okstra 0.114.0 → 0.115.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/docs/kr/architecture.md +2 -2
- package/docs/kr/follow-ups/2026-07-10-final-report-option-3.md +51 -0
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/agents/workers/report-writer-worker.md +1 -0
- package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
- package/runtime/python/okstra_ctl/implementation_stage.py +46 -39
- package/runtime/python/okstra_ctl/report_views.py +151 -12
- package/runtime/python/okstra_ctl/run.py +24 -24
- package/runtime/python/okstra_ctl/worktree.py +1 -1
- package/runtime/python/okstra_token_usage/claude.py +58 -19
- package/runtime/python/okstra_token_usage/collect.py +3 -1
- package/runtime/python/okstra_vendor/__init__.py +3 -0
- package/runtime/schemas/final-report-v1.0.schema.json +20 -0
- package/runtime/templates/reports/final-report.template.md +14 -0
- package/runtime/templates/reports/i18n/en.json +23 -12
- package/runtime/templates/reports/i18n/ko.json +23 -12
- package/runtime/templates/reports/report.css +55 -0
- package/runtime/templates/reports/report.js +53 -1
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +0 -41
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +0 -112
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +0 -199
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +0 -146
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +0 -59
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +0 -78
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +0 -303
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +0 -8
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +0 -94
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +0 -31
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +0 -306
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +0 -1014
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +0 -274
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +0 -68
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +0 -81
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +0 -143
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +0 -122
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +0 -174
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +0 -107
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +0 -87
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +0 -125
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +0 -192
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +0 -84
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +0 -33
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +0 -240
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +0 -334
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +0 -407
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +0 -218
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +0 -327
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +0 -138
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +0 -409
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +0 -35
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +0 -80
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +0 -923
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +0 -354
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +0 -274
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +0 -259
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +0 -147
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +0 -43
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +0 -144
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +0 -73
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +0 -186
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +0 -277
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +0 -122
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +0 -345
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +0 -220
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +0 -344
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +0 -87
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +0 -140
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +0 -82
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +0 -110
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +0 -302
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +0 -64
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +0 -863
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +0 -147
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +0 -157
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +0 -85
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +0 -106
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +0 -91
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +0 -241
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +0 -138
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +0 -76
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +0 -264
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +0 -152
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +0 -340
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +0 -139
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +0 -26
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +0 -70
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +0 -248
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +0 -138
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +0 -55
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +0 -193
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +0 -96
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +0 -421
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +0 -309
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +0 -249
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +0 -502
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +0 -488
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +0 -323
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +0 -280
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +0 -102
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gl1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gw1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/netgen-2.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_gomory_hu.py +0 -128
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow.py +0 -573
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow_large_graph.py +0 -155
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_mincost.py +0 -475
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_networksimplex.py +0 -481
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/wlm3.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_ismags.py +0 -719
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphism.py +0 -103
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphvf2.py +0 -490
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_match_helpers.py +0 -64
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_temporalisomorphvf2.py +0 -212
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_tree_isomorphism.py +0 -202
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp.py +0 -1655
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp_helpers.py +0 -3118
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2userfunc.py +0 -196
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_hits.py +0 -77
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_pagerank.py +0 -213
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/tests/test_contraction.py +0 -544
