promptspeak-mcp-server 0.1.0

package/dist/symbols/graph-manager.js

@@ -0,0 +1,616 @@
+/**
+ * ═══════════════════════════════════════════════════════════════════════════════
+ * PROMPTSPEAK GRAPH MANAGER
+ * ═══════════════════════════════════════════════════════════════════════════════
+ *
+ * Graph traversal and relationship management for PromptSpeak symbols.
+ * Implements patterns from:
+ * - Microsoft GraphRAG subgraph retrieval
+ * - Neo4j Cypher traversal patterns
+ * - SQLite recursive CTEs for path finding
+ *
+ * Key Features:
+ * - N-hop neighborhood retrieval
+ * - Shortest path finding
+ * - Relationship type filtering
+ * - Weighted traversal
+ * - Bidirectional queries
+ *
+ * ═══════════════════════════════════════════════════════════════════════════════
+ */
+import { getDatabase } from './database.js';
+import { RELATIONSHIP_CATEGORIES, INVERSE_RELATIONSHIPS, } from './graph-types.js';
+// ═══════════════════════════════════════════════════════════════════════════════
+// GRAPH MANAGER CLASS
+// ═══════════════════════════════════════════════════════════════════════════════
+export class GraphManager {
+    // Prepared statements (cached for performance)
+    stmtInsertRelationship;
+    stmtGetRelationship;
+    stmtDeleteRelationship;
+    stmtGetOutgoing;
+    stmtGetIncoming;
+    stmtGetBidirectional;
+    stmtCountByType;
+    stmtCentrality;
+    initialized = false;
+    constructor() {
+        // Lazy initialization to ensure database is ready
+    }
+    ensureInitialized() {
+        if (this.initialized)
+            return;
+        const db = getDatabase();
+        // Insert relationship
+        this.stmtInsertRelationship = db.prepare(`
+      INSERT INTO symbol_relationships (
+        from_symbol_id, to_symbol_id, relationship_type, category,
+        weight, confidence, properties, evidence, created_at, created_by
+      ) VALUES (
+        @from_symbol_id, @to_symbol_id, @relationship_type, @category,
+        @weight, @confidence, @properties, @evidence, @created_at, @created_by
+      )
+    `);
+        // Get relationship by ID
+        this.stmtGetRelationship = db.prepare(`
+      SELECT * FROM symbol_relationships WHERE id = ?
+    `);
+        // Delete relationship
+        this.stmtDeleteRelationship = db.prepare(`
+      DELETE FROM symbol_relationships WHERE id = ?
+    `);
+        // Get outgoing relationships
+        this.stmtGetOutgoing = db.prepare(`
+      SELECT * FROM symbol_relationships
+      WHERE from_symbol_id = ?
+      ORDER BY weight DESC, confidence DESC
+    `);
+        // Get incoming relationships
+        this.stmtGetIncoming = db.prepare(`
+      SELECT * FROM symbol_relationships
+      WHERE to_symbol_id = ?
+      ORDER BY weight DESC, confidence DESC
+    `);
+        // Get bidirectional relationships
+        this.stmtGetBidirectional = db.prepare(`
+      SELECT * FROM symbol_relationships
+      WHERE from_symbol_id = ? OR to_symbol_id = ?
+      ORDER BY weight DESC, confidence DESC
+    `);
+        // Count by type
+        this.stmtCountByType = db.prepare(`
+      SELECT relationship_type, COUNT(*) as count
+      FROM symbol_relationships
+      GROUP BY relationship_type
+    `);
+        // Centrality calculation
+        this.stmtCentrality = db.prepare(`
+      SELECT
+        s.symbol_id,
+        COALESCE(out_rel.out_count, 0) as out_degree,
+        COALESCE(in_rel.in_count, 0) as in_degree,
+        COALESCE(out_rel.out_count, 0) + COALESCE(in_rel.in_count, 0) as total_degree,
+        COALESCE(out_rel.out_weight, 0) + COALESCE(in_rel.in_weight, 0) as weighted_degree
+      FROM symbols s
+      LEFT JOIN (
+        SELECT from_symbol_id, COUNT(*) as out_count, SUM(weight) as out_weight
+        FROM symbol_relationships
+        GROUP BY from_symbol_id
+      ) out_rel ON s.symbol_id = out_rel.from_symbol_id
+      LEFT JOIN (
+        SELECT to_symbol_id, COUNT(*) as in_count, SUM(weight) as in_weight
+        FROM symbol_relationships
+        GROUP BY to_symbol_id
+      ) in_rel ON s.symbol_id = in_rel.to_symbol_id
+      ORDER BY total_degree DESC
+      LIMIT ?
