okstra 0.114.0 → 0.115.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (326) hide show
  1. package/docs/kr/architecture.md +2 -2
  2. package/docs/kr/follow-ups/2026-07-10-final-report-option-3.md +51 -0
  3. package/package.json +1 -1
  4. package/runtime/BUILD.json +2 -2
  5. package/runtime/agents/workers/report-writer-worker.md +1 -0
  6. package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
  7. package/runtime/python/okstra_ctl/implementation_stage.py +46 -39
  8. package/runtime/python/okstra_ctl/report_views.py +151 -12
  9. package/runtime/python/okstra_ctl/run.py +24 -24
  10. package/runtime/python/okstra_ctl/worktree.py +1 -1
  11. package/runtime/python/okstra_token_usage/claude.py +58 -19
  12. package/runtime/python/okstra_token_usage/collect.py +3 -1
  13. package/runtime/python/okstra_vendor/__init__.py +3 -0
  14. package/runtime/schemas/final-report-v1.0.schema.json +20 -0
  15. package/runtime/templates/reports/final-report.template.md +14 -0
  16. package/runtime/templates/reports/i18n/en.json +23 -12
  17. package/runtime/templates/reports/i18n/ko.json +23 -12
  18. package/runtime/templates/reports/report.css +55 -0
  19. package/runtime/templates/reports/report.js +53 -1
  20. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  21. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +0 -41
  22. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +0 -112
  23. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +0 -199
  24. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +0 -146
  25. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +0 -59
  26. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +0 -78
  27. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +0 -303
  28. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +0 -8
  29. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +0 -94
  30. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +0 -31
  31. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +0 -306
  32. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +0 -1014
  33. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +0 -274
  34. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +0 -68
  35. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  36. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +0 -81
  37. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +0 -143
  38. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +0 -122
  39. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +0 -174
  40. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +0 -107
  41. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +0 -87
  42. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  43. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +0 -125
  44. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +0 -192
  45. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +0 -84
  46. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +0 -33
  47. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +0 -240
  48. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +0 -334
  49. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +0 -407
  50. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +0 -218
  51. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +0 -327
  52. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +0 -138
  53. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +0 -409
  54. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +0 -35
  55. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +0 -80
  56. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +0 -923
  58. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +0 -354
  59. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +0 -274
  60. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +0 -259
  61. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +0 -147
  62. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +0 -43
  63. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +0 -144
  64. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +0 -73
  65. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +0 -186
  66. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +0 -277
  67. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +0 -122
  68. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +0 -345
  69. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +0 -220
  70. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +0 -344
  71. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +0 -87
  72. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +0 -140
  73. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +0 -82
  74. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +0 -110
  75. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +0 -302
  76. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +0 -64
  77. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +0 -863
  79. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +0 -147
  81. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +0 -157
  82. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +0 -85
  83. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +0 -106
  84. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +0 -91
  85. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +0 -241
  86. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +0 -138
  87. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +0 -76
  88. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +0 -264
  89. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +0 -152
  90. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +0 -340
  91. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +0 -139
  92. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +0 -26
  93. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +0 -70
  95. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +0 -248
  96. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +0 -138
  97. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +0 -55
  98. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +0 -193
  99. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +0 -96
  100. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +0 -421
  102. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +0 -309
  103. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +0 -249
  104. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +0 -502
  105. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +0 -488
  106. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +0 -323
  107. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +0 -280
  108. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +0 -102
  109. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/__init__.py +0 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gl1.gpickle.bz2 +0 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gw1.gpickle.bz2 +0 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/netgen-2.gpickle.bz2 +0 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_gomory_hu.py +0 -128
  114. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow.py +0 -573
  115. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow_large_graph.py +0 -155
  116. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_mincost.py +0 -475
  117. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_networksimplex.py +0 -481
  118. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/wlm3.gpickle.bz2 +0 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/__init__.py +0 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.A99 +0 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.B99 +0 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.A99 +0 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.B99 +0 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_ismags.py +0 -719
  125. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphism.py +0 -103
  126. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphvf2.py +0 -490
  127. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_match_helpers.py +0 -64
  128. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_temporalisomorphvf2.py +0 -212
  129. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_tree_isomorphism.py +0 -202
  130. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp.py +0 -1655
  131. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp_helpers.py +0 -3118
  132. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2userfunc.py +0 -196
  133. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/__init__.py +0 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_hits.py +0 -77
  135. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_pagerank.py +0 -213
  136. package/runtime/python/okstra_vendor/networkx/algorithms/minors/tests/test_contraction.py +0 -544
  137. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/__init__.py +0 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_all.py +0 -328
  139. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_binary.py +0 -451
  140. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_product.py +0 -491
  141. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_unary.py +0 -55
  142. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/__init__.py +0 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_astar.py +0 -254
  144. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense.py +0 -212