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_all.py +0 -328
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_binary.py +0 -451
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_product.py +0 -491
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_unary.py +0 -55
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_astar.py +0 -254
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense.py +0 -212
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense_numpy.py +0 -88
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_generic.py +0 -511
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_unweighted.py +0 -149
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_weighted.py +0 -983
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_asteroidal.py +0 -23
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_boundary.py +0 -154
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_bridges.py +0 -144
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_broadcasting.py +0 -109
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chains.py +0 -136
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chordal.py +0 -129
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_clique.py +0 -300
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cluster.py +0 -678
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_communicability.py +0 -80
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_core.py +0 -266
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_covering.py +0 -85
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cuts.py +0 -171
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cycles.py +0 -984
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_d_separation.py +0 -340
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dag.py +0 -835
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_measures.py +0 -831
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_regular.py +0 -85
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominance.py +0 -299
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominating.py +0 -115
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_efficiency.py +0 -58
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_euler.py +0 -314
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graph_hashing.py +0 -872
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graphical.py +0 -163
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hierarchy.py +0 -46
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hybrid.py +0 -24
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_isolate.py +0 -26
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_link_prediction.py +0 -615
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_lowest_common_ancestors.py +0 -459
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_matching.py +0 -556
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_max_weight_clique.py +0 -179
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_mis.py +0 -62
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_moral.py +0 -15
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_node_classification.py +0 -140
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_non_randomness.py +0 -60
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_perfect_graph.py +0 -27
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planar_drawing.py +0 -274
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planarity.py +0 -556
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_polynomials.py +0 -57
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_reciprocity.py +0 -37
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_regular.py +0 -88
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_richclub.py +0 -149
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_similarity.py +0 -1158
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_simple_paths.py +0 -803
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smallworld.py +0 -76
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smetric.py +0 -8
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_sparsifiers.py +0 -138
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_structuralholes.py +0 -191
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_summarization.py +0 -642
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_swap.py +0 -179
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_threshold.py +0 -270
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_time_dependent.py +0 -431
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_tournament.py +0 -161
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_triads.py +0 -248
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_vitality.py +0 -41
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_voronoi.py +0 -103
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_walks.py +0 -54
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_wiener.py +0 -157
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_beamsearch.py +0 -25
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_bfs.py +0 -203
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_dfs.py +0 -307
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgebfs.py +0 -147
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgedfs.py +0 -131
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_branchings.py +0 -624
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_coding.py +0 -114
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_decomposition.py +0 -79
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_distance_measures.py +0 -99
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_mst.py +0 -934
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_operations.py +0 -53
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_recognition.py +0 -174
- package/runtime/python/okstra_vendor/networkx/classes/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/dispatch_interface.py +0 -192
- package/runtime/python/okstra_vendor/networkx/classes/tests/historical_tests.py +0 -476
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_coreviews.py +0 -362
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph.py +0 -331
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph_historical.py +0 -110
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_filters.py +0 -177
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_function.py +0 -1045
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph.py +0 -950
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph_historical.py +0 -12
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graphviews.py +0 -349
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multidigraph.py +0 -459
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multigraph.py +0 -528
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_reportviews.py +0 -1421
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_special.py +0 -131
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_subgraphviews.py +0 -371
- package/runtime/python/okstra_vendor/networkx/conftest.py +0 -261
- package/runtime/python/okstra_vendor/networkx/drawing/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_complex.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_empty_graph.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_labels_and_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_shortest_path.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_agraph.py +0 -237
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_image_comparison_pylab_mpl.py +0 -229
