phenoml 0.0.2

package/dist/esm/api/resources/authtoken/resources/auth/client/Client.mjs

@@ -0,0 +1,108 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+import * as environments from "../../../../../../environments.mjs";
+import * as core from "../../../../../../core/index.mjs";
+import * as phenoml from "../../../../../index.mjs";
+import { mergeHeaders, mergeOnlyDefinedHeaders } from "../../../../../../core/headers.mjs";
+import * as errors from "../../../../../../errors/index.mjs";
+export class Auth {
+    constructor(_options) {
+        this._options = _options;
+    }
+    /**
+     * Obtain an access token using client credentials
+     *
+     * @param {phenoml.authtoken.AuthGenerateTokenRequest} request
+     * @param {Auth.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.authtoken.BadRequestError}
+     * @throws {@link phenoml.authtoken.UnauthorizedError}
+     *
+     * @example
+     *     await client.authtoken.auth.generateToken({
+     *         username: "username",
+     *         password: "password"
+     *     })
+     */
+    generateToken(request, requestOptions) {
+        return core.HttpResponsePromise.fromPromise(this.__generateToken(request, requestOptions));
+    }
+    __generateToken(request, requestOptions) {
+        return __awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d;
+            let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader(request) }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "auth/token"),
+                method: "POST",
+                headers: _headers,
+                contentType: "application/json",
+                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                requestType: "json",
+                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
+                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+            });
+            if (_response.ok) {
+                return {
+                    data: _response.body,
+                    rawResponse: _response.rawResponse,
+                };
+            }
+            if (_response.error.reason === "status-code") {
+                switch (_response.error.statusCode) {
+                    case 400:
+                        throw new phenoml.authtoken.BadRequestError(_response.error.body, _response.rawResponse);
+                    case 401:
+                        throw new phenoml.authtoken.UnauthorizedError(_response.error.body, _response.rawResponse);
+                    default:
+                        throw new errors.phenomlError({
+                            statusCode: _response.error.statusCode,
+                            body: _response.error.body,
+                            rawResponse: _response.rawResponse,
+                        });
+                }
+            }
+            switch (_response.error.reason) {
+                case "non-json":
+                    throw new errors.phenomlError({
+                        statusCode: _response.error.statusCode,
+                        body: _response.error.rawBody,
+                        rawResponse: _response.rawResponse,
+                    });
+                case "timeout":
+                    throw new errors.phenomlTimeoutError("Timeout exceeded when calling POST /auth/token.");
+                case "unknown":
+                    throw new errors.phenomlError({
+                        message: _response.error.errorMessage,
+                        rawResponse: _response.rawResponse,
+                    });
+            }
+        });
+    }
+    _getAuthorizationHeader(request) {
+        return __awaiter(this, void 0, void 0, function* () {
+            // Auth token endpoint only uses basic auth with username/password
+            if (!(request === null || request === void 0 ? void 0 : request.username) || !(request === null || request === void 0 ? void 0 : request.password)) {
+                throw new Error("Must provide both 'username' and 'password'");
+            }
+            const basicAuthHeader = core.BasicAuth.toAuthorizationHeader({
+                username: request.username,
+                password: request.password
+            });
+            if (!basicAuthHeader) {
+                throw new Error("Failed to create basic auth header from username/password");
+            }
+            return basicAuthHeader;
+        });
+    }
+}

package/dist/esm/api/resources/authtoken/resources/auth/client/index.d.mts

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+export {};
+export * from "./requests/index.mjs";

package/dist/esm/api/resources/authtoken/resources/auth/client/index.mjs

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+export * from "./requests/index.mjs";

package/dist/esm/api/resources/authtoken/resources/auth/client/requests/AuthGenerateTokenRequest.d.mts

@@ -0,0 +1,16 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+/**
+ * @example
+ *     {
+ *         username: "username",
+ *         password: "password"
+ *     }
+ */
+export interface AuthGenerateTokenRequest {
+    /** The user's username or email */
+    username: string;
+    /** The user's password */
+    password: string;
+}

package/dist/esm/api/resources/authtoken/resources/auth/client/requests/AuthGenerateTokenRequest.mjs

@@ -0,0 +1,4 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export {};

package/dist/esm/api/resources/authtoken/resources/auth/client/requests/index.d.mts

@@ -0,0 +1 @@
+export { type AuthGenerateTokenRequest } from "./AuthGenerateTokenRequest.mjs";

package/dist/esm/api/resources/authtoken/resources/auth/client/requests/index.mjs

