optave-codegraph 3.13.0

package/dist/domain/analysis/module-map.js

@@ -0,0 +1,468 @@
+import path from 'node:path';
+import { openReadonlyOrFail, openReadonlyWithNative, testFilterSQL } from '../../db/index.js';
+import { loadConfig } from '../../infrastructure/config.js';
+import { debug } from '../../infrastructure/logger.js';
+import { isTestFile } from '../../infrastructure/test-filter.js';
+import { DEAD_ROLE_PREFIX } from '../../shared/kinds.js';
+import { findCycles } from '../graph/cycles.js';
+import { LANGUAGE_REGISTRY } from '../parser.js';
+export const FALSE_POSITIVE_NAMES = new Set([
+    'run',
+    'get',
+    'set',
+    'init',
+    'start',
+    'handle',
+    'main',
+    'new',
+    'create',
+    'update',
+    'delete',
+    'process',
+    'execute',
+    'call',
+    'apply',
+    'setup',
+    'render',
+    'build',
+    'load',
+    'save',
+    'find',
+    'make',
+    'open',
+    'close',
+    'reset',
+    'send',
+    'read',
+    'write',
+]);
+export const FALSE_POSITIVE_CALLER_THRESHOLD = 20;
+// ---------------------------------------------------------------------------
+// Section helpers
+// ---------------------------------------------------------------------------
+function countNodesByKind(db, noTests) {
+    const testFilter = testFilterSQL('file', noTests);
+    const nodeRows = db
+        .prepare(`SELECT kind, COUNT(*) as c FROM nodes WHERE 1=1 ${testFilter} GROUP BY kind`)
+        .all();
+    const byKind = {};
+    let total = 0;
+    for (const r of nodeRows) {
+        byKind[r.kind] = r.c;
+        total += r.c;
+    }
+    return { total, byKind };
+}
+function countEdgesByKind(db, noTests) {
+    let edgeRows;
+    if (noTests) {
+        // Join edges with source node to filter out test files in SQL
+        const srcFilter = testFilterSQL('ns.file', true);
+        const tgtFilter = testFilterSQL('nt.file', true);
+        edgeRows = db
+            .prepare(`
+        SELECT e.kind, COUNT(*) as c FROM edges e
+        JOIN nodes ns ON e.source_id = ns.id
+        JOIN nodes nt ON e.target_id = nt.id
+        WHERE 1=1 ${srcFilter} ${tgtFilter}
+        GROUP BY e.kind
+      `)
+            .all();
+    }
+    else {
+        edgeRows = db.prepare('SELECT kind, COUNT(*) as c FROM edges GROUP BY kind').all();
+    }
+    const byKind = {};
+    let total = 0;
+    for (const r of edgeRows) {
+        byKind[r.kind] = r.c;
+        total += r.c;
+    }
+    return { total, byKind };
+}
+function countFilesByLanguage(db, noTests) {
+    const extToLang = new Map();
+    for (const entry of LANGUAGE_REGISTRY) {
+        for (const ext of entry.extensions) {
+            extToLang.set(ext, entry.id);
+        }
+    }
+    let fileNodes = db.prepare("SELECT file FROM nodes WHERE kind = 'file'").all();
+    if (noTests)
+        fileNodes = fileNodes.filter((n) => !isTestFile(n.file));
+    const byLanguage = {};
+    for (const row of fileNodes) {
+        const ext = path.extname(row.file).toLowerCase();
+        const lang = extToLang.get(ext) || 'other';
+        byLanguage[lang] = (byLanguage[lang] || 0) + 1;
+    }
+    return { total: fileNodes.length, languages: Object.keys(byLanguage).length, byLanguage };
+}
+function findHotspots(db, noTests, limit) {
+    const testFilter = testFilterSQL('n.file', noTests);
+    const hotspotRows = db
+        .prepare(`
+      SELECT n.file,
+        COALESCE(fi.cnt, 0) as fan_in,
+        COALESCE(fo.cnt, 0) as fan_out
+      FROM nodes n
+      LEFT JOIN (
+        SELECT target_id, COUNT(*) AS cnt FROM edges
+        WHERE kind NOT IN ('contains', 'parameter_of', 'receiver')
+        GROUP BY target_id
+      ) fi ON fi.target_id = n.id
+      LEFT JOIN (
+        SELECT source_id, COUNT(*) AS cnt FROM edges
+        WHERE kind NOT IN ('contains', 'parameter_of', 'receiver')
+        GROUP BY source_id