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_latex.py +0 -285
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_layout.py +0 -631
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pydot.py +0 -146
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pylab.py +0 -1582
- package/runtime/python/okstra_vendor/networkx/generators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_atlas.py +0 -75
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_classic.py +0 -642
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_cographs.py +0 -20
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_community.py +0 -362
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_degree_seq.py +0 -224
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_directed.py +0 -189
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_duplication.py +0 -103
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_ego.py +0 -39
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_expanders.py +0 -182
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_geometric.py +0 -488
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_harary_graph.py +0 -133
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_internet_as_graphs.py +0 -221
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_intersection.py +0 -28
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_interval_graph.py +0 -144
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_joint_degree_seq.py +0 -125
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_lattice.py +0 -264
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_line.py +0 -316
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_mycielski.py +0 -30
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_nonisomorphic_trees.py +0 -82
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_clustered.py +0 -33
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_graphs.py +0 -495
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_small.py +0 -220
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_spectral_graph_forge.py +0 -49
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_stochastic.py +0 -72
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_sudoku.py +0 -92
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_time_series.py +0 -64
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_trees.py +0 -195
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_triads.py +0 -15
- package/runtime/python/okstra_vendor/networkx/linalg/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py +0 -400
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py +0 -108
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py +0 -40
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_graphmatrix.py +0 -275
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_laplacian.py +0 -334
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_modularity.py +0 -86
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_spectrum.py +0 -70
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_adjacency.py +0 -78
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_cytoscape.py +0 -78
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_node_link.py +0 -109
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_tree.py +0 -48
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_adjlist.py +0 -354
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_edgelist.py +0 -318
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gexf.py +0 -612
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gml.py +0 -744
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graph6.py +0 -181
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graphml.py +0 -1531
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_leda.py +0 -30
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_p2g.py +0 -63
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_pajek.py +0 -128
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_sparse6.py +0 -166
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_text.py +0 -1742
- package/runtime/python/okstra_vendor/networkx/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_all_random_functions.py +0 -248
- package/runtime/python/okstra_vendor/networkx/tests/test_convert.py +0 -321
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_numpy.py +0 -531
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_pandas.py +0 -349
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_scipy.py +0 -281
- package/runtime/python/okstra_vendor/networkx/tests/test_exceptions.py +0 -40
- package/runtime/python/okstra_vendor/networkx/tests/test_import.py +0 -11
- package/runtime/python/okstra_vendor/networkx/tests/test_lazy_imports.py +0 -96
- package/runtime/python/okstra_vendor/networkx/tests/test_relabel.py +0 -349
- package/runtime/python/okstra_vendor/networkx/tests/test_removed_functions_exception_messages.py +0 -8
- package/runtime/python/okstra_vendor/networkx/utils/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test__init.py +0 -11
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_backends.py +0 -225
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_config.py +0 -263
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_decorators.py +0 -510
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_heaps.py +0 -131
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_mapped_queue.py +0 -268
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_misc.py +0 -393
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_random_sequence.py +0 -53
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_rcm.py +0 -63
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_unionfind.py +0 -55
|
@@ -1,612 +0,0 @@
|
|
|
1
|
-
import io
|
|
2
|
-
import time
|
|
3
|
-
|
|
4
|
-
import pytest
|
|
5
|
-
|
|
6
|
-
import networkx as nx
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
def test_gexf_v1_3(tmp_path):
|
|
10
|
-
"""'Basic graph' example from https://gexf.net/schema.html"""
|
|
11
|
-
# GEXF file from published example
|
|
12
|
-
data = """<?xml version="1.0" encoding="UTF-8"?>
|
|
13
|
-
<gexf xmlns="http://gexf.net/1.3" version="1.3">
|
|
14
|
-
<graph mode="static" defaultedgetype="directed">
|
|
15
|
-
<nodes>
|
|
16
|
-
<node id="0" label="Hello" />
|
|
17
|
-
<node id="1" label="Word" />
|
|
18
|
-
</nodes>
|
|
19
|
-
<edges>
|
|
20
|
-
<edge source="0" target="1" />
|
|
21
|
-
</edges>
|
|
22
|
-
</graph>
|
|
23
|
-
</gexf>
|
|
24
|
-
"""
|
|
25
|
-
with open(fname := (tmp_path / "basic.gexf"), "w") as fh:
|
|
26
|
-
fh.write(data)
|
|
27
|
-
|
|
28
|
-
# Expected output based on xml input
|
|
29
|
-
expected = nx.DiGraph([("0", "1")])
|
|
30
|
-
nx.set_node_attributes(expected, {"0": "Hello", "1": "Word"}, name="label")
|
|
31
|
-
expected.graph = {"mode": "static", "edge_default": {}}
|
|
32
|
-
|
|
33
|
-
# Load example with version explicitly set
|
|
34
|
-
G = nx.read_gexf(fname, version="1.3")
|
|
35
|
-
assert nx.utils.graphs_equal(G, expected)
|
|
36
|
-
|
|
37
|
-
# And with the "default" version
|
|
38
|
-
G = nx.read_gexf(fname)
|
|
39
|
-
assert nx.utils.graphs_equal(G, expected)
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
@pytest.mark.parametrize("time_attr", ("start", "end"))
|
|
43
|
-
@pytest.mark.parametrize("dyn_attr", ("static", "dynamic"))
|
|
44
|
-
def test_dynamic_graph_has_timeformat(time_attr, dyn_attr, tmp_path):
|
|
45
|
-
"""Ensure that graphs which have a 'start' or 'stop' attribute get a
|
|
46
|
-
'timeformat' attribute upon parsing. See gh-7914."""