  145. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense_numpy.py +0 -88
  146. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_generic.py +0 -511
  147. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_unweighted.py +0 -149
  148. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_weighted.py +0 -983
  149. package/runtime/python/okstra_vendor/networkx/algorithms/tests/__init__.py +0 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_asteroidal.py +0 -23
  151. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_boundary.py +0 -154
  152. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_bridges.py +0 -144
  153. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_broadcasting.py +0 -109
  154. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chains.py +0 -136
  155. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chordal.py +0 -129
  156. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_clique.py +0 -300
  157. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cluster.py +0 -678
  158. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_communicability.py +0 -80
  159. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_core.py +0 -266
  160. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_covering.py +0 -85
  161. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cuts.py +0 -171
  162. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cycles.py +0 -984
  163. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_d_separation.py +0 -340
  164. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dag.py +0 -835
  165. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_measures.py +0 -831
  166. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_regular.py +0 -85
  167. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominance.py +0 -299
  168. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominating.py +0 -115
  169. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_efficiency.py +0 -58
  170. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_euler.py +0 -314
  171. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graph_hashing.py +0 -872
  172. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graphical.py +0 -163
  173. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hierarchy.py +0 -46
  174. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hybrid.py +0 -24
  175. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_isolate.py +0 -26
  176. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_link_prediction.py +0 -615
  177. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_lowest_common_ancestors.py +0 -459
  178. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_matching.py +0 -556
  179. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_max_weight_clique.py +0 -179
  180. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_mis.py +0 -62
  181. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_moral.py +0 -15
  182. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_node_classification.py +0 -140
  183. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_non_randomness.py +0 -60
  184. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_perfect_graph.py +0 -27
  185. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planar_drawing.py +0 -274
  186. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planarity.py +0 -556
  187. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_polynomials.py +0 -57
  188. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_reciprocity.py +0 -37
  189. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_regular.py +0 -88
  190. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_richclub.py +0 -149
  191. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_similarity.py +0 -1158
  192. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_simple_paths.py +0 -803
  193. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smallworld.py +0 -76
  194. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smetric.py +0 -8
  195. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_sparsifiers.py +0 -138
  196. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_structuralholes.py +0 -191
  197. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_summarization.py +0 -642
  198. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_swap.py +0 -179
  199. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_threshold.py +0 -270
  200. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_time_dependent.py +0 -431
  201. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_tournament.py +0 -161
  202. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_triads.py +0 -248
  203. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_vitality.py +0 -41
  204. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_voronoi.py +0 -103
  205. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_walks.py +0 -54
  206. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_wiener.py +0 -157
  207. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/__init__.py +0 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_beamsearch.py +0 -25
  209. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_bfs.py +0 -203
  210. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_dfs.py +0 -307
  211. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgebfs.py +0 -147
  212. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgedfs.py +0 -131
  213. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/__init__.py +0 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_branchings.py +0 -624
  215. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_coding.py +0 -114
  216. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_decomposition.py +0 -79
  217. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_distance_measures.py +0 -99
  218. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_mst.py +0 -934
  219. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_operations.py +0 -53
  220. package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_recognition.py +0 -174
  221. package/runtime/python/okstra_vendor/networkx/classes/tests/__init__.py +0 -0
  222. package/runtime/python/okstra_vendor/networkx/classes/tests/dispatch_interface.py +0 -192
  223. package/runtime/python/okstra_vendor/networkx/classes/tests/historical_tests.py +0 -476
  224. package/runtime/python/okstra_vendor/networkx/classes/tests/test_coreviews.py +0 -362
  225. package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph.py +0 -331
  226. package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph_historical.py +0 -110
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@@ -1,934 +0,0 @@
1
- """Unit tests for the :mod:`networkx.algorithms.tree.mst` module."""
2
-
3
- import pytest
4
-
5
- import networkx as nx
6
- from networkx.utils import edges_equal, nodes_equal
7
-
8
-
9
- def test_unknown_algorithm():
10
- with pytest.raises(ValueError):
11
- nx.minimum_spanning_tree(nx.Graph(), algorithm="random")
12
- with pytest.raises(
13
- ValueError, match="random is not a valid choice for an algorithm."
14
- ):
15
- nx.maximum_spanning_edges(nx.Graph(), algorithm="random")
16
-
17
-
18
- class MinimumSpanningTreeTestBase:
19
- """Base class for test classes for minimum spanning tree algorithms.
20
- This class contains some common tests that will be inherited by
21
- subclasses. Each subclass must have a class attribute
22
- :data:`algorithm` that is a string representing the algorithm to
23
- run, as described under the ``algorithm`` keyword argument for the
24
- :func:`networkx.minimum_spanning_edges` function. Subclasses can
25
- then implement any algorithm-specific tests.
26
- """
27
-
28
- def setup_method(self, method):
29
- """Creates an example graph and stores the expected minimum and
30
- maximum spanning tree edges.
31
- """
32
- # This stores the class attribute `algorithm` in an instance attribute.
33
- self.algo = self.algorithm
34
- # This example graph comes from Wikipedia:
35
- # https://en.wikipedia.org/wiki/Kruskal's_algorithm
36
- edges = [
37
- (0, 1, 7),
38
- (0, 3, 5),
39
- (1, 2, 8),
40
- (1, 3, 9),
41
- (1, 4, 7),
42
- (2, 4, 5),
43
- (3, 4, 15),
44
- (3, 5, 6),
45
- (4, 5, 8),
46
- (4, 6, 9),
47
- (5, 6, 11),
48
- ]
49
- self.G = nx.Graph()
50
- self.G.add_weighted_edges_from(edges)
51
- self.minimum_spanning_edgelist = [
52
- (0, 1, {"weight": 7}),
53
- (0, 3, {"weight": 5}),
54
- (1, 4, {"weight": 7}),
55
- (2, 4, {"weight": 5}),
56
- (3, 5, {"weight": 6}),
57
- (4, 6, {"weight": 9}),
58
- ]
59
- self.maximum_spanning_edgelist = [
60
- (0, 1, {"weight": 7}),
61
- (1, 2, {"weight": 8}),
62
- (1, 3, {"weight": 9}),
63
- (3, 4, {"weight": 15}),
64
- (4, 6, {"weight": 9}),
65
- (5, 6, {"weight": 11}),
66
- ]
67
-
68
- def test_minimum_edges(self):
69
- edges = nx.minimum_spanning_edges(self.G, algorithm=self.algo)
70
- # Edges from the spanning edges functions don't come in sorted
71
- # orientation, so we need to sort each edge individually.
72
- actual = sorted((min(u, v), max(u, v), d) for u, v, d in edges)
73
- assert edges_equal(actual, self.minimum_spanning_edgelist)
74
-
75
- def test_maximum_edges(self):
76
- edges = nx.maximum_spanning_edges(self.G, algorithm=self.algo)
77
- # Edges from the spanning edges functions don't come in sorted
78
- # orientation, so we need to sort each edge individually.
