optave-codegraph 3.13.0

package/dist/domain/graph/builder/incremental.js.map

@@ -0,0 +1 @@
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package/dist/domain/graph/builder/native-db-proxy.d.ts

@@ -0,0 +1,24 @@
+/**
+ * NativeDbProxy — wraps a NativeDatabase (rusqlite via napi-rs) to satisfy the
+ * BetterSqlite3Database interface.  When the native addon is available, the
+ * build pipeline uses this proxy as `ctx.db` so that every stage operates on a
+ * single rusqlite connection — no dual-connection WAL corruption, no
+ * open/close/reopen dance.
+ *
+ * When native is unavailable, the pipeline falls back to real better-sqlite3.
+ */
+import type { BetterSqlite3Database, NativeDatabase, SqliteStatement } from '../../../types.js';
+export declare class NativeDbProxy implements BetterSqlite3Database {
+    #private;
+    /** Advisory lock path — set by the pipeline so closeDb() can release it. */
+    __lockPath?: string;
+    constructor(nativeDb: NativeDatabase);
+    prepare<TRow = unknown>(sql: string): SqliteStatement<TRow>;
+    exec(sql: string): this;
+    pragma(sql: string): unknown;
+    close(): void;
+    get open(): boolean;
+    get name(): string;
+    transaction<F extends (...args: any[]) => any>(fn: F): (...args: F extends (...a: infer A) => unknown ? A : never) => ReturnType<F>;
+}
+//# sourceMappingURL=native-db-proxy.d.ts.map

package/dist/domain/graph/builder/native-db-proxy.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"native-db-proxy.d.ts","sourceRoot":"","sources":["../../../../src/domain/graph/builder/native-db-proxy.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EAAE,qBAAqB,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AAQhG,qBAAa,aAAc,YAAW,qBAAqB;;IAEzD,4EAA4E;IAC5E,UAAU,CAAC,EAAE,MAAM,CAAC;gBAER,QAAQ,EAAE,cAAc;IAIpC,OAAO,CAAC,IAAI,GAAG,OAAO,EAAE,GAAG,EAAE,MAAM,GAAG,eAAe,CAAC,IAAI,CAAC;IAgC3D,IAAI,CAAC,GAAG,EAAE,MAAM,GAAG,IAAI;IAKvB,MAAM,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO;IAI5B,KAAK,IAAI,IAAI;IAKb,IAAI,IAAI,IAAI,OAAO,CAElB;IAED,IAAI,IAAI,IAAI,MAAM,CAEjB;IAED,WAAW,CAAC,CAAC,SAAS,CAAC,GAAG,IAAI,EAAE,GAAG,EAAE,KAAK,GAAG,EAC3C,EAAE,EAAE,CAAC,GACJ,CAAC,GAAG,IAAI,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,MAAM,CAAC,KAAK,OAAO,GAAG,CAAC,GAAG,KAAK,KAAK,UAAU,CAAC,CAAC,CAAC;CAoBhF"}

package/dist/domain/graph/builder/native-db-proxy.js

@@ -0,0 +1,91 @@
+/**
+ * NativeDbProxy — wraps a NativeDatabase (rusqlite via napi-rs) to satisfy the
+ * BetterSqlite3Database interface.  When the native addon is available, the
+ * build pipeline uses this proxy as `ctx.db` so that every stage operates on a
+ * single rusqlite connection — no dual-connection WAL corruption, no
+ * open/close/reopen dance.
+ *
+ * When native is unavailable, the pipeline falls back to real better-sqlite3.
+ */
+/** Sanitize params for napi-rs: better-sqlite3 treats `undefined` as NULL,
+ *  but serde_json cannot represent `undefined`. Replace with `null`. */
+function sanitize(params) {
+    return params.map((p) => (p === undefined ? null : p));
+}
+export class NativeDbProxy {
+    #ndb;
+    /** Advisory lock path — set by the pipeline so closeDb() can release it. */
+    __lockPath;
+    constructor(nativeDb) {
+        this.#ndb = nativeDb;
+    }
+    prepare(sql) {
+        const ndb = this.#ndb;
+        // Only INSERT statements need last_insert_rowid — skip the extra napi
+        // call for UPDATE/DELETE/other DML to halve per-statement overhead.
