phenoml 17.7.0 → 17.9.0

package/dist/cjs/api/resources/construe/resources/codes/client/Client.d.ts

@@ -16,6 +16,9 @@ export declare class CodesClient {
     /**
      * Converts natural language text into structured medical codes.
      *
+     * Pass `system.version` to select a specific code system version, for example
+     * `umls-2026aa` for UMLS 2026AA-backed systems.
+     *
      * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
      *
      * @param {phenoml.construe.ExtractRequest} request
@@ -39,6 +42,18 @@ export declare class CodesClient {
      *
      * @example
      *     await client.construe.codes.extract({
+     *         text: "Patient has type 2 diabetes mellitus with diabetic chronic kidney disease.",
+     *         system: {
+     *             name: "ICD-10-CM",
+     *             version: "umls-2026aa"
+     *         },
+     *         config: {
+     *             validation_method: "simple"
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.codes.extract({
      *         text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
      *         system: {
      *             name: "SNOMED_CT_US_LITE",
@@ -94,6 +109,38 @@ export declare class CodesClient {
      */
     extract(request: phenoml.construe.ExtractRequest, requestOptions?: CodesClient.RequestOptions): core.HttpResponsePromise<phenoml.construe.ExtractCodesResult>;
     private __extract;
+    /**
+     * **Alpha:** phenocr is an alpha feature. The API contract — request
+     * parameters and response shape — may change as its internals evolve, and
+     * results may vary between releases. Do not depend on it for production
+     * workloads yet.
+     *
+     * Extracts medical codes from natural language clinical text using phenocr.
+     *
+     * Supported code systems: HPO, ICD-10-CM, and SNOMED_CT_US. The code
+     * system name and version are both required.
+     *
+     * @param {phenoml.construe.PhenoCrRequest} request
+     * @param {CodesClient.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.construe.BadRequestError}
+     * @throws {@link phenoml.construe.UnauthorizedError}
+     * @throws {@link phenoml.construe.NotFoundError}
+     * @throws {@link phenoml.construe.InternalServerError}
+     * @throws {@link phenoml.construe.ServiceUnavailableError}
+     * @throws {@link phenoml.construe.GatewayTimeoutError}
+     *
+     * @example
+     *     await client.construe.codes.phenocr({
+     *         text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
+     *         system: {
+     *             name: "HPO",
+     *             version: "umls-2026AA"
+     *         }
+     *     })
+     */
+    phenocr(request: phenoml.construe.PhenoCrRequest, requestOptions?: CodesClient.RequestOptions): core.HttpResponsePromise<phenoml.construe.ExtractCodesResult>;
+    private __phenocr;
     /**
      * Returns a paginated list of all codes in the specified code system from the terminology server.
      *

