phenoml 17.7.0 → 17.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (467) hide show
  1. package/dist/cjs/BaseClient.d.ts +12 -0
  2. package/dist/cjs/BaseClient.js +2 -2
  3. package/dist/cjs/Client.d.ts +6 -0
  4. package/dist/cjs/Client.js +20 -10
  5. package/dist/cjs/api/resources/agent/client/Client.js +4 -3
  6. package/dist/cjs/api/resources/agent/errors/BadRequestError.js +1 -1
  7. package/dist/cjs/api/resources/agent/errors/ConflictError.js +1 -1
  8. package/dist/cjs/api/resources/agent/errors/ForbiddenError.js +1 -1
  9. package/dist/cjs/api/resources/agent/errors/GatewayTimeoutError.js +1 -1
  10. package/dist/cjs/api/resources/agent/errors/InternalServerError.js +1 -1
  11. package/dist/cjs/api/resources/agent/errors/NotFoundError.js +1 -1
  12. package/dist/cjs/api/resources/agent/errors/UnauthorizedError.js +1 -1
  13. package/dist/cjs/api/resources/agent/resources/chat/client/Client.js +3 -2
  14. package/dist/cjs/api/resources/agent/resources/prompts/client/Client.js +4 -3
  15. package/dist/cjs/api/resources/authtoken/client/Client.js +2 -1
  16. package/dist/cjs/api/resources/authtoken/errors/BadRequestError.js +1 -1
  17. package/dist/cjs/api/resources/authtoken/errors/InternalServerError.js +1 -1
  18. package/dist/cjs/api/resources/authtoken/errors/UnauthorizedError.js +1 -1
  19. package/dist/cjs/api/resources/cohort/client/Client.js +2 -1
  20. package/dist/cjs/api/resources/cohort/errors/BadRequestError.js +1 -1
  21. package/dist/cjs/api/resources/cohort/errors/InternalServerError.js +1 -1
  22. package/dist/cjs/api/resources/cohort/errors/UnauthorizedError.js +1 -1
  23. package/dist/cjs/api/resources/construe/client/Client.js +2 -1
  24. package/dist/cjs/api/resources/construe/errors/BadRequestError.js +1 -1
  25. package/dist/cjs/api/resources/construe/errors/ConflictError.js +1 -1
  26. package/dist/cjs/api/resources/construe/errors/FailedDependencyError.js +1 -1
  27. package/dist/cjs/api/resources/construe/errors/ForbiddenError.js +1 -1
  28. package/dist/cjs/api/resources/construe/errors/GatewayTimeoutError.js +1 -1
  29. package/dist/cjs/api/resources/construe/errors/InternalServerError.js +1 -1
  30. package/dist/cjs/api/resources/construe/errors/NotFoundError.js +1 -1
  31. package/dist/cjs/api/resources/construe/errors/NotImplementedError.js +1 -1
  32. package/dist/cjs/api/resources/construe/errors/ServiceUnavailableError.js +1 -1
  33. package/dist/cjs/api/resources/construe/errors/UnauthorizedError.js +1 -1
  34. package/dist/cjs/api/resources/construe/resources/codeSystems/client/Client.js +2 -1
  35. package/dist/cjs/api/resources/construe/resources/codeSystems/client/requests/DeleteRequest.d.ts +1 -1
  36. package/dist/cjs/api/resources/construe/resources/codeSystems/client/requests/ExportRequest.d.ts +1 -1
  37. package/dist/cjs/api/resources/construe/resources/codeSystems/client/requests/FindRequest.d.ts +1 -1
  38. package/dist/cjs/api/resources/construe/resources/codes/client/Client.d.ts +47 -0
  39. package/dist/cjs/api/resources/construe/resources/codes/client/Client.js +97 -1
  40. package/dist/cjs/api/resources/construe/resources/codes/client/requests/CodesListRequest.d.ts +1 -1
  41. package/dist/cjs/api/resources/construe/resources/codes/client/requests/ExtractRequest.d.ts +12 -0
  42. package/dist/cjs/api/resources/construe/resources/codes/client/requests/LookupRequest.d.ts +1 -1
  43. package/dist/cjs/api/resources/construe/resources/codes/client/requests/PhenoCrRequest.d.ts +16 -0
  44. package/dist/cjs/api/resources/construe/resources/codes/client/requests/SearchSemanticRequest.d.ts +1 -1
  45. package/dist/cjs/api/resources/construe/resources/codes/client/requests/SearchTextRequest.d.ts +1 -1
  46. package/dist/cjs/api/resources/construe/resources/codes/client/requests/index.d.ts +1 -0
  47. package/dist/cjs/api/resources/construe/types/ExtractRequestSystem.d.ts +11 -8
  48. package/dist/cjs/api/resources/construe/types/PhenocrExtractRequestSystem.d.ts +6 -0
  49. package/dist/cjs/api/resources/construe/types/PhenocrExtractRequestSystem.js +3 -0
  50. package/dist/cjs/api/resources/construe/types/index.d.ts +1 -0
  51. package/dist/cjs/api/resources/construe/types/index.js +1 -0
  52. package/dist/cjs/api/resources/fhir/client/Client.js +5 -4
  53. package/dist/cjs/api/resources/fhir2Omop/client/Client.js +2 -1
  54. package/dist/cjs/api/resources/fhir2Omop/errors/BadRequestError.js +1 -1
  55. package/dist/cjs/api/resources/fhir2Omop/errors/InternalServerError.js +1 -1
  56. package/dist/cjs/api/resources/fhir2Omop/errors/ServiceUnavailableError.js +1 -1
  57. package/dist/cjs/api/resources/fhir2Omop/errors/UnauthorizedError.js +1 -1
  58. package/dist/cjs/api/resources/fhir2Omop/types/CareSiteRow.d.ts +8 -0
  59. package/dist/cjs/api/resources/fhir2Omop/types/CareSiteRow.js +3 -0
  60. package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.d.ts +1 -0
  61. package/dist/cjs/api/resources/fhir2Omop/types/DeathRow.d.ts +9 -0
  62. package/dist/cjs/api/resources/fhir2Omop/types/DeathRow.js +3 -0
  63. package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.d.ts +1 -0
  64. package/dist/cjs/api/resources/fhir2Omop/types/LocationRow.d.ts +14 -0
  65. package/dist/cjs/api/resources/fhir2Omop/types/LocationRow.js +3 -0
  66. package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.d.ts +1 -0
  67. package/dist/cjs/api/resources/fhir2Omop/types/ObservationPeriodRow.d.ts +7 -0
