protvista-uniprot 2.13.2 → 3.0.0

package/dist/es/protvista-uniprot-structure.js.map

@@ -1 +1 @@
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package/dist/es/protvista-uniprot.d.ts

@@ -1,99 +1,4 @@
 import { LitElement } from 'lit';
-import _ProtvistaUniprotStructure from './protvista-uniprot-structure';
-export declare const transformDataFeatureAdapter: any;
-export declare const transformDataProteomicsAdapter: any;
-export declare const transformDataStructureAdapter: any;
-export declare const transformDataVariationAdapter: (data: import("protvista-variation-adapter/dist/es/variants").ProteinsAPIVariation) => {
-    sequence: string;
-    variants: any[];
-};
-export declare const transformDataVariationGraphAdapter: (data: any) => {
-    name: string;
-    range: number[];
-    color: string;
-    values: {
-        position: number;
-        value: number;
-    }[];
-}[];
-export declare const transformDataInterproAdapter: any;
-export declare const transformDataProteomicsPTMApdapter: (data: {
-    accession: string;
-    entryName: string;
-    sequence: string;
-    sequenceChecksum: string;
-    taxid: number;
-    features: {
-        type: string;
-        begin: string;
-        end: string;
-        xrefs: {
-            name: string;
-            id: string;
-            url: string;
-        }[];
-        evidences: {
-            code: string;
-            source: {
-                id: string;
-                url: string;
-            };
-        }[];
-        peptide: string;
-        unique: boolean;
-        ptms: {
-            name: string;
-            position: number;
-            sources: string[];
-            dbReferences: {
-                id: string;
-                properties: {
-                    [key: string]: string;
-                };
-            }[];
-        }[];
-    }[];
-}) => {
-    source: string;
-    type: string;
-    start: number;
-    end: number;
-    shape: string;
-    tooltipContent: string;
-    color: any;
-}[];
-export declare const transformDataAlphaFoldConfidenceAdapter: (data: import("./commonTypes").AlphafoldPayload, protein: {
-    sequence: {
-        sequence: string;
-    };
-}) => Promise<string>;
-export declare const transformDataAlphaMissensePathogenicityAdapter: (data: import("./commonTypes").AlphafoldPayload, protein: {
-    sequence: {
-        sequence: string;
-    };
-}) => Promise<string>;
-export declare const transformDataAlphaMissenseHeatmapAdapter: (data: import("./commonTypes").AlphafoldPayload, protein: {
-    sequence: {
-        sequence: string;
-    };
-}) => Promise<Record<string, string>[]>;
-export declare const filterConfig: {
-    name: string;
-    type: {
-        name: string;
-        text: string;
-    };
-    options: {
-        label: string;
-        color: string;
-    };
-    filterPredicate: (variantPos: any) => any;
-    filterData: (variants: ProtvistaVariationData) => {
-        variants: ProtvistaVariant[];
-    }[];
-}[];
-export declare const colorConfig: (variant: any) => string;
-export declare const ProtvistaUniprotStructure: typeof _ProtvistaUniprotStructure;
 type TrackType = 'nightingale-track' | 'nightingale-interpro-track' | 'nightingale-colored-sequence' | 'nightingale-variation' | 'nightingale-linegraph-track' | 'nightingale-sequence-heatmap';
 type ProtvistaTrackConfig = {
     name: string;
@@ -103,7 +8,7 @@ type ProtvistaTrackConfig = {
     trackType: TrackType;
     data: {
         url: string | string[];
-        adapter?: 'protvista-feature-adapter' | 'protvista-structure-adapter' | 'protvista-proteomics-adapter' | 'protvista-variation-adapter' | 'protvista-variation-graph-adapter' | 'protvista-interpro-adapter' | 'protvista-alphafold-confidence-adapter' | 'protvista-alphamissense-pathogenicity-adapter' | 'protvista-alphamissense-heatmap-adapter';
+        adapter?: 'feature-adapter' | 'structure-adapter' | 'proteomics-adapter' | 'variation-adapter' | 'variation-graph-adapter' | 'interpro-adapter' | 'alphafold-confidence-adapter' | 'alphamissense-pathogenicity-adapter' | 'alphamissense-heatmap-adapter';
     }[];
     tooltip: string;
     color?: string;
@@ -112,10 +17,6 @@ type ProtvistaTrackConfig = {
     filterComponent?: 'nightingale-filter';
     'color-range'?: string;
 };
-export type DownloadConfig = {
-    type: string;
-    url: string;
-}[];
 declare class ProtvistaUniprot extends LitElement {
     private openCategories;
     private nostructure;

