protvista-uniprot 2.13.2 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/es/__spec__/filter-config.spec.d.ts +1 -0
- package/dist/es/__spec__/filter-config.spec.js +123 -0
- package/dist/es/__spec__/filter-config.spec.js.map +1 -0
- package/dist/es/adapters/__tests__/__mocks__/uniprotkb-entry-data.d.ts +47 -0
- package/dist/es/adapters/__tests__/__mocks__/uniprotkb-entry-data.js +75 -0
- package/dist/es/adapters/__tests__/__mocks__/uniprotkb-entry-data.js.map +1 -0
- package/dist/es/adapters/__tests__/structure-adapter.spec.d.ts +1 -0
- package/dist/es/adapters/__tests__/structure-adapter.spec.js +14 -0
- package/dist/es/adapters/__tests__/structure-adapter.spec.js.map +1 -0
- package/dist/es/adapters/alphafold-confidence-adapter.d.ts +8 -0
- package/dist/es/{protvista-alphafold-confidence.js → adapters/alphafold-confidence-adapter.js} +4 -3
- package/dist/es/adapters/alphafold-confidence-adapter.js.map +1 -0
- package/dist/es/adapters/alphamissense-heatmap-adapter.d.ts +8 -0
- package/dist/es/{protvista-alphamissense-heatmap.js → adapters/alphamissense-heatmap-adapter.js} +4 -3
- package/dist/es/adapters/alphamissense-heatmap-adapter.js.map +1 -0
- package/dist/es/adapters/alphamissense-pathogenicity-adapter.d.ts +10 -0
- package/dist/es/{protvista-alphamissense-pathogenicity.js → adapters/alphamissense-pathogenicity-adapter.js} +3 -2
- package/dist/es/adapters/alphamissense-pathogenicity-adapter.js.map +1 -0
- package/dist/es/adapters/config/evidence.d.ts +14 -0
- package/dist/es/adapters/config/evidence.js +101 -0
- package/dist/es/adapters/config/evidence.js.map +1 -0
- package/dist/es/adapters/feature-adapter.d.ts +2 -0
- package/dist/es/adapters/feature-adapter.js +18 -0
- package/dist/es/adapters/feature-adapter.js.map +1 -0
- package/dist/es/adapters/interpro-adapter.d.ts +2 -0
- package/dist/es/adapters/interpro-adapter.js +60 -0
- package/dist/es/adapters/interpro-adapter.js.map +1 -0
- package/dist/es/adapters/proteomics-adapter.d.ts +2 -0
- package/dist/es/adapters/proteomics-adapter.js +66 -0
- package/dist/es/adapters/proteomics-adapter.js.map +1 -0
- package/dist/es/{protvista-ptm-exchange.d.ts → adapters/ptm-exchange-adapter.d.ts} +2 -2
- package/dist/es/{protvista-ptm-exchange.js → adapters/ptm-exchange-adapter.js} +3 -2
- package/dist/es/adapters/ptm-exchange-adapter.js.map +1 -0
- package/dist/es/adapters/structure-adapter.d.ts +4 -0
- package/dist/es/adapters/structure-adapter.js +89 -0
- package/dist/es/adapters/structure-adapter.js.map +1 -0
- package/dist/es/adapters/types/alphafold.js +2 -0
- package/dist/es/adapters/types/alphafold.js.map +1 -0
- package/dist/es/adapters/variation-adapter.d.ts +7 -0
- package/dist/es/adapters/variation-adapter.js +31 -0
- package/dist/es/adapters/variation-adapter.js.map +1 -0
- package/dist/es/{protvista-variation-graph-adapter.d.ts → adapters/variation-graph-adapter.d.ts} +2 -1
- package/dist/es/{protvista-variation-graph-adapter.js → adapters/variation-graph-adapter.js} +12 -5
- package/dist/es/adapters/variation-graph-adapter.js.map +1 -0
- package/dist/es/config.json +54 -54
- package/dist/es/filter-config.d.ts +24 -0
- package/dist/es/{filterConfig.js → filter-config.js} +1 -1
- package/dist/es/filter-config.js.map +1 -0
- package/dist/es/index.d.ts +6 -11
- package/dist/es/index.js +6 -16
- package/dist/es/index.js.map +1 -1
- package/dist/es/protvista-uniprot-structure.js +15 -9
- package/dist/es/protvista-uniprot-structure.js.map +1 -1
- package/dist/es/protvista-uniprot.d.ts +1 -100
- package/dist/es/protvista-uniprot.js +46 -60
- package/dist/es/protvista-uniprot.js.map +1 -1
- package/dist/es/styles/protvista-styles.js +2 -1
- package/dist/es/styles/protvista-styles.js.map +1 -1
- package/dist/es/tooltips/featureTooltip.d.ts +4 -0
- package/dist/es/tooltips/featureTooltip.js +160 -0
- package/dist/es/tooltips/featureTooltip.js.map +1 -0
- package/dist/es/tooltips/structureTooltip.d.ts +2 -0
