phenoml 0.0.2

package/dist/cjs/api/resources/cohort/client/Client.js

@@ -0,0 +1,134 @@
+"use strict";
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Cohort = void 0;
+const environments = __importStar(require("../../../../environments.js"));
+const core = __importStar(require("../../../../core/index.js"));
+const phenoml = __importStar(require("../../../index.js"));
+const headers_js_1 = require("../../../../core/headers.js");
+const errors = __importStar(require("../../../../errors/index.js"));
+class Cohort {
+    constructor(_options) {
+        this._options = _options;
+    }
+    /**
+     * Converts natural language text into structured FHIR search queries for patient cohort analysis
+     *
+     * @param {phenoml.cohort.CohortRequest} request
+     * @param {Cohort.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.cohort.BadRequestError}
+     * @throws {@link phenoml.cohort.UnauthorizedError}
+     * @throws {@link phenoml.cohort.InternalServerError}
+     *
+     * @example
+     *     await client.cohort.analyze({
+     *         text: "female patients over 65 with diabetes but not hypertension"
+     *     })
+     */
+    analyze(request, requestOptions) {
+        return core.HttpResponsePromise.fromPromise(this.__analyze(request, requestOptions));
+    }
+    __analyze(request, requestOptions) {
+        return __awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d;
+            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "cohort"),
+                method: "POST",
+                headers: _headers,
+                contentType: "application/json",
+                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                requestType: "json",
+                body: request,
+                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
+                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+            });
+            if (_response.ok) {
+                return { data: _response.body, rawResponse: _response.rawResponse };
+            }
+            if (_response.error.reason === "status-code") {
+                switch (_response.error.statusCode) {
+                    case 400:
+                        throw new phenoml.cohort.BadRequestError(_response.error.body, _response.rawResponse);
+                    case 401:
+                        throw new phenoml.cohort.UnauthorizedError(_response.error.body, _response.rawResponse);
+                    case 500:
+                        throw new phenoml.cohort.InternalServerError(_response.error.body, _response.rawResponse);
+                    default:
+                        throw new errors.phenomlError({
+                            statusCode: _response.error.statusCode,
+                            body: _response.error.body,
+                            rawResponse: _response.rawResponse,
+                        });
+                }
+            }
+            switch (_response.error.reason) {
+                case "non-json":
+                    throw new errors.phenomlError({
+                        statusCode: _response.error.statusCode,
+                        body: _response.error.rawBody,
+                        rawResponse: _response.rawResponse,
+                    });
+                case "timeout":
+                    throw new errors.phenomlTimeoutError("Timeout exceeded when calling POST /cohort.");
+                case "unknown":
+                    throw new errors.phenomlError({
+                        message: _response.error.errorMessage,
+                        rawResponse: _response.rawResponse,
+                    });
+            }
+        });
+    }
+    _getAuthorizationHeader() {
+        return __awaiter(this, void 0, void 0, function* () {
+            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
+        });
+    }
+}
+exports.Cohort = Cohort;

package/dist/cjs/api/resources/cohort/client/index.d.ts

@@ -0,0 +1,2 @@
+export {};
+export * from "./requests/index.js";

package/dist/cjs/api/resources/cohort/client/index.js

@@ -0,0 +1,17 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./requests/index.js"), exports);

package/dist/cjs/api/resources/cohort/client/requests/CohortRequest.d.ts

@@ -0,0 +1,13 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+/**
+ * @example
+ *     {
+ *         text: "female patients over 65 with diabetes but not hypertension"
+ *     }
+ */
+export interface CohortRequest {
+    /** Natural language text describing patient cohort criteria */
+    text: string;
+}

package/dist/cjs/api/resources/cohort/client/requests/CohortRequest.js

@@ -0,0 +1,5 @@
+"use strict";
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/cohort/client/requests/index.d.ts