+      ) fo ON fo.source_id = n.id
+      WHERE n.kind = 'file' ${testFilter}
+      ORDER BY COALESCE(fi.cnt, 0) + COALESCE(fo.cnt, 0) DESC
+      LIMIT ?
+    `)
+        .all(limit);
+    return hotspotRows.map((r) => ({
+        file: r.file,
+        fanIn: r.fan_in,
+        fanOut: r.fan_out,
+    }));
+}
+function getEmbeddingsInfo(db) {
+    try {
+        const count = db.prepare('SELECT COUNT(*) as c FROM embeddings').get();
+        if (count && count.c > 0) {
+            const meta = {};
+            const metaRows = db.prepare('SELECT key, value FROM embedding_meta').all();
+            for (const r of metaRows)
+                meta[r.key] = r.value;
+            return {
+                count: count.c,
+                model: meta.model || null,
+                dim: meta.dim ? parseInt(meta.dim, 10) : null,
+                builtAt: meta.built_at || null,
+            };
+        }
+    }
+    catch (e) {
+        debug(`embeddings lookup skipped: ${e.message}`);
+    }
+    return null;
+}
+function countCallEdgesByTechnique(db, testFilter) {
+    // testFilter uses n.file — join source node to apply the same file-scope as
+    // the rest of computeQualityMetrics so --no-tests is consistent.
+    const rows = db
+        .prepare(`SELECT e.technique, COUNT(*) as c
+       FROM edges e
+       JOIN nodes n ON e.source_id = n.id
+       WHERE e.kind = 'calls' AND e.technique IS NOT NULL ${testFilter}
+       GROUP BY e.technique`)
+        .all();
+    const byTechnique = {};
+    for (const r of rows)
+        byTechnique[r.technique] = r.c;
+    return byTechnique;
+}
+function computeQualityMetrics(db, testFilter, fpThreshold = FALSE_POSITIVE_CALLER_THRESHOLD) {
+    const qualityTestFilter = testFilter.replace(/n\.file/g, 'file');
+    const totalCallable = db
+        .prepare(`SELECT COUNT(*) as c FROM nodes WHERE kind IN ('function', 'method') ${qualityTestFilter}`)
+        .get().c;
+    const callableWithCallers = db
+        .prepare(`
+      SELECT COUNT(DISTINCT e.target_id) as c FROM edges e
+      JOIN nodes n ON e.target_id = n.id
+      WHERE e.kind = 'calls' AND n.kind IN ('function', 'method') ${testFilter}
+    `)
+        .get().c;
+    const callerCoverage = totalCallable > 0 ? callableWithCallers / totalCallable : 0;
+    const totalCallEdges = db.prepare("SELECT COUNT(*) as c FROM edges WHERE kind = 'calls'").get().c;
+    // Exclude sink edges (confidence=0.0) from the confidence ratio: they flag
+    // unresolvable dynamic calls (eval/computed-key) and are not resolution
+    // attempts — including them in the denominator unfairly penalises the metric.
+    const resolvedCallEdges = db.prepare("SELECT COUNT(*) as c FROM edges WHERE kind = 'calls' AND confidence > 0").get().c;
+    const highConfCallEdges = db
+        .prepare("SELECT COUNT(*) as c FROM edges WHERE kind = 'calls' AND confidence >= 0.7")
+        .get().c;
+    const callConfidence = resolvedCallEdges > 0 ? highConfCallEdges / resolvedCallEdges : 0;
+    const falsePositiveWarnings = buildFalsePositiveWarnings(queryFalsePositiveRows(db, fpThreshold));
+    let fpEdgeCount = 0;
+    for (const fp of falsePositiveWarnings)
+        fpEdgeCount += fp.callerCount;
+    const falsePositiveRatio = totalCallEdges > 0 ? fpEdgeCount / totalCallEdges : 0;
+    const score = computeQualityScore(callerCoverage, callConfidence, falsePositiveRatio);
+    const byTechnique = countCallEdgesByTechnique(db, testFilter);
+    return {
+        score,
+        callerCoverage: {
+            ratio: callerCoverage,
+            percentage: Math.round(callerCoverage * 100),
+            covered: callableWithCallers,
+            total: totalCallable,
+            byTechnique: Object.keys(byTechnique).length > 0 ? byTechnique : undefined,
+        },
+        callConfidence: {
+            ratio: callConfidence,