- package/dist/es/tooltips/structureTooltip.js +15 -0
- package/dist/es/tooltips/structureTooltip.js.map +1 -0
- package/dist/es/tooltips/variationTooltip.d.ts +3 -0
- package/dist/es/tooltips/variationTooltip.js +82 -0
- package/dist/es/tooltips/variationTooltip.js.map +1 -0
- package/dist/es/utils.d.ts +3 -0
- package/dist/es/utils.js +28 -0
- package/dist/es/utils.js.map +1 -0
- package/dist/protvista-uniprot.js +24 -13
- package/dist/protvista-uniprot.js.map +1 -1
- package/package.json +25 -30
- package/src/__spec__/filter-config.spec.ts +143 -0
- package/src/adapters/__tests__/__mocks__/uniprotkb-entry-data.ts +76 -0
- package/src/adapters/__tests__/__snapshots__/structure-adapter.spec.ts.snap +157 -0
- package/src/adapters/__tests__/structure-adapter.spec.ts +19 -0
- package/src/{protvista-alphafold-confidence.ts → adapters/alphafold-confidence-adapter.ts} +5 -3
- package/src/{protvista-alphamissense-heatmap.ts → adapters/alphamissense-heatmap-adapter.ts} +8 -4
- package/src/{protvista-alphamissense-pathogenicity.ts → adapters/alphamissense-pathogenicity-adapter.ts} +4 -2
- package/src/adapters/config/evidence.ts +105 -0
- package/src/adapters/feature-adapter.ts +19 -0
- package/src/adapters/interpro-adapter.ts +71 -0
- package/src/adapters/proteomics-adapter.ts +76 -0
- package/src/{protvista-ptm-exchange.ts → adapters/ptm-exchange-adapter.ts} +3 -1
- package/src/adapters/structure-adapter.ts +105 -0
- package/src/adapters/variation-adapter.ts +44 -0
- package/src/{protvista-variation-graph-adapter.ts → adapters/variation-graph-adapter.ts} +25 -18
- package/src/config.json +54 -54
- package/src/{filterConfig.ts → filter-config.ts} +17 -12
- package/src/index.ts +14 -18
- package/src/protvista-uniprot-structure.ts +6 -14
- package/src/protvista-uniprot.ts +66 -96
- package/src/styles/protvista-styles.ts +2 -1
- package/src/tooltips/featureTooltip.ts +223 -0
- package/src/tooltips/structureTooltip.ts +20 -0
- package/src/tooltips/variationTooltip.ts +139 -0
- package/src/utils.ts +37 -0
- package/dist/es/commonTypes.js +0 -2
- package/dist/es/commonTypes.js.map +0 -1
- package/dist/es/filterConfig.d.ts +0 -20
- package/dist/es/filterConfig.js.map +0 -1
- package/dist/es/loadComponents.d.ts +0 -2
- package/dist/es/loadComponents.js +0 -7
- package/dist/es/loadComponents.js.map +0 -1
- package/dist/es/protvista-alphafold-confidence.d.ts +0 -9
- package/dist/es/protvista-alphafold-confidence.js.map +0 -1
- package/dist/es/protvista-alphamissense-heatmap.d.ts +0 -8
- package/dist/es/protvista-alphamissense-heatmap.js.map +0 -1
- package/dist/es/protvista-alphamissense-pathogenicity.d.ts +0 -10
- package/dist/es/protvista-alphamissense-pathogenicity.js.map +0 -1
- package/dist/es/protvista-ptm-exchange.js.map +0 -1
- package/dist/es/protvista-variation-graph-adapter.js.map +0 -1
- package/src/loadComponents.ts +0 -10
- package/src/types/nightingale-components.d.ts +0 -13
- package/src/types/nightingale-sequence-heatmap.d.ts +0 -1
- package/src/types/protvista-feature-adapter.d.ts +0 -1
- package/src/types/protvista-interpro-adapter.d.ts +0 -1
- package/src/types/protvista-proteomics-adapter.d.ts +0 -1
- package/src/types/protvista-structure-adapter.d.ts +0 -1
- package/src/types/protvista-structure.d.ts +0 -1
- package/src/types/protvista-variation.d.ts +0 -15
- /package/dist/es/{commonTypes.d.ts → adapters/types/alphafold.d.ts} +0 -0
- /package/src/{commonTypes.ts → adapters/types/alphafold.ts} +0 -0
package/dist/es/config.json
CHANGED
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"trackType": "nightingale-track",
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"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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"data": [
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{
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"url": "https://www.ebi.ac.uk/proteins/api/proteomics-ptm/{accession}"