+        const isInsert = sql.trimStart().substring(0, 6).toUpperCase() === 'INSERT';
+        const stmt = {
+            all(...params) {
+                return ndb.queryAll(sql, sanitize(params));
+            },
+            get(...params) {
+                return (ndb.queryGet(sql, sanitize(params)) ?? undefined);
+            },
+            run(...params) {
+                ndb.queryAll(sql, sanitize(params));
+                if (isInsert) {
+                    const row = ndb.queryGet('SELECT last_insert_rowid() AS rid', []);
+                    return { changes: 0, lastInsertRowid: row?.rid ?? 0 };
+                }
+                return { changes: 0, lastInsertRowid: 0 };
+            },
+            iterate() {
+                throw new Error('iterate() is not supported via NativeDbProxy');
+            },
+            raw() {
+                return stmt; // no-op — .raw() is not used in the build pipeline
+            },
+        };
+        return stmt;
+    }
+    exec(sql) {
+        this.#ndb.exec(sql);
+        return this;
+    }
+    pragma(sql) {
+        return this.#ndb.pragma(sql);
+    }
+    close() {
+        // No-op: the pipeline manages the NativeDatabase lifecycle directly.
+        // closeDbPair() calls nativeDb.close() separately.
+    }
+    get open() {
+        return this.#ndb.isOpen;
+    }
+    get name() {
+        return this.#ndb.dbPath;
+    }
+    transaction(fn) {
+        const ndb = this.#ndb;
+        return ((...args) => {
+            // NOTE: nested transactions (savepoints) are not supported — ensure callers
+            // do not invoke a transaction() wrapper from within an existing transaction.
+            ndb.exec('BEGIN');
+            try {
+                const result = fn(...args);
+                ndb.exec('COMMIT');
+                return result;
+            }
+            catch (e) {
+                try {
+                    ndb.exec('ROLLBACK');
+                }
+                catch {
+                    // Ignore rollback errors — the original error is more important
+                }
+                throw e;
+            }
+        });
+    }
+}
+//# sourceMappingURL=native-db-proxy.js.map

package/dist/domain/graph/builder/native-db-proxy.js.map

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package/dist/domain/graph/builder/pipeline.d.ts

@@ -0,0 +1,9 @@
+import type { BuildGraphOpts, BuildResult } from '../../../types.js';
+export { computeWasmOnlyStaleFiles, type WasmOnlyStaleFilesInput, } from './stages/native-orchestrator.js';
+/**
+ * Build the dependency graph for a codebase.
+ *
+ * Signature and return value are identical to the original monolithic buildGraph().
+ */
+export declare function buildGraph(rootDir: string, opts?: BuildGraphOpts): Promise<BuildResult | undefined>;
+//# sourceMappingURL=pipeline.d.ts.map

package/dist/domain/graph/builder/pipeline.d.ts.map

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package/dist/domain/graph/builder/pipeline.js

@@ -0,0 +1,448 @@
+/**
+ * Pipeline orchestrator — runs build stages sequentially through a shared PipelineContext.
+ *
+ * This is the heart of the builder refactor (ROADMAP 3.9): the monolithic buildGraph()
+ * is decomposed into independently testable stages that communicate via PipelineContext.
+ */
+import fs from 'node:fs';
+import path from 'node:path';
+import { performance } from 'node:perf_hooks';
+import { closeDb, closeDbPair, getBuildMeta, initSchema, MIGRATIONS, openDb, } from '../../../db/index.js';
+import { computeConfigHash, detectWorkspaces, getLastAppliedGlobalConfig, getLastAppliedGlobalPath, loadConfig, promptForConsentIfNeeded, } from '../../../infrastructure/config.js';
+import { debug, info, warn } from '../../../infrastructure/logger.js';
+import { loadNative } from '../../../infrastructure/native.js';
+import { toErrorMessage } from '../../../shared/errors.js';
+import { CODEGRAPH_VERSION } from '../../../shared/version.js';
+import { getActiveEngine } from '../../parser.js';
+import { writeJournalHeader } from '../journal.js';
+import { setWorkspaces } from '../resolve.js';
+import { PipelineContext } from './context.js';
+import { loadPathAliases } from './helpers.js';
+import { buildEdges } from './stages/build-edges.js';
+import { buildStructure } from './stages/build-structure.js';
+// Pipeline stages
+import { collectFiles } from './stages/collect-files.js';
+import { detectChanges, detectNoChanges } from './stages/detect-changes.js';
+import { finalize } from './stages/finalize.js';
+import { insertNodes } from './stages/insert-nodes.js';
+import { closeNativeDb, refreshJsDb, reopenNativeDb, suspendNativeDb, } from './stages/native-db-lifecycle.js';
+import { tryNativeOrchestrator } from './stages/native-orchestrator.js';
+import { parseFiles } from './stages/parse-files.js';
+import { resolveImports } from './stages/resolve-imports.js';
+import { runAnalyses } from './stages/run-analyses.js';
+// Re-export computeWasmOnlyStaleFiles for backward compatibility with tests
+// that import from this module path (#1073 unit tests).