|
|
47
|
-
G = nx.MultiGraph(mode=dyn_attr)
|
|
48
|
-
G.add_node(0)
|
|
49
|
-
G.nodes[0][time_attr] = 1
|
|
50
|
-
# Write out
|
|
51
|
-
fname = tmp_path / "foo.gexf"
|
|
52
|
-
nx.write_gexf(G, fname)
|
|
53
|
-
# Check that timeformat is added to saved data
|
|
54
|
-
with open(fname) as fh:
|
|
55
|
-
assert 'timeformat="long"' in fh.read()
|
|
56
|
-
# Round-trip
|
|
57
|
-
H = nx.read_gexf(fname)
|
|
58
|
-
# If any node has a "start" or "end" attr, it is considered dynamic
|
|
59
|
-
# regardless of the graph "mode" attr
|
|
60
|
-
assert H.graph["mode"] == "dynamic"
|
|
61
|
-
assert nx.utils.nodes_equal(G.edges, H.edges)
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
class TestGEXF:
|
|
65
|
-
@classmethod
|
|
66
|
-
def setup_class(cls):
|
|
67
|
-
cls.simple_directed_data = """<?xml version="1.0" encoding="UTF-8"?>
|
|
68
|
-
<gexf xmlns="http://www.gexf.net/1.2draft" version="1.2">
|
|
69
|
-
<graph mode="static" defaultedgetype="directed">
|
|
70
|
-
<nodes>
|
|
71
|
-
<node id="0" label="Hello" />
|
|
72
|
-
<node id="1" label="Word" />
|
|
73
|
-
</nodes>
|
|
74
|
-
<edges>
|
|
75
|
-
<edge id="0" source="0" target="1" />
|
|
76
|
-
</edges>
|
|
77
|
-
</graph>
|
|
78
|
-
</gexf>
|
|
79
|
-
"""
|
|
80
|
-
cls.simple_directed_graph = nx.DiGraph()
|
|
81
|
-
cls.simple_directed_graph.add_node("0", label="Hello")
|
|
82
|
-
cls.simple_directed_graph.add_node("1", label="World")
|
|
83
|
-
cls.simple_directed_graph.add_edge("0", "1", id="0")
|
|
84
|
-
|
|
85
|
-
cls.simple_directed_fh = io.BytesIO(cls.simple_directed_data.encode("UTF-8"))
|
|
86
|
-
|
|
87
|
-
cls.attribute_data = """<?xml version="1.0" encoding="UTF-8"?>\
|
|
88
|
-
<gexf xmlns="http://www.gexf.net/1.2draft" xmlns:xsi="http://www.w3.\
|
|
89
|
-
org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.gexf.net/\
|
|
90
|
-
1.2draft http://www.gexf.net/1.2draft/gexf.xsd" version="1.2">
|
|
91
|
-
<meta lastmodifieddate="2009-03-20">
|
|
92
|
-
<creator>Gephi.org</creator>
|
|
93
|
-
<description>A Web network</description>
|
|
94
|
-
</meta>
|
|
95
|
-
<graph defaultedgetype="directed">
|
|
96
|
-
<attributes class="node">
|
|
97
|
-
<attribute id="0" title="url" type="string"/>
|
|
98
|
-
<attribute id="1" title="indegree" type="integer"/>
|
|
99
|
-
<attribute id="2" title="frog" type="boolean">
|
|
100
|
-
<default>true</default>
|
|
101
|
-
</attribute>
|
|
102
|
-
</attributes>
|
|
103
|
-
<nodes>
|
|
104
|
-
<node id="0" label="Gephi">
|
|
105
|
-
<attvalues>
|
|
106
|
-
<attvalue for="0" value="https://gephi.org"/>
|
|
107
|
-
<attvalue for="1" value="1"/>
|
|
108
|
-
<attvalue for="2" value="false"/>
|
|
109
|
-
</attvalues>
|
|
110
|
-
</node>
|
|
111
|
-
<node id="1" label="Webatlas">