+    `);
+        this.initialized = true;
+    }
+    // ─────────────────────────────────────────────────────────────────────────────
+    // RELATIONSHIP CRUD
+    // ─────────────────────────────────────────────────────────────────────────────
+    /**
+     * Create a new relationship between symbols.
+     */
+    createRelationship(request) {
+        this.ensureInitialized();
+        try {
+            const category = RELATIONSHIP_CATEGORIES[request.relationshipType];
+            const result = this.stmtInsertRelationship.run({
+                from_symbol_id: request.fromSymbolId,
+                to_symbol_id: request.toSymbolId,
+                relationship_type: request.relationshipType,
+                category,
+                weight: request.weight ?? 1.0,
+                confidence: request.confidence ?? 1.0,
+                properties: request.properties ? JSON.stringify(request.properties) : null,
+                evidence: request.evidence ?? null,
+                created_at: new Date().toISOString(),
+                created_by: request.createdBy ?? null,
+            });
+            // Create inverse relationship if bidirectional
+            if (request.bidirectional) {
+                const inverseType = INVERSE_RELATIONSHIPS[request.relationshipType];
+                if (inverseType) {
+                    this.stmtInsertRelationship.run({
+                        from_symbol_id: request.toSymbolId,
+                        to_symbol_id: request.fromSymbolId,
+                        relationship_type: inverseType,
+                        category: RELATIONSHIP_CATEGORIES[inverseType],
+                        weight: request.weight ?? 1.0,
+                        confidence: request.confidence ?? 1.0,
+                        properties: request.properties ? JSON.stringify(request.properties) : null,
+                        evidence: request.evidence ?? null,
+                        created_at: new Date().toISOString(),
+                        created_by: request.createdBy ?? null,
+                    });
+                }
+            }
+            return { success: true, relationshipId: result.lastInsertRowid };
+        }
+        catch (error) {
+            const msg = error instanceof Error ? error.message : String(error);
+            if (msg.includes('UNIQUE constraint failed')) {
+                return { success: false, error: 'Relationship already exists' };
+            }
+            if (msg.includes('FOREIGN KEY constraint failed')) {
+                return { success: false, error: 'One or both symbols do not exist' };
+            }
+            return { success: false, error: msg };
+        }
+    }
+    /**
+     * Get a relationship by ID.
+     */
+    getRelationship(id) {
+        this.ensureInitialized();
+        const row = this.stmtGetRelationship.get(id);
+        if (!row)
+            return null;
+        return this.rowToRelationship(row);
+    }
+    /**
+     * Delete a relationship by ID.
+     */
+    deleteRelationship(id) {
+        this.ensureInitialized();
+        const result = this.stmtDeleteRelationship.run(id);
+        return result.changes > 0;
+    }
+    /**
+     * Delete all relationships involving a symbol.
+     */
+    deleteSymbolRelationships(symbolId) {
+        this.ensureInitialized();
+        const db = getDatabase();
+        const result = db.prepare(`
+      DELETE FROM symbol_relationships
+      WHERE from_symbol_id = ? OR to_symbol_id = ?
+    `).run(symbolId, symbolId);
+        return result.changes;
+    }
+    // ─────────────────────────────────────────────────────────────────────────────
+    // RELATIONSHIP QUERIES
+    // ─────────────────────────────────────────────────────────────────────────────
+    /**
+     * Get all relationships from a symbol (outgoing).
+     */
+    getOutgoingRelationships(symbolId, options) {
+        this.ensureInitialized();
+        return this.filterRelationships(this.stmtGetOutgoing.all(symbolId), options);
+    }
+    /**
+     * Get all relationships to a symbol (incoming).