+            highConf: highConfCallEdges,
+            total: resolvedCallEdges,
+        },
+        falsePositiveWarnings,
+    };
+}
+function countRoles(db, noTests) {
+    const testFilter = testFilterSQL('file', noTests);
+    const roleRows = db
+        .prepare(`SELECT role, COUNT(*) as c FROM nodes WHERE role IS NOT NULL ${testFilter} GROUP BY role`)
+        .all();
+    const roles = {};
+    let deadTotal = 0;
+    for (const r of roleRows) {
+        roles[r.role] = r.c;
+        if (r.role.startsWith(DEAD_ROLE_PREFIX))
+            deadTotal += r.c;
+    }
+    if (deadTotal > 0)
+        roles.dead = deadTotal;
+    return roles;
+}
+function getComplexitySummary(db, testFilter) {
+    try {
+        const cRows = db
+            .prepare(`SELECT fc.cognitive, fc.cyclomatic, fc.max_nesting, fc.maintainability_index
+         FROM function_complexity fc JOIN nodes n ON fc.node_id = n.id
+         WHERE n.kind IN ('function','method') ${testFilter}`)
+            .all();
+        if (cRows.length > 0) {
+            const miValues = cRows.map((r) => r.maintainability_index || 0);
+            return {
+                analyzed: cRows.length,
+                avgCognitive: +(cRows.reduce((s, r) => s + r.cognitive, 0) / cRows.length).toFixed(1),
+                avgCyclomatic: +(cRows.reduce((s, r) => s + r.cyclomatic, 0) / cRows.length).toFixed(1),
+                maxCognitive: Math.max(...cRows.map((r) => r.cognitive)),
+                maxCyclomatic: Math.max(...cRows.map((r) => r.cyclomatic)),
+                avgMI: +(miValues.reduce((s, v) => s + v, 0) / miValues.length).toFixed(1),
+                minMI: +Math.min(...miValues).toFixed(1),
+            };
+        }
+    }
+    catch (e) {
+        debug(`complexity summary skipped: ${e.message}`);
+    }
+    return null;
+}
+// ---------------------------------------------------------------------------
+// Public API
+// ---------------------------------------------------------------------------
+export function moduleMapData(customDbPath, limit = 20, opts = {}) {
+    const db = openReadonlyOrFail(customDbPath);
+    try {
+        const noTests = opts.noTests || false;
+        const testFilter = testFilterSQL('n.file', noTests);
+        const nodes = db
+            .prepare(`
+      SELECT n.file,
+        COALESCE(fo.cnt, 0) as out_edges,
+        COALESCE(fi.cnt, 0) as in_edges
+      FROM nodes n
+      LEFT JOIN (
+        SELECT source_id, COUNT(*) AS cnt FROM edges
+        WHERE kind NOT IN ('contains', 'parameter_of', 'receiver')
+        GROUP BY source_id
+      ) fo ON fo.source_id = n.id
+      LEFT JOIN (
+        SELECT target_id, COUNT(*) AS cnt FROM edges
+        WHERE kind NOT IN ('contains', 'parameter_of', 'receiver')
+        GROUP BY target_id
+      ) fi ON fi.target_id = n.id
+      WHERE n.kind = 'file'
+        ${testFilter}
+      ORDER BY COALESCE(fi.cnt, 0) DESC
+      LIMIT ?
+    `)
+            .all(limit);
+        const topNodes = nodes.map((n) => ({
+            file: n.file,
+            dir: path.dirname(n.file) || '.',
+            inEdges: n.in_edges,
+            outEdges: n.out_edges,
+            coupling: n.in_edges + n.out_edges,
+        }));
+        const totalNodes = db.prepare('SELECT COUNT(*) as c FROM nodes').get()?.c ?? 0;
+        const totalEdges = db.prepare('SELECT COUNT(*) as c FROM edges').get()?.c ?? 0;
+        const totalFiles = db.prepare("SELECT COUNT(*) as c FROM nodes WHERE kind = 'file'").get()?.c ?? 0;
+        return { limit, topNodes, stats: { totalFiles, totalNodes, totalEdges } };
+    }
+    finally {
+        db.close();
+    }
+}
+/** SQL query for false-positive caller counts above a threshold (shared by native and JS paths). */
+function queryFalsePositiveRows(db, fpThreshold) {
+    return db
+        .prepare(`