  68. package/dist/cjs/api/resources/fhir2Omop/types/ObservationPeriodRow.js +3 -0
  69. package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.d.ts +1 -0
  70. package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.d.ts +5 -0
  71. package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.d.ts +1 -0
  72. package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.d.ts +1 -0
  73. package/dist/cjs/api/resources/fhir2Omop/types/ProviderRow.d.ts +15 -0
  74. package/dist/cjs/api/resources/fhir2Omop/types/ProviderRow.js +3 -0
  75. package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.d.ts +2 -0
  76. package/dist/cjs/api/resources/fhir2Omop/types/index.d.ts +5 -0
  77. package/dist/cjs/api/resources/fhir2Omop/types/index.js +5 -0
  78. package/dist/cjs/api/resources/fhirProvider/client/Client.js +2 -1
  79. package/dist/cjs/api/resources/fhirProvider/errors/BadRequestError.js +1 -1
  80. package/dist/cjs/api/resources/fhirProvider/errors/ForbiddenError.js +1 -1
  81. package/dist/cjs/api/resources/fhirProvider/errors/InternalServerError.js +1 -1
  82. package/dist/cjs/api/resources/fhirProvider/errors/NotFoundError.js +1 -1
  83. package/dist/cjs/api/resources/fhirProvider/errors/UnauthorizedError.js +1 -1
  84. package/dist/cjs/api/resources/fhirProvider/resources/authConfig/client/Client.js +4 -3
  85. package/dist/cjs/api/resources/implementationGuides/client/Client.d.ts +12 -0
  86. package/dist/cjs/api/resources/implementationGuides/client/Client.js +16 -0
  87. package/dist/cjs/api/resources/implementationGuides/client/index.d.ts +1 -0
  88. package/dist/cjs/api/resources/implementationGuides/client/index.js +2 -0
  89. package/dist/cjs/api/resources/implementationGuides/errors/BadRequestError.d.ts +5 -0
  90. package/dist/cjs/api/resources/implementationGuides/errors/BadRequestError.js +54 -0
  91. package/dist/cjs/api/resources/implementationGuides/errors/ForbiddenError.d.ts +5 -0
  92. package/dist/cjs/api/resources/implementationGuides/errors/ForbiddenError.js +54 -0
  93. package/dist/cjs/api/resources/implementationGuides/errors/InternalServerError.d.ts +5 -0
  94. package/dist/cjs/api/resources/implementationGuides/errors/InternalServerError.js +54 -0
  95. package/dist/cjs/api/resources/implementationGuides/errors/NotFoundError.d.ts +5 -0
  96. package/dist/cjs/api/resources/implementationGuides/errors/NotFoundError.js +54 -0
  97. package/dist/cjs/api/resources/implementationGuides/errors/UnauthorizedError.d.ts +5 -0
  98. package/dist/cjs/api/resources/implementationGuides/errors/UnauthorizedError.js +54 -0
  99. package/dist/cjs/api/resources/implementationGuides/errors/index.d.ts +5 -0
  100. package/dist/cjs/api/resources/implementationGuides/errors/index.js +21 -0
  101. package/dist/cjs/api/resources/implementationGuides/exports.d.ts +3 -0
  102. package/dist/cjs/api/resources/implementationGuides/exports.js +22 -0
  103. package/dist/cjs/api/resources/implementationGuides/index.d.ts +4 -0
  104. package/dist/cjs/api/resources/implementationGuides/index.js +20 -0
  105. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/Client.d.ts +91 -0
  106. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/Client.js +316 -0
  107. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/index.d.ts +1 -0
  108. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/index.js +17 -0
  109. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/requests/UpdateImplementationGuideRequest.d.ts +8 -0
  110. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/requests/UpdateImplementationGuideRequest.js +3 -0
  111. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/requests/index.d.ts +1 -0
  112. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/client/requests/index.js +2 -0
  113. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/exports.d.ts +2 -0
  114. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/exports.js +21 -0
  115. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/index.d.ts +1 -0
  116. package/dist/cjs/api/resources/implementationGuides/resources/implementationGuides/index.js +17 -0
  117. package/dist/cjs/api/resources/implementationGuides/resources/index.d.ts +2 -0
  118. package/dist/cjs/api/resources/implementationGuides/resources/index.js +41 -0
  119. package/dist/cjs/api/resources/implementationGuides/types/ImplementationGuideDetail.d.ts +5 -0
  120. package/dist/cjs/api/resources/implementationGuides/types/ImplementationGuideDetail.js +3 -0
  121. package/dist/cjs/api/resources/implementationGuides/types/ImplementationGuideListResponse.d.ts +4 -0
  122. package/dist/cjs/api/resources/implementationGuides/types/ImplementationGuideListResponse.js +3 -0
  123. package/dist/cjs/api/resources/implementationGuides/types/ImplementationGuideSummary.d.ts +15 -0
  124. package/dist/cjs/api/resources/implementationGuides/types/ImplementationGuideSummary.js +3 -0
  125. package/dist/cjs/api/resources/implementationGuides/types/index.d.ts +3 -0
  126. package/dist/cjs/api/resources/implementationGuides/types/index.js +19 -0
  127. package/dist/cjs/api/resources/index.d.ts +2 -0
  128. package/dist/cjs/api/resources/index.js +3 -1
  129. package/dist/cjs/api/resources/lang2Fhir/client/Client.d.ts +8 -0
  130. package/dist/cjs/api/resources/lang2Fhir/client/Client.js +15 -6
  131. package/dist/cjs/api/resources/lang2Fhir/client/requests/index.d.ts +0 -1
  132. package/dist/cjs/api/resources/lang2Fhir/errors/BadRequestError.js +1 -1