+export { computeWasmOnlyStaleFiles, } from './stages/native-orchestrator.js';
+// ── Setup helpers ───────────────────────────────────────────────────────
+function initializeEngine(ctx) {
+    ctx.engineOpts = {
+        // Priority: CLI --engine flag > .codegraphrc.json build.engine > 'auto'.
+        // ctx.config is already populated by the time initializeEngine is called.
+        engine: ctx.opts.engine ?? ctx.config.build.engine ?? 'auto',
+        dataflow: ctx.opts.dataflow !== false,
+        ast: ctx.opts.ast !== false,
+        // nativeDb and WAL callbacks are set later when NativeDatabase is opened
+        // (deferred to skip overhead on no-op rebuilds).
+        nativeDb: undefined,
+        suspendJsDb: undefined,
+        resumeJsDb: undefined,
+    };
+    const { name: engineName, version: engineVersion, binaryVersion: nativeBinaryVersion, } = getActiveEngine(ctx.engineOpts);
+    ctx.engineName = engineName;
+    ctx.engineVersion = engineVersion;
+    ctx.nativeBinaryVersion = nativeBinaryVersion;
+    info(`Using ${engineName} engine${engineVersion ? ` (v${engineVersion})` : ''}`);
+}
+function checkEngineSchemaMismatch(ctx) {
+    const lastMigration = MIGRATIONS[MIGRATIONS.length - 1];
+    ctx.schemaVersion = lastMigration?.version ?? 0;
+    ctx.forceFullRebuild = false;
+    if (!ctx.incremental)
+        return;
+    // NativeDatabase is deferred until after change detection, so always use
+    // better-sqlite3 for metadata reads here. Reads are safe — WAL conflicts
+    // only arise from concurrent writes.
+    const meta = (key) => getBuildMeta(ctx.db, key);
+    const prevEngine = meta('engine');
+    if (prevEngine && prevEngine !== ctx.engineName) {
+        info(`Engine changed (${prevEngine} → ${ctx.engineName}), promoting to full rebuild.`);
+        ctx.forceFullRebuild = true;
+    }
+    const prevSchema = meta('schema_version');
+    if (prevSchema && Number(prevSchema) !== ctx.schemaVersion) {
+        info(`Schema version changed (${prevSchema} → ${ctx.schemaVersion}), promoting to full rebuild.`);
+        ctx.forceFullRebuild = true;
+    }
+    // When the native engine is active, the Rust orchestrator writes
+    // build_meta.codegraph_version = CARGO_PKG_VERSION (the binary's own value).
+    // Compare against the same value here so a CI hot-swap that leaves the
+    // platform package.json behind doesn't trigger a perpetual full-rebuild
+    // loop on every incremental (#1066).
+    const effectiveVersion = ctx.engineName === 'native' && ctx.nativeBinaryVersion
+        ? ctx.nativeBinaryVersion
+        : CODEGRAPH_VERSION;
+    const prevVersion = meta('codegraph_version');
+    if (prevVersion && prevVersion !== effectiveVersion) {
+        info(`Codegraph version changed (${prevVersion} → ${effectiveVersion}), promoting to full rebuild.`);
+        ctx.forceFullRebuild = true;
+    }
+    // Config hash — promotes to full rebuild when build-relevant config changes
+    // (include/exclude/ignoreDirs/extensions/aliases/build.*).
+    // This closes the pre-existing config-change gap and covers the new global-config layer.