+     */
+    getIncomingRelationships(symbolId, options) {
+        this.ensureInitialized();
+        return this.filterRelationships(this.stmtGetIncoming.all(symbolId), options);
+    }
+    /**
+     * Get all related symbols (both directions).
+     */
+    getRelatedSymbols(symbolId, options) {
+        this.ensureInitialized();
+        const rows = this.stmtGetBidirectional.all(symbolId, symbolId);
+        const filtered = this.filterRelationships(rows, options);
+        const related = [];
+        const countByType = {};
+        for (const rel of filtered) {
+            const isOutgoing = rel.fromSymbolId === symbolId;
+            const relatedId = isOutgoing ? rel.toSymbolId : rel.fromSymbolId;
+            related.push({
+                symbolId: relatedId,
+                relationship: rel.relationshipType,
+                direction: isOutgoing ? 'outgoing' : 'incoming',
+                weight: rel.weight,
+                confidence: rel.confidence,
+            });
+            countByType[rel.relationshipType] = (countByType[rel.relationshipType] || 0) + 1;
+        }
+        return { symbolId, related, countByType };
+    }
+    // ─────────────────────────────────────────────────────────────────────────────
+    // GRAPH TRAVERSAL
+    // ─────────────────────────────────────────────────────────────────────────────
+    /**
+     * Get the neighborhood of a symbol (N-hop traversal).
+     * Uses recursive CTE for efficient graph traversal.
+     */
+    getNeighborhood(symbolId, options) {
+        this.ensureInitialized();
+        const maxDepth = options?.maxDepth ?? 2;
+        const minWeight = options?.minWeight ?? 0;
+        const bidirectional = options?.bidirectional ?? true;
+        const limit = options?.limit ?? 100;
+        const db = getDatabase();
+        // Build relationship type filter
+        let typeFilter = '';
+        const typeParams = [];
+        if (options?.relationshipTypes && options.relationshipTypes.length > 0) {
+            typeFilter = `AND r.relationship_type IN (${options.relationshipTypes.map(() => '?').join(',')})`;
+            typeParams.push(...options.relationshipTypes);
+        }
+        else if (options?.categories && options.categories.length > 0) {
+            typeFilter = `AND r.category IN (${options.categories.map(() => '?').join(',')})`;
+            typeParams.push(...options.categories);
+        }
+        // Recursive CTE for neighborhood traversal
+        const direction = bidirectional
+            ? `(r.from_symbol_id = n.node_id OR r.to_symbol_id = n.node_id)`
+            : `r.from_symbol_id = n.node_id`;
+        const nextNode = bidirectional
+            ? `CASE WHEN r.from_symbol_id = n.node_id THEN r.to_symbol_id ELSE r.from_symbol_id END`
+            : `r.to_symbol_id`;
+        const query = `
+      WITH RECURSIVE neighborhood(node_id, depth, path, path_relationships, path_weight, via_relationship, via_node) AS (
+        -- Base case: starting node
+        SELECT
+          ? AS node_id,
+          0 AS depth,
+          ? AS path,
+          '' AS path_relationships,
+          0.0 AS path_weight,
+          NULL AS via_relationship,
+          NULL AS via_node
+
+        UNION ALL
+
+        -- Recursive case: expand outward
+        SELECT
+          ${nextNode},
+          n.depth + 1,
+          n.path || ',' || ${nextNode},
+          CASE WHEN n.path_relationships = ''
+               THEN r.relationship_type
+               ELSE n.path_relationships || ',' || r.relationship_type END,
+          n.path_weight + r.weight,
+          r.relationship_type,
+          n.node_id
+        FROM neighborhood n
+        JOIN symbol_relationships r ON ${direction}
+        WHERE n.depth < ?
+          AND r.weight >= ?
+          ${typeFilter}
+          AND n.path NOT LIKE '%' || ${nextNode} || '%'
+      )
+      SELECT DISTINCT
+        node_id,
+        MIN(depth) as depth,
+        path,
+        path_relationships,
+        path_weight,
+        via_relationship,
+        via_node
+      FROM neighborhood
+      WHERE node_id != ?