  133. package/dist/cjs/api/resources/lang2Fhir/errors/ClientClosedRequestError.js +1 -1
  134. package/dist/cjs/api/resources/lang2Fhir/errors/ForbiddenError.js +1 -1
  135. package/dist/cjs/api/resources/lang2Fhir/errors/GatewayTimeoutError.js +1 -1
  136. package/dist/cjs/api/resources/lang2Fhir/errors/InternalServerError.js +1 -1
  137. package/dist/cjs/api/resources/lang2Fhir/errors/NotFoundError.js +1 -1
  138. package/dist/cjs/api/resources/lang2Fhir/errors/UnauthorizedError.js +1 -1
  139. package/dist/cjs/api/resources/lang2Fhir/errors/UnprocessableEntityError.js +1 -1
  140. package/dist/cjs/api/resources/lang2Fhir/types/CreateMultiResponse.d.ts +2 -0
  141. package/dist/cjs/api/resources/lang2Fhir/{client/requests → types}/ProfileUploadRequest.d.ts +2 -10
  142. package/dist/cjs/api/resources/lang2Fhir/types/ProfileUploadRequest.js +3 -0
  143. package/dist/cjs/api/resources/lang2Fhir/types/index.d.ts +1 -0
  144. package/dist/cjs/api/resources/lang2Fhir/types/index.js +1 -0
  145. package/dist/cjs/api/resources/profiles/client/Client.d.ts +12 -0
  146. package/dist/cjs/api/resources/profiles/client/Client.js +16 -0
  147. package/dist/cjs/api/resources/profiles/client/index.d.ts +1 -0
  148. package/dist/cjs/api/resources/profiles/client/index.js +2 -0
  149. package/dist/cjs/api/resources/profiles/errors/BadRequestError.d.ts +5 -0
  150. package/dist/cjs/api/resources/profiles/errors/BadRequestError.js +54 -0
  151. package/dist/cjs/api/resources/profiles/errors/ForbiddenError.d.ts +5 -0
  152. package/dist/cjs/api/resources/profiles/errors/ForbiddenError.js +54 -0
  153. package/dist/cjs/api/resources/profiles/errors/InternalServerError.d.ts +5 -0
  154. package/dist/cjs/api/resources/profiles/errors/InternalServerError.js +54 -0
  155. package/dist/cjs/api/resources/profiles/errors/NotFoundError.d.ts +5 -0
  156. package/dist/cjs/api/resources/profiles/errors/NotFoundError.js +54 -0
  157. package/dist/cjs/api/resources/profiles/errors/UnauthorizedError.d.ts +5 -0
  158. package/dist/cjs/api/resources/profiles/errors/UnauthorizedError.js +54 -0
  159. package/dist/cjs/api/resources/profiles/errors/index.d.ts +5 -0
  160. package/dist/cjs/api/resources/profiles/errors/index.js +21 -0
  161. package/dist/cjs/api/resources/profiles/exports.d.ts +3 -0
  162. package/dist/cjs/api/resources/profiles/exports.js +22 -0
  163. package/dist/cjs/api/resources/profiles/index.d.ts +4 -0
  164. package/dist/cjs/api/resources/profiles/index.js +20 -0
  165. package/dist/cjs/api/resources/profiles/resources/index.d.ts +2 -0
  166. package/dist/cjs/api/resources/profiles/resources/index.js +41 -0
  167. package/dist/cjs/api/resources/profiles/resources/profiles/client/Client.d.ts +127 -0
  168. package/dist/cjs/api/resources/profiles/resources/profiles/client/Client.js +397 -0
  169. package/dist/cjs/api/resources/profiles/resources/profiles/client/index.d.ts +1 -0
  170. package/dist/cjs/api/resources/profiles/resources/profiles/client/index.js +17 -0
  171. package/dist/cjs/api/resources/profiles/resources/profiles/client/requests/ListRequest.d.ts +10 -0
  172. package/dist/cjs/api/resources/profiles/resources/profiles/client/requests/ListRequest.js +3 -0
  173. package/dist/cjs/api/resources/profiles/resources/profiles/client/requests/index.d.ts +1 -0
  174. package/dist/cjs/api/resources/profiles/resources/profiles/client/requests/index.js +2 -0
  175. package/dist/cjs/api/resources/profiles/resources/profiles/exports.d.ts +2 -0
  176. package/dist/cjs/api/resources/profiles/resources/profiles/exports.js +21 -0
  177. package/dist/cjs/api/resources/profiles/resources/profiles/index.d.ts +1 -0
  178. package/dist/cjs/api/resources/profiles/resources/profiles/index.js +17 -0
  179. package/dist/cjs/api/resources/profiles/types/FhirResource.d.ts +4 -0
  180. package/dist/cjs/api/resources/profiles/types/FhirResource.js +3 -0
  181. package/dist/cjs/api/resources/profiles/types/ProfileGetResponse.d.ts +5 -0
  182. package/dist/cjs/api/resources/profiles/types/ProfileGetResponse.js +3 -0
  183. package/dist/cjs/api/resources/profiles/types/ProfileListResponse.d.ts +4 -0
  184. package/dist/cjs/api/resources/profiles/types/ProfileListResponse.js +3 -0
  185. package/dist/cjs/api/resources/profiles/types/ProfileSummary.d.ts +26 -0
  186. package/dist/cjs/api/resources/profiles/types/ProfileSummary.js +12 -0
  187. package/dist/cjs/api/resources/profiles/types/ProfileUploadRequest.d.ts +7 -0
  188. package/dist/cjs/api/resources/profiles/types/ProfileUploadRequest.js +3 -0
  189. package/dist/cjs/api/resources/profiles/types/index.d.ts +5 -0
  190. package/dist/cjs/api/resources/profiles/types/index.js +21 -0
  191. package/dist/cjs/api/resources/summary/client/Client.js +2 -1
  192. package/dist/cjs/api/resources/summary/errors/BadRequestError.js +1 -1
  193. package/dist/cjs/api/resources/summary/errors/ForbiddenError.js +1 -1
  194. package/dist/cjs/api/resources/summary/errors/InternalServerError.js +1 -1
  195. package/dist/cjs/api/resources/summary/errors/NotFoundError.js +1 -1
  196. package/dist/cjs/api/resources/summary/errors/UnauthorizedError.js +1 -1
  197. package/dist/cjs/api/resources/summary/resources/templates/client/Client.js +3 -2
  198. package/dist/cjs/api/resources/tools/client/Client.js +5 -4
  199. package/dist/cjs/api/resources/tools/errors/BadRequestError.js +1 -1
  200. package/dist/cjs/api/resources/tools/errors/ForbiddenError.js +1 -1
  201. package/dist/cjs/api/resources/tools/errors/InternalServerError.js +1 -1