+    const currentConfigHash = computeConfigHash(ctx.config);
+    const prevConfigHash = meta('config_hash');
+    if (prevConfigHash && prevConfigHash !== currentConfigHash) {
+        info('Build-relevant config changed, promoting to full rebuild.');
+        ctx.forceFullRebuild = true;
+    }
+}
+function warnOnEmbeddingsWipe(ctx) {
+    const willBeFullBuild = !ctx.incremental || ctx.forceFullRebuild;
+    if (!willBeFullBuild)
+        return;
+    let count = 0;
+    try {
+        count = ctx.db.prepare('SELECT COUNT(*) AS c FROM embeddings').get().c;
+    }
+    catch {
+        return; // embeddings table missing — nothing to warn about
+    }
+    if (count === 0)
+        return;
+    warn(`Full rebuild will discard ${count} embedding${count === 1 ? '' : 's'}; re-run \`codegraph embed\` after the build.`);
+}
+function loadAliases(ctx) {
+    ctx.aliases = loadPathAliases(ctx.rootDir);
+    if (ctx.config.aliases) {
+        for (const [key, value] of Object.entries(ctx.config.aliases)) {
+            if (typeof value !== 'string') {
+                warn(`Alias target for "${key}" must be a string, got ${typeof value}. Skipping.`);
+                continue;
+            }
+            const pattern = key.endsWith('/') ? `${key}*` : key;
+            const target = path.resolve(ctx.rootDir, value);
+            ctx.aliases.paths[pattern] = [target.endsWith('/') ? `${target}*` : `${target}/*`];
+        }
+    }
+    if (ctx.aliases.baseUrl || Object.keys(ctx.aliases.paths).length > 0) {
+        info(`Loaded path aliases: baseUrl=${ctx.aliases.baseUrl || 'none'}, ${Object.keys(ctx.aliases.paths).length} path mappings`);
+    }
+}
+function setupPipeline(ctx) {
+    ctx.rootDir = path.resolve(ctx.rootDir);
+    ctx.dbPath = ctx.opts.dbPath
+        ? path.resolve(ctx.opts.dbPath)
+        : path.join(ctx.rootDir, '.codegraph', 'graph.db');
+    // Load config first so build.engine from .codegraphrc.json is available for
+    // the engine-pref fallback below (ctx.opts.engine > config.build.engine > 'auto').
+    ctx.config = loadConfig(ctx.rootDir, { userConfig: ctx.opts.userConfig });
+    // Detect whether native engine is available.
+    // Priority: CLI --engine flag > .codegraphrc.json build.engine > 'auto'.
+    const enginePref = ctx.opts.engine ?? ctx.config.build.engine ?? 'auto';
+    const native = enginePref !== 'wasm' ? loadNative() : null;
+    ctx.nativeAvailable = !!native?.NativeDatabase;
+    // Always use better-sqlite3 for setup — it's cheap (~4ms) and only needed
+    // for metadata reads (schema mismatch check). NativeDatabase.openReadWrite
+    // is deferred to tryNativeOrchestrator, saving ~60ms on incremental builds
+    // where the Rust orchestrator handles the full pipeline, and avoiding the
+    // cost entirely on no-op builds that exit before reaching the orchestrator.
+    const dir = path.dirname(ctx.dbPath);
+    if (!fs.existsSync(dir))
+        fs.mkdirSync(dir, { recursive: true });
+    ctx.db = openDb(ctx.dbPath);
+    initSchema(ctx.db);
+    // Merge caller-supplied excludes on top of the file-config excludes so
+    // programmatic callers (e.g. benchmark scripts) can extend exclusion
+    // without mutating .codegraphrc.json. Native orchestrator picks this up
+    // automatically — it reads exclude off the serialized ctx.config below.
+    if (ctx.opts.exclude?.length) {
+        ctx.config = {
+            ...ctx.config,
+            exclude: [...(ctx.config.exclude ?? []), ...ctx.opts.exclude],
+        };
+    }
+    ctx.incremental =
+        ctx.opts.incremental !== false && ctx.config.build && ctx.config.build.incremental !== false;
+    // ── Build-time global-config notice ──────────────────────────────
+    // Use the already-parsed and sanitized global config cached by loadConfig —
+    // avoids a second disk read and the TOCTOU window between loadConfig and here.