package/dist/es/protvista-uniprot.js

@@ -1,4 +1,12 @@
+var __decorate = (this && this.__decorate) || function (decorators, target, key, desc) {
+    var c = arguments.length, r = c < 3 ? target : desc === null ? desc = Object.getOwnPropertyDescriptor(target, key) : desc, d;
+    if (typeof Reflect === "object" && typeof Reflect.decorate === "function") r = Reflect.decorate(decorators, target, key, desc);
+    else for (var i = decorators.length - 1; i >= 0; i--) if (d = decorators[i]) r = (c < 3 ? d(r) : c > 3 ? d(target, key, r) : d(target, key)) || r;
+    return c > 3 && r && Object.defineProperty(target, key, r), r;
+};
 import { LitElement, html, svg } from 'lit';
+// eslint-disable-next-line @typescript-eslint/no-unused-vars
+import { customElement } from 'lit/decorators.js';
 import { unsafeHTML } from 'lit/directives/unsafe-html.js';
 import { frame } from 'timing-functions';
 // Nightingale
@@ -12,51 +20,37 @@ import NightingaleVariation from '@nightingale-elements/nightingale-variation';
 import NightingaleLinegraphTrack from '@nightingale-elements/nightingale-linegraph-track';
 import NightingaleSequenceHeatmap from '@nightingale-elements/nightingale-sequence-heatmap';
 import NightingaleFilter from '@nightingale-elements/nightingale-filter';
-import { load } from 'data-loader';
 // adapters
-import { transformData as _transformDataFeatureAdapter } from 'protvista-feature-adapter';
-import { transformData as _transformDataProteomicsAdapter } from 'protvista-proteomics-adapter';
-import { transformData as _transformDataStructureAdapter } from 'protvista-structure-adapter';
-import { transformData as _transformDataVariationAdapter, } from 'protvista-variation-adapter';
-import { transformData as _transformDataVariationGraphAdapter } from './protvista-variation-graph-adapter';
-import { transformData as _transformDataInterproAdapter } from 'protvista-interpro-adapter';
-import { transformData as _transformDataProteomicsPTMApdapter } from './protvista-ptm-exchange';
-import { transformData as _transformDataAlphaFoldConfidenceAdapter } from './protvista-alphafold-confidence';
-import { transformData as _transformDataAlphaMissensePathogenicityAdapter } from './protvista-alphamissense-pathogenicity';
-import { transformData as _transformDataAlphaMissenseHeatmapAdapter } from './protvista-alphamissense-heatmap';
+import featureAdapter from './adapters/feature-adapter';
+import proteomicsAdapter from './adapters/proteomics-adapter';
+import structureAdapter from './adapters/structure-adapter';
+import variationAdapter from './adapters/variation-adapter';
+import interproAdapter from './adapters/interpro-adapter';
+import variationGraphAdapter from './adapters/variation-graph-adapter';
+import proteomicsPTMApdapter from './adapters/ptm-exchange-adapter';
+import alphaFoldConfidenceAdapter from './adapters/alphafold-confidence-adapter';
+import alphaMissensePathogenicityAdapter from './adapters/alphamissense-pathogenicity-adapter';
+import alphaMissenseHeatmapAdapter from './adapters/alphamissense-heatmap-adapter';
+import ProtvistaUniprotStructure from './protvista-uniprot-structure';
+import { fetchAll, loadComponent } from './utils';
+import filterConfig, { colorConfig } from './filter-config';
 import defaultConfig from './config.json';
-import _ProtvistaUniprotStructure from './protvista-uniprot-structure';
-import { loadComponent } from './loadComponents';
-import _filterConfig, { colorConfig as _colorConfig } from './filterConfig';