+      GROUP BY node_id
+      ORDER BY depth, path_weight DESC
+      LIMIT ?
+    `;
+        const params = [symbolId, symbolId, maxDepth, minWeight, ...typeParams, symbolId, limit];
+        const rows = db.prepare(query).all(...params);
+        // Build result
+        const nodes = rows.map(row => ({
+            symbolId: row.node_id,
+            depth: row.depth,
+            path: options?.includePaths ? row.path.split(',') : undefined,
+            pathRelationships: options?.includePaths
+                ? row.path_relationships.split(',').filter(r => r)
+                : undefined,
+            pathWeight: row.path_weight,
+            viaRelationship: row.via_relationship,
+            viaNode: row.via_node ?? undefined,
+        }));
+        // Calculate statistics
+        const nodesAtDepth = {};
+        const byRelationshipType = {};
+        for (const node of nodes) {
+            nodesAtDepth[node.depth] = (nodesAtDepth[node.depth] || 0) + 1;
+            if (node.viaRelationship) {
+                byRelationshipType[node.viaRelationship] =
+                    (byRelationshipType[node.viaRelationship] || 0) + 1;
+            }
+        }
+        return {
+            startSymbol: symbolId,
+            nodes,
+            edgesTraversed: nodes.length,
+            stats: { nodesAtDepth, byRelationshipType },
+        };
+    }
+    /**
+     * Find paths between two symbols.
+     * Uses recursive CTE with cycle detection.
+     */
+    findPaths(fromSymbolId, toSymbolId, options) {
+        this.ensureInitialized();
+        const maxDepth = options?.maxDepth ?? 5;
+        const minWeight = options?.minWeight ?? 0;
+        const bidirectional = options?.bidirectional ?? true;
+        const limit = options?.limit ?? 10;
+        const db = getDatabase();
+        // Build relationship type filter
+        let typeFilter = '';
+        const typeParams = [];
+        if (options?.relationshipTypes && options.relationshipTypes.length > 0) {
+            typeFilter = `AND r.relationship_type IN (${options.relationshipTypes.map(() => '?').join(',')})`;
+            typeParams.push(...options.relationshipTypes);
+        }
+        const direction = bidirectional
+            ? `(r.from_symbol_id = p.current_node OR r.to_symbol_id = p.current_node)`
+            : `r.from_symbol_id = p.current_node`;
+        const nextNode = bidirectional
+            ? `CASE WHEN r.from_symbol_id = p.current_node THEN r.to_symbol_id ELSE r.from_symbol_id END`
+            : `r.to_symbol_id`;
+        const query = `
+      WITH RECURSIVE all_paths(
+        current_node,
+        path,
+        path_relationships,
+        depth,
+        total_weight,
+        min_confidence
+      ) AS (
+        SELECT
+          ?,
+          ?,
+          '',
+          0,
+          0.0,
+          1.0
+
+        UNION ALL
+
+        SELECT
+          ${nextNode},
+          p.path || ',' || ${nextNode},
+          CASE WHEN p.path_relationships = ''
+               THEN r.relationship_type
+               ELSE p.path_relationships || ',' || r.relationship_type END,
+          p.depth + 1,
+          p.total_weight + r.weight,
+          MIN(p.min_confidence, r.confidence)
+        FROM all_paths p
+        JOIN symbol_relationships r ON ${direction}
+        WHERE p.depth < ?
+          AND r.weight >= ?
+          ${typeFilter}
+          AND p.path NOT LIKE '%' || ${nextNode} || '%'
+      )
+      SELECT
+        path,
+        path_relationships,
+        depth,
+        total_weight,
+        min_confidence
+      FROM all_paths
+      WHERE current_node = ?
+      ORDER BY depth ASC, total_weight DESC
+      LIMIT ?
+    `;
+        const params = [fromSymbolId, fromSymbolId, maxDepth, minWeight, ...typeParams, toSymbolId, limit];
+        const rows = db.prepare(query).all(...params);
+        const paths = rows.map(row => ({
+            nodes: row.path.split(','),
+            relationships: row.path_relationships.split(',').filter(r => r),
+            length: row.depth,
+            totalWeight: row.total_weight,
+            minConfidence: row.min_confidence,
+        }));
+        return {
+            from: fromSymbolId,
+            to: toSymbolId,
+            found: paths.length > 0,
+            paths,
+        };
+    }
+    /**
+     * Find the shortest path between two symbols.