+    const appliedGlobalPath = getLastAppliedGlobalPath();
+    if (appliedGlobalPath) {
+        const buildAffectingKeys = [
+            'include',
+            'exclude',
+            'ignoreDirs',
+            'extensions',
+            'aliases',
+            'build',
+        ];
+        const globalData = getLastAppliedGlobalConfig();
+        if (globalData) {
+            const injectedKeys = buildAffectingKeys.filter((k) => k in globalData);
+            if (injectedKeys.length > 0) {
+                process.stderr.write(`ℹ global config applied (${appliedGlobalPath}) — injecting: ${injectedKeys.join(', ')} · --no-user-config to ignore\n`);
+            }
+        }
+    }
+    initializeEngine(ctx);
+    checkEngineSchemaMismatch(ctx);
+    warnOnEmbeddingsWipe(ctx);
+    loadAliases(ctx);
+    // Workspace packages (monorepo)
+    const workspaces = detectWorkspaces(ctx.rootDir);
+    if (workspaces.size > 0) {
+        setWorkspaces(ctx.rootDir, workspaces);
+        info(`Detected ${workspaces.size} workspace packages`);
+    }
+    ctx.timing.setupMs = performance.now() - ctx.buildStart;
+}
+function formatTimingResult(ctx) {
+    const t = ctx.timing;
+    return {
+        phases: {
+            setupMs: +(t.setupMs ?? 0).toFixed(1),
+            collectMs: +(t.collectMs ?? 0).toFixed(1),
+            detectMs: +(t.detectMs ?? 0).toFixed(1),
+            parseMs: +(t.parseMs ?? 0).toFixed(1),
+            insertMs: +(t.insertMs ?? 0).toFixed(1),
+            resolveMs: +(t.resolveMs ?? 0).toFixed(1),
+            edgesMs: +(t.edgesMs ?? 0).toFixed(1),
+            structureMs: +(t.structureMs ?? 0).toFixed(1),
+            rolesMs: +(t.rolesMs ?? 0).toFixed(1),
+            astMs: +(t.astMs ?? 0).toFixed(1),
+            complexityMs: +(t.complexityMs ?? 0).toFixed(1),
+            cfgMs: +(t.cfgMs ?? 0).toFixed(1),
+            dataflowMs: +(t.dataflowMs ?? 0).toFixed(1),
+            finalizeMs: +(t.finalizeMs ?? 0).toFixed(1),
+        },
+    };
+}
+// Native db lifecycle and orchestrator helpers live in dedicated stage
+// modules — see `./stages/native-db-lifecycle.ts` and `./stages/native-orchestrator.ts`.
+// ── Pipeline stages execution ───────────────────────────────────────────
+async function runPipelineStages(ctx) {
+    // ── WASM / fallback dual-connection mode ─────────────────────────────
+    // NativeDatabase is deferred — not opened during setup. collectFiles and
+    // detectChanges only need better-sqlite3. If no files changed, we exit
+    // early without ever opening the native connection, saving ~5ms.
+    // If nativeDb was opened by tryNativeOrchestrator (which fell through),
+    // suspend it now to avoid dual-connection WAL corruption during stages.
+    if (ctx.db && ctx.nativeDb) {
+        suspendNativeDb(ctx, 'pre-collect');
+        // When nativeFirstProxy is true, ctx.db is a NativeDbProxy wrapping the
+        // now-closed NativeDatabase. Replace it with a real better-sqlite3
+        // connection so the JS pipeline stages can operate normally.
+        if (ctx.nativeFirstProxy) {
+            ctx.db = openDb(ctx.dbPath);
+            ctx.nativeFirstProxy = false;
+        }
+    }
+    await collectFiles(ctx);
+    await detectChanges(ctx);
+    if (ctx.earlyExit)
+        return;
+    await parseFiles(ctx);
+    // For small incremental builds (≤smallFilesThreshold files), skip the nativeDb open/close
+    // cycle for insertNodes — the WAL checkpoint + connection churn (~5-10ms)
+    // exceeds the napi bulk-insert savings on a handful of files. The JS
+    // fallback path inside insertNodes handles this case efficiently.
+    const smallIncremental = !ctx.isFullBuild && ctx.allSymbols.size <= ctx.config.build.smallFilesThreshold;
+    if (ctx.nativeAvailable && ctx.engineName === 'native' && !smallIncremental) {
+        reopenNativeDb(ctx, 'insertNodes');
+    }
+    await insertNodes(ctx);
+    // Close nativeDb after insertNodes — remaining pipeline stages use JS paths.