|
|
112
|
-
<attvalues>
|
|
113
|
-
<attvalue for="0" value="http://webatlas.fr"/>
|
|
114
|
-
<attvalue for="1" value="2"/>
|
|
115
|
-
<attvalue for="2" value="false"/>
|
|
116
|
-
</attvalues>
|
|
117
|
-
</node>
|
|
118
|
-
<node id="2" label="RTGI">
|
|
119
|
-
<attvalues>
|
|
120
|
-
<attvalue for="0" value="http://rtgi.fr"/>
|
|
121
|
-
<attvalue for="1" value="1"/>
|
|
122
|
-
<attvalue for="2" value="true"/>
|
|
123
|
-
</attvalues>
|
|
124
|
-
</node>
|
|
125
|
-
<node id="3" label="BarabasiLab">
|
|
126
|
-
<attvalues>
|
|
127
|
-
<attvalue for="0" value="http://barabasilab.com"/>
|
|
128
|
-
<attvalue for="1" value="1"/>
|
|
129
|
-
<attvalue for="2" value="true"/>
|
|
130
|
-
</attvalues>
|
|
131
|
-
</node>
|
|
132
|
-
</nodes>
|
|
133
|
-
<edges>
|
|
134
|
-
<edge id="0" source="0" target="1" label="foo"/>
|
|
135
|
-
<edge id="1" source="0" target="2"/>
|
|
136
|
-
<edge id="2" source="1" target="0"/>
|
|
137
|
-
<edge id="3" source="2" target="1"/>
|
|
138
|
-
<edge id="4" source="0" target="3"/>
|
|
139
|
-
</edges>
|
|
140
|
-
</graph>
|
|
141
|
-
</gexf>
|
|
142
|
-
"""
|
|
143
|
-
cls.attribute_graph = nx.DiGraph()
|
|
144
|
-
cls.attribute_graph.graph["node_default"] = {"frog": True}
|
|
145
|
-
cls.attribute_graph.add_node(
|
|
146
|
-
"0", label="Gephi", url="https://gephi.org", indegree=1, frog=False
|
|
147
|
-
)
|
|
148
|
-
cls.attribute_graph.add_node(
|
|
149
|
-
"1", label="Webatlas", url="http://webatlas.fr", indegree=2, frog=False
|
|
150
|
-
)
|
|
151
|
-
cls.attribute_graph.add_node(
|
|
152
|
-
"2", label="RTGI", url="http://rtgi.fr", indegree=1, frog=True
|
|
153
|
-
)
|
|
154
|
-
cls.attribute_graph.add_node(
|
|
155
|
-
"3",
|
|
156
|
-
label="BarabasiLab",
|
|
157
|
-
url="http://barabasilab.com",
|
|
158
|
-
indegree=1,
|
|
159
|
-
frog=True,
|
|
160
|
-
)
|
|
161
|
-
cls.attribute_graph.add_edge("0", "1", id="0", label="foo")
|
|
162
|
-
cls.attribute_graph.add_edge("0", "2", id="1")
|
|
163
|
-
cls.attribute_graph.add_edge("1", "0", id="2")
|
|
164
|
-
cls.attribute_graph.add_edge("2", "1", id="3")
|
|
165
|
-
cls.attribute_graph.add_edge("0", "3", id="4")
|
|
166
|
-
cls.attribute_fh = io.BytesIO(cls.attribute_data.encode("UTF-8"))
|
|
167
|
-
|
|
168
|
-
cls.simple_undirected_data = """<?xml version="1.0" encoding="UTF-8"?>
|
|
169
|
-
<gexf xmlns="http://www.gexf.net/1.2draft" version="1.2">
|
|
170
|
-
<graph mode="static" defaultedgetype="undirected">
|
|
171
|
-
<nodes>
|
|
172
|
-
<node id="0" label="Hello" />
|
|
173
|
-
<node id="1" label="Word" />
|
|
174
|
-
</nodes>
|
|
175
|
-
<edges>
|
|
176
|
-
<edge id="0" source="0" target="1" />
|
|
177
|
-
</edges>
|
|
178
|
-
</graph>
|
|
179
|
-
</gexf>
|
|
180
|
-
"""
|