79
- actual = sorted((min(u, v), max(u, v), d) for u, v, d in edges)
80
- assert edges_equal(actual, self.maximum_spanning_edgelist)
81
-
82
- def test_without_data(self):
83
- edges = nx.minimum_spanning_edges(self.G, algorithm=self.algo, data=False)
84
- # Edges from the spanning edges functions don't come in sorted
85
- # orientation, so we need to sort each edge individually.
86
- actual = sorted((min(u, v), max(u, v)) for u, v in edges)
87
- expected = [(u, v) for u, v, d in self.minimum_spanning_edgelist]
88
- assert edges_equal(actual, expected)
89
-
90
- def test_nan_weights(self):
91
- # Edge weights NaN never appear in the spanning tree. see #2164
92
- G = self.G
93
- G.add_edge(0, 12, weight=float("nan"))
94
- edges = nx.minimum_spanning_edges(
95
- G, algorithm=self.algo, data=False, ignore_nan=True
96
- )
97
- actual = sorted((min(u, v), max(u, v)) for u, v in edges)
98
- expected = [(u, v) for u, v, d in self.minimum_spanning_edgelist]
99
- assert edges_equal(actual, expected)
100
- # Now test for raising exception
101
- edges = nx.minimum_spanning_edges(
102
- G, algorithm=self.algo, data=False, ignore_nan=False
103
- )
104
- with pytest.raises(ValueError):
105
- list(edges)
106
- # test default for ignore_nan as False
107
- edges = nx.minimum_spanning_edges(G, algorithm=self.algo, data=False)
108
- with pytest.raises(ValueError):
109
- list(edges)
110
-
111
- def test_nan_weights_MultiGraph(self):
112
- G = nx.MultiGraph()
113
- G.add_edge(0, 12, weight=float("nan"))
114
- edges = nx.minimum_spanning_edges(
115
- G, algorithm="prim", data=False, ignore_nan=False
116
- )
117
- with pytest.raises(ValueError):
118
- list(edges)
119
- # test default for ignore_nan as False
120
- edges = nx.minimum_spanning_edges(G, algorithm="prim", data=False)
121
- with pytest.raises(ValueError):
122
- list(edges)
123
-
124
- def test_nan_weights_order(self):
125
- # now try again with a nan edge at the beginning of G.nodes
126
- edges = [
127
- (0, 1, 7),
128
- (0, 3, 5),
129
- (1, 2, 8),
130
- (1, 3, 9),
131
- (1, 4, 7),
132
- (2, 4, 5),
133
- (3, 4, 15),
134
- (3, 5, 6),
135
- (4, 5, 8),
136
- (4, 6, 9),
137
- (5, 6, 11),
138
- ]
139
- G = nx.Graph()
140
- G.add_weighted_edges_from([(u + 1, v + 1, wt) for u, v, wt in edges])
141
- G.add_edge(0, 7, weight=float("nan"))
142
- edges = nx.minimum_spanning_edges(
143
- G, algorithm=self.algo, data=False, ignore_nan=True
144
- )
145
- actual = sorted((min(u, v), max(u, v)) for u, v in edges)
146
- shift = [(u + 1, v + 1) for u, v, d in self.minimum_spanning_edgelist]
147
- assert edges_equal(actual, shift)
148
-
149
- def test_isolated_node(self):
150
- # now try again with an isolated node
151
- edges = [
152
- (0, 1, 7),
153
- (0, 3, 5),
154
- (1, 2, 8),
155
- (1, 3, 9),
156
- (1, 4, 7),
157
- (2, 4, 5),
158
- (3, 4, 15),
159
- (3, 5, 6),
160
- (4, 5, 8),
161
- (4, 6, 9),
162
- (5, 6, 11),
163
- ]
164
- G = nx.Graph()
165
- G.add_weighted_edges_from([(u + 1, v + 1, wt) for u, v, wt in edges])
166
- G.add_node(0)
167
- edges = nx.minimum_spanning_edges(
168
- G, algorithm=self.algo, data=False, ignore_nan=True
169
- )
170
- actual = sorted((min(u, v), max(u, v)) for u, v in edges)
171
- shift = [(u + 1, v + 1) for u, v, d in self.minimum_spanning_edgelist]
172
- assert edges_equal(actual, shift)
173
-
174
- def test_minimum_tree(self):
175
- T = nx.minimum_spanning_tree(self.G, algorithm=self.algo)
176
- actual = sorted(T.edges(data=True))
177
- assert edges_equal(actual, self.minimum_spanning_edgelist)
178
-
179
- def test_maximum_tree(self):
180
- T = nx.maximum_spanning_tree(self.G, algorithm=self.algo)
181
- actual = sorted(T.edges(data=True))
182
- assert edges_equal(actual, self.maximum_spanning_edgelist)
183
-
184
- def test_disconnected(self):
185
- G = nx.Graph([(0, 1, {"weight": 1}), (2, 3, {"weight": 2})])
186
- T = nx.minimum_spanning_tree(G, algorithm=self.algo)
187
- assert nodes_equal(list(T), list(range(4)))
188
- assert edges_equal(list(T.edges()), [(0, 1), (2, 3)])
189
-
190
- def test_empty_graph(self):
191
- G = nx.empty_graph(3)
192
- T = nx.minimum_spanning_tree(G, algorithm=self.algo)
193
- assert nodes_equal(sorted(T), list(range(3)))
194
- assert T.number_of_edges() == 0
195
-
196
- def test_attributes(self):
197
- G = nx.Graph()
198
- G.add_edge(1, 2, weight=1, color="red", distance=7)
199
- G.add_edge(2, 3, weight=1, color="green", distance=2)
200
- G.add_edge(1, 3, weight=10, color="blue", distance=1)
201
- G.graph["foo"] = "bar"
202
- T = nx.minimum_spanning_tree(G, algorithm=self.algo)
203
- assert T.graph == G.graph
204
- assert nodes_equal(T, G)
205
- for u, v in T.edges():
206
- assert T.adj[u][v] == G.adj[u][v]
207
-
208
- def test_weight_attribute(self):
209
- G = nx.Graph()
210
- G.add_edge(0, 1, weight=1, distance=7)
211
- G.add_edge(0, 2, weight=30, distance=1)
212
- G.add_edge(1, 2, weight=1, distance=1)
213
- G.add_node(3)
214
- T = nx.minimum_spanning_tree(G, algorithm=self.algo, weight="distance")
215
- assert nodes_equal(sorted(T), list(range(4)))
216
- assert edges_equal(sorted(T.edges()), [(0, 2), (1, 2)])
217
- T = nx.maximum_spanning_tree(G, algorithm=self.algo, weight="distance")
218
- assert nodes_equal(sorted(T), list(range(4)))
219
- assert edges_equal(sorted(T.edges()), [(0, 1), (0, 2)])
220
-
221
- def test_minimum_spanning_edges_directed_raises(self):
222
- DG = nx.DiGraph()
223
- DG.add_edge(0, 1, weight=1)
224
- with pytest.raises(nx.NetworkXNotImplemented):
225
- list(nx.minimum_spanning_edges(DG, algorithm=self.algo))
226
- with pytest.raises(nx.NetworkXNotImplemented):
227
- list(nx.maximum_spanning_edges(DG, algorithm=self.algo))
228
-
229
-
230
- class TestBoruvka(MinimumSpanningTreeTestBase):
231
- """Unit tests for computing a minimum (or maximum) spanning tree
232
- using Borůvka's algorithm.