@@ -0,0 +1 @@
+export { type CohortRequest } from "./CohortRequest.js";

package/dist/cjs/api/resources/cohort/client/requests/index.js

@@ -0,0 +1,2 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/cohort/errors/BadRequestError.d.ts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.js";
+import * as core from "../../../../core/index.js";
+export declare class BadRequestError extends errors.phenomlError {
+    constructor(body?: unknown, rawResponse?: core.RawResponse);
+}

package/dist/cjs/api/resources/cohort/errors/BadRequestError.js

@@ -0,0 +1,52 @@
+"use strict";
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.BadRequestError = void 0;
+const errors = __importStar(require("../../../../errors/index.js"));
+class BadRequestError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "BadRequestError",
+            statusCode: 400,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, BadRequestError.prototype);
+    }
+}
+exports.BadRequestError = BadRequestError;

package/dist/cjs/api/resources/cohort/errors/InternalServerError.d.ts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.js";
+import * as core from "../../../../core/index.js";
+export declare class InternalServerError extends errors.phenomlError {
+    constructor(body?: unknown, rawResponse?: core.RawResponse);
+}

package/dist/cjs/api/resources/cohort/errors/InternalServerError.js

@@ -0,0 +1,52 @@
+"use strict";
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.InternalServerError = void 0;
+const errors = __importStar(require("../../../../errors/index.js"));
+class InternalServerError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "InternalServerError",
+            statusCode: 500,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, InternalServerError.prototype);
+    }
+}
+exports.InternalServerError = InternalServerError;

package/dist/cjs/api/resources/cohort/errors/UnauthorizedError.d.ts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.js";
+import * as core from "../../../../core/index.js";
+export declare class UnauthorizedError extends errors.phenomlError {
+    constructor(body?: unknown, rawResponse?: core.RawResponse);
+}

package/dist/cjs/api/resources/cohort/errors/UnauthorizedError.js

@@ -0,0 +1,52 @@
+"use strict";
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UnauthorizedError = void 0;
+const errors = __importStar(require("../../../../errors/index.js"));
+class UnauthorizedError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "UnauthorizedError",
+            statusCode: 401,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, UnauthorizedError.prototype);
+    }
+}
+exports.UnauthorizedError = UnauthorizedError;

package/dist/cjs/api/resources/cohort/errors/index.d.ts

@@ -0,0 +1,3 @@
+export * from "./BadRequestError.js";
+export * from "./UnauthorizedError.js";
+export * from "./InternalServerError.js";

package/dist/cjs/api/resources/cohort/errors/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./BadRequestError.js"), exports);
+__exportStar(require("./UnauthorizedError.js"), exports);
+__exportStar(require("./InternalServerError.js"), exports);

package/dist/cjs/api/resources/cohort/index.d.ts

@@ -0,0 +1,3 @@
+export * from "./types/index.js";
+export * from "./errors/index.js";
+export * from "./client/index.js";

package/dist/cjs/api/resources/cohort/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./types/index.js"), exports);
+__exportStar(require("./errors/index.js"), exports);
+__exportStar(require("./client/index.js"), exports);

package/dist/cjs/api/resources/cohort/types/CohortResponse.d.ts

@@ -0,0 +1,12 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as phenoml from "../../../index.js";
+export interface CohortResponse {
+    /** Whether the cohort analysis was successful */
+    success?: boolean;
+    /** Human-readable message about the analysis result */
+    message?: string;
+    /** Array of search concepts converted to FHIR search queries */
+    queries?: phenoml.cohort.SearchConcept[];
+}

package/dist/cjs/api/resources/cohort/types/CohortResponse.js

@@ -0,0 +1,5 @@
+"use strict";
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/cohort/types/SearchConcept.d.ts

@@ -0,0 +1,13 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export interface SearchConcept {
+    /** The FHIR resource type for this search concept */
+    resource_type?: string;
+    /** FHIR search parameters in standard format */
+    search_params?: string;
+    /** The original concept description */
+    concept?: string;
+    /** Whether this concept should be excluded from the search */
+    exclude?: boolean;
+}

package/dist/cjs/api/resources/cohort/types/SearchConcept.js

@@ -0,0 +1,5 @@
+"use strict";
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/cohort/types/index.d.ts