  202. package/dist/cjs/api/resources/tools/errors/NotFoundError.js +1 -1
  203. package/dist/cjs/api/resources/tools/errors/UnauthorizedError.js +1 -1
  204. package/dist/cjs/api/resources/tools/resources/mcpServers/client/Client.js +2 -1
  205. package/dist/cjs/api/resources/voice/errors/BadGatewayError.js +1 -1
  206. package/dist/cjs/api/resources/voice/errors/BadRequestError.js +1 -1
  207. package/dist/cjs/api/resources/voice/errors/ContentTooLargeError.js +1 -1
  208. package/dist/cjs/api/resources/voice/errors/GatewayTimeoutError.js +1 -1
  209. package/dist/cjs/api/resources/voice/errors/PaymentRequiredError.js +1 -1
  210. package/dist/cjs/api/resources/voice/errors/ServiceUnavailableError.js +1 -1
  211. package/dist/cjs/api/resources/voice/errors/UnauthorizedError.js +1 -1
  212. package/dist/cjs/api/resources/workflows/client/Client.js +4 -3
  213. package/dist/cjs/api/resources/workflows/errors/BadRequestError.js +1 -1
  214. package/dist/cjs/api/resources/workflows/errors/ForbiddenError.js +1 -1
  215. package/dist/cjs/api/resources/workflows/errors/GatewayTimeoutError.js +1 -1
  216. package/dist/cjs/api/resources/workflows/errors/InternalServerError.js +1 -1
  217. package/dist/cjs/api/resources/workflows/errors/NotFoundError.js +1 -1
  218. package/dist/cjs/api/resources/workflows/errors/UnauthorizedError.js +1 -1
  219. package/dist/cjs/core/file/file.js +3 -0
  220. package/dist/cjs/core/requestBody.d.ts +12 -0
  221. package/dist/cjs/core/requestBody.js +26 -0
  222. package/dist/cjs/core/stream/Stream.d.ts +45 -1
  223. package/dist/cjs/core/stream/Stream.js +323 -84
  224. package/dist/cjs/core/stream/index.d.ts +1 -0
  225. package/dist/cjs/core/url/qs.js +2 -2
  226. package/dist/cjs/errors/phenomlError.d.ts +1 -0
  227. package/dist/cjs/errors/phenomlError.js +5 -1
  228. package/dist/cjs/errors/phenomlTimeoutError.d.ts +2 -2
  229. package/dist/cjs/errors/phenomlTimeoutError.js +40 -6
  230. package/dist/cjs/version.d.ts +1 -1
  231. package/dist/cjs/version.js +1 -1
  232. package/dist/esm/BaseClient.d.mts +12 -0
  233. package/dist/esm/BaseClient.mjs +2 -2
  234. package/dist/esm/Client.d.mts +6 -0
  235. package/dist/esm/Client.mjs +10 -0
  236. package/dist/esm/api/resources/agent/client/Client.mjs +4 -3
  237. package/dist/esm/api/resources/agent/errors/BadRequestError.mjs +1 -1
  238. package/dist/esm/api/resources/agent/errors/ConflictError.mjs +1 -1
  239. package/dist/esm/api/resources/agent/errors/ForbiddenError.mjs +1 -1
  240. package/dist/esm/api/resources/agent/errors/GatewayTimeoutError.mjs +1 -1
  241. package/dist/esm/api/resources/agent/errors/InternalServerError.mjs +1 -1
  242. package/dist/esm/api/resources/agent/errors/NotFoundError.mjs +1 -1
  243. package/dist/esm/api/resources/agent/errors/UnauthorizedError.mjs +1 -1
  244. package/dist/esm/api/resources/agent/resources/chat/client/Client.mjs +3 -2
  245. package/dist/esm/api/resources/agent/resources/prompts/client/Client.mjs +4 -3
  246. package/dist/esm/api/resources/authtoken/client/Client.mjs +2 -1
  247. package/dist/esm/api/resources/authtoken/errors/BadRequestError.mjs +1 -1
  248. package/dist/esm/api/resources/authtoken/errors/InternalServerError.mjs +1 -1
  249. package/dist/esm/api/resources/authtoken/errors/UnauthorizedError.mjs +1 -1
  250. package/dist/esm/api/resources/cohort/client/Client.mjs +2 -1
  251. package/dist/esm/api/resources/cohort/errors/BadRequestError.mjs +1 -1
  252. package/dist/esm/api/resources/cohort/errors/InternalServerError.mjs +1 -1
  253. package/dist/esm/api/resources/cohort/errors/UnauthorizedError.mjs +1 -1
  254. package/dist/esm/api/resources/construe/client/Client.mjs +2 -1
  255. package/dist/esm/api/resources/construe/errors/BadRequestError.mjs +1 -1
  256. package/dist/esm/api/resources/construe/errors/ConflictError.mjs +1 -1
  257. package/dist/esm/api/resources/construe/errors/FailedDependencyError.mjs +1 -1
  258. package/dist/esm/api/resources/construe/errors/ForbiddenError.mjs +1 -1
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  450. package/dist/esm/core/file/file.mjs +3 -0
  451. package/dist/esm/core/requestBody.d.mts +12 -0
  452. package/dist/esm/core/requestBody.mjs +23 -0
  453. package/dist/esm/core/stream/Stream.d.mts +45 -1
  454. package/dist/esm/core/stream/Stream.mjs +323 -84
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  456. package/dist/esm/core/url/qs.mjs +2 -2
  457. package/dist/esm/errors/phenomlError.d.mts +1 -0
  458. package/dist/esm/errors/phenomlError.mjs +5 -1
  459. package/dist/esm/errors/phenomlTimeoutError.d.mts +2 -2
  460. package/dist/esm/errors/phenomlTimeoutError.mjs +7 -6
  461. package/dist/esm/version.d.mts +1 -1
  462. package/dist/esm/version.mjs +1 -1
  463. package/openapi/openapi.json +1224 -150
  464. package/package.json +23 -1
  465. package/reference.md +772 -71
  466. /package/dist/cjs/api/resources/{lang2Fhir/client/requests/ProfileUploadRequest.js → construe/resources/codes/client/requests/PhenoCrRequest.js} +0 -0
  467. /package/dist/esm/api/resources/{lang2Fhir/client/requests/ProfileUploadRequest.mjs → construe/resources/codes/client/requests/PhenoCrRequest.mjs} +0 -0
@@ -16,6 +16,9 @@ export declare class CodesClient {
16
16
  /**
17
17
  * Converts natural language text into structured medical codes.
18
18
  *
19
+ * Pass `system.version` to select a specific code system version, for example
20
+ * `umls-2026aa` for UMLS 2026AA-backed systems.