+     */
+    findShortestPath(fromSymbolId, toSymbolId, options) {
+        const result = this.findPaths(fromSymbolId, toSymbolId, { ...options, limit: 1 });
+        return result.found ? result.paths[0] : null;
+    }
+    // ─────────────────────────────────────────────────────────────────────────────
+    // GRAPH ANALYSIS
+    // ─────────────────────────────────────────────────────────────────────────────
+    /**
+     * Get centrality metrics for top symbols.
+     */
+    getTopSymbolsByCentrality(limit = 10) {
+        this.ensureInitialized();
+        const rows = this.stmtCentrality.all(limit);
+        return rows.map(row => ({
+            symbolId: row.symbol_id,
+            degreeCentrality: row.total_degree,
+            inDegree: row.in_degree,
+            outDegree: row.out_degree,
+            weightedDegree: row.weighted_degree,
+        }));
+    }
+    /**
+     * Get graph-level statistics.
+     */
+    getGraphStats() {
+        this.ensureInitialized();
+        const db = getDatabase();
+        // Node count
+        const nodeCountRow = db.prepare('SELECT COUNT(*) as count FROM symbols').get();
+        // Edge count
+        const edgeCountRow = db.prepare('SELECT COUNT(*) as count FROM symbol_relationships').get();
+        // Relationship type distribution
+        const typeRows = this.stmtCountByType.all();
+        const relationshipDistribution = {};
+        for (const row of typeRows) {
+            relationshipDistribution[row.relationship_type] = row.count;
+        }
+        // Category distribution
+        const categoryRows = db.prepare(`
+      SELECT category, COUNT(*) as count
+      FROM symbol_relationships
+      GROUP BY category
+    `).all();
+        const categoryDistribution = {};
+        for (const row of categoryRows) {
+            categoryDistribution[row.category] = row.count;
+        }
+        // Top symbols by centrality
+        const topSymbols = this.getTopSymbolsByCentrality(10);
+        // Graph density
+        const nodeCount = nodeCountRow.count;
+        const edgeCount = edgeCountRow.count;
+        const possibleEdges = nodeCount * (nodeCount - 1); // Directed graph
+        const density = possibleEdges > 0 ? edgeCount / possibleEdges : 0;
+        // Average degree
+        const averageDegree = nodeCount > 0 ? (edgeCount * 2) / nodeCount : 0;
+        return {
+            nodeCount,
+            edgeCount,
+            averageDegree,
+            relationshipDistribution,
+            categoryDistribution,
+            topSymbolsByCentrality: topSymbols,
+            density,
+        };
+    }
+    // ─────────────────────────────────────────────────────────────────────────────
+    // BULK OPERATIONS
+    // ─────────────────────────────────────────────────────────────────────────────
+    /**
+     * Create multiple relationships in a transaction.
+     */
+    createRelationshipsBatch(requests) {
+        this.ensureInitialized();
+        const db = getDatabase();
+        let created = 0;
+        const errors = [];
+        db.transaction(() => {
+            for (const request of requests) {
+                const result = this.createRelationship(request);
+                if (result.success) {
+                    created++;
+                }
+                else if (result.error) {
+                    errors.push(`${request.fromSymbolId} -> ${request.toSymbolId}: ${result.error}`);
+                }
+            }
+        });
+        return { success: errors.length === 0, created, errors };
+    }
+    /**
+     * Import relationships from extracted document data.