 import loaderIcon from './icons/spinner.svg';
 import protvistaStyles from './styles/protvista-styles';
 import loaderStyles from './styles/loader-styles';
-export const transformDataFeatureAdapter = _transformDataFeatureAdapter;
-export const transformDataProteomicsAdapter = _transformDataProteomicsAdapter;
-export const transformDataStructureAdapter = _transformDataStructureAdapter;
-export const transformDataVariationAdapter = _transformDataVariationAdapter;
-export const transformDataVariationGraphAdapter = _transformDataVariationGraphAdapter;
-export const transformDataInterproAdapter = _transformDataInterproAdapter;
-export const transformDataProteomicsPTMApdapter = _transformDataProteomicsPTMApdapter;
-export const transformDataAlphaFoldConfidenceAdapter = _transformDataAlphaFoldConfidenceAdapter;
-export const transformDataAlphaMissensePathogenicityAdapter = _transformDataAlphaMissensePathogenicityAdapter;
-export const transformDataAlphaMissenseHeatmapAdapter = _transformDataAlphaMissenseHeatmapAdapter;
-export const filterConfig = _filterConfig;
-export const colorConfig = _colorConfig;
-export const ProtvistaUniprotStructure = _ProtvistaUniprotStructure;
 const adapters = {
-    'protvista-feature-adapter': transformDataFeatureAdapter,
-    'protvista-interpro-adapter': transformDataInterproAdapter,
-    'protvista-proteomics-adapter': transformDataProteomicsAdapter,
-    'protvista-structure-adapter': transformDataStructureAdapter,
-    'protvista-variation-adapter': transformDataVariationAdapter,
-    'protvista-variation-graph-adapter': transformDataVariationGraphAdapter,
-    'protvista-proteomics-ptm-adapter': transformDataProteomicsPTMApdapter,
-    'protvista-alphafold-confidence-adapter': transformDataAlphaFoldConfidenceAdapter,
-    'protvista-alphamissense-pathogenicity-adapter': transformDataAlphaMissensePathogenicityAdapter,
-    'protvista-alphamissense-heatmap-adapter': transformDataAlphaMissenseHeatmapAdapter,
+    'feature-adapter': featureAdapter,
+    'interpro-adapter': interproAdapter,
+    'proteomics-adapter': proteomicsAdapter,
+    'structure-adapter': structureAdapter,
+    'variation-adapter': variationAdapter,
+    'variation-graph-adapter': variationGraphAdapter,
+    'proteomics-ptm-adapter': proteomicsPTMApdapter,
+    'alphafold-confidence-adapter': alphaFoldConfidenceAdapter,
+    'alphamissense-pathogenicity-adapter': alphaMissensePathogenicityAdapter,
+    'alphamissense-heatmap-adapter': alphaMissenseHeatmapAdapter,
 };
-class ProtvistaUniprot extends LitElement {
+let ProtvistaUniprot = class ProtvistaUniprot extends LitElement {
     constructor() {
         super();
         this.displayCoordinates = {};
@@ -101,7 +95,7 @@ class ProtvistaUniprot extends LitElement {
         loadComponent('nightingale-linegraph-track', NightingaleLinegraphTrack);
         loadComponent('nightingale-filter', NightingaleFilter);
         loadComponent('nightingale-manager', NightingaleManager);
-        loadComponent('protvista-uniprot-structure', _ProtvistaUniprotStructure);
+        loadComponent('protvista-uniprot-structure', ProtvistaUniprotStructure);
         loadComponent('nightingale-sequence-heatmap', NightingaleSequenceHeatmap);
     }
     async _loadData() {
@@ -109,22 +103,12 @@ class ProtvistaUniprot extends LitElement {
         if (accession && this.config) {
             // Get the list of unique urls
             const urls = this.config.categories.flatMap(({ tracks }) => tracks.flatMap(({ data }) => data[0].url));