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"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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"data": [
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{
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"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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"data": [
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{
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"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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"data": [
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{
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"url": "https://www.ebi.ac.uk/proteins/api/epitope/{accession}"
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"trackType": "nightingale-track",
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"data": [
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{
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"adapter": "feature-adapter",
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"url": "https://www.ebi.ac.uk/proteins/api/antigen/{accession}"
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}
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"trackType": "nightingale-track",
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"data": [
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{
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"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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}
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],
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"trackType": "nightingale-track",
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"data": [
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{
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"adapter": "feature-adapter",
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"url": "https://www.ebi.ac.uk/proteins/api/mutagenesis/{accession}"
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}
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@@ -564,7 +564,7 @@
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"trackType": "nightingale-linegraph-track",
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"data": [
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{
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"adapter": "
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"adapter": "variation-graph-adapter",
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"url": "https://www.ebi.ac.uk/proteins/api/variation/{accession}"
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@@ -572,11 +572,11 @@
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},
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{
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"name": "variation",
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"filterComponent": "
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"filterComponent": "nightingale-filter",
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"trackType": "nightingale-variation",
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"data": [
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{
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"url": "https://www.ebi.ac.uk/proteins/api/variation/{accession}"
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@@ -588,7 +588,7 @@
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"name": "PROTEOMICS",
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"label": "Proteomics",
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"trackType": "nightingale-track",
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"adapter": "
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"urls": [