+     */
+    importExtractedRelationships(relationships, options) {
+        this.ensureInitialized();
+        const minConfidence = options?.minConfidence ?? 0.5;
+        let imported = 0;
+        let skipped = 0;
+        const db = getDatabase();
+        db.transaction(() => {
+            for (const rel of relationships) {
+                if (rel.confidence < minConfidence) {
+                    skipped++;
+                    continue;
+                }
+                const result = this.createRelationship({
+                    fromSymbolId: rel.from,
+                    toSymbolId: rel.to,
+                    relationshipType: rel.type,
+                    confidence: rel.confidence,
+                    evidence: rel.evidence,
+                    createdBy: options?.createdBy,
+                });
+                if (result.success) {
+                    imported++;
+                }
+                else {
+                    skipped++;
+                }
+            }
+        });
+        return { imported, skipped };
+    }
+    // ─────────────────────────────────────────────────────────────────────────────
+    // HELPER METHODS
+    // ─────────────────────────────────────────────────────────────────────────────
+    rowToRelationship(row) {
+        return {
+            id: row.id,
+            fromSymbolId: row.from_symbol_id,
+            toSymbolId: row.to_symbol_id,
+            relationshipType: row.relationship_type,
+            category: row.category,
+            weight: row.weight,
+            confidence: row.confidence,
+            properties: row.properties ? JSON.parse(row.properties) : undefined,
+            evidence: row.evidence ?? undefined,
+            createdAt: row.created_at,
+            createdBy: row.created_by ?? undefined,
+        };
+    }
+    filterRelationships(rows, options) {
+        let relationships = rows.map(row => this.rowToRelationship(row));
+        if (options?.types && options.types.length > 0) {
+            relationships = relationships.filter(r => options.types.includes(r.relationshipType));
+        }
+        if (options?.categories && options.categories.length > 0) {
+            relationships = relationships.filter(r => options.categories.includes(r.category));
+        }
+        if (options?.minWeight !== undefined) {
+            relationships = relationships.filter(r => r.weight >= options.minWeight);
+        }
+        if (options?.minConfidence !== undefined) {
+            relationships = relationships.filter(r => r.confidence >= options.minConfidence);
+        }
+        if (options?.orderBy) {
+            const dir = options.orderDirection === 'ASC' ? 1 : -1;
+            relationships.sort((a, b) => {
+                const aVal = a[options.orderBy];
+                const bVal = b[options.orderBy];
+                if (typeof aVal === 'number' && typeof bVal === 'number') {
+                    return (aVal - bVal) * dir;
+                }
+                return String(aVal).localeCompare(String(bVal)) * dir;
+            });
+        }
+        if (options?.limit) {
+            relationships = relationships.slice(0, options.limit);
+        }
+        return relationships;
+    }
+}
+// ═══════════════════════════════════════════════════════════════════════════════
+// SINGLETON INSTANCE
+// ═══════════════════════════════════════════════════════════════════════════════
+let graphManager = null;
+export function getGraphManager() {
+    if (!graphManager) {
+        graphManager = new GraphManager();
+    }
+    return graphManager;
+}
+export function resetGraphManager() {
+    graphManager = null;
+}
+//# sourceMappingURL=graph-manager.js.map

package/dist/symbols/graph-manager.js.map

@@ -0,0 +1 @@
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package/dist/symbols/graph-tools.d.ts

@@ -0,0 +1,15 @@
+/**
+ * ═══════════════════════════════════════════════════════════════════════════════
+ * PROMPTSPEAK GRAPH MCP TOOLS
+ * ═══════════════════════════════════════════════════════════════════════════════
+ *
+ * MCP tool definitions and handlers for graph traversal operations.
+ * Based on Microsoft GraphRAG research showing 26.5% reasoning improvement
+ * from graph-based context retrieval.
+ *
+ * ═══════════════════════════════════════════════════════════════════════════════
+ */
+import type { Tool } from '@modelcontextprotocol/sdk/types.js';
+export declare const graphToolDefinitions: Tool[];
+export declare function handleGraphTool(name: string, args: Record<string, unknown>): Promise<unknown>;
+//# sourceMappingURL=graph-tools.d.ts.map

package/dist/symbols/graph-tools.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"graph-tools.d.ts","sourceRoot":"","sources":["../../src/symbols/graph-tools.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,oCAAoC,CAAC;AAc/D,eAAO,MAAM,oBAAoB,EAAE,IAAI,EAqUtC,CAAC;AAMF,wBAAsB,eAAe,CACnC,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAC5B,OAAO,CAAC,OAAO,CAAC,CAkJlB"}