233
- """
234
-
235
- algorithm = "boruvka"
236
-
237
- def test_unicode_name(self):
238
- """Tests that using a Unicode string can correctly indicate
239
- Borůvka's algorithm.
240
- """
241
- edges = nx.minimum_spanning_edges(self.G, algorithm="borůvka")
242
- # Edges from the spanning edges functions don't come in sorted
243
- # orientation, so we need to sort each edge individually.
244
- actual = sorted((min(u, v), max(u, v), d) for u, v, d in edges)
245
- assert edges_equal(actual, self.minimum_spanning_edgelist)
246
-
247
- def test_minimum_spanning_edges_multigraph_raises(self):
248
- MG = nx.MultiGraph()
249
- MG.add_edge(0, 1, weight=1)
250
- with pytest.raises(nx.NetworkXNotImplemented):
251
- list(nx.minimum_spanning_edges(MG, algorithm=self.algo))
252
- with pytest.raises(nx.NetworkXNotImplemented):
253
- list(nx.maximum_spanning_edges(MG, algorithm=self.algo))
254
-
255
-
256
- class MultigraphMSTTestBase(MinimumSpanningTreeTestBase):
257
- # Abstract class
258
-
259
- def test_multigraph_keys_min(self):
260
- """Tests that the minimum spanning edges of a multigraph
261
- preserves edge keys.
262
- """
263
- G = nx.MultiGraph()
264
- G.add_edge(0, 1, key="a", weight=2)
265
- G.add_edge(0, 1, key="b", weight=1)
266
- min_edges = nx.minimum_spanning_edges
267
- mst_edges = min_edges(G, algorithm=self.algo, data=False)
268
- assert edges_equal([(0, 1, "b")], list(mst_edges))
269
-
270
- def test_multigraph_keys_max(self):
271
- """Tests that the maximum spanning edges of a multigraph
272
- preserves edge keys.
273
- """
274
- G = nx.MultiGraph()
275
- G.add_edge(0, 1, key="a", weight=2)
276
- G.add_edge(0, 1, key="b", weight=1)
277
- max_edges = nx.maximum_spanning_edges
278
- mst_edges = max_edges(G, algorithm=self.algo, data=False)
279
- assert edges_equal([(0, 1, "a")], list(mst_edges))
280
-
281
-
282
- class TestKruskal(MultigraphMSTTestBase):
283
- """Unit tests for computing a minimum (or maximum) spanning tree
284
- using Kruskal's algorithm.
285
- """
286
-
287
- algorithm = "kruskal"
288
-
289
- def test_key_data_bool(self):
290
- """Tests that the keys and data values are included in
291
- MST edges based on whether keys and data parameters are
292
- true or false"""
293
- G = nx.MultiGraph()
294
- G.add_edge(1, 2, key=1, weight=2)
295
- G.add_edge(1, 2, key=2, weight=3)
296
- G.add_edge(3, 2, key=1, weight=2)
297
- G.add_edge(3, 1, key=1, weight=4)
298
-
299
- # keys are included and data is not included
300
- mst_edges = nx.minimum_spanning_edges(
301
- G, algorithm=self.algo, keys=True, data=False
302
- )
303
- assert edges_equal([(1, 2, 1), (2, 3, 1)], list(mst_edges))
304
-
305
- # keys are not included and data is included
306
- mst_edges = nx.minimum_spanning_edges(
307
- G, algorithm=self.algo, keys=False, data=True
308
- )
309
- assert edges_equal(
310
- [(1, 2, {"weight": 2}), (2, 3, {"weight": 2})], list(mst_edges)
311
- )
312
-
313
- # both keys and data are not included
314
- mst_edges = nx.minimum_spanning_edges(
315
- G, algorithm=self.algo, keys=False, data=False
316
- )
317
- assert edges_equal([(1, 2), (2, 3)], list(mst_edges))
318
-
319
- # both keys and data are included
320
- mst_edges = nx.minimum_spanning_edges(
321
- G, algorithm=self.algo, keys=True, data=True
322
- )
323
- assert edges_equal(
324
- [(1, 2, 1, {"weight": 2}), (2, 3, 1, {"weight": 2})], list(mst_edges)
325
- )
326
-
327
-
328
- class TestPrim(MultigraphMSTTestBase):
329
- """Unit tests for computing a minimum (or maximum) spanning tree
330
- using Prim's algorithm.