package/dist/cjs/api/resources/construe/resources/codes/client/Client.js

@@ -47,6 +47,7 @@ exports.CodesClient = void 0;
 const BaseClient_js_1 = require("../../../../../../BaseClient.js");
 const headers_js_1 = require("../../../../../../core/headers.js");
 const core = __importStar(require("../../../../../../core/index.js"));
+const requestBody_js_1 = require("../../../../../../core/requestBody.js");
 const environments = __importStar(require("../../../../../../environments.js"));
 const handleNonStatusCodeError_js_1 = require("../../../../../../errors/handleNonStatusCodeError.js");
 const errors = __importStar(require("../../../../../../errors/index.js"));
@@ -61,6 +62,9 @@ class CodesClient {
     /**
      * Converts natural language text into structured medical codes.
      *
+     * Pass `system.version` to select a specific code system version, for example
+     * `umls-2026aa` for UMLS 2026AA-backed systems.
+     *
      * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
      *
      * @param {phenoml.construe.ExtractRequest} request
@@ -84,6 +88,18 @@ class CodesClient {
      *
      * @example
      *     await client.construe.codes.extract({
+     *         text: "Patient has type 2 diabetes mellitus with diabetic chronic kidney disease.",
+     *         system: {
+     *             name: "ICD-10-CM",
+     *             version: "umls-2026aa"
+     *         },
+     *         config: {
+     *             validation_method: "simple"
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.codes.extract({
      *         text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
      *         system: {
      *             name: "SNOMED_CT_US_LITE",
@@ -152,7 +168,7 @@ class CodesClient {
                 contentType: "application/json",
                 queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
-                body: request,
+                body: (0, requestBody_js_1.mergeAdditionalBodyParameters)(request, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -187,6 +203,86 @@ class CodesClient {
             return (0, handleNonStatusCodeError_js_1.handleNonStatusCodeError)(_response.error, _response.rawResponse, "POST", "/construe/extract");
         });
     }
+    /**
+     * **Alpha:** phenocr is an alpha feature. The API contract — request
+     * parameters and response shape — may change as its internals evolve, and
+     * results may vary between releases. Do not depend on it for production
+     * workloads yet.
+     *
+     * Extracts medical codes from natural language clinical text using phenocr.
+     *
+     * Supported code systems: HPO, ICD-10-CM, and SNOMED_CT_US. The code
+     * system name and version are both required.
+     *
+     * @param {phenoml.construe.PhenoCrRequest} request
+     * @param {CodesClient.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.construe.BadRequestError}
+     * @throws {@link phenoml.construe.UnauthorizedError}
+     * @throws {@link phenoml.construe.NotFoundError}
+     * @throws {@link phenoml.construe.InternalServerError}
+     * @throws {@link phenoml.construe.ServiceUnavailableError}
+     * @throws {@link phenoml.construe.GatewayTimeoutError}
+     *
+     * @example
+     *     await client.construe.codes.phenocr({
+     *         text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
+     *         system: {
+     *             name: "HPO",
+     *             version: "umls-2026AA"
+     *         }
+     *     })
+     */
+    phenocr(request, requestOptions) {
+        return core.HttpResponsePromise.fromPromise(this.__phenocr(request, requestOptions));
+    }
+    __phenocr(request, requestOptions) {
+        return __awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
+            const _authRequest = yield this._options.authProvider.getAuthRequest();
+            const _headers = (0, headers_js_1.mergeHeaders)(_authRequest.headers, (_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/phenocr"),
+                method: "POST",
+                headers: _headers,
+                contentType: "application/json",
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
+                requestType: "json",
+                body: (0, requestBody_js_1.mergeAdditionalBodyParameters)(request, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
+                timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
+                maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
+                abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+                fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
+                logging: this._options.logging,
+            });
+            if (_response.ok) {
+                return { data: _response.body, rawResponse: _response.rawResponse };
+            }
+            if (_response.error.reason === "status-code") {
+                switch (_response.error.statusCode) {
+                    case 400:
+                        throw new phenoml.construe.BadRequestError(_response.error.body, _response.rawResponse);
+                    case 401:
+                        throw new phenoml.construe.UnauthorizedError(_response.error.body, _response.rawResponse);
+                    case 404:
+                        throw new phenoml.construe.NotFoundError(_response.error.body, _response.rawResponse);
+                    case 500:
+                        throw new phenoml.construe.InternalServerError(_response.error.body, _response.rawResponse);
+                    case 503:
+                        throw new phenoml.construe.ServiceUnavailableError(_response.error.body, _response.rawResponse);
+                    case 504:
+                        throw new phenoml.construe.GatewayTimeoutError(_response.error.body, _response.rawResponse);
+                    default:
+                        throw new errors.phenomlError({
+                            statusCode: _response.error.statusCode,
+                            body: _response.error.body,
+                            rawResponse: _response.rawResponse,
+                        });
+                }
+            }
+            return (0, handleNonStatusCodeError_js_1.handleNonStatusCodeError)(_response.error, _response.rawResponse, "POST", "/construe/phenocr");
+        });
+    }
     /**
      * Returns a paginated list of all codes in the specified code system from the terminology server.
      *

package/dist/cjs/api/resources/construe/resources/codes/client/requests/CodesListRequest.d.ts