@@ -0,0 +1 @@
+export {};

package/dist/esm/api/resources/authtoken/resources/auth/index.d.mts

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+export * from "./types/index.mjs";
+export * from "./client/index.mjs";

package/dist/esm/api/resources/authtoken/resources/auth/index.mjs

@@ -0,0 +1,2 @@
+export * from "./types/index.mjs";
+export * from "./client/index.mjs";

package/dist/esm/api/resources/authtoken/resources/auth/types/AuthGenerateTokenResponse.d.mts

@@ -0,0 +1,7 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export interface AuthGenerateTokenResponse {
+    /** JWT token to be used for subsequent authenticated requests */
+    token: string;
+}

package/dist/esm/api/resources/authtoken/resources/auth/types/AuthGenerateTokenResponse.mjs

@@ -0,0 +1,4 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export {};

package/dist/esm/api/resources/authtoken/resources/auth/types/index.d.mts

@@ -0,0 +1 @@
+export * from "./AuthGenerateTokenResponse.mjs";

package/dist/esm/api/resources/authtoken/resources/auth/types/index.mjs

@@ -0,0 +1 @@
+export * from "./AuthGenerateTokenResponse.mjs";

package/dist/esm/api/resources/authtoken/resources/index.d.mts

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+export * as auth from "./auth/index.mjs";
+export * from "./auth/types/index.mjs";
+export * from "./auth/client/requests/index.mjs";

package/dist/esm/api/resources/authtoken/resources/index.mjs

@@ -0,0 +1,3 @@
+export * as auth from "./auth/index.mjs";
+export * from "./auth/types/index.mjs";
+export * from "./auth/client/requests/index.mjs";

package/dist/esm/api/resources/authtoken/types/BadRequestErrorBody.d.mts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export interface BadRequestErrorBody {
+    code?: number;
+    message?: string;
+    data?: Record<string, unknown>;
+}

package/dist/esm/api/resources/authtoken/types/BadRequestErrorBody.mjs

@@ -0,0 +1,4 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export {};

package/dist/esm/api/resources/authtoken/types/UnauthorizedErrorBody.d.mts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export interface UnauthorizedErrorBody {
+    code?: number;
+    message?: string;
+    data?: Record<string, unknown>;
+}

package/dist/esm/api/resources/authtoken/types/UnauthorizedErrorBody.mjs

@@ -0,0 +1,4 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export {};

package/dist/esm/api/resources/authtoken/types/index.d.mts

@@ -0,0 +1,2 @@
+export * from "./BadRequestErrorBody.mjs";
+export * from "./UnauthorizedErrorBody.mjs";

package/dist/esm/api/resources/authtoken/types/index.mjs

@@ -0,0 +1,2 @@
+export * from "./BadRequestErrorBody.mjs";
+export * from "./UnauthorizedErrorBody.mjs";

package/dist/esm/api/resources/cohort/client/Client.d.mts

@@ -0,0 +1,51 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as environments from "../../../../environments.mjs";
+import * as core from "../../../../core/index.mjs";
+import * as phenoml from "../../../index.mjs";
+export declare namespace Cohort {
+    interface Options {
+        environment?: core.Supplier<environments.phenomlEnvironment | string>;
+        /** Specify a custom URL to connect the client to. */
+        baseUrl?: core.Supplier<string>;
+        token: core.Supplier<core.BearerToken>;
+        /** Additional headers to include in requests. */
+        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+        fetcher?: core.FetchFunction;
+    }
+    interface RequestOptions {
+        /** The maximum time to wait for a response in seconds. */
+        timeoutInSeconds?: number;
+        /** The number of times to retry the request. Defaults to 2. */
+        maxRetries?: number;
+        /** A hook to abort the request. */
+        abortSignal?: AbortSignal;
+        /** Additional query string parameters to include in the request. */
+        queryParams?: Record<string, unknown>;
+        /** Additional headers to include in the request. */
+        headers?: Record<string, string | core.Supplier<string | undefined> | undefined>;
+    }
+}
+export declare class Cohort {
+    protected readonly _options: Cohort.Options;
+    constructor(_options: Cohort.Options);
+    /**
+     * Converts natural language text into structured FHIR search queries for patient cohort analysis
+     *
+     * @param {phenoml.cohort.CohortRequest} request
+     * @param {Cohort.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.cohort.BadRequestError}
+     * @throws {@link phenoml.cohort.UnauthorizedError}
+     * @throws {@link phenoml.cohort.InternalServerError}
+     *
+     * @example
+     *     await client.cohort.analyze({
+     *         text: "female patients over 65 with diabetes but not hypertension"
+     *     })
+     */
+    analyze(request: phenoml.cohort.CohortRequest, requestOptions?: Cohort.RequestOptions): core.HttpResponsePromise<phenoml.cohort.CohortResponse>;
+    private __analyze;
+    protected _getAuthorizationHeader(): Promise<string>;
+}