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"https://www.ebi.ac.uk/proteins/api/proteomics/{accession}",
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"https://www.ebi.ac.uk/proteins/api/proteomics-ptm/{accession}"
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@@ -601,7 +601,7 @@
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{
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"url": "https://www.ebi.ac.uk/proteins/api/proteomics/{accession}"
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@@ -614,7 +614,7 @@
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{
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"url": "https://www.ebi.ac.uk/proteins/api/proteomics/{accession}"
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@@ -626,7 +626,7 @@
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{
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"url": "https://www.ebi.ac.uk/proteins/api/hpp/{accession}"
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}
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],
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@@ -638,7 +638,7 @@
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"trackType": "nightingale-track",
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"data": [
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{
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"url": "https://www.ebi.ac.uk/proteins/api/proteomics-ptm/{accession}"
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}
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],
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@@ -658,7 +658,7 @@
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"tooltip": "PDBe 3D structure coverage",
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"data": [
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{
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"adapter": "
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"adapter": "structure-adapter",
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"url": "https://www.ebi.ac.uk/proteins/api/proteins/{accession}"
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}
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]
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@@ -679,7 +679,7 @@
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"trackType": "nightingale-colored-sequence",
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"data": [
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{
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|
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"adapter": "
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"adapter": "alphafold-confidence-adapter",
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|
"url": [
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"https://alphafold.ebi.ac.uk/api/prediction/{accession}",
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"https://www.ebi.ac.uk/proteins/api/proteins/{accession}"
|
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@@ -703,7 +703,7 @@
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"trackType": "nightingale-colored-sequence",
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"data": [
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{
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|
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"adapter": "
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|
+
"adapter": "alphamissense-pathogenicity-adapter",
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|
"url": [
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|
"https://alphafold.ebi.ac.uk/api/prediction/{accession}",
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"https://www.ebi.ac.uk/proteins/api/proteins/{accession}"
|
|
@@ -719,7 +719,7 @@
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"trackType": "nightingale-sequence-heatmap",