+      SELECT n.name, n.file, n.line, COUNT(e.source_id) as caller_count
+      FROM nodes n
+      LEFT JOIN edges e ON n.id = e.target_id AND e.kind = 'calls'
+      WHERE n.kind IN ('function', 'method')
+      GROUP BY n.id
+      HAVING caller_count > ?
+      ORDER BY caller_count DESC
+    `)
+        .all(fpThreshold);
+}
+/**
+ * Returns true when a high-caller-count row is a known structural false positive
+ * that should be silently excluded from warnings.
+ *
+ * Rust `::new()` methods (kind = method, local name = "new", file ends in ".rs")
+ * are conventional constructors — their high call counts are expected and carry
+ * no architectural signal.  Any pattern-based exclusion should be added here
+ * rather than hardcoding specific symbol names.
+ */
+function isStructuralFalsePositive(r) {
+    const localName = r.name.includes('.') ? r.name.split('.').pop() : r.name;
+    // Rust ::new() constructors are always high-caller by design.
+    if (localName === 'new' && r.file.endsWith('.rs'))
+        return true;
+    return false;
+}
+/** Filter false-positive rows by the configured name set and shape them for the report. */
+function buildFalsePositiveWarnings(rows) {
+    return rows
+        .filter((r) => !isStructuralFalsePositive(r) &&
+        FALSE_POSITIVE_NAMES.has(r.name.includes('.') ? r.name.split('.').pop() : r.name))
+        .map((r) => ({ name: r.name, file: r.file, line: r.line, callerCount: r.caller_count }));
+}
+/** Compute the composite quality score (0-100) from coverage, confidence, and FP ratio. */
+function computeQualityScore(callerCoverage, callConfidence, falsePositiveRatio) {
+    return Math.round(callerCoverage * 40 + callConfidence * 40 + (1 - falsePositiveRatio) * 20);
+}
+/** Aggregate role counts and derive the `dead` total. */
+function aggregateRolesFromNative(roleCounts) {
+    const roles = {};
+    let deadTotal = 0;
+    for (const r of roleCounts) {
+        roles[r.role] = r.count;
+        if (r.role.startsWith(DEAD_ROLE_PREFIX))
+            deadTotal += r.count;
+    }
+    if (deadTotal > 0)
+        roles.dead = deadTotal;
+    return roles;
+}
+/** Build the native fast-path stats result by combining native aggregations with JS-only sections. */
+function buildStatsFromNative(db, nativeStats, config, noTests, jsSections) {
+    const s = nativeStats;
+    const nodesByKind = {};
+    for (const k of s.nodesByKind)
+        nodesByKind[k.kind] = k.count;
+    const edgesByKind = {};
+    for (const k of s.edgesByKind)
+        edgesByKind[k.kind] = k.count;
+    const roles = aggregateRolesFromNative(s.roleCounts);
+    const callerCoverage = s.quality.callableTotal > 0 ? s.quality.callableWithCallers / s.quality.callableTotal : 0;
+    // s.quality.callEdges is now the resolved (confidence>0) edge count — sink
+    // edges (confidence=0.0) are excluded so they don't dilute the ratio.
+    const callConfidence = s.quality.callEdges > 0 ? s.quality.highConfCallEdges / s.quality.callEdges : 0;
+    // False-positive analysis still uses JS (needs FALSE_POSITIVE_NAMES set).
+    // FP ratio uses the total calls count as denominator. When edgesByKind['calls']
+    // is undefined there are no call edges at all, so fpEdgeCount is 0 and the
+    // > 0 guard below returns 0 regardless — use 0 as the safe fallback.
+    const totalCallEdgesForFp = edgesByKind.calls ?? 0;
+    const fpThreshold = config.analysis?.falsePositiveCallers ?? FALSE_POSITIVE_CALLER_THRESHOLD;
+    const falsePositiveWarnings = buildFalsePositiveWarnings(queryFalsePositiveRows(db, fpThreshold));
+    let fpEdgeCount = 0;
+    for (const fp of falsePositiveWarnings)
+        fpEdgeCount += fp.callerCount;
+    const falsePositiveRatio = totalCallEdgesForFp > 0 ? fpEdgeCount / totalCallEdgesForFp : 0;
+    const score = computeQualityScore(callerCoverage, callConfidence, falsePositiveRatio);