@@ -7,7 +7,7 @@
  *     }
  */
 export interface CodesListRequest {
-    /** Specific version of the code system. Required if multiple versions exist. */
+    /** Specific version of the code system, such as `umls-2026aa`. */
     version?: string;
     /** Pagination cursor from previous response */
     cursor?: string;

package/dist/cjs/api/resources/construe/resources/codes/client/requests/ExtractRequest.d.ts

@@ -11,6 +11,18 @@ import type * as phenoml from "../../../../../../index.js";
  *
  * @example
  *     {
+ *         text: "Patient has type 2 diabetes mellitus with diabetic chronic kidney disease.",
+ *         system: {
+ *             name: "ICD-10-CM",
+ *             version: "umls-2026aa"
+ *         },
+ *         config: {
+ *             validation_method: "simple"
+ *         }
+ *     }
+ *
+ * @example
+ *     {
  *         text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
  *         system: {
  *             name: "SNOMED_CT_US_LITE",

package/dist/cjs/api/resources/construe/resources/codes/client/requests/LookupRequest.d.ts

@@ -5,6 +5,6 @@
  *     }
  */
 export interface LookupRequest {
-    /** Specific version of the code system */
+    /** Specific version of the code system, such as `umls-2026aa`. */
     version?: string;
 }

package/dist/cjs/api/resources/construe/resources/codes/client/requests/PhenoCrRequest.d.ts

@@ -0,0 +1,16 @@
+import type * as phenoml from "../../../../../../index.js";
+/**
+ * @example
+ *     {
+ *         text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
+ *         system: {
+ *             name: "HPO",
+ *             version: "umls-2026AA"
+ *         }
+ *     }
+ */
+export interface PhenoCrRequest {
+    /** Natural language text to extract codes from */
+    text: string;
+    system: phenoml.construe.PhenocrExtractRequestSystem;
+}

package/dist/cjs/api/resources/construe/resources/codes/client/requests/SearchSemanticRequest.d.ts

@@ -9,7 +9,7 @@
 export interface SearchSemanticRequest {
     /** Natural language text to find semantically similar codes for */
     text: string;
-    /** Specific version of the code system */
+    /** Specific version of the code system, such as `umls-2026aa`. */
     version?: string;
     /** Maximum number of results (default 10, max 50) */
     limit?: number;

package/dist/cjs/api/resources/construe/resources/codes/client/requests/SearchTextRequest.d.ts

@@ -9,7 +9,7 @@
 export interface SearchTextRequest {
     /** Search query (searches code IDs and descriptions) */
     q: string;
-    /** Specific version of the code system */
+    /** Specific version of the code system, such as `umls-2026aa`. */
     version?: string;
     /** Maximum number of results (default 20, max 100) */
     limit?: number;

package/dist/cjs/api/resources/construe/resources/codes/client/requests/index.d.ts

@@ -1,5 +1,6 @@
 export type { CodesListRequest } from "./CodesListRequest.js";
 export type { ExtractRequest } from "./ExtractRequest.js";
 export type { LookupRequest } from "./LookupRequest.js";
+export type { PhenoCrRequest } from "./PhenoCrRequest.js";
 export type { SearchSemanticRequest } from "./SearchSemanticRequest.js";
 export type { SearchTextRequest } from "./SearchTextRequest.js";

package/dist/cjs/api/resources/construe/types/ExtractRequestSystem.d.ts

@@ -3,13 +3,16 @@ export interface ExtractRequestSystem {
      * Code system name. Can be a built-in system or a custom system name.
      *
      * Built-in systems:
-     * * SNOMED_CT_US_LITE - version 20240901
-     * * RXNORM - version 11042024
-     * * ICD-10-CM - version 2025
-     * * ICD-10-PCS - version 2025
-     * * LOINC - version 2.78
-     * * HPO - version 2025
-     * * CPT - version 2025
+     * * CPT
+     * * HCPCS
+     * * HPO
+     * * ICD-10
+     * * ICD-10-CM
+     * * ICD-10-PCS
+     * * LOINC
+     * * RXNORM
+     * * SNOMED_CT_US
+     * * SNOMED_CT_US_LITE
      *
      * Custom systems:
      * * Any valid system name uploaded via /construe/upload. Requires a paid plan.
@@ -17,6 +20,6 @@ export interface ExtractRequestSystem {
      * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
      */
     name?: string | undefined;
-    /** Code system version. Must match the version available in your environment. */
+    /** Specific code system version. */
     version?: string | undefined;
 }