21
+ *
19
22
  * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
20
23
  *
21
24
  * @param {phenoml.construe.ExtractRequest} request
@@ -39,6 +42,18 @@ export declare class CodesClient {
39
42
  *
40
43
  * @example
41
44
  * await client.construe.codes.extract({
45
+ * text: "Patient has type 2 diabetes mellitus with diabetic chronic kidney disease.",
46
+ * system: {
47
+ * name: "ICD-10-CM",
48
+ * version: "umls-2026aa"
49
+ * },
50
+ * config: {
51
+ * validation_method: "simple"
52
+ * }
53
+ * })
54
+ *
55
+ * @example
56
+ * await client.construe.codes.extract({
42
57
  * text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
43
58
  * system: {
44
59
  * name: "SNOMED_CT_US_LITE",
@@ -94,6 +109,38 @@ export declare class CodesClient {
94
109
  */
95
110
  extract(request: phenoml.construe.ExtractRequest, requestOptions?: CodesClient.RequestOptions): core.HttpResponsePromise<phenoml.construe.ExtractCodesResult>;
96
111
  private __extract;
112
+ /**
113
+ * **Alpha:** phenocr is an alpha feature. The API contract — request
114
+ * parameters and response shape — may change as its internals evolve, and
115
+ * results may vary between releases. Do not depend on it for production
116
+ * workloads yet.
117
+ *
118
+ * Extracts medical codes from natural language clinical text using phenocr.
119
+ *
120
+ * Supported code systems: HPO, ICD-10-CM, and SNOMED_CT_US. The code
121
+ * system name and version are both required.
122
+ *
123
+ * @param {phenoml.construe.PhenoCrRequest} request
124
+ * @param {CodesClient.RequestOptions} requestOptions - Request-specific configuration.
125
+ *
126
+ * @throws {@link phenoml.construe.BadRequestError}
127
+ * @throws {@link phenoml.construe.UnauthorizedError}
128
+ * @throws {@link phenoml.construe.NotFoundError}
129
+ * @throws {@link phenoml.construe.InternalServerError}
130
+ * @throws {@link phenoml.construe.ServiceUnavailableError}
131
+ * @throws {@link phenoml.construe.GatewayTimeoutError}
132
+ *
133
+ * @example
134
+ * await client.construe.codes.phenocr({
135
+ * text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
136
+ * system: {
137
+ * name: "HPO",
138
+ * version: "umls-2026AA"
139
+ * }
140
+ * })
141
+ */
142
+ phenocr(request: phenoml.construe.PhenoCrRequest, requestOptions?: CodesClient.RequestOptions): core.HttpResponsePromise<phenoml.construe.ExtractCodesResult>;
143
+ private __phenocr;
97
144
  /**
98
145
  * Returns a paginated list of all codes in the specified code system from the terminology server.
99
146
  *
@@ -11,6 +11,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
11
11
  import { normalizeClientOptionsWithAuth } from "../../../../../../BaseClient.mjs";
12
12
  import { mergeHeaders } from "../../../../../../core/headers.mjs";
13
13
  import * as core from "../../../../../../core/index.mjs";
14
+ import { mergeAdditionalBodyParameters } from "../../../../../../core/requestBody.mjs";
14
15
  import * as environments from "../../../../../../environments.mjs";
15
16
  import { handleNonStatusCodeError } from "../../../../../../errors/handleNonStatusCodeError.mjs";
16
17
  import * as errors from "../../../../../../errors/index.mjs";
@@ -25,6 +26,9 @@ export class CodesClient {
25
26
  /**
26
27
  * Converts natural language text into structured medical codes.
27
28
  *
29
+ * Pass `system.version` to select a specific code system version, for example
30
+ * `umls-2026aa` for UMLS 2026AA-backed systems.
31
+ *
28
32
  * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
29
33
  *
30
34
  * @param {phenoml.construe.ExtractRequest} request
@@ -48,6 +52,18 @@ export class CodesClient {
48
52
  *
49
53
  * @example
50
54
  * await client.construe.codes.extract({
55
+ * text: "Patient has type 2 diabetes mellitus with diabetic chronic kidney disease.",
56
+ * system: {
57
+ * name: "ICD-10-CM",
58
+ * version: "umls-2026aa"
59
+ * },
60
+ * config: {
61
+ * validation_method: "simple"
62
+ * }
63
+ * })
64
+ *
65
+ * @example
66
+ * await client.construe.codes.extract({
51
67
  * text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
52
68
  * system: {
53
69
  * name: "SNOMED_CT_US_LITE",
@@ -116,7 +132,7 @@ export class CodesClient {
116
132
  contentType: "application/json",
117
133
  queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
118
134
  requestType: "json",
119
- body: request,
135
+ body: mergeAdditionalBodyParameters(request, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
120
136
  timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
121
137
  maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
122
138
  abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -151,6 +167,86 @@ export class CodesClient {
151
167
  return handleNonStatusCodeError(_response.error, _response.rawResponse, "POST", "/construe/extract");
152
168
  });
153
169
  }
170
+ /**
171
+ * **Alpha:** phenocr is an alpha feature. The API contract — request
172
+ * parameters and response shape — may change as its internals evolve, and
173
+ * results may vary between releases. Do not depend on it for production
174
+ * workloads yet.
175
+ *
176
+ * Extracts medical codes from natural language clinical text using phenocr.
177
+ *
178
+ * Supported code systems: HPO, ICD-10-CM, and SNOMED_CT_US. The code
179
+ * system name and version are both required.
180
+ *
181
+ * @param {phenoml.construe.PhenoCrRequest} request
182
+ * @param {CodesClient.RequestOptions} requestOptions - Request-specific configuration.
183
+ *
184
+ * @throws {@link phenoml.construe.BadRequestError}
185
+ * @throws {@link phenoml.construe.UnauthorizedError}
186
+ * @throws {@link phenoml.construe.NotFoundError}
187
+ * @throws {@link phenoml.construe.InternalServerError}
188
+ * @throws {@link phenoml.construe.ServiceUnavailableError}
189
+ * @throws {@link phenoml.construe.GatewayTimeoutError}
190
+ *
191
+ * @example
192
+ * await client.construe.codes.phenocr({
193
+ * text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
194
+ * system: {
195
+ * name: "HPO",
196
+ * version: "umls-2026AA"
197
+ * }
198
+ * })
199
+ */
200
+ phenocr(request, requestOptions) {
201
+ return core.HttpResponsePromise.fromPromise(this.__phenocr(request, requestOptions));
202
+ }
203
+ __phenocr(request, requestOptions) {
204
+ return __awaiter(this, void 0, void 0, function* () {
205
+ var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
206
+ const _authRequest = yield this._options.authProvider.getAuthRequest();
207
+ const _headers = mergeHeaders(_authRequest.headers, (_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
208
+ const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
209
+ url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "construe/phenocr"),
210
+ method: "POST",
211
+ headers: _headers,
212
+ contentType: "application/json",
213
+ queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
214
+ requestType: "json",
215
+ body: mergeAdditionalBodyParameters(request, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
216
+ timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
217
+ maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
218
+ abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
219
+ fetchFn: (_k = this._options) === null || _k === void 0 ? void 0 : _k.fetch,
220
+ logging: this._options.logging,
221
+ });
222
+ if (_response.ok) {
223
+ return { data: _response.body, rawResponse: _response.rawResponse };
224
+ }
225
+ if (_response.error.reason === "status-code") {
226
+ switch (_response.error.statusCode) {
227
+ case 400:
228
+ throw new phenoml.construe.BadRequestError(_response.error.body, _response.rawResponse);
229
+ case 401:
230
+ throw new phenoml.construe.UnauthorizedError(_response.error.body, _response.rawResponse);
231
+ case 404:
232
+ throw new phenoml.construe.NotFoundError(_response.error.body, _response.rawResponse);
233
+ case 500:
234
+ throw new phenoml.construe.InternalServerError(_response.error.body, _response.rawResponse);
235
+ case 503:
236
+ throw new phenoml.construe.ServiceUnavailableError(_response.error.body, _response.rawResponse);
237
+ case 504:
238
+ throw new phenoml.construe.GatewayTimeoutError(_response.error.body, _response.rawResponse);
239
+ default:
240
+ throw new errors.phenomlError({
241
+ statusCode: _response.error.statusCode,
242
+ body: _response.error.body,
243
+ rawResponse: _response.rawResponse,
244
+ });
245
+ }
246
+ }
247
+ return handleNonStatusCodeError(_response.error, _response.rawResponse, "POST", "/construe/phenocr");
248
+ });
249
+ }
154
250
  /**
155
251
  * Returns a paginated list of all codes in the specified code system from the terminology server.