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|
"data": [
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{
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|
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"adapter": "
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|
+
"adapter": "alphamissense-heatmap-adapter",
|
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|
"url": [
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"https://alphafold.ebi.ac.uk/api/prediction/{accession}",
|
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|
"https://www.ebi.ac.uk/proteins/api/proteins/{accession}"
|
|
@@ -742,7 +742,7 @@
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|
"trackType": "nightingale-track",
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|
"data": [
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|
{
|
|
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|
-
"adapter": "
|
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|
+
"adapter": "feature-adapter",
|
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|
"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
|
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|
}
|
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|
],
|
|
@@ -755,7 +755,7 @@
|
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|
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|
"trackType": "nightingale-track",
|
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|
"data": [
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|
{
|
|
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|
-
"adapter": "
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|
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|
+
"adapter": "feature-adapter",
|
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|
"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
|
|
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|
}
|
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|
],
|
|
@@ -768,7 +768,7 @@
|
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|
"trackType": "nightingale-track",
|
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|
"data": [
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|
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|
{
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|
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|
-
"adapter": "
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|
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|
+
"adapter": "feature-adapter",
|
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|
"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
|
|
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|
}
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|
],
|
|
@@ -781,7 +781,7 @@
|
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|
"trackType": "nightingale-track",
|
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|
"data": [
|
|
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|
{
|
|
784
|
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"adapter": "
|
|
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|
+
"adapter": "feature-adapter",
|
|
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|
"url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
|
|
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|
}
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|
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|
],
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
import { VariationDatum } from '@nightingale-elements/nightingale-variation';
|
|
2
|
+
export type VariantsForFilter = {
|
|
3
|
+
variants: VariationDatum[];
|
|
4
|
+
}[];
|
|
5
|
+
export declare const getFilteredVariants: (variants: VariantsForFilter, callbackFilter: (variantPos: VariationDatum) => void) => {
|
|
6
|
+
variants: VariationDatum[];
|
|
7
|
+
}[];
|
|
8
|
+
declare const filterConfig: {