-            const uniqueUrls = [...new Set(urls)];
             // Get the data for all urls and store it
-            await Promise.all(uniqueUrls.map((url) => load(url.replace('{accession}', accession))
-                .then((data) => {
-                var _a, _b;
-                this.rawData[url] = data.payload;
-                // Some endpoints return empty arrays, while most fail 🙄
-                if (!this.hasData && ((_b = (_a = data.payload) === null || _a === void 0 ? void 0 : _a.features) === null || _b === void 0 ? void 0 : _b.length))
-                    this.hasData = true;
-            }, 
-            // TODO handle this better based on error code
-            // Fail silently for now
-            (error) => console.warn(error))
-                .catch((e) => {
-                console.log(e);
-            })));
+            this.rawData = await fetchAll([...new Set(urls)], (url) => url.replace('{accession}', accession));
+            // Some endpoints return empty arrays, while most fail 🙄
+            this.hasData =
+                this.hasData ||
+                    Object.values(this.rawData).some((d) => { var _a; return !!((_a = d === null || d === void 0 ? void 0 : d.features) === null || _a === void 0 ? void 0 : _a.length); });
             // Now iterate over tracks and categories, transforming the data
             // and assigning it as adequate
             for (const { name: categoryName, tracks, trackType } of this.config
@@ -133,15 +117,14 @@ class ProtvistaUniprot extends LitElement {
                     const { url, adapter } = dataConfig[0]; // TODO handle array
                     const trackData = (Array.isArray(url) ? url : [url]).map((url) => this.rawData[url] || []);
                     if (!trackData ||
-                        (adapter === 'protvista-variation-adapter' &&
-                            trackData[0].length === 0)) {
+                        (adapter === 'variation-adapter' && trackData[0].length === 0)) {
                         return;
                     }
                     // 1. Convert data
                     let transformedData = adapter
-                        ? await adapters[adapter](...trackData)
+                        ? await adapters[adapter].apply(null, trackData)
                         : trackData;
-                    if (adapter === 'protvista-interpro-adapter') {
+                    if (adapter === 'interpro-adapter') {
                         const representativeDomains = [];
                         transformedData === null || transformedData === void 0 ? void 0 : transformedData.forEach((feature) => {
                             var _a;
@@ -199,7 +182,7 @@ class ProtvistaUniprot extends LitElement {
                 currentCategory.tracks &&
                 data &&
                 // Check there's data and special case for variants
-                // NOTE: should refactor protvista-variation-adapter
+                // NOTE: should refactor variation-adapter
                 // to return a list of variants and set the sequence
                 // on protvista-variation separately
                 (data.length > 0 || ((_b = data.variants) === null || _b === void 0 ? void 0 : _b.length))) {
@@ -603,6 +586,9 @@ class ProtvistaUniprot extends LitElement {
                 break;
         }
     }
-}
+};
+ProtvistaUniprot = __decorate([
+    customElement('protvista-uniprot')
+], ProtvistaUniprot);
 export default ProtvistaUniprot;
 //# sourceMappingURL=protvista-uniprot.js.map