331
- """
332
-
333
- algorithm = "prim"
334
-
335
- def test_prim_mst_edges_simple_graph(self):
336
- H = nx.Graph()
337
- H.add_edge(1, 2, key=2, weight=3)
338
- H.add_edge(3, 2, key=1, weight=2)
339
- H.add_edge(3, 1, key=1, weight=4)
340
-
341
- mst_edges = nx.minimum_spanning_edges(H, algorithm=self.algo, ignore_nan=True)
342
- assert edges_equal(
343
- [(1, 2, {"key": 2, "weight": 3}), (2, 3, {"key": 1, "weight": 2})],
344
- list(mst_edges),
345
- )
346
-
347
- def test_ignore_nan(self):
348
- """Tests that the edges with NaN weights are ignored or
349
- raise an Error based on ignore_nan is true or false"""
350
- H = nx.MultiGraph()
351
- H.add_edge(1, 2, key=1, weight=float("nan"))
352
- H.add_edge(1, 2, key=2, weight=3)
353
- H.add_edge(3, 2, key=1, weight=2)
354
- H.add_edge(3, 1, key=1, weight=4)
355
-
356
- # NaN weight edges are ignored when ignore_nan=True
357
- mst_edges = nx.minimum_spanning_edges(H, algorithm=self.algo, ignore_nan=True)
358
- assert edges_equal(
359
- [(1, 2, 2, {"weight": 3}), (2, 3, 1, {"weight": 2})], list(mst_edges)
360
- )
361
-
362
- # NaN weight edges raise Error when ignore_nan=False
363
- with pytest.raises(ValueError):
364
- list(nx.minimum_spanning_edges(H, algorithm=self.algo, ignore_nan=False))
365
-
366
- def test_multigraph_keys_tree(self):
367
- G = nx.MultiGraph()
368
- G.add_edge(0, 1, key="a", weight=2)
369
- G.add_edge(0, 1, key="b", weight=1)
370
- T = nx.minimum_spanning_tree(G, algorithm=self.algo)
371
- assert edges_equal([(0, 1, 1)], list(T.edges(data="weight")))
372
-
373
- def test_multigraph_keys_tree_max(self):
374
- G = nx.MultiGraph()
375
- G.add_edge(0, 1, key="a", weight=2)
376
- G.add_edge(0, 1, key="b", weight=1)
377
- T = nx.maximum_spanning_tree(G, algorithm=self.algo)
378
- assert edges_equal([(0, 1, 2)], list(T.edges(data="weight")))
379
-
380
-
381
- class TestSpanningTreeIterator:
382
- """
383
- Tests the spanning tree iterator on the example graph in the 2005 Sörensen
384
- and Janssens paper An Algorithm to Generate all Spanning Trees of a Graph in
385
- Order of Increasing Cost
386
- """
387
-
388
- def setup_method(self):
389
- # Original Graph
390
- edges = [(0, 1, 5), (1, 2, 4), (1, 4, 6), (2, 3, 5), (2, 4, 7), (3, 4, 3)]
391
- self.G = nx.Graph()
392
- self.G.add_weighted_edges_from(edges)
393
- # List of lists of spanning trees in increasing order
394
- self.spanning_trees = [
395
- # 1, MST, cost = 17
396
- [
397
- (0, 1, {"weight": 5}),
398
- (1, 2, {"weight": 4}),
399
- (2, 3, {"weight": 5}),
400
- (3, 4, {"weight": 3}),
401
- ],
402
- # 2, cost = 18
403
- [
404
- (0, 1, {"weight": 5}),
405
- (1, 2, {"weight": 4}),
406
- (1, 4, {"weight": 6}),
407
- (3, 4, {"weight": 3}),
408
- ],
409
- # 3, cost = 19
410
- [
411
- (0, 1, {"weight": 5}),
412
- (1, 4, {"weight": 6}),
413
- (2, 3, {"weight": 5}),
414
- (3, 4, {"weight": 3}),
415
- ],
416
- # 4, cost = 19
417
- [
418
- (0, 1, {"weight": 5}),
419
- (1, 2, {"weight": 4}),
420
- (2, 4, {"weight": 7}),
421
- (3, 4, {"weight": 3}),
422
- ],
423
- # 5, cost = 20
424
- [
425
- (0, 1, {"weight": 5}),
426
- (1, 2, {"weight": 4}),
427
- (1, 4, {"weight": 6}),
428
- (2, 3, {"weight": 5}),
429
- ],
430
- # 6, cost = 21
431
- [
432
- (0, 1, {"weight": 5}),
433
- (1, 4, {"weight": 6}),
434
- (2, 4, {"weight": 7}),
435
- (3, 4, {"weight": 3}),
436
- ],
437
- # 7, cost = 21
438
- [
439
- (0, 1, {"weight": 5}),
440
- (1, 2, {"weight": 4}),
441
- (2, 3, {"weight": 5}),
442
- (2, 4, {"weight": 7}),
443
- ],
444
- # 8, cost = 23
445
- [
446
- (0, 1, {"weight": 5}),
447
- (1, 4, {"weight": 6}),
448
- (2, 3, {"weight": 5}),
449
- (2, 4, {"weight": 7}),
450
- ],
451
- ]
452
-
453
- def test_minimum_spanning_tree_iterator(self):
454
- """
455
- Tests that the spanning trees are correctly returned in increasing order
456
- """
457
- tree_index = 0
458
- for tree in nx.SpanningTreeIterator(self.G):
459
- actual = sorted(tree.edges(data=True))
460
- assert edges_equal(actual, self.spanning_trees[tree_index])
461
- tree_index += 1
462
-
463
- def test_maximum_spanning_tree_iterator(self):
464
- """
465
- Tests that the spanning trees are correctly returned in decreasing order
466
- """
467
- tree_index = 7
468
- for tree in nx.SpanningTreeIterator(self.G, minimum=False):
469
- actual = sorted(tree.edges(data=True))
470
- assert edges_equal(actual, self.spanning_trees[tree_index])
471
- tree_index -= 1
472
-
473
-
474
- class TestSpanningTreeMultiGraphIterator:
475
- """
476
- Uses the same graph as the above class but with an added edge of twice the weight.