package/dist/cjs/api/resources/construe/types/PhenocrExtractRequestSystem.d.ts

@@ -0,0 +1,6 @@
+export interface PhenocrExtractRequestSystem {
+    /** Code system name. Supported by phenocr: HPO, ICD-10-CM, SNOMED_CT_US. */
+    name: string;
+    /** Code system version to run against. */
+    version: string;
+}

package/dist/cjs/api/resources/construe/types/PhenocrExtractRequestSystem.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/construe/types/index.d.ts

@@ -14,6 +14,7 @@ export * from "./GetCodeResponse.js";
 export * from "./GetCodeSystemDetailResponse.js";
 export * from "./ListCodeSystemsResponse.js";
 export * from "./ListCodesResponse.js";
+export * from "./PhenocrExtractRequestSystem.js";
 export * from "./SemanticSearchResponse.js";
 export * from "./SemanticSearchResult.js";
 export * from "./TextSearchResponse.js";

package/dist/cjs/api/resources/construe/types/index.js

@@ -30,6 +30,7 @@ __exportStar(require("./GetCodeResponse.js"), exports);
 __exportStar(require("./GetCodeSystemDetailResponse.js"), exports);
 __exportStar(require("./ListCodeSystemsResponse.js"), exports);
 __exportStar(require("./ListCodesResponse.js"), exports);
+__exportStar(require("./PhenocrExtractRequestSystem.js"), exports);
 __exportStar(require("./SemanticSearchResponse.js"), exports);
 __exportStar(require("./SemanticSearchResult.js"), exports);
 __exportStar(require("./TextSearchResponse.js"), exports);

package/dist/cjs/api/resources/fhir/client/Client.js

@@ -47,6 +47,7 @@ exports.FhirClient = void 0;
 const BaseClient_js_1 = require("../../../../BaseClient.js");
 const headers_js_1 = require("../../../../core/headers.js");
 const core = __importStar(require("../../../../core/index.js"));
+const requestBody_js_1 = require("../../../../core/requestBody.js");
 const environments = __importStar(require("../../../../environments.js"));
 const handleNonStatusCodeError_js_1 = require("../../../../errors/handleNonStatusCodeError.js");
 const errors = __importStar(require("../../../../errors/index.js"));
@@ -168,7 +169,7 @@ class FhirClient {
                 contentType: "application/fhir+json",
                 queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
-                body: _body,
+                body: (0, requestBody_js_1.mergeAdditionalBodyParameters)(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -233,7 +234,7 @@ class FhirClient {
                 contentType: "application/fhir+json",
                 queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
-                body: _body,
+                body: (0, requestBody_js_1.mergeAdditionalBodyParameters)(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -417,7 +418,7 @@ class FhirClient {
                 contentType: "application/json-patch+json",
                 queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
-                body: _body,
+                body: (0, requestBody_js_1.mergeAdditionalBodyParameters)(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -511,7 +512,7 @@ class FhirClient {
                 contentType: "application/fhir+json",
                 queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
-                body: _body,
+                body: (0, requestBody_js_1.mergeAdditionalBodyParameters)(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,

package/dist/cjs/api/resources/fhir2Omop/client/Client.js

@@ -47,6 +47,7 @@ exports.Fhir2OmopClient = void 0;
 const BaseClient_js_1 = require("../../../../BaseClient.js");
 const headers_js_1 = require("../../../../core/headers.js");
 const core = __importStar(require("../../../../core/index.js"));
+const requestBody_js_1 = require("../../../../core/requestBody.js");
 const environments = __importStar(require("../../../../environments.js"));
 const handleNonStatusCodeError_js_1 = require("../../../../errors/handleNonStatusCodeError.js");
 const errors = __importStar(require("../../../../errors/index.js"));
@@ -201,7 +202,7 @@ class Fhir2OmopClient {
                 contentType: "application/json",
                 queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
-                body: request,
+                body: (0, requestBody_js_1.mergeAdditionalBodyParameters)(request, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,