package/dist/es/protvista-uniprot.js.map

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package/dist/es/styles/protvista-styles.js

@@ -24,7 +24,8 @@ export default css `
   .track-label,
   .nav-track-label,
   .credits {
-    width: 20vw;
+    min-width: 20vw;
+    max-width: 20vw;
     padding: 0.5em;
     line-height: normal;
   }

package/dist/es/styles/protvista-styles.js.map

@@ -1 +1 @@
-{"version":3,"file":"protvista-styles.js","sourceRoot":"","sources":["../../../src/styles/protvista-styles.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,GAAG,EAAE,MAAM,KAAK,CAAC;AAE1B,eAAe,GAAG,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAqFjB,CAAC"}
+{"version":3,"file":"protvista-styles.js","sourceRoot":"","sources":["../../../src/styles/protvista-styles.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,GAAG,EAAE,MAAM,KAAK,CAAC;AAE1B,eAAe,GAAG,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAsFjB,CAAC"}

package/dist/es/tooltips/featureTooltip.d.ts

@@ -0,0 +1,4 @@
+export declare const getEvidenceFromCodes: (evidenceList: any) => string;
+export declare const formatXrefs: (xrefs: any) => string;
+declare const formatTooltip: (feature: any) => string;
+export default formatTooltip;

package/dist/es/tooltips/featureTooltip.js

@@ -0,0 +1,160 @@
+import ecoMap from '../adapters/config/evidence';
+const formatSource = (source) => {
+    var _a;
+    if (((_a = source.name) === null || _a === void 0 ? void 0 : _a.toLowerCase()) === 'PubMed'.toLowerCase()) {
+        return `${source.id}&nbsp;(<a href='${source.url}' style="color:#FFF" target='_blank'>${source.name}</a>&nbsp;<a href='${source.alternativeUrl}' style="color:#FFF" target='_blank'>EuropePMC</a>)`;
+    }
+    const sourceLink = `&nbsp;<a href='${source.url}' style="color:#FFF" target='_blank'>${source.id}</a>`;
+    if (source.name) {
+        // Temporary until we get the expected value as 'PeptideAtlas' instead of 'HppPeptideAtlas'
+        if (source.name.startsWith('Hpp')) {
+            return `${sourceLink}&nbsp;(${source.name.slice(3)})`;
+        }
+        return `${sourceLink}&nbsp;(${source.name})`;
+    }
+    return sourceLink;
+};
+export const getEvidenceFromCodes = (evidenceList) => {
+    if (!evidenceList)
+        return ``;
+    return `
+        <ul>${evidenceList
+        .map((ev) => {
+        const ecoMatch = ecoMap.find((eco) => eco.name === ev.code);
+        if (!ecoMatch)
+            return ``;
+        return `<li title='${ecoMatch.description}' style="padding: .25rem 0">${ecoMatch.shortDescription}:&nbsp;${ev.source ? formatSource(ev.source) : ''}</li>`;
+    })
+        .join('')}</ul>
+      `;
+};
+export const formatXrefs = (xrefs) => {
+    return `<ul>${xrefs
+        .map((xref) => `<li style="padding: .25rem 0">${xref.name} ${xref.url
+        ? `<a href="${xref.url}" style="color:#FFF" target="_blank">${xref.id}</a>`
+        : `${xref.name} ${xref.id}`}</li>`)
+        .join('')}</ul>`;
+};
+const getPTMEvidence = (ptms) => {
+    if (!ptms)
+        return ``;
+    const ids = ptms.flatMap(({ dbReferences }) => dbReferences.map((ref) => ref.id));
+    const uniqueIds = [...new Set(ids.flat())];
+    // Urls in the payload are not relevant. For 'Glue project' dataset, Dataset ID and publication reference is hardcoded. Need to be checked in 2024 if it still exists in the payload
+    const proteomexchange = 'https://proteomecentral.proteomexchange.org/dataset/';
+    return `
+    <ul>${uniqueIds
+        .map((id) => {
+        const datasetID = id === 'Glue project' ? 'PXD012174' : id;
+        return `<li title='${datasetID}' style="padding: .25rem 0">${datasetID}&nbsp;(<a href="${proteomexchange}${datasetID}" style="color:#FFF" target="_blank">ProteomeXchange</a>${id === 'Glue project'
+            ? `)</li><li title="publication" style="padding: .25rem 0">Publication:&nbsp;31819260&nbsp;(<a href="https://pubmed.ncbi.nlm.nih.gov/31819260" style="color:#FFF" target="_blank">PubMed</a>)</li>`
+            : `&nbsp;<a href="http://www.peptideatlas.org/builds/rice/phospho/" style="color:#FFF" target="_blank">PeptideAtlas</a>)</li>`}`;
+    })
+        .join('')}</ul>
+  `;
+};
+const formatPTMPeptidoform = (peptide, ptms) => {
+    if (!ptms)
+        return ``;
+    const modificationValues = ptms.map((ptm) => ({
+        name: ptm.name,
+        position: ptm.position,
+    }));
+    let peptidoform = '';
+    let lastModPosition = 0;
+    modificationValues.forEach((p) => {
+        peptidoform = `${peptidoform}${peptide.slice(lastModPosition, p.position)}[${p.name}]`;
+        lastModPosition = p.position;
+    });
+    // Add last remaining part of the peptide if any