477
- """
478
-
479
- def setup_method(self):
480
- # New graph
481
- edges = [
482
- (0, 1, 5),
483
- (0, 1, 10),
484
- (1, 2, 4),
485
- (1, 2, 8),
486
- (1, 4, 6),
487
- (1, 4, 12),
488
- (2, 3, 5),
489
- (2, 3, 10),
490
- (2, 4, 7),
491
- (2, 4, 14),
492
- (3, 4, 3),
493
- (3, 4, 6),
494
- ]
495
- self.G = nx.MultiGraph()
496
- self.G.add_weighted_edges_from(edges)
497
-
498
- # There are 128 trees. I'd rather not list all 128 here, and computing them
499
- # on such a small graph actually doesn't take that long.
500
- from itertools import combinations
501
-
502
- self.spanning_trees = []
503
- for e in combinations(self.G.edges, 4):
504
- tree = self.G.edge_subgraph(e)
505
- if nx.is_tree(tree):
506
- self.spanning_trees.append(sorted(tree.edges(keys=True, data=True)))
507
-
508
- def test_minimum_spanning_tree_iterator_multigraph(self):
509
- """
510
- Tests that the spanning trees are correctly returned in increasing order
511
- """
512
- tree_index = 0
513
- last_weight = 0
514
- for tree in nx.SpanningTreeIterator(self.G):
515
- actual = sorted(tree.edges(keys=True, data=True))
516
- weight = sum([e[3]["weight"] for e in actual])
517
- assert actual in self.spanning_trees
518
- assert weight >= last_weight
519
- tree_index += 1
520
-
521
- def test_maximum_spanning_tree_iterator_multigraph(self):
522
- """
523
- Tests that the spanning trees are correctly returned in decreasing order
524
- """
525
- tree_index = 127
526
- # Maximum weight tree is 46
527
- last_weight = 50
528
- for tree in nx.SpanningTreeIterator(self.G, minimum=False):
529
- actual = sorted(tree.edges(keys=True, data=True))
530
- weight = sum([e[3]["weight"] for e in actual])
531
- assert actual in self.spanning_trees
532
- assert weight <= last_weight
533
- tree_index -= 1
534
-
535
-
536
- def test_random_spanning_tree_multiplicative_small():
537
- """
538
- Using a fixed seed, sample one tree for repeatability.
539
- """
540
- from math import exp
541
-
542
- pytest.importorskip("scipy")
543
-
544
- gamma = {
545
- (0, 1): -0.6383,
546
- (0, 2): -0.6827,
547
- (0, 5): 0,
548
- (1, 2): -1.0781,
549
- (1, 4): 0,
550
- (2, 3): 0,
551
- (5, 3): -0.2820,
552
- (5, 4): -0.3327,
553
- (4, 3): -0.9927,
554
- }
555
-
556
- # The undirected support of gamma
557
- G = nx.Graph()
558
- for u, v in gamma:
559
- G.add_edge(u, v, lambda_key=exp(gamma[(u, v)]))
560
-
561
- solution_edges = [(2, 3), (3, 4), (0, 5), (5, 4), (4, 1)]
562
- solution = nx.Graph()
563
- solution.add_edges_from(solution_edges)
564
-
565
- sampled_tree = nx.random_spanning_tree(G, "lambda_key", seed=42)
566
-
567
- assert nx.utils.edges_equal(solution.edges, sampled_tree.edges)
568
-
569
-
570
- @pytest.mark.slow
571
- def test_random_spanning_tree_multiplicative_large():
572
- """
573
- Sample many trees from the distribution created in the last test
574
- """
575
- from math import exp
576
- from random import Random
577
-
578
- pytest.importorskip("numpy")
579
- stats = pytest.importorskip("scipy.stats")
580
-
581
- gamma = {
582
- (0, 1): -0.6383,
583
- (0, 2): -0.6827,
584
- (0, 5): 0,
585
- (1, 2): -1.0781,
586
- (1, 4): 0,
587
- (2, 3): 0,
588
- (5, 3): -0.2820,
589
- (5, 4): -0.3327,
590
- (4, 3): -0.9927,
591
- }
592
-
593
- # The undirected support of gamma
594
- G = nx.Graph()
595
- for u, v in gamma:
596
- G.add_edge(u, v, lambda_key=exp(gamma[(u, v)]))
597
-
598
- # Find the multiplicative weight for each tree.
599
- total_weight = 0
600
- tree_expected = {}
601
- for t in nx.SpanningTreeIterator(G):
602
- # Find the multiplicative weight of the spanning tree
603
- weight = 1
604
- for u, v, d in t.edges(data="lambda_key"):
605
- weight *= d
606
- tree_expected[t] = weight
607
- total_weight += weight
608
-
609
- # Assert that every tree has an entry in the expected distribution
610
- assert len(tree_expected) == 75
611
-
612
- # Set the sample size and then calculate the expected number of times we
613
- # expect to see each tree. This test uses a near minimum sample size where
614
- # the most unlikely tree has an expected frequency of 5.15.
615
- # (Minimum required is 5)
616
- #
617
- # Here we also initialize the tree_actual dict so that we know the keys
618
- # match between the two. We will later take advantage of the fact that since
619
- # python 3.7 dict order is guaranteed so the expected and actual data will
620
- # have the same order.
621
- sample_size = 1200
622
- tree_actual = {}
623
- for t in tree_expected:
624
- tree_expected[t] = (tree_expected[t] / total_weight) * sample_size
625
- tree_actual[t] = 0
626
-
627
- # Sample the spanning trees
628
- #
629
- # Assert that they are actually trees and record which of the 75 trees we
630
- # have sampled.
631
- #
632
- # For repeatability, we want to take advantage of the decorators in NetworkX
633
- # to randomly sample the same sample each time. However, if we pass in a
634
- # constant seed to sample_spanning_tree we will get the same tree each time.
635
- # Instead, we can create our own random number generator with a fixed seed
636
- # and pass those into sample_spanning_tree.