|
|
9
|
+
name: string;
|
|
10
|
+
type: {
|
|
11
|
+
name: string;
|
|
12
|
+
text: string;
|
|
13
|
+
};
|
|
14
|
+
options: {
|
|
15
|
+
label: string;
|
|
16
|
+
color: string;
|
|
17
|
+
};
|
|
18
|
+
filterPredicate: (variantPos: any) => any;
|
|
19
|
+
filterData: (variants: VariantsForFilter) => {
|
|
20
|
+
variants: VariationDatum[];
|
|
21
|
+
}[];
|
|
22
|
+
}[];
|
|
23
|
+
export declare const colorConfig: (variant: any) => string;
|
|
24
|
+
export default filterConfig;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"filter-config.js","sourceRoot":"","sources":["../../src/filter-config.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,GAAG;IAClB,cAAc,EAAE,SAAS;IACzB,iBAAiB,EAAE,SAAS;IAC5B,cAAc,EAAE,SAAS;IACzB,WAAW,EAAE,SAAS;CACvB,CAAC;AAEF,MAAM,YAAY,GAAG;IACnB,SAAS,EAAE,CAAC,YAAY,EAAE,cAAc,EAAE,eAAe,EAAE,cAAc,CAAC;CAC3E,CAAC;AAEF,MAAM,mBAAmB,GAAG,CAC1B,oBAA4C,EAC5C,MAAgB,EAChB,EAAE,CACF,oBAAoB,CAAC,IAAI,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE;IACrC,OAAO,MAAM,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;AAC5C,CAAC,CAAC,CAAC;AAML,MAAM,CAAC,MAAM,mBAAmB,GAAG,CACjC,QAA2B,EAC3B,cAAoD,EACpD,EAAE,CACF,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE;IACvB,MAAM,gBAAgB,GAAG,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,UAAU,EAAE,EAAE,CAC9D,cAAc,CAAC,UAAU,CAAC,CAC3B,CAAC;IACF,OAAO;QACL,GAAG,OAAO;QACV,QAAQ,EAAE,CAAC,GAAG,gBAAgB,CAAC;KAChC,CAAC;AACJ,CAAC,CAAC,CAAC;AAEL,MAAM,gBAAgB,GAAG;IACvB,OAAO,EAAE,CAAC,UAAU,EAAE,EAAE,WACtB,OAAA,MAAA,UAAU,CAAC,WAAW,0CAAE,IAAI,CAAC,CAAC,WAAW,EAAE,EAAE,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA,EAAA;IACpE,SAAS,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,UAAU,CAAC,cAAc;IACpD,UAAU,EAAE,CAAC,UAAU,EAAE,EAAE;;QACzB,OAAA,MAAA,UAAU,CAAC,WAAW,0CAAE,IAAI,CAC1B,CAAC,WAAW,EAAE,EAAE,CAAC,WAAW,CAAC,OAAO,KAAK,KAAK,CAC/C,CAAA;KAAA;IACH,SAAS,EAAE,CAAC,UAAU,EAAE,EAAE,CACxB,CAAC,OAAO,UAAU,CAAC,qBAAqB,KAAK,WAAW;QACtD,CAAC,UAAU,CAAC,cAAc,CAAC;QAC7B,CAAC,UAAU,CAAC,qBAAqB;YAC/B,mBAAmB,CACjB,UAAU,CAAC,qBAAqB,EAChC,YAAY,CAAC,SAAS,CACvB,CAAC;IACN,OAAO,EAAE,CAAC,UAAU,EAAE,EAAE,CACtB,UAAU,CAAC,SAAS;QACpB,CAAC,UAAU,CAAC,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC;YACvC,UAAU,CAAC,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC;IAC7C,OAAO,EAAE,CAAC,UAAU,EAAE,EAAE,CACtB,UAAU,CAAC,SAAS;QACpB,CAAC,UAAU,CAAC,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC;YACvC,UAAU,CAAC,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC;IAC7C,GAAG,EAAE,CAAC,UAAU,EAAE,EAAE,CAClB,UAAU,CAAC,UAAU,KAAK,mBAAmB;QAC7C,UAAU,CAAC,UAAU,KAAK,OAAO;CACpC,CAAC;AAEF,MAAM,YAAY,GAAG;IACnB;QACE,IAAI,EAAE,SAAS;QACf,IAAI,EAAE;YACJ,IAAI,EAAE,aAAa;YACnB,IAAI,EAAE,oBAAoB;SAC3B;QACD,OAAO,EAAE;YACP,KAAK,EAAE,iCAAiC;YACxC,KAAK,EAAE,WAAW,CAAC,cAAc;SAClC;QACD,eAAe,EAAE,gBAAgB,CAAC,SAAS,CAAC;QAC5C,UAAU,EAAE,CAAC,QAA2B,EAAE,EAAE,CAC1C,mBAAmB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,SAAS,CAAC,CAAC;KAC7D;IACD;QACE,IAAI,EAAE,WAAW;QACjB,IAAI,EAAE;YACJ,IAAI,EAAE,aAAa;YACnB,IAAI,EAAE,oBAAoB;SAC3B;QACD,OAAO,EAAE;YACP,KAAK,EAAE,uBAAuB;YAC9B,KAAK,EAAE,WAAW,CAAC,cAAc;SAClC;QACD,eAAe,EAAE,gBAAgB,CAAC,WAAW,CAAC;QAC9C,UAAU,EAAE,CAAC,QAA2B,EAAE,EAAE,CAC1C,mBAAmB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,WAAW,CAAC,CAAC;KAC/D;IACD;QACE,IAAI,EAAE,YAAY;QAClB,IAAI,EAAE;YACJ,IAAI,EAAE,aAAa;YACnB,IAAI,EAAE,oBAAoB;SAC3B;QACD,OAAO,EAAE;YACP,KAAK,EAAE,yBAAyB;YAChC,KAAK,EAAE,WAAW,CAAC,iBAAiB;SACrC;QACD,eAAe,EAAE,gBAAgB,CAAC,YAAY,CAAC;QAC/C,UAAU,EAAE,CAAC,QAA2B,EAAE,EAAE,CAC1C,mBAAmB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,YAAY,CAAC,CAAC;KAChE;IACD;QACE,IAAI,EAAE,WAAW;QACjB,IAAI,EAAE;YACJ,IAAI,EAAE,aAAa;YACnB,IAAI,EAAE,oBAAoB;SAC3B;QACD,OAAO,EAAE;YACP,KAAK,EAAE,wBAAwB;YAC/B,KAAK,EAAE,WAAW,CAAC,WAAW;SAC/B;QACD,eAAe,EAAE,gBAAgB,CAAC,WAAW,CAAC;QAC9C,UAAU,EAAE,CAAC,QAA2B,EAAE,EAAE,CAC1C,mBAAmB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,WAAW,CAAC,CAAC;KAC/D;IACD;QACE,IAAI,EAAE,SAAS;QACf,IAAI,EAAE;YACJ,IAAI,EAAE,YAAY;YAClB,IAAI,EAAE,mBAAmB;SAC1B;QACD,OAAO,EAAE;YACP,KAAK,EAAE,kBAAkB;YACzB,KAAK,EAAE,SAAS;SACjB;QACD,eAAe,EAAE,gBAAgB,CAAC,SAAS,CAAC;QAC5C,UAAU,EAAE,CAAC,QAA2B,EAAE,EAAE,CAC1C,mBAAmB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,SAAS,CAAC,CAAC;KAC7D;IACD;QACE,IAAI,EAAE,SAAS;QACf,IAAI,EAAE;YACJ,IAAI,EAAE,YAAY;YAClB,IAAI,EAAE,mBAAmB;SAC1B;QACD,OAAO,EAAE;YACP,KAAK,EAAE,SAAS;YAChB,KAAK,EAAE,SAAS;SACjB;QACD,eAAe,EAAE,gBAAgB,CAAC,SAAS,CAAC;QAC5C,UAAU,EAAE,CAAC,QAA2B,EAAE,EAAE,CAC1C,mBAAmB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,SAAS,CAAC,CAAC;KAC7D;IACD;QACE,IAAI,EAAE,KAAK;QACX,IAAI,EAAE;YACJ,IAAI,EAAE,YAAY;YAClB,IAAI,EAAE,mBAAmB;SAC1B;QACD,OAAO,EAAE;YACP,KAAK,EAAE,qBAAqB;YAC5B,KAAK,EAAE,SAAS;SACjB;QACD,eAAe,EAAE,gBAAgB,CAAC,KAAK,CAAC;QACxC,UAAU,EAAE,CAAC,QAA2B,EAAE,EAAE,CAC1C,mBAAmB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,KAAK,CAAC,CAAC;KACzD;CACF,CAAC;AAEF,MAAM,sBAAsB,GAAG,CAC7B,UAAgE,EAChE,OAAuB,EACvB,EAAE;IACF,MAAM,cAAc,GAAsB,CAAC,EAAE,QAAQ,EAAE,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;IACpE,MAAM,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,IAAI,KAAK,UAAU,CAAC,CAAC;IACzE,IAAI,MAAM,EAAE;QACV,OAAO,MAAM,CAAC,UAAU,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;KACjE;IACD,OAAO,KAAK,CAAC;AACf,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,WAAW,GAAG,CAAC,OAAY,EAAE,EAAE;IAC1C,IAAI,sBAAsB,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE;QAC9C,OAAO,WAAW,CAAC,cAAc,CAAC;KACnC;SAAM,IAAI,sBAAsB,CAAC,YAAY,EAAE,OAAO,CAAC,EAAE;QACxD,OAAO,WAAW,CAAC,iBAAiB,CAAC;KACtC;SAAM,IAAI,sBAAsB,CAAC,WAAW,EAAE,OAAO,CAAC,EAAE;QACvD,OAAO,WAAW,CAAC,WAAW,CAAC;KAChC;SAAM,IAAI,sBAAsB,CAAC,WAAW,EAAE,OAAO,CAAC,EAAE;QACvD,OAAO,WAAW,CAAC,cAAc,CAAC;KACnC;IACD,OAAO,WAAW,CAAC,WAAW,CAAC;AACjC,CAAC,CAAC;AAEF,eAAe,YAAY,CAAC"}
|
package/dist/es/index.d.ts
CHANGED
|
@@ -1,12 +1,7 @@
|
|
|
1
1
|
import ProtvistaUniprot from './protvista-uniprot';
|
|
2
|
-
import
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
variants: any[];
|
|
9
|
-
};
|
|
10
|
-
export declare const transformDataInterproAdapter: any;
|
|
11
|
-
export declare const ProtvistaUniprotStructure: typeof _ProtvistaUniprotStructure;
|
|
12
|
-
export default ProtvistaUniprot;
|
|
2
|
+
import ProtvistaUniprotStructure from './protvista-uniprot-structure';
|
|
3
|
+
import filterConfig, { colorConfig } from './filter-config';
|
|
4
|
+
import getFeatureTooltip from './tooltips/featureTooltip';
|
|
5
|
+
import getStructureTooltip from './tooltips/structureTooltip';
|
|
6
|
+
import getVariationTooltip from './tooltips/variationTooltip';
|
|
7
|
+
export { ProtvistaUniprot as default, ProtvistaUniprotStructure, filterConfig, colorConfig, getFeatureTooltip, getStructureTooltip, getVariationTooltip, };
|
package/dist/es/index.js
CHANGED
|
@@ -1,18 +1,8 @@
|
|
|
1
|
-
import { loadComponent } from './loadComponents';
|
|
2
1
|
import ProtvistaUniprot from './protvista-uniprot';
|
|
3
|
-
import
|
|
4
|
-
import {
|
|
5
|
-
import
|
|
6
|
-
import
|
|
7
|
-
import
|
|
8
|
-
|
|
9
|
-
export const transformDataFeatureAdapter = _transformDataFeatureAdapter;
|
|
10
|
-
export const transformDataProteomicsAdapter = _transformDataProteomicsAdapter;
|
|
11
|
-
export const transformDataStructureAdapter = _transformDataStructureAdapter;
|
|
12
|
-
export const transformDataVariationAdapter = _transformDataVariationAdapter;
|
|
13
|
-
export const transformDataInterproAdapter = _transformDataInterproAdapter;
|
|
14
|
-
export const ProtvistaUniprotStructure = _ProtvistaUniprotStructure;
|
|
15
|
-
loadComponent('protvista-uniprot', ProtvistaUniprot);
|
|
16
|
-
loadComponent('protvista-uniprot-structure', _ProtvistaUniprotStructure);
|
|
17
|
-
export default ProtvistaUniprot;
|
|
2
|
+
import ProtvistaUniprotStructure from './protvista-uniprot-structure';
|
|
3
|
+
import filterConfig, { colorConfig } from './filter-config';
|
|
4
|
+
import getFeatureTooltip from './tooltips/featureTooltip';