156
252
  *
@@ -7,7 +7,7 @@
7
7
  * }
8
8
  */
9
9
  export interface CodesListRequest {
10
- /** Specific version of the code system. Required if multiple versions exist. */
10
+ /** Specific version of the code system, such as `umls-2026aa`. */
11
11
  version?: string;
12
12
  /** Pagination cursor from previous response */
13
13
  cursor?: string;
@@ -11,6 +11,18 @@ import type * as phenoml from "../../../../../../index.mjs";
11
11
  *
12
12
  * @example
13
13
  * {
14
+ * text: "Patient has type 2 diabetes mellitus with diabetic chronic kidney disease.",
15
+ * system: {
16
+ * name: "ICD-10-CM",
17
+ * version: "umls-2026aa"
18
+ * },
19
+ * config: {
20
+ * validation_method: "simple"
21
+ * }
22
+ * }
23
+ *
24
+ * @example
25
+ * {
14
26
  * text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
15
27
  * system: {
16
28
  * name: "SNOMED_CT_US_LITE",
@@ -5,6 +5,6 @@
5
5
  * }
6
6
  */
7
7
  export interface LookupRequest {
8
- /** Specific version of the code system */
8
+ /** Specific version of the code system, such as `umls-2026aa`. */
9
9
  version?: string;
10
10
  }
@@ -0,0 +1,16 @@
1
+ import type * as phenoml from "../../../../../../index.mjs";
2
+ /**
3
+ * @example
4
+ * {
5
+ * text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
6
+ * system: {
7
+ * name: "HPO",
8
+ * version: "umls-2026AA"
9
+ * }
10
+ * }
11
+ */
12
+ export interface PhenoCrRequest {
13
+ /** Natural language text to extract codes from */
14
+ text: string;
15
+ system: phenoml.construe.PhenocrExtractRequestSystem;
16
+ }
@@ -9,7 +9,7 @@
9
9
  export interface SearchSemanticRequest {
10
10
  /** Natural language text to find semantically similar codes for */
11
11
  text: string;
12
- /** Specific version of the code system */
12
+ /** Specific version of the code system, such as `umls-2026aa`. */
13
13
  version?: string;
14
14
  /** Maximum number of results (default 10, max 50) */
15
15
  limit?: number;
@@ -9,7 +9,7 @@
9
9
  export interface SearchTextRequest {
10
10
  /** Search query (searches code IDs and descriptions) */
11
11
  q: string;
12
- /** Specific version of the code system */
12
+ /** Specific version of the code system, such as `umls-2026aa`. */
13
13
  version?: string;
14
14
  /** Maximum number of results (default 20, max 100) */
15
15
  limit?: number;
@@ -1,5 +1,6 @@
1
1
  export type { CodesListRequest } from "./CodesListRequest.mjs";
2
2
  export type { ExtractRequest } from "./ExtractRequest.mjs";
3
3
  export type { LookupRequest } from "./LookupRequest.mjs";
4
+ export type { PhenoCrRequest } from "./PhenoCrRequest.mjs";
4
5
  export type { SearchSemanticRequest } from "./SearchSemanticRequest.mjs";
5
6
  export type { SearchTextRequest } from "./SearchTextRequest.mjs";
@@ -3,13 +3,16 @@ export interface ExtractRequestSystem {
3
3
  * Code system name. Can be a built-in system or a custom system name.
4
4
  *
5
5
  * Built-in systems:
6
- * * SNOMED_CT_US_LITE - version 20240901
7
- * * RXNORM - version 11042024
8
- * * ICD-10-CM - version 2025
9
- * * ICD-10-PCS - version 2025
10
- * * LOINC - version 2.78
11
- * * HPO - version 2025
12
- * * CPT - version 2025
6
+ * * CPT
7
+ * * HCPCS
8
+ * * HPO
9
+ * * ICD-10
10
+ * * ICD-10-CM
11
+ * * ICD-10-PCS
12
+ * * LOINC
13
+ * * RXNORM
14
+ * * SNOMED_CT_US
15
+ * * SNOMED_CT_US_LITE
13
16
  *
14
17
  * Custom systems:
15
18
  * * Any valid system name uploaded via /construe/upload. Requires a paid plan.
@@ -17,6 +20,6 @@ export interface ExtractRequestSystem {
17
20
  * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
18
21
  */
19
22
  name?: string | undefined;
20
- /** Code system version. Must match the version available in your environment. */
23
+ /** Specific code system version. */
21
24
  version?: string | undefined;
22
25
  }
@@ -0,0 +1,6 @@
1
+ export interface PhenocrExtractRequestSystem {
2
+ /** Code system name. Supported by phenocr: HPO, ICD-10-CM, SNOMED_CT_US. */
3
+ name: string;
4
+ /** Code system version to run against. */
5
+ version: string;
6
+ }
@@ -0,0 +1,2 @@
1
+ // This file was auto-generated by Fern from our API Definition.