+    peptidoform = `${peptidoform}${peptide.slice(lastModPosition)}`;
+    return `<p>${peptidoform}</p>`;
+};
+// At the moment, there is only phospho data. In future we may have more, the below AA sites have to be updated to accomodate more.
+const AAPhosphoSites = {
+    A: 'alanine',
+    S: 'serine',
+    T: 'threonine',
+    Y: 'tyrosine',
+};
+const findModifiedResidueName = (feature, ptm) => {
+    const { peptide, begin: peptideStart } = feature;
+    const proteinLocation = Number(peptideStart) + ptm.position - 1;
+    const modifiedResidue = peptide.charAt(ptm.position - 1); // CharAt index starts from 0
+    return `${proteinLocation} phospho${AAPhosphoSites[modifiedResidue]}`;
+};
+const formatTooltip = (feature) => {
+    const evidenceHTML = feature.type === 'PROTEOMICS_PTM'
+        ? getPTMEvidence(feature.ptms)
+        : getEvidenceFromCodes(feature.evidences);
+    const ptms = feature.type === 'PROTEOMICS_PTM' &&
+        feature.ptms.map((ptm) => findModifiedResidueName(feature, ptm));
+    const dataset = feature.type === 'PROTEOMICS_PTM' &&
+        feature.ptms.flatMap(({ dbReferences }) => dbReferences.map((ref) => ref.id));
+    let { description } = feature;
+    if (feature.type === 'BINDING' || feature.type === 'Binding site') {
+        let bindingDescription = '';
+        if (feature.ligandPart) {
+            bindingDescription += `${feature.ligandPart.name} of `;
+        }
+        if (feature.ligand) {
+            bindingDescription += feature.ligand.name;
+        }
+        if (feature.description) {
+            bindingDescription += `; ${feature.description}`;
+        }
+        description = bindingDescription;
+    }
+    try {
+        return `
+        ${description ? `<h5>Description</h5><p>${description}</p>` : ``}
+        ${feature.matchScore
+            ? `<h5>Match score</h5><p>${feature.matchScore}%</p>`
+            : ``}
+        ${feature.ftId ? `<h5>Feature ID</h5><p>${feature.ftId}</p>` : ``}
+        ${feature.alternativeSequence
+            ? `<h5>Alternative sequence</h5><p>${feature.alternativeSequence}</p>`
+            : ``}
+        ${ptms
+            ? `<h5 data-article-id="ptm_processing_section">PTMs</h5><ul>${ptms
+                .map((item) => `<li>${item}</li>`)
+                .join('')}</ul>
+              `
+            : ''}
+        ${feature.peptide && feature.type === 'PROTEOMICS_PTM'
+            ? `<h5 data-article-id="mod_res_large_scale#what-is-the-goldsilverbronze-criterion">Peptidoform</h5><p>${formatPTMPeptidoform(feature.peptide, feature.ptms)}</p>`
+            : ``}
+        ${feature.peptide && feature.type !== 'PROTEOMICS_PTM'
+            ? `<h5>Peptide</h5><p>${feature.peptide}</p>`
+            : ``} 
+        ${feature.xrefs
+            ? `<h5>Cross-references</h5>${formatXrefs(feature.xrefs)}`
+            : ``}
+        ${evidenceHTML ? `<h5>Evidence</h5>${evidenceHTML}` : ``}
+        ${feature.ptms && dataset && !dataset.includes('Glue project')
+            ? `<hr /><h5 data-article-id="mod_res_large_scale#what-is-the-goldsilverbronze-criterion">PTM statistical attributes</h5><ul>${feature.ptms
+                .map((ptm) => ptm.dbReferences
+                .map((ref) => `<li><b>${ref.id}</b></li>
+                        <li style="text-indent: 1em"><b>${findModifiedResidueName(feature, ptm)}</b></li>
+                        <li style="text-indent: 2em">PubMed ID: <a href="https://europepmc.org/article/MED/${ref.properties['Pubmed ID']}" style="color:#FFF" target="_blank">
+                        ${ref.properties['Pubmed ID']}</a>
+                        </li>
+                        <li style="text-indent: 2em"><span data-article-id="mod_res_large_scale#confidence-score">Confidence score</span>: ${ref.properties['Confidence score']}</li>
+                        <li style="text-indent: 2em">Universal Spectrum Id: 
+                        <a href="http://proteomecentral.proteomexchange.org/usi/?usi=${ref.properties['Universal Spectrum Id']}" style="color:#FFF" target="_blank">View on ProteomeXchange</a>
+                        </li>
+                        <li style="text-indent: 2em">PSM Count (0.05 gFLR): ${ref.properties['PSM Count (0.05 gFLR)']}</li>
+                        <li style="text-indent: 2em">Final site probability: ${ref.properties['Final site probability']}</li>
+                        `)
+                .join(''))
+                .join('')}</ul>`
+            : ''}
+          `;
+    }
+    catch (error) {
+        console.error(error);
+        return '';
+    }
+};
+export default formatTooltip;
+//# sourceMappingURL=featureTooltip.js.map