|
|
5
|
+
import getStructureTooltip from './tooltips/structureTooltip';
|
|
6
|
+
import getVariationTooltip from './tooltips/variationTooltip';
|
|
7
|
+
export { ProtvistaUniprot as default, ProtvistaUniprotStructure, filterConfig, colorConfig, getFeatureTooltip, getStructureTooltip, getVariationTooltip, };
|
|
18
8
|
//# sourceMappingURL=index.js.map
|
package/dist/es/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,gBAAgB,MAAM,qBAAqB,CAAC;AACnD,OAAO,yBAAyB,MAAM,+BAA+B,CAAC;AAEtE,OAAO,YAAY,EAAE,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAE5D,OAAO,iBAAiB,MAAM,2BAA2B,CAAC;AAC1D,OAAO,mBAAmB,MAAM,6BAA6B,CAAC;AAC9D,OAAO,mBAAmB,MAAM,6BAA6B,CAAC;AAE9D,OAAO,EACL,gBAAgB,IAAI,OAAO,EAC3B,yBAAyB,EACzB,YAAY,EACZ,WAAW,EACX,iBAAiB,EACjB,mBAAmB,EACnB,mBAAmB,GACpB,CAAC"}
|
|
@@ -1,9 +1,16 @@
|
|
|
1
|
+
var __decorate = (this && this.__decorate) || function (decorators, target, key, desc) {
|
|
2
|
+
var c = arguments.length, r = c < 3 ? target : desc === null ? desc = Object.getOwnPropertyDescriptor(target, key) : desc, d;
|
|
3
|
+
if (typeof Reflect === "object" && typeof Reflect.decorate === "function") r = Reflect.decorate(decorators, target, key, desc);
|
|
4
|
+
else for (var i = decorators.length - 1; i >= 0; i--) if (d = decorators[i]) r = (c < 3 ? d(r) : c > 3 ? d(target, key, r) : d(target, key)) || r;
|
|
5
|
+
return c > 3 && r && Object.defineProperty(target, key, r), r;
|
|
6
|
+
};
|
|
1
7
|
import { LitElement, html, svg, css } from 'lit';
|
|
8
|
+
// eslint-disable-next-line @typescript-eslint/no-unused-vars
|
|
9
|
+
import { customElement } from 'lit/decorators.js';
|
|
2
10
|
import { unsafeHTML } from 'lit/directives/unsafe-html.js';
|
|
3
|
-
import { load } from 'data-loader';
|
|
4
11
|
import NightingaleStructure from '@nightingale-elements/nightingale-structure';
|
|
5
12
|
import ProtvistaDatatable from 'protvista-datatable';
|
|
6
|
-
import { loadComponent } from './
|
|
13
|
+
import { fetchAll, loadComponent } from './utils';
|
|
7
14
|
import loaderIcon from './icons/spinner.svg';
|
|
8
15
|
import downloadIcon from './icons/download.svg';
|
|
9
16
|
import loaderStyles from './styles/loader-styles';
|
|
@@ -110,7 +117,7 @@ const foldseekURL = (accession, sourceDB) => {
|
|
|
110
117
|
>`;
|
|
111
118
|
};
|
|
112
119
|
const styleId = 'protvista-styles';
|
|
113
|
-
class ProtvistaUniprotStructure extends LitElement {
|
|
120
|
+
let ProtvistaUniprotStructure = class ProtvistaUniprotStructure extends LitElement {
|
|
114
121
|
constructor() {
|
|
115
122
|
super();
|
|
116
123
|
loadComponent('nightingale-structure', NightingaleStructure);
|
|
@@ -136,11 +143,7 @@ class ProtvistaUniprotStructure extends LitElement {
|
|
|
136
143
|
// https://www.ebi.ac.uk/pdbe/api/mappings/best_structures/${this.accession}
|
|
137
144
|
const pdbUrl = `https://www.ebi.ac.uk/proteins/api/proteins/${this.accession}`;
|
|
138
145
|
const alphaFoldURl = `https://alphafold.ebi.ac.uk/api/prediction/${this.accession}`;
|
|
139
|
-
const rawData = [];
|
|
140
|
-
await Promise.all([pdbUrl, alphaFoldURl].map((url) => load(url).then((data) => (rawData[url] = data.payload),
|
|
141
|
-
// TODO handle this better based on error code
|
|
142
|
-
// Fail silently for now
|
|
143
|
-
(error) => console.warn(error))));
|
|
146
|
+
const rawData = await fetchAll([pdbUrl, alphaFoldURl]);
|
|
144
147
|
this.loading = false;
|
|
145
148
|
// TODO: return if no data at all
|
|
146
149
|
// if (!payload) return;
|
|
@@ -368,6 +371,9 @@ class ProtvistaUniprotStructure extends LitElement {
|
|
|
368
371
|
</div>
|
|
369
372
|
`;
|
|
370
373
|
}
|
|
371
|
-
}
|
|
374
|
+
};
|
|
375
|
+
ProtvistaUniprotStructure = __decorate([
|
|
376
|
+
customElement('protvista-uniprot-structure')
|
|
377
|
+
], ProtvistaUniprotStructure);
|
|
372
378
|
export default ProtvistaUniprotStructure;
|
|
373
379
|
//# sourceMappingURL=protvista-uniprot-structure.js.map
|