields and connections; omitted private or unrecognized archive fields remain unknown.",