+    const testFilter = testFilterSQL('n.file', noTests);
+    const byTechnique = countCallEdgesByTechnique(db, testFilter);
+    return {
+        nodes: { total: s.totalNodes, byKind: nodesByKind },
+        edges: { total: s.totalEdges, byKind: edgesByKind },
+        files: jsSections.files,
+        cycles: { fileLevel: jsSections.fileCycles.length, functionLevel: jsSections.fnCycles.length },
+        hotspots: s.hotspots.map((h) => ({ file: h.file, fanIn: h.fanIn, fanOut: h.fanOut })),
+        embeddings: s.embeddings
+            ? {
+                count: s.embeddings.count,
+                model: s.embeddings.model,
+                dim: s.embeddings.dim,
+                builtAt: s.embeddings.builtAt,
+            }
+            : null,
+        quality: {
+            score,
+            callerCoverage: {
+                ratio: callerCoverage,
+                percentage: Math.round(callerCoverage * 100),
+                covered: s.quality.callableWithCallers,
+                total: s.quality.callableTotal,
+                byTechnique: Object.keys(byTechnique).length > 0 ? byTechnique : undefined,
+            },
+            callConfidence: {
+                ratio: callConfidence,
+                highConf: s.quality.highConfCallEdges,
+                total: s.quality.callEdges,
+            },
+            falsePositiveWarnings,
+        },
+        roles,
+        complexity: s.complexity
+            ? {
+                analyzed: s.complexity.analyzed,
+                avgCognitive: s.complexity.avgCognitive,
+                avgCyclomatic: s.complexity.avgCyclomatic,
+                maxCognitive: s.complexity.maxCognitive,
+                maxCyclomatic: s.complexity.maxCyclomatic,
+                avgMI: s.complexity.avgMi,
+                minMI: s.complexity.minMi,
+            }
+            : null,
+    };
+}
+/** Build the JS-fallback stats result using SQL aggregations from the helpers above. */
+function buildStatsFromJs(db, noTests, config, jsSections) {
+    const testFilter = testFilterSQL('n.file', noTests);
+    const { total: totalNodes, byKind: nodesByKind } = countNodesByKind(db, noTests);
+    const { total: totalEdges, byKind: edgesByKind } = countEdgesByKind(db, noTests);
+    const hotspots = findHotspots(db, noTests, 5);
+    const embeddings = getEmbeddingsInfo(db);
+    const fpThreshold = config.analysis?.falsePositiveCallers ?? FALSE_POSITIVE_CALLER_THRESHOLD;
+    const quality = computeQualityMetrics(db, testFilter, fpThreshold);
+    const roles = countRoles(db, noTests);
+    const complexity = getComplexitySummary(db, testFilter);
+    return {
+        nodes: { total: totalNodes, byKind: nodesByKind },
+        edges: { total: totalEdges, byKind: edgesByKind },
+        files: jsSections.files,
+        cycles: { fileLevel: jsSections.fileCycles.length, functionLevel: jsSections.fnCycles.length },
+        hotspots,
+        embeddings,
+        quality,
+        roles,
+        complexity,
+    };
+}
+export function statsData(customDbPath, opts = {}) {
+    const { db, nativeDb, close } = openReadonlyWithNative(customDbPath);
+    try {
+        const noTests = opts.noTests || false;
+        const config = opts.config || loadConfig();
+        // These always need JS (non-SQL logic)
+        const jsSections = {
+            files: countFilesByLanguage(db, noTests),
+            fileCycles: findCycles(db, { fileLevel: true, noTests }),
+            fnCycles: findCycles(db, { fileLevel: false, noTests }),
+        };
+        const nativeStats = nativeDb?.getGraphStats?.(noTests);
+        return nativeStats
+            ? buildStatsFromNative(db, nativeStats, config, noTests, jsSections)
+            : buildStatsFromJs(db, noTests, config, jsSections);
+    }
+    finally {
+        close();
+    }
+}
+//# sourceMappingURL=module-map.js.map