637
- rng = Random(37)
638
- for _ in range(sample_size):
639
- sampled_tree = nx.random_spanning_tree(G, "lambda_key", seed=rng)
640
- assert nx.is_tree(sampled_tree)
641
-
642
- for t in tree_expected:
643
- if nx.utils.edges_equal(t.edges, sampled_tree.edges):
644
- tree_actual[t] += 1
645
- break
646
-
647
- # Conduct a Chi squared test to see if the actual distribution matches the
648
- # expected one at an alpha = 0.05 significance level.
649
- #
650
- # H_0: The distribution of trees in tree_actual matches the normalized product
651
- # of the edge weights in the tree.
652
- #
653
- # H_a: The distribution of trees in tree_actual follows some other
654
- # distribution of spanning trees.
655
- _, p = stats.chisquare(list(tree_actual.values()), list(tree_expected.values()))
656
-
657
- # Assert that p is greater than the significance level so that we do not
658
- # reject the null hypothesis
659
- assert not p < 0.05
660
-
661
-
662
- def test_random_spanning_tree_additive_small():
663
- """
664
- Sample a single spanning tree from the additive method.
665
- """
666
- pytest.importorskip("scipy")
667
-
668
- edges = {
669
- (0, 1): 1,
670
- (0, 2): 1,
671
- (0, 5): 3,
672
- (1, 2): 2,
673
- (1, 4): 3,
674
- (2, 3): 3,
675
- (5, 3): 4,
676
- (5, 4): 5,
677
- (4, 3): 4,
678
- }
679
-
680
- # Build the graph
681
- G = nx.Graph()
682
- for u, v in edges:
683
- G.add_edge(u, v, weight=edges[(u, v)])
684
-
685
- solution_edges = [(0, 2), (1, 2), (2, 3), (3, 4), (3, 5)]
686
- solution = nx.Graph()
687
- solution.add_edges_from(solution_edges)
688
-
689
- sampled_tree = nx.random_spanning_tree(
690
- G, weight="weight", multiplicative=False, seed=37
691
- )
692
-
693
- assert nx.utils.edges_equal(solution.edges, sampled_tree.edges)
694
-
695
-
696
- @pytest.mark.slow
697
- def test_random_spanning_tree_additive_large():
698
- """
699
- Sample many spanning trees from the additive method.
700
- """
701
- from random import Random
702
-
703
- pytest.importorskip("numpy")
704
- stats = pytest.importorskip("scipy.stats")
705
-
706
- edges = {
707
- (0, 1): 1,
708
- (0, 2): 1,
709
- (0, 5): 3,
710
- (1, 2): 2,
711
- (1, 4): 3,
712
- (2, 3): 3,
713
- (5, 3): 4,
714
- (5, 4): 5,
715
- (4, 3): 4,
716
- }
717
-
718
- # Build the graph
719
- G = nx.Graph()
720
- for u, v in edges:
721
- G.add_edge(u, v, weight=edges[(u, v)])
722
-
723
- # Find the additive weight for each tree.
724
- total_weight = 0
725
- tree_expected = {}
726
- for t in nx.SpanningTreeIterator(G):
727
- # Find the multiplicative weight of the spanning tree
728
- weight = 0
729
- for u, v, d in t.edges(data="weight"):
730
- weight += d
731
- tree_expected[t] = weight
732
- total_weight += weight
733
-
734
- # Assert that every tree has an entry in the expected distribution
735
- assert len(tree_expected) == 75
736
-
737
- # Set the sample size and then calculate the expected number of times we
738
- # expect to see each tree. This test uses a near minimum sample size where
739
- # the most unlikely tree has an expected frequency of 5.07.
740
- # (Minimum required is 5)
741
- #
742
- # Here we also initialize the tree_actual dict so that we know the keys
743
- # match between the two. We will later take advantage of the fact that since
744
- # python 3.7 dict order is guaranteed so the expected and actual data will
745
- # have the same order.
746
- sample_size = 500
747
- tree_actual = {}
748
- for t in tree_expected:
749
- tree_expected[t] = (tree_expected[t] / total_weight) * sample_size
750
- tree_actual[t] = 0
751
-
752
- # Sample the spanning trees
753
- #
754
- # Assert that they are actually trees and record which of the 75 trees we
755
- # have sampled.
756
- #
757
- # For repeatability, we want to take advantage of the decorators in NetworkX
758
- # to randomly sample the same sample each time. However, if we pass in a
759
- # constant seed to sample_spanning_tree we will get the same tree each time.
760
- # Instead, we can create our own random number generator with a fixed seed
761
- # and pass those into sample_spanning_tree.
762
- rng = Random(37)
763
- for _ in range(sample_size):
764
- sampled_tree = nx.random_spanning_tree(
765
- G, "weight", multiplicative=False, seed=rng
766
- )
767
- assert nx.is_tree(sampled_tree)
768
-
769
- for t in tree_expected:
770
- if nx.utils.edges_equal(t.edges, sampled_tree.edges):
771
- tree_actual[t] += 1
772
- break
773
-
774
- # Conduct a Chi squared test to see if the actual distribution matches the
775
- # expected one at an alpha = 0.05 significance level.
776
- #
777
- # H_0: The distribution of trees in tree_actual matches the normalized product
778
- # of the edge weights in the tree.
779
- #
780
- # H_a: The distribution of trees in tree_actual follows some other
781
- # distribution of spanning trees.