|
181
|
-
cls.simple_undirected_graph = nx.Graph()
|
|
182
|
-
cls.simple_undirected_graph.add_node("0", label="Hello")
|
|
183
|
-
cls.simple_undirected_graph.add_node("1", label="World")
|
|
184
|
-
cls.simple_undirected_graph.add_edge("0", "1", id="0")
|
|
185
|
-
|
|
186
|
-
cls.simple_undirected_fh = io.BytesIO(
|
|
187
|
-
cls.simple_undirected_data.encode("UTF-8")
|
|
188
|
-
)
|
|
189
|
-
|
|
190
|
-
def test_read_simple_directed_graphml(self):
|
|
191
|
-
G = self.simple_directed_graph
|
|
192
|
-
H = nx.read_gexf(self.simple_directed_fh)
|
|
193
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
194
|
-
assert sorted(G.edges()) == sorted(H.edges())
|
|
195
|
-
assert sorted(G.edges(data=True)) == sorted(H.edges(data=True))
|
|
196
|
-
self.simple_directed_fh.seek(0)
|
|
197
|
-
|
|
198
|
-
def test_write_read_simple_directed_graphml(self):
|
|
199
|
-
G = self.simple_directed_graph
|
|
200
|
-
fh = io.BytesIO()
|
|
201
|
-
nx.write_gexf(G, fh)
|
|
202
|
-
fh.seek(0)
|
|
203
|
-
H = nx.read_gexf(fh)
|
|
204
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
205
|
-
assert sorted(G.edges()) == sorted(H.edges())
|
|
206
|
-
assert sorted(G.edges(data=True)) == sorted(H.edges(data=True))
|
|
207
|
-
self.simple_directed_fh.seek(0)
|
|
208
|
-
|
|
209
|
-
def test_read_simple_undirected_graphml(self):
|
|
210
|
-
G = self.simple_undirected_graph
|
|
211
|
-
H = nx.read_gexf(self.simple_undirected_fh)
|
|
212
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
213
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
214
|
-
sorted(e) for e in H.edges()
|
|
215
|
-
)
|
|
216
|
-
self.simple_undirected_fh.seek(0)
|
|
217
|
-
|
|
218
|
-
def test_read_attribute_graphml(self):
|
|
219
|
-
G = self.attribute_graph
|
|
220
|
-
H = nx.read_gexf(self.attribute_fh)
|
|
221
|
-
assert sorted(G.nodes(True)) == sorted(H.nodes(data=True))
|
|
222
|
-
ge = sorted(G.edges(data=True))
|
|
223
|
-
he = sorted(H.edges(data=True))
|
|
224
|
-
for a, b in zip(ge, he):
|
|
225
|
-
assert a == b
|
|
226
|
-
self.attribute_fh.seek(0)
|
|
227
|
-
|
|
228
|
-
def test_directed_edge_in_undirected(self):
|
|
229
|
-
s = """<?xml version="1.0" encoding="UTF-8"?>
|
|
230
|
-
<gexf xmlns="http://www.gexf.net/1.2draft" version='1.2'>
|
|
231
|
-
<graph mode="static" defaultedgetype="undirected" name="">
|
|
232
|
-
<nodes>
|
|
233
|
-
<node id="0" label="Hello" />
|
|
234
|
-
<node id="1" label="Word" />
|
|
235
|
-
</nodes>
|
|
236
|
-
<edges>
|
|
237
|
-
<edge id="0" source="0" target="1" type="directed"/>
|
|
238
|
-
</edges>
|
|
239
|
-
</graph>
|
|
240
|
-
</gexf>
|
|
241
|
-
"""
|
|
242
|
-
fh = io.BytesIO(s.encode("UTF-8"))
|
|
243
|
-
pytest.raises(nx.NetworkXError, nx.read_gexf, fh)