package/dist/domain/analysis/module-map.js.map

@@ -0,0 +1 @@
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package/dist/domain/analysis/query-helpers.d.ts

@@ -0,0 +1,27 @@
+import { type Repository } from '../../db/index.js';
+import type { BetterSqlite3Database, CodegraphConfig } from '../../types.js';
+/**
+ * Open a readonly DB connection, run `fn`, and close the DB on completion.
+ * Eliminates the duplicated `openReadonlyOrFail` + `try/finally/db.close()` pattern
+ * that appears in every analysis query function.
+ */
+export declare function withReadonlyDb<T>(customDbPath: string | undefined, fn: (db: BetterSqlite3Database) => T): T;
+/**
+ * Open a Repository (native-first, falling back to better-sqlite3), run `fn`,
+ * and close on completion. Mirrors `withReadonlyDb` but routes queries through
+ * the native Rust engine when available.
+ */
+export declare function withRepo<T>(customDbPath: string | undefined, fn: (repo: InstanceType<typeof Repository>) => T): T;
+/**
+ * Resolve common analysis options into a normalized form.
+ * Shared across fn-impact, context, dependencies, and exports modules.
+ */
+export declare function resolveAnalysisOpts(opts: {
+    noTests?: boolean;
+    config?: CodegraphConfig;
+}): {
+    noTests: boolean;
+    config: CodegraphConfig;
+    displayOpts: Record<string, unknown>;
+};
+//# sourceMappingURL=query-helpers.d.ts.map

package/dist/domain/analysis/query-helpers.d.ts.map

@@ -0,0 +1 @@
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package/dist/domain/analysis/query-helpers.js

@@ -0,0 +1,41 @@
+import { openReadonlyOrFail, openRepo } from '../../db/index.js';
+import { loadConfig } from '../../infrastructure/config.js';
+/**
+ * Open a readonly DB connection, run `fn`, and close the DB on completion.
+ * Eliminates the duplicated `openReadonlyOrFail` + `try/finally/db.close()` pattern
+ * that appears in every analysis query function.
+ */
+export function withReadonlyDb(customDbPath, fn) {
+    const db = openReadonlyOrFail(customDbPath);
+    try {
+        return fn(db);
+    }
+    finally {
+        db.close();
+    }
+}
+/**
+ * Open a Repository (native-first, falling back to better-sqlite3), run `fn`,
+ * and close on completion. Mirrors `withReadonlyDb` but routes queries through
+ * the native Rust engine when available.
+ */
+export function withRepo(customDbPath, fn) {
+    const { repo, close } = openRepo(customDbPath);
+    try {
+        return fn(repo);
+    }
+    finally {
+        close();
+    }
+}
+/**
+ * Resolve common analysis options into a normalized form.
+ * Shared across fn-impact, context, dependencies, and exports modules.
+ */
+export function resolveAnalysisOpts(opts) {
+    const noTests = opts.noTests || false;
+    const config = opts.config || loadConfig();
+    const displayOpts = config.display || {};
+    return { noTests, config, displayOpts };
+}
+//# sourceMappingURL=query-helpers.js.map

package/dist/domain/analysis/query-helpers.js.map

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package/dist/domain/analysis/roles.d.ts

@@ -0,0 +1,20 @@
+export interface DynamicCallCount {
+    dynamic_kind: string;
+    count: number;
+}
+/** Return a count of flagged dynamic call sink edges, grouped by kind. */
+export declare function dynamicCallsData(customDbPath: string): DynamicCallCount[];
+export declare function rolesData(customDbPath: string, opts?: {
+    noTests?: boolean;
+    role?: string | null;
+    file?: string;
+    limit?: number;
+    offset?: number;
+}): {
+    count: number;
+    summary: Record<string, number>;
+    symbols: import("../../shared/normalize.js").NormalizedSymbol[];
+} & {
+    _pagination?: import("../../types.js").PaginationMeta;
+};
+//# sourceMappingURL=roles.d.ts.map

package/dist/domain/analysis/roles.d.ts.map

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