2
+ export {};
@@ -14,6 +14,7 @@ export * from "./GetCodeResponse.mjs";
14
14
  export * from "./GetCodeSystemDetailResponse.mjs";
15
15
  export * from "./ListCodeSystemsResponse.mjs";
16
16
  export * from "./ListCodesResponse.mjs";
17
+ export * from "./PhenocrExtractRequestSystem.mjs";
17
18
  export * from "./SemanticSearchResponse.mjs";
18
19
  export * from "./SemanticSearchResult.mjs";
19
20
  export * from "./TextSearchResponse.mjs";
@@ -14,6 +14,7 @@ export * from "./GetCodeResponse.mjs";
14
14
  export * from "./GetCodeSystemDetailResponse.mjs";
15
15
  export * from "./ListCodeSystemsResponse.mjs";
16
16
  export * from "./ListCodesResponse.mjs";
17
+ export * from "./PhenocrExtractRequestSystem.mjs";
17
18
  export * from "./SemanticSearchResponse.mjs";
18
19
  export * from "./SemanticSearchResult.mjs";
19
20
  export * from "./TextSearchResponse.mjs";
@@ -11,6 +11,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
11
11
  import { normalizeClientOptionsWithAuth } from "../../../../BaseClient.mjs";
12
12
  import { mergeHeaders, mergeOnlyDefinedHeaders } from "../../../../core/headers.mjs";
13
13
  import * as core from "../../../../core/index.mjs";
14
+ import { mergeAdditionalBodyParameters } from "../../../../core/requestBody.mjs";
14
15
  import * as environments from "../../../../environments.mjs";
15
16
  import { handleNonStatusCodeError } from "../../../../errors/handleNonStatusCodeError.mjs";
16
17
  import * as errors from "../../../../errors/index.mjs";
@@ -132,7 +133,7 @@ export class FhirClient {
132
133
  contentType: "application/fhir+json",
133
134
  queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
134
135
  requestType: "json",
135
- body: _body,
136
+ body: mergeAdditionalBodyParameters(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
136
137
  timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
137
138
  maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
138
139
  abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -197,7 +198,7 @@ export class FhirClient {
197
198
  contentType: "application/fhir+json",
198
199
  queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
199
200
  requestType: "json",
200
- body: _body,
201
+ body: mergeAdditionalBodyParameters(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
201
202
  timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
202
203
  maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
203
204
  abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -381,7 +382,7 @@ export class FhirClient {
381
382
  contentType: "application/json-patch+json",
382
383
  queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
383
384
  requestType: "json",
384
- body: _body,
385
+ body: mergeAdditionalBodyParameters(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
385
386
  timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
386
387
  maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
387
388
  abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -475,7 +476,7 @@ export class FhirClient {
475
476
  contentType: "application/fhir+json",
476
477
  queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
477
478
  requestType: "json",
478
- body: _body,
479
+ body: mergeAdditionalBodyParameters(_body, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
479
480
  timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
480
481
  maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
481
482
  abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -11,6 +11,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
11
11
  import { normalizeClientOptionsWithAuth } from "../../../../BaseClient.mjs";
12
12
  import { mergeHeaders } from "../../../../core/headers.mjs";
13
13
  import * as core from "../../../../core/index.mjs";
14
+ import { mergeAdditionalBodyParameters } from "../../../../core/requestBody.mjs";
14
15
  import * as environments from "../../../../environments.mjs";
15
16
  import { handleNonStatusCodeError } from "../../../../errors/handleNonStatusCodeError.mjs";
16
17
  import * as errors from "../../../../errors/index.mjs";
@@ -165,7 +166,7 @@ export class Fhir2OmopClient {
165
166
  contentType: "application/json",
166
167
  queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
167
168
  requestType: "json",
168
- body: request,
169
+ body: mergeAdditionalBodyParameters(request, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.additionalBodyParameters),
169
170
  timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
170
171
  maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
171
172
  abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -12,6 +12,6 @@ export class BadRequestError extends errors.phenomlError {
12
12
  if (Error.captureStackTrace) {
13
13
  Error.captureStackTrace(this, this.constructor);
14
14
  }
15
- this.name = this.constructor.name;
15
+ this.name = "BadRequestError";
16
16
  }
17
17
  }
@@ -12,6 +12,6 @@ export class InternalServerError extends errors.phenomlError {
12
12
  if (Error.captureStackTrace) {
13
13
  Error.captureStackTrace(this, this.constructor);
14
14
  }
15
- this.name = this.constructor.name;
15
+ this.name = "InternalServerError";
16
16
  }
17
17
  }
@@ -12,6 +12,6 @@ export class ServiceUnavailableError extends errors.phenomlError {
12
12
  if (Error.captureStackTrace) {
13
13
  Error.captureStackTrace(this, this.constructor);
14
14
  }
15
- this.name = this.constructor.name;
15
+ this.name = "ServiceUnavailableError";
16
16
  }
17
17
  }
@@ -12,6 +12,6 @@ export class UnauthorizedError extends errors.phenomlError {
12
12
  if (Error.captureStackTrace) {
13
13
  Error.captureStackTrace(this, this.constructor);
14
14
  }
15
- this.name = this.constructor.name;
15
+ this.name = "UnauthorizedError";
16
16
  }
17
17
  }
@@ -0,0 +1,8 @@
1
+ export interface CareSiteRow {
2
+ care_site_id?: number | undefined;
3
+ care_site_name?: string | undefined;
4
+ place_of_service_concept_id?: number | undefined;
5
+ location_id?: number | undefined;
6
+ care_site_source_value?: string | undefined;
7
+ place_of_service_source_value?: string | undefined;
8
+ }
@@ -0,0 +1,2 @@
1
+ // This file was auto-generated by Fern from our API Definition.
2
+ export {};
@@ -7,6 +7,7 @@ export interface ConditionOccurrenceRow {
7
7
  condition_end_date?: string | undefined;
8
8
  condition_type_concept_id?: number | undefined;
9
9
  visit_occurrence_id?: number | undefined;
10
+ provider_id?: number | undefined;
10
11
  condition_source_value?: string | undefined;
11
12
  condition_source_concept_id?: number | undefined;
12
13
  condition_status_source_value?: string | undefined;
@@ -0,0 +1,9 @@
1
+ export interface DeathRow {
2
+ person_id?: number | undefined;
3
+ death_date?: string | undefined;
4
+ death_datetime?: string | undefined;
5
+ death_type_concept_id?: number | undefined;
6
+ cause_concept_id?: number | undefined;
7
+ cause_source_value?: string | undefined;
8
+ cause_source_concept_id?: number | undefined;
9
+ }
@@ -0,0 +1,2 @@
1
+ // This file was auto-generated by Fern from our API Definition.