package/dist/cjs/api/resources/fhir2Omop/errors/BadRequestError.js

@@ -48,7 +48,7 @@ class BadRequestError extends errors.phenomlError {
         if (Error.captureStackTrace) {
             Error.captureStackTrace(this, this.constructor);
         }
-        this.name = this.constructor.name;
+        this.name = "BadRequestError";
     }
 }
 exports.BadRequestError = BadRequestError;

package/dist/cjs/api/resources/fhir2Omop/errors/InternalServerError.js

@@ -48,7 +48,7 @@ class InternalServerError extends errors.phenomlError {
         if (Error.captureStackTrace) {
             Error.captureStackTrace(this, this.constructor);
         }
-        this.name = this.constructor.name;
+        this.name = "InternalServerError";
     }
 }
 exports.InternalServerError = InternalServerError;

package/dist/cjs/api/resources/fhir2Omop/errors/ServiceUnavailableError.js

@@ -48,7 +48,7 @@ class ServiceUnavailableError extends errors.phenomlError {
         if (Error.captureStackTrace) {
             Error.captureStackTrace(this, this.constructor);
         }
-        this.name = this.constructor.name;
+        this.name = "ServiceUnavailableError";
     }
 }
 exports.ServiceUnavailableError = ServiceUnavailableError;

package/dist/cjs/api/resources/fhir2Omop/errors/UnauthorizedError.js

@@ -48,7 +48,7 @@ class UnauthorizedError extends errors.phenomlError {
         if (Error.captureStackTrace) {
             Error.captureStackTrace(this, this.constructor);
         }
-        this.name = this.constructor.name;
+        this.name = "UnauthorizedError";
     }
 }
 exports.UnauthorizedError = UnauthorizedError;

package/dist/cjs/api/resources/fhir2Omop/types/CareSiteRow.d.ts

@@ -0,0 +1,8 @@
+export interface CareSiteRow {
+    care_site_id?: number | undefined;
+    care_site_name?: string | undefined;
+    place_of_service_concept_id?: number | undefined;
+    location_id?: number | undefined;
+    care_site_source_value?: string | undefined;
+    place_of_service_source_value?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/CareSiteRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.d.ts

@@ -7,6 +7,7 @@ export interface ConditionOccurrenceRow {
     condition_end_date?: string | undefined;
     condition_type_concept_id?: number | undefined;
     visit_occurrence_id?: number | undefined;
+    provider_id?: number | undefined;
     condition_source_value?: string | undefined;
     condition_source_concept_id?: number | undefined;
     condition_status_source_value?: string | undefined;

package/dist/cjs/api/resources/fhir2Omop/types/DeathRow.d.ts

@@ -0,0 +1,9 @@
+export interface DeathRow {
+    person_id?: number | undefined;
+    death_date?: string | undefined;
+    death_datetime?: string | undefined;
+    death_type_concept_id?: number | undefined;
+    cause_concept_id?: number | undefined;
+    cause_source_value?: string | undefined;
+    cause_source_concept_id?: number | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/DeathRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.d.ts

@@ -9,6 +9,7 @@ export interface DrugExposureRow {
     stop_reason?: string | undefined;
     sig?: string | undefined;
     visit_occurrence_id?: number | undefined;
+    provider_id?: number | undefined;
     drug_source_value?: string | undefined;
     drug_source_concept_id?: number | undefined;
 }

package/dist/cjs/api/resources/fhir2Omop/types/LocationRow.d.ts

@@ -0,0 +1,14 @@
+export interface LocationRow {
+    location_id?: number | undefined;
+    address_1?: string | undefined;
+    address_2?: string | undefined;
+    city?: string | undefined;
+    state?: string | undefined;
+    zip?: string | undefined;
+    county?: string | undefined;
+    location_source_value?: string | undefined;
+    country_concept_id?: number | undefined;
+    country_source_value?: string | undefined;
+    latitude?: number | undefined;
+    longitude?: number | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/LocationRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.d.ts