+    if (ctx.nativeDb && ctx.db) {
+        closeNativeDb(ctx, 'post-insertNodes');
+        refreshJsDb(ctx);
+    }
+    await resolveImports(ctx);
+    await buildEdges(ctx);
+    await buildStructure(ctx);
+    // Reopen nativeDb for feature modules (ast, cfg, complexity, dataflow).
+    // Skip for small incremental builds — same rationale as insertNodes above.
+    //
+    // Perf: do ONE upfront FULL checkpoint to flush JS WAL pages so Rust
+    // can see the latest rows, then make suspendJsDb/resumeJsDb no-ops.
+    // Previously each feature called wal_checkpoint(TRUNCATE) individually
+    // (~68ms each × 3-4 features = ~200-270ms overhead on incremental builds).
+    if (ctx.nativeAvailable && !smallIncremental) {
+        reopenNativeDb(ctx, 'analyses');
+        if (ctx.nativeDb && ctx.engineOpts) {
+            ctx.db.pragma('wal_checkpoint(FULL)');
+            ctx.engineOpts.nativeDb = ctx.nativeDb;
+            ctx.engineOpts.suspendJsDb = () => { };
+            ctx.engineOpts.resumeJsDb = () => { };
+        }
+        if (!ctx.nativeDb && ctx.engineOpts) {
+            ctx.engineOpts.nativeDb = undefined;
+            ctx.engineOpts.suspendJsDb = undefined;
+            ctx.engineOpts.resumeJsDb = undefined;
+        }
+    }
+    await runAnalyses(ctx);
+    // Release WASM trees deterministically on the success path — same cleanup
+    // as the error-path catch block.  Without this, trees stay allocated until
+    // GC collects ctx, holding WASM memory for the rest of the build (#931).
+    if (ctx.allSymbols?.size > 0) {
+        for (const [, symbols] of ctx.allSymbols) {
+            const tree = symbols._tree;
+            if (tree && typeof tree.delete === 'function') {
+                try {
+                    tree.delete();
+                }
+                catch {
+                    /* ignore cleanup errors */
+                }
+            }
+            symbols._tree = undefined;
+        }
+    }
+    // Flush Rust WAL writes (AST, complexity, CFG, dataflow) so the JS
+    // connection and any post-build readers can see them.  One TRUNCATE
+    // here replaces the N per-feature resumeJsDb checkpoints (#checkpoint-opt).
+    if (ctx.nativeDb) {
+        try {
+            ctx.nativeDb.exec('PRAGMA wal_checkpoint(TRUNCATE)');
+        }
+        catch (e) {
+            debug(`post-analyses WAL checkpoint failed: ${toErrorMessage(e)}`);
+        }
+        refreshJsDb(ctx);
+    }
+    await finalize(ctx);
+}
+// ── Main entry point ────────────────────────────────────────────────────
+/**
+ * Build the dependency graph for a codebase.
+ *
+ * Signature and return value are identical to the original monolithic buildGraph().
+ */
+export async function buildGraph(rootDir, opts = {}) {
+    const ctx = new PipelineContext();
+    ctx.buildStart = performance.now();
+    ctx.opts = opts;
+    ctx.rootDir = rootDir;
+    try {
+        // Interactive consent prompt — only fires when the caller opts in (build
+        // command with TTY), a global file exists, and the repo is undecided.
+        if (opts.promptForConsent) {
+            await promptForConsentIfNeeded(rootDir);
+        }
+        setupPipeline(ctx);
+        // ── JS-side fast-skip for native incremental (#1054) ──────────────
+        // The Rust orchestrator's internal early-exit fires reliably locally
+        // but not in CI, where every no-op rebuild was paying the full ~2s
+        // pipeline cost. A read-only mtime+size check here matches WASM's
+        // ~20ms early-exit and skips the orchestrator entirely when no
+        // source files have changed. Tier-2 hashing is left to the native
+        // side: any mismatch falls through and lets Rust's detect_changes
+        // remain the source of truth.
+        //
+        // Diagnostic logging gated by CODEGRAPH_FAST_SKIP_DIAG (#1066) — when
+        // any of the call-site guards short-circuit (forceFullRebuild,
+        // engineName, scope, etc.) we log the reason so the bench gate run
+        // produces observable output even if `detectNoChanges` is never
+        // entered.
+        // Reads from config (which applies CODEGRAPH_FAST_SKIP_DIAG via applyEnvOverrides).