package/dist/esm/api/resources/cohort/client/Client.mjs

@@ -0,0 +1,97 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+import * as environments from "../../../../environments.mjs";
+import * as core from "../../../../core/index.mjs";
+import * as phenoml from "../../../index.mjs";
+import { mergeHeaders, mergeOnlyDefinedHeaders } from "../../../../core/headers.mjs";
+import * as errors from "../../../../errors/index.mjs";
+export class Cohort {
+    constructor(_options) {
+        this._options = _options;
+    }
+    /**
+     * Converts natural language text into structured FHIR search queries for patient cohort analysis
+     *
+     * @param {phenoml.cohort.CohortRequest} request
+     * @param {Cohort.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.cohort.BadRequestError}
+     * @throws {@link phenoml.cohort.UnauthorizedError}
+     * @throws {@link phenoml.cohort.InternalServerError}
+     *
+     * @example
+     *     await client.cohort.analyze({
+     *         text: "female patients over 65 with diabetes but not hypertension"
+     *     })
+     */
+    analyze(request, requestOptions) {
+        return core.HttpResponsePromise.fromPromise(this.__analyze(request, requestOptions));
+    }
+    __analyze(request, requestOptions) {
+        return __awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d;
+            let _headers = mergeHeaders((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, mergeOnlyDefinedHeaders({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "cohort"),
+                method: "POST",
+                headers: _headers,
+                contentType: "application/json",
+                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                requestType: "json",
+                body: request,
+                timeoutMs: (requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) != null ? requestOptions.timeoutInSeconds * 1000 : 60000,
+                maxRetries: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries,
+                abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
+            });
+            if (_response.ok) {
+                return { data: _response.body, rawResponse: _response.rawResponse };
+            }
+            if (_response.error.reason === "status-code") {
+                switch (_response.error.statusCode) {
+                    case 400:
+                        throw new phenoml.cohort.BadRequestError(_response.error.body, _response.rawResponse);
+                    case 401:
+                        throw new phenoml.cohort.UnauthorizedError(_response.error.body, _response.rawResponse);
+                    case 500:
+                        throw new phenoml.cohort.InternalServerError(_response.error.body, _response.rawResponse);
+                    default:
+                        throw new errors.phenomlError({
+                            statusCode: _response.error.statusCode,
+                            body: _response.error.body,
+                            rawResponse: _response.rawResponse,
+                        });
+                }
+            }
+            switch (_response.error.reason) {
+                case "non-json":
+                    throw new errors.phenomlError({
+                        statusCode: _response.error.statusCode,
+                        body: _response.error.rawBody,
+                        rawResponse: _response.rawResponse,
+                    });
+                case "timeout":
+                    throw new errors.phenomlTimeoutError("Timeout exceeded when calling POST /cohort.");
+                case "unknown":
+                    throw new errors.phenomlError({
+                        message: _response.error.errorMessage,
+                        rawResponse: _response.rawResponse,
+                    });
+            }
+        });
+    }
+    _getAuthorizationHeader() {
+        return __awaiter(this, void 0, void 0, function* () {
+            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
+        });
+    }
+}

package/dist/esm/api/resources/cohort/client/index.d.mts

@@ -0,0 +1,2 @@
+export {};
+export * from "./requests/index.mjs";

package/dist/esm/api/resources/cohort/client/index.mjs

@@ -0,0 +1 @@
+export * from "./requests/index.mjs";

package/dist/esm/api/resources/cohort/client/requests/CohortRequest.d.mts

@@ -0,0 +1,13 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+/**
+ * @example
+ *     {
+ *         text: "female patients over 65 with diabetes but not hypertension"
+ *     }
+ */
+export interface CohortRequest {
+    /** Natural language text describing patient cohort criteria */
+    text: string;
+}

package/dist/esm/api/resources/cohort/client/requests/CohortRequest.mjs

@@ -0,0 +1,4 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export {};