package/dist/es/tooltips/featureTooltip.js.map

@@ -0,0 +1 @@
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package/dist/es/tooltips/structureTooltip.d.ts

@@ -0,0 +1,2 @@
+declare const formatTooltip: (feature: any) => string;
+export default formatTooltip;

package/dist/es/tooltips/structureTooltip.js

@@ -0,0 +1,15 @@
+const getStructuresHTML = (structureList) => {
+    return `<ul>
+              ${structureList
+        .map((structure) => `<li style="margin: 0.25rem 0"><a style="color:#FFF" href='${structure.source.url}' target='_blank'>
+              ${structure.source.id}
+          </a> (${structure.start}-${structure.end})</li>`)
+        .join('')}
+          </ul>`;
+};
+const formatTooltip = (feature) => {
+    const structuresHTML = getStructuresHTML(feature.structures);
+    return `${structuresHTML ? `<h5>Structures</h5>${structuresHTML}` : ``}`;
+};
+export default formatTooltip;
+//# sourceMappingURL=structureTooltip.js.map

package/dist/es/tooltips/structureTooltip.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"structureTooltip.js","sourceRoot":"","sources":["../../../src/tooltips/structureTooltip.ts"],"names":[],"mappings":"AAAA,MAAM,iBAAiB,GAAG,CAAC,aAAa,EAAE,EAAE;IAC1C,OAAO;gBACO,aAAa;SACZ,GAAG,CACF,CACE,SAAS,EACT,EAAE,CAAC,6DAA6D,SAAS,CAAC,MAAM,CAAC,GAAG;gBACxF,SAAS,CAAC,MAAM,CAAC,EAAE;kBACjB,SAAS,CAAC,KAAK,IAAI,SAAS,CAAC,GAAG,QAAQ,CACzC;SACA,IAAI,CAAC,EAAE,CAAC;gBACT,CAAC;AACjB,CAAC,CAAC;AAEF,MAAM,aAAa,GAAG,CAAC,OAAO,EAAE,EAAE;IAChC,MAAM,cAAc,GAAG,iBAAiB,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;IAC7D,OAAO,GAAG,cAAc,CAAC,CAAC,CAAC,sBAAsB,cAAc,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC;AAC3E,CAAC,CAAC;AAEF,eAAe,aAAa,CAAC"}

package/dist/es/tooltips/variationTooltip.d.ts

@@ -0,0 +1,3 @@
+import { Variant } from '@nightingale-elements/nightingale-variation';
+declare const formatTooltip: (variant: Variant) => string;
+export default formatTooltip;