2
+ export {};
@@ -9,6 +9,7 @@ export interface DrugExposureRow {
9
9
  stop_reason?: string | undefined;
10
10
  sig?: string | undefined;
11
11
  visit_occurrence_id?: number | undefined;
12
+ provider_id?: number | undefined;
12
13
  drug_source_value?: string | undefined;
13
14
  drug_source_concept_id?: number | undefined;
14
15
  }
@@ -0,0 +1,14 @@
1
+ export interface LocationRow {
2
+ location_id?: number | undefined;
3
+ address_1?: string | undefined;
4
+ address_2?: string | undefined;
5
+ city?: string | undefined;
6
+ state?: string | undefined;
7
+ zip?: string | undefined;
8
+ county?: string | undefined;
9
+ location_source_value?: string | undefined;
10
+ country_concept_id?: number | undefined;
11
+ country_source_value?: string | undefined;
12
+ latitude?: number | undefined;
13
+ longitude?: number | undefined;
14
+ }
@@ -0,0 +1,2 @@
1
+ // This file was auto-generated by Fern from our API Definition.
2
+ export {};
@@ -13,6 +13,7 @@ export interface MeasurementRow {
13
13
  range_low?: number | undefined;
14
14
  range_high?: number | undefined;
15
15
  visit_occurrence_id?: number | undefined;
16
+ provider_id?: number | undefined;
16
17
  measurement_source_value?: string | undefined;
17
18
  measurement_source_concept_id?: number | undefined;
18
19
  unit_source_value?: string | undefined;
@@ -0,0 +1,7 @@
1
+ export interface ObservationPeriodRow {
2
+ observation_period_id?: number | undefined;
3
+ person_id?: number | undefined;
4
+ observation_period_start_date?: string | undefined;
5
+ observation_period_end_date?: string | undefined;
6
+ period_type_concept_id?: number | undefined;
7
+ }
@@ -0,0 +1,2 @@
1
+ // This file was auto-generated by Fern from our API Definition.
2
+ export {};
@@ -10,6 +10,7 @@ export interface ObservationRow {
10
10
  value_as_concept_id?: number | undefined;
11
11
  unit_concept_id?: number | undefined;
12
12
  visit_occurrence_id?: number | undefined;
13
+ provider_id?: number | undefined;
13
14
  observation_source_value?: string | undefined;
14
15
  observation_source_concept_id?: number | undefined;
15
16
  unit_source_value?: string | undefined;
@@ -3,7 +3,12 @@ import type * as phenoml from "../../../index.mjs";
3
3
  * OMOP CDM v5.4 rows grouped by destination table.
4
4
  */
5
5
  export interface OmopTables {
6
+ location?: phenoml.fhir2Omop.LocationRow[] | undefined;
7
+ care_site?: phenoml.fhir2Omop.CareSiteRow[] | undefined;
8
+ provider?: phenoml.fhir2Omop.ProviderRow[] | undefined;
6
9
  person?: phenoml.fhir2Omop.PersonRow[] | undefined;
10
+ death?: phenoml.fhir2Omop.DeathRow[] | undefined;
11
+ observation_period?: phenoml.fhir2Omop.ObservationPeriodRow[] | undefined;
7
12
  visit_occurrence?: phenoml.fhir2Omop.VisitOccurrenceRow[] | undefined;
8
13
  condition_occurrence?: phenoml.fhir2Omop.ConditionOccurrenceRow[] | undefined;
9
14
  drug_exposure?: phenoml.fhir2Omop.DrugExposureRow[] | undefined;
@@ -7,6 +7,7 @@ export interface PersonRow {
7
7
  birth_datetime?: string | undefined;
8
8
  race_concept_id?: number | undefined;
9
9
  ethnicity_concept_id?: number | undefined;
10
+ location_id?: number | undefined;
10
11
  person_source_value?: string | undefined;
11
12
  gender_source_value?: string | undefined;
12
13
  race_source_value?: string | undefined;
@@ -6,6 +6,7 @@ export interface ProcedureOccurrenceRow {
6
6
  procedure_datetime?: string | undefined;
7
7
  procedure_type_concept_id?: number | undefined;
8
8
  visit_occurrence_id?: number | undefined;
9
+ provider_id?: number | undefined;
9
10
  procedure_source_value?: string | undefined;
10
11
  procedure_source_concept_id?: number | undefined;
11
12
  }
@@ -0,0 +1,15 @@
1
+ export interface ProviderRow {
2
+ provider_id?: number | undefined;
3
+ provider_name?: string | undefined;
4
+ npi?: string | undefined;
5
+ dea?: string | undefined;
6
+ specialty_concept_id?: number | undefined;
7
+ care_site_id?: number | undefined;
8
+ year_of_birth?: number | undefined;
9
+ gender_concept_id?: number | undefined;
10
+ provider_source_value?: string | undefined;
11
+ specialty_source_value?: string | undefined;
12
+ specialty_source_concept_id?: number | undefined;
13
+ gender_source_value?: string | undefined;
14
+ gender_source_concept_id?: number | undefined;
15
+ }
@@ -0,0 +1,2 @@
1
+ // This file was auto-generated by Fern from our API Definition.
2
+ export {};
@@ -7,5 +7,7 @@ export interface VisitOccurrenceRow {
7
7
  visit_end_date?: string | undefined;
8
8
  visit_end_datetime?: string | undefined;
9
9
  visit_type_concept_id?: number | undefined;
10
+ provider_id?: number | undefined;
11
+ care_site_id?: number | undefined;
10
12
  visit_source_value?: string | undefined;
11
13
  }
@@ -1,12 +1,17 @@
1
+ export * from "./CareSiteRow.mjs";
1
2
  export * from "./ConditionOccurrenceRow.mjs";
2
3
  export * from "./CreateOmopResponse.mjs";
4
+ export * from "./DeathRow.mjs";
3
5
  export * from "./DroppedResource.mjs";
4
6
  export * from "./DrugExposureRow.mjs";
7
+ export * from "./LocationRow.mjs";
5
8
  export * from "./MappingEntry.mjs";
6
9
  export * from "./MeasurementRow.mjs";
10
+ export * from "./ObservationPeriodRow.mjs";
7
11
  export * from "./ObservationRow.mjs";
8
12
  export * from "./OmopTables.mjs";
9
13
  export * from "./PersonRow.mjs";
10
14
  export * from "./ProcedureOccurrenceRow.mjs";
15
+ export * from "./ProviderRow.mjs";
11
16
  export * from "./Summary.mjs";
12
17
  export * from "./VisitOccurrenceRow.mjs";