package/dist/esm/api/resources/cohort/client/requests/index.d.mts

@@ -0,0 +1 @@
+export { type CohortRequest } from "./CohortRequest.mjs";

package/dist/esm/api/resources/cohort/client/requests/index.mjs

@@ -0,0 +1 @@
+export {};

package/dist/esm/api/resources/cohort/errors/BadRequestError.d.mts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
+export declare class BadRequestError extends errors.phenomlError {
+    constructor(body?: unknown, rawResponse?: core.RawResponse);
+}

package/dist/esm/api/resources/cohort/errors/BadRequestError.mjs

@@ -0,0 +1,15 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.mjs";
+export class BadRequestError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "BadRequestError",
+            statusCode: 400,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, BadRequestError.prototype);
+    }
+}

package/dist/esm/api/resources/cohort/errors/InternalServerError.d.mts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
+export declare class InternalServerError extends errors.phenomlError {
+    constructor(body?: unknown, rawResponse?: core.RawResponse);
+}

package/dist/esm/api/resources/cohort/errors/InternalServerError.mjs

@@ -0,0 +1,15 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.mjs";
+export class InternalServerError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "InternalServerError",
+            statusCode: 500,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, InternalServerError.prototype);
+    }
+}

package/dist/esm/api/resources/cohort/errors/UnauthorizedError.d.mts

@@ -0,0 +1,8 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.mjs";
+import * as core from "../../../../core/index.mjs";
+export declare class UnauthorizedError extends errors.phenomlError {
+    constructor(body?: unknown, rawResponse?: core.RawResponse);
+}

package/dist/esm/api/resources/cohort/errors/UnauthorizedError.mjs

@@ -0,0 +1,15 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as errors from "../../../../errors/index.mjs";
+export class UnauthorizedError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "UnauthorizedError",
+            statusCode: 401,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, UnauthorizedError.prototype);
+    }
+}

package/dist/esm/api/resources/cohort/errors/index.d.mts

@@ -0,0 +1,3 @@
+export * from "./BadRequestError.mjs";
+export * from "./UnauthorizedError.mjs";
+export * from "./InternalServerError.mjs";

package/dist/esm/api/resources/cohort/errors/index.mjs

@@ -0,0 +1,3 @@
+export * from "./BadRequestError.mjs";
+export * from "./UnauthorizedError.mjs";
+export * from "./InternalServerError.mjs";

package/dist/esm/api/resources/cohort/index.d.mts

@@ -0,0 +1,3 @@
+export * from "./types/index.mjs";
+export * from "./errors/index.mjs";
+export * from "./client/index.mjs";

package/dist/esm/api/resources/cohort/index.mjs

@@ -0,0 +1,3 @@
+export * from "./types/index.mjs";
+export * from "./errors/index.mjs";
+export * from "./client/index.mjs";

package/dist/esm/api/resources/cohort/types/CohortResponse.d.mts

@@ -0,0 +1,12 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+import * as phenoml from "../../../index.mjs";
+export interface CohortResponse {
+    /** Whether the cohort analysis was successful */
+    success?: boolean;
+    /** Human-readable message about the analysis result */
+    message?: string;
+    /** Array of search concepts converted to FHIR search queries */
+    queries?: phenoml.cohort.SearchConcept[];
+}

package/dist/esm/api/resources/cohort/types/CohortResponse.mjs

@@ -0,0 +1,4 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export {};

package/dist/esm/api/resources/cohort/types/SearchConcept.d.mts

@@ -0,0 +1,13 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export interface SearchConcept {
+    /** The FHIR resource type for this search concept */
+    resource_type?: string;
+    /** FHIR search parameters in standard format */
+    search_params?: string;
+    /** The original concept description */
+    concept?: string;
+    /** Whether this concept should be excluded from the search */
+    exclude?: boolean;
+}

package/dist/esm/api/resources/cohort/types/SearchConcept.mjs

@@ -0,0 +1,4 @@
+/**
+ * This file was auto-generated by Fern from our API Definition.
+ */
+export {};

package/dist/esm/api/resources/cohort/types/index.d.mts

@@ -0,0 +1,2 @@
+export * from "./CohortResponse.mjs";
+export * from "./SearchConcept.mjs";

package/dist/esm/api/resources/cohort/types/index.mjs

@@ -0,0 +1,2 @@
+export * from "./CohortResponse.mjs";
+export * from "./SearchConcept.mjs";