782
- _, p = stats.chisquare(list(tree_actual.values()), list(tree_expected.values()))
783
-
784
- # Assert that p is greater than the significance level so that we do not
785
- # reject the null hypothesis
786
- assert not p < 0.05
787
-
788
-
789
- def test_random_spanning_tree_empty_graph():
790
- G = nx.Graph()
791
- rst = nx.tree.random_spanning_tree(G)
792
- assert len(rst.nodes) == 0
793
- assert len(rst.edges) == 0
794
-
795
-
796
- def test_random_spanning_tree_single_node_graph():
797
- G = nx.Graph()
798
- G.add_node(0)
799
- rst = nx.tree.random_spanning_tree(G)
800
- assert len(rst.nodes) == 1
801
- assert len(rst.edges) == 0
802
-
803
-
804
- def test_random_spanning_tree_single_node_loop():
805
- G = nx.Graph()
806
- G.add_node(0)
807
- G.add_edge(0, 0)
808
- rst = nx.tree.random_spanning_tree(G)
809
- assert len(rst.nodes) == 1
810
- assert len(rst.edges) == 0
811
-
812
-
813
- class TestNumberSpanningTrees:
814
- @classmethod
815
- def setup_class(cls):
816
- global np
817
- np = pytest.importorskip("numpy")
818
- sp = pytest.importorskip("scipy")
819
-
820
- def test_nst_disconnected(self):
821
- G = nx.empty_graph(2)
822
- assert np.isclose(nx.number_of_spanning_trees(G), 0)
823
-
824
- def test_nst_no_nodes(self):
825
- G = nx.Graph()
826
- with pytest.raises(nx.NetworkXPointlessConcept):
827
- nx.number_of_spanning_trees(G)
828
-
829
- def test_nst_weight(self):
830
- G = nx.Graph()
831
- G.add_edge(1, 2, weight=1)
832
- G.add_edge(1, 3, weight=1)
833
- G.add_edge(2, 3, weight=2)
834
- # weights are ignored
835
- assert np.isclose(nx.number_of_spanning_trees(G), 3)
836
- # including weight
837
- assert np.isclose(nx.number_of_spanning_trees(G, weight="weight"), 5)
838
-
839
- def test_nst_negative_weight(self):
840
- G = nx.Graph()
841
- G.add_edge(1, 2, weight=1)
842
- G.add_edge(1, 3, weight=-1)
843
- G.add_edge(2, 3, weight=-2)
844
- # weights are ignored
845
- assert np.isclose(nx.number_of_spanning_trees(G), 3)
846
- # including weight
847
- assert np.isclose(nx.number_of_spanning_trees(G, weight="weight"), -1)
848
-
849
- def test_nst_selfloop(self):
850
- # self-loops are ignored
851
- G = nx.complete_graph(3)
852
- G.add_edge(1, 1)
853
- assert np.isclose(nx.number_of_spanning_trees(G), 3)
854
-
855
- def test_nst_multigraph(self):
856
- G = nx.MultiGraph()
857
- G.add_edge(1, 2)
858
- G.add_edge(1, 2)
859
- G.add_edge(1, 3)
860
- G.add_edge(2, 3)
861
- assert np.isclose(nx.number_of_spanning_trees(G), 5)
862
-
863
- def test_nst_complete_graph(self):
864
- # this is known as Cayley's formula
865
- N = 5
866
- G = nx.complete_graph(N)
867
- assert np.isclose(nx.number_of_spanning_trees(G), N ** (N - 2))
868
-
869
- def test_nst_path_graph(self):
870
- G = nx.path_graph(5)
871
- assert np.isclose(nx.number_of_spanning_trees(G), 1)
872
-
873
- def test_nst_cycle_graph(self):
874
- G = nx.cycle_graph(5)
875
- assert np.isclose(nx.number_of_spanning_trees(G), 5)
876
-
877
- def test_nst_directed_noroot(self):
878
- G = nx.empty_graph(3, create_using=nx.MultiDiGraph)
879
- with pytest.raises(nx.NetworkXError):
880
- nx.number_of_spanning_trees(G)
881
-
882
- def test_nst_directed_root_not_exist(self):
883
- G = nx.empty_graph(3, create_using=nx.MultiDiGraph)
884
- with pytest.raises(nx.NetworkXError):
885
- nx.number_of_spanning_trees(G, root=42)
886
-
887
- def test_nst_directed_not_weak_connected(self):
888
- G = nx.DiGraph()
889
- G.add_edge(1, 2)
890
- G.add_edge(3, 4)
891
- assert np.isclose(nx.number_of_spanning_trees(G, root=1), 0)
892
-
893
- def test_nst_directed_cycle_graph(self):
894
- G = nx.DiGraph()
895
- G = nx.cycle_graph(7, G)
896
- assert np.isclose(nx.number_of_spanning_trees(G, root=0), 1)
897
-
898
- def test_nst_directed_complete_graph(self):
899
- G = nx.DiGraph()
900
- G = nx.complete_graph(7, G)
901
- assert np.isclose(nx.number_of_spanning_trees(G, root=0), 7**5)
902
-
903
- def test_nst_directed_multi(self):
904
- G = nx.MultiDiGraph()
905
- G = nx.cycle_graph(3, G)
906
- G.add_edge(1, 2)
907
- assert np.isclose(nx.number_of_spanning_trees(G, root=0), 2)
908
-
909
- def test_nst_directed_selfloop(self):
910
- G = nx.MultiDiGraph()
911
- G = nx.cycle_graph(3, G)
912
- G.add_edge(1, 1)
913
- assert np.isclose(nx.number_of_spanning_trees(G, root=0), 1)
914
-
915
- def test_nst_directed_weak_connected(self):
916
- G = nx.MultiDiGraph()
917
- G = nx.cycle_graph(3, G)
918
- G.remove_edge(1, 2)
919
- assert np.isclose(nx.number_of_spanning_trees(G, root=0), 0)
920
-
921
- def test_nst_directed_weighted(self):
922
- # from root=1:
923
- # arborescence 1: 1->2, 1->3, weight=2*1
924
- # arborescence 2: 1->2, 2->3, weight=2*3
925
- G = nx.DiGraph()
926
- G.add_edge(1, 2, weight=2)
927
- G.add_edge(1, 3, weight=1)
928
- G.add_edge(2, 3, weight=3)
929
- Nst = nx.number_of_spanning_trees(G, root=1, weight="weight")
930
- assert np.isclose(Nst, 8)
931
- Nst = nx.number_of_spanning_trees(G, root=2, weight="weight")
932
- assert np.isclose(Nst, 0)
933
- Nst = nx.number_of_spanning_trees(G, root=3, weight="weight")
934
- assert np.isclose(Nst, 0)