|
|
244
|
-
|
|
245
|
-
def test_undirected_edge_in_directed(self):
|
|
246
|
-
s = """<?xml version="1.0" encoding="UTF-8"?>
|
|
247
|
-
<gexf xmlns="http://www.gexf.net/1.2draft" version='1.2'>
|
|
248
|
-
<graph mode="static" defaultedgetype="directed" name="">
|
|
249
|
-
<nodes>
|
|
250
|
-
<node id="0" label="Hello" />
|
|
251
|
-
<node id="1" label="Word" />
|
|
252
|
-
</nodes>
|
|
253
|
-
<edges>
|
|
254
|
-
<edge id="0" source="0" target="1" type="undirected"/>
|
|
255
|
-
</edges>
|
|
256
|
-
</graph>
|
|
257
|
-
</gexf>
|
|
258
|
-
"""
|
|
259
|
-
fh = io.BytesIO(s.encode("UTF-8"))
|
|
260
|
-
pytest.raises(nx.NetworkXError, nx.read_gexf, fh)
|
|
261
|
-
|
|
262
|
-
def test_key_raises(self):
|
|
263
|
-
s = """<?xml version="1.0" encoding="UTF-8"?>
|
|
264
|
-
<gexf xmlns="http://www.gexf.net/1.2draft" version='1.2'>
|
|
265
|
-
<graph mode="static" defaultedgetype="directed" name="">
|
|
266
|
-
<nodes>
|
|
267
|
-
<node id="0" label="Hello">
|
|
268
|
-
<attvalues>
|
|
269
|
-
<attvalue for='0' value='1'/>
|
|
270
|
-
</attvalues>
|
|
271
|
-
</node>
|
|
272
|
-
<node id="1" label="Word" />
|
|
273
|
-
</nodes>
|
|
274
|
-
<edges>
|
|
275
|
-
<edge id="0" source="0" target="1" type="undirected"/>
|
|
276
|
-
</edges>
|
|
277
|
-
</graph>
|
|
278
|
-
</gexf>
|
|
279
|
-
"""
|
|
280
|
-
fh = io.BytesIO(s.encode("UTF-8"))
|
|
281
|
-
pytest.raises(nx.NetworkXError, nx.read_gexf, fh)
|
|
282
|
-
|
|
283
|
-
def test_relabel(self):
|
|
284
|
-
s = """<?xml version="1.0" encoding="UTF-8"?>
|
|
285
|
-
<gexf xmlns="http://www.gexf.net/1.2draft" version='1.2'>
|
|
286
|
-
<graph mode="static" defaultedgetype="directed" name="">
|
|
287
|
-
<nodes>
|
|
288
|
-
<node id="0" label="Hello" />
|
|
289
|
-
<node id="1" label="Word" />
|
|
290
|
-
</nodes>
|
|
291
|
-
<edges>
|
|
292
|
-
<edge id="0" source="0" target="1"/>
|
|
293
|
-
</edges>
|
|
294
|
-
</graph>
|
|
295
|
-
</gexf>
|
|
296
|
-
"""
|
|
297
|
-
fh = io.BytesIO(s.encode("UTF-8"))
|
|
298
|
-
G = nx.read_gexf(fh, relabel=True)
|
|
299
|
-
assert sorted(G.nodes()) == ["Hello", "Word"]
|
|
300
|
-
|
|
301
|
-
def test_default_attribute(self):
|
|
302
|
-
G = nx.Graph()
|
|
303
|
-
G.add_node(1, label="1", color="green")
|
|
304
|
-
nx.add_path(G, [0, 1, 2, 3])
|
|
305
|
-
G.add_edge(1, 2, foo=3)
|
|
306
|
-
G.graph["node_default"] = {"color": "yellow"}
|
|
307
|
-
G.graph["edge_default"] = {"foo": 7}
|
|
308
|
-
fh = io.BytesIO()
|
|
309
|
-
nx.write_gexf(G, fh)
|
|
310
|
-
fh.seek(0)
|
|
311
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
312
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
313
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
314
|
-
sorted(e) for e in H.edges()
|
|
315
|
-
)