@@ -0,0 +1,2 @@
+export * from "./CohortResponse.js";
+export * from "./SearchConcept.js";

package/dist/cjs/api/resources/cohort/types/index.js

@@ -0,0 +1,18 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./CohortResponse.js"), exports);
+__exportStar(require("./SearchConcept.js"), exports);

package/dist/cjs/api/resources/construe/client/Client.d.ts

@@ -0,0 +1,94 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as environments from "../../../../environments.js";
+import * as core from "../../../../core/index.js";
+import * as phenoml from "../../../index.js";
+export declare namespace Construe {
+    interface Options {
+        environment?: core.Supplier<environments.phenomlEnvironment | string>;
+        /** Specify a custom URL to connect the client to. */
+        baseUrl?: core.Supplier<string>;
+        token: core.Supplier<core.BearerToken>;
+        /** Additional headers to include in requests. */
+        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+        fetcher?: core.FetchFunction;
+    }
+    interface RequestOptions {
+        /** The maximum time to wait for a response in seconds. */
+        timeoutInSeconds?: number;
+        /** The number of times to retry the request. Defaults to 2. */
+        maxRetries?: number;
+        /** A hook to abort the request. */
+        abortSignal?: AbortSignal;
+        /** Additional query string parameters to include in the request. */
+        queryParams?: Record<string, unknown>;
+        /** Additional headers to include in the request. */
+        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+    }
+}
+export declare class Construe {
+    protected readonly _options: Construe.Options;
+    constructor(_options: Construe.Options);
+    /**
+     * Upload a custom medical code system with codes and descriptions for use in code extraction.
+     * Upon upload, construe generates embeddings for all of the codes in the code system and stores them in the vector database so you can
+     * subsequently use the code system for construe/extract and lang2fhir/create (coming soon!)
+     *
+     * @param {phenoml.construe.UploadRequest} request
+     * @param {Construe.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.construe.BadRequestError}
+     * @throws {@link phenoml.construe.UnauthorizedError}
+     * @throws {@link phenoml.construe.ConflictError}
+     * @throws {@link phenoml.construe.FailedDependencyError}
+     * @throws {@link phenoml.construe.InternalServerError}
+     *
+     * @example
+     *     await client.construe.uploadCodeSystem({
+     *         name: "CUSTOM_CODES",
+     *         version: "1.0",
+     *         format: "json",
+     *         file: "file"
+     *     })
+     */
+    uploadCodeSystem(request: phenoml.construe.UploadRequest, requestOptions?: Construe.RequestOptions): core.HttpResponsePromise<phenoml.construe.ConstrueUploadCodeSystemResponse>;
+    private __uploadCodeSystem;
+    /**
+     * Converts natural language text into structured medical codes
+     *
+     * @param {phenoml.construe.ExtractRequest} request
+     * @param {Construe.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.construe.BadRequestError}
+     * @throws {@link phenoml.construe.UnauthorizedError}
+     * @throws {@link phenoml.construe.FailedDependencyError}
+     * @throws {@link phenoml.construe.InternalServerError}
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "Patient is a 14-year-old female, previously healthy, who is here for evaluation of abnormal renal ultrasound with atrophic right kidney"
+     *     })
+     */
+    extractCodes(request: phenoml.construe.ExtractRequest, requestOptions?: Construe.RequestOptions): core.HttpResponsePromise<phenoml.construe.ExtractCodesResult>;
+    private __extractCodes;
+    /**
+     * Creates a patient cohort based on a natural language description.
+     * Translates the description into FHIR search queries and optional SQL queries.
+     *
+     * @param {phenoml.construe.ConstrueCohortRequest} request
+     * @param {Construe.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.construe.BadRequestError}
+     * @throws {@link phenoml.construe.UnauthorizedError}
+     * @throws {@link phenoml.construe.InternalServerError}
+     *
+     * @example
+     *     await client.construe.cohort({
+     *         text: "Between 20 and 40 years old with hyperlipidemia"
+     *     })
+     */
+    cohort(request: phenoml.construe.ConstrueCohortRequest, requestOptions?: Construe.RequestOptions): core.HttpResponsePromise<phenoml.construe.ConstrueCohortResponse>;
+    private __cohort;
+    protected _getAuthorizationHeader(): Promise<string>;
+}