@@ -13,6 +13,7 @@ export interface MeasurementRow {
     range_low?: number | undefined;
     range_high?: number | undefined;
     visit_occurrence_id?: number | undefined;
+    provider_id?: number | undefined;
     measurement_source_value?: string | undefined;
     measurement_source_concept_id?: number | undefined;
     unit_source_value?: string | undefined;

package/dist/cjs/api/resources/fhir2Omop/types/ObservationPeriodRow.d.ts

@@ -0,0 +1,7 @@
+export interface ObservationPeriodRow {
+    observation_period_id?: number | undefined;
+    person_id?: number | undefined;
+    observation_period_start_date?: string | undefined;
+    observation_period_end_date?: string | undefined;
+    period_type_concept_id?: number | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/ObservationPeriodRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.d.ts

@@ -10,6 +10,7 @@ export interface ObservationRow {
     value_as_concept_id?: number | undefined;
     unit_concept_id?: number | undefined;
     visit_occurrence_id?: number | undefined;
+    provider_id?: number | undefined;
     observation_source_value?: string | undefined;
     observation_source_concept_id?: number | undefined;
     unit_source_value?: string | undefined;

package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.d.ts

@@ -3,7 +3,12 @@ import type * as phenoml from "../../../index.js";
  * OMOP CDM v5.4 rows grouped by destination table.
  */
 export interface OmopTables {
+    location?: phenoml.fhir2Omop.LocationRow[] | undefined;
+    care_site?: phenoml.fhir2Omop.CareSiteRow[] | undefined;
+    provider?: phenoml.fhir2Omop.ProviderRow[] | undefined;
     person?: phenoml.fhir2Omop.PersonRow[] | undefined;
+    death?: phenoml.fhir2Omop.DeathRow[] | undefined;
+    observation_period?: phenoml.fhir2Omop.ObservationPeriodRow[] | undefined;
     visit_occurrence?: phenoml.fhir2Omop.VisitOccurrenceRow[] | undefined;
     condition_occurrence?: phenoml.fhir2Omop.ConditionOccurrenceRow[] | undefined;
     drug_exposure?: phenoml.fhir2Omop.DrugExposureRow[] | undefined;

package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.d.ts

@@ -7,6 +7,7 @@ export interface PersonRow {
     birth_datetime?: string | undefined;
     race_concept_id?: number | undefined;
     ethnicity_concept_id?: number | undefined;
+    location_id?: number | undefined;
     person_source_value?: string | undefined;
     gender_source_value?: string | undefined;
     race_source_value?: string | undefined;

package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.d.ts

@@ -6,6 +6,7 @@ export interface ProcedureOccurrenceRow {
     procedure_datetime?: string | undefined;
     procedure_type_concept_id?: number | undefined;
     visit_occurrence_id?: number | undefined;
+    provider_id?: number | undefined;
     procedure_source_value?: string | undefined;
     procedure_source_concept_id?: number | undefined;
 }

package/dist/cjs/api/resources/fhir2Omop/types/ProviderRow.d.ts

@@ -0,0 +1,15 @@
+export interface ProviderRow {
+    provider_id?: number | undefined;
+    provider_name?: string | undefined;
+    npi?: string | undefined;
+    dea?: string | undefined;
+    specialty_concept_id?: number | undefined;
+    care_site_id?: number | undefined;
+    year_of_birth?: number | undefined;
+    gender_concept_id?: number | undefined;
+    provider_source_value?: string | undefined;
+    specialty_source_value?: string | undefined;
+    specialty_source_concept_id?: number | undefined;
+    gender_source_value?: string | undefined;
+    gender_source_concept_id?: number | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/ProviderRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.d.ts

@@ -7,5 +7,7 @@ export interface VisitOccurrenceRow {
     visit_end_date?: string | undefined;
     visit_end_datetime?: string | undefined;
     visit_type_concept_id?: number | undefined;
+    provider_id?: number | undefined;
+    care_site_id?: number | undefined;
     visit_source_value?: string | undefined;
 }