+        const fastSkipDiag = ctx.config.build.fastSkipDiag;
+        if (fastSkipDiag) {
+            const reasons = [];
+            if (!ctx.nativeAvailable)
+                reasons.push('nativeAvailable=false');
+            if (ctx.engineName !== 'native')
+                reasons.push(`engineName=${ctx.engineName}`);
+            if (!ctx.incremental)
+                reasons.push('incremental=false');
+            if (ctx.forceFullRebuild)
+                reasons.push('forceFullRebuild=true');
+            if (ctx.opts.scope)
+                reasons.push('scope=set');
+            if (reasons.length > 0) {
+                info(`[fast-skip] false: pre-flight gate skipped — ${reasons.join(', ')}`);
+            }
+        }
+        if (ctx.nativeAvailable &&
+            ctx.engineName === 'native' &&
+            ctx.incremental &&
+            !ctx.forceFullRebuild &&
+            !ctx.opts.scope) {
+            try {
+                await collectFiles(ctx);
+                if (detectNoChanges(ctx.db, ctx.allFiles, ctx.rootDir, ctx.opts)) {
+                    info('No changes detected. Graph is up to date.');
+                    writeJournalHeader(ctx.rootDir, Date.now());
+                    closeDb(ctx.db);
+                    return;
+                }
+            }
+            catch (err) {
+                // Pre-flight is best-effort — any failure falls through to the
+                // orchestrator, which performs its own complete detection.
+                // Reset ctx.allFiles so runPipelineStages re-collects under its own
+                // engine state if we ended up partially populated before throwing.
+                ctx.allFiles = undefined;
+                ctx.discoveredDirs = undefined;
+                debug(`native fast-skip pre-flight failed: ${toErrorMessage(err)}`);
+            }
+        }
+        // ── Rust orchestrator fast path (#695) ────────────────────────────
+        // When available, run the entire build pipeline in Rust with zero
+        // napi crossings (eliminates WAL dual-connection dance). Falls back
+        // to the JS pipeline on failure or when native is unavailable.
+        try {
+            const nativeResult = await tryNativeOrchestrator(ctx);
+            if (nativeResult === 'early-exit')
+                return;
+            if (nativeResult)
+                return nativeResult;
+        }
+        catch (err) {
+            warn(`Native build orchestrator failed, falling back to JS pipeline: ${toErrorMessage(err)}`);
+            // The version gate in checkEngineSchemaMismatch was skipped because
+            // nativeAvailable was true. Now that we're falling back to the JS
+            // pipeline, perform the codegraph_version check here so a version
+            // bump still promotes to a full rebuild (#928).
+            if (ctx.incremental && !ctx.forceFullRebuild) {
+                const prevVersion = getBuildMeta(ctx.db, 'codegraph_version');
+                if (prevVersion && prevVersion !== CODEGRAPH_VERSION) {
+                    info(`Codegraph version changed (${prevVersion} → ${CODEGRAPH_VERSION}), promoting to full rebuild.`);
+                    ctx.forceFullRebuild = true;
+                    // Re-check embeddings: the initial warnOnEmbeddingsWipe ran before
+                    // forceFullRebuild was set here, so the silent-data-loss guard
+                    // would otherwise miss this late-promotion path (#986 follow-up).
+                    warnOnEmbeddingsWipe(ctx);
+                }
+            }
+        }
+        await runPipelineStages(ctx);
+    }
+    catch (err) {
+        if (!ctx.earlyExit) {
+            // Release WASM trees before closing DB to prevent V8 crash during
+            // GC cleanup of orphaned WASM objects (#931).
+            if (ctx.allSymbols?.size > 0) {
+                for (const [, symbols] of ctx.allSymbols) {
+                    const tree = symbols._tree;
+                    if (tree && typeof tree.delete === 'function') {
+                        try {
+                            tree.delete();
+                        }
+                        catch {
+                            /* ignore cleanup errors */
+                        }
+                    }
+                    symbols._tree = undefined;
+                }
+            }
+            if (ctx.db) {
+                closeDbPair({ db: ctx.db, nativeDb: ctx.nativeDb });
+            }
+        }
+        throw err;
+    }
+    if (ctx.earlyExit)
+        return;
+    return formatTimingResult(ctx);
+}
+//# sourceMappingURL=pipeline.js.map