|
|
316
|
-
# Reading a gexf graph always sets mode attribute to either
|
|
317
|
-
# 'static' or 'dynamic'. Remove the mode attribute from the
|
|
318
|
-
# read graph for the sake of comparing remaining attributes.
|
|
319
|
-
del H.graph["mode"]
|
|
320
|
-
assert G.graph == H.graph
|
|
321
|
-
|
|
322
|
-
def test_serialize_ints_to_strings(self):
|
|
323
|
-
G = nx.Graph()
|
|
324
|
-
G.add_node(1, id=7, label=77)
|
|
325
|
-
fh = io.BytesIO()
|
|
326
|
-
nx.write_gexf(G, fh)
|
|
327
|
-
fh.seek(0)
|
|
328
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
329
|
-
assert list(H) == [7]
|
|
330
|
-
assert H.nodes[7]["label"] == "77"
|
|
331
|
-
|
|
332
|
-
def test_write_with_node_attributes(self):
|
|
333
|
-
# Addresses #673.
|
|
334
|
-
G = nx.Graph()
|
|
335
|
-
G.add_edges_from([(0, 1), (1, 2), (2, 3)])
|
|
336
|
-
for i in range(4):
|
|
337
|
-
G.nodes[i]["id"] = i
|
|
338
|
-
G.nodes[i]["label"] = i
|
|
339
|
-
G.nodes[i]["pid"] = i
|
|
340
|
-
G.nodes[i]["start"] = i
|
|
341
|
-
G.nodes[i]["end"] = i + 1
|
|
342
|
-
|
|
343
|
-
expected = f"""<gexf xmlns="http://www.gexf.net/1.2draft" xmlns:xsi\
|
|
344
|
-
="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation=\
|
|
345
|
-
"http://www.gexf.net/1.2draft http://www.gexf.net/1.2draft/\
|
|
346
|
-
gexf.xsd" version="1.2">
|
|
347
|
-
<meta lastmodifieddate="{time.strftime("%Y-%m-%d")}">
|
|
348
|
-
<creator>NetworkX {nx.__version__}</creator>
|
|
349
|
-
</meta>
|
|
350
|
-
<graph defaultedgetype="undirected" mode="dynamic" name="" timeformat="long">
|
|
351
|
-
<nodes>
|
|
352
|
-
<node id="0" label="0" pid="0" start="0" end="1" />
|
|
353
|
-
<node id="1" label="1" pid="1" start="1" end="2" />
|
|
354
|
-
<node id="2" label="2" pid="2" start="2" end="3" />
|
|
355
|
-
<node id="3" label="3" pid="3" start="3" end="4" />
|
|
356
|
-
</nodes>
|
|
357
|
-
<edges>
|
|
358
|
-
<edge source="0" target="1" id="0" />
|
|
359
|
-
<edge source="1" target="2" id="1" />
|
|
360
|
-
<edge source="2" target="3" id="2" />
|
|
361
|
-
</edges>
|
|
362
|
-
</graph>
|
|
363
|
-
</gexf>"""
|
|
364
|
-
obtained = "\n".join(nx.generate_gexf(G))
|
|
365
|
-
assert expected == obtained
|
|
366
|
-
|
|
367
|
-
def test_edge_id_construct(self):
|
|
368
|
-
G = nx.Graph()
|
|
369
|
-
G.add_edges_from([(0, 1, {"id": 0}), (1, 2, {"id": 2}), (2, 3)])
|
|
370
|
-
|
|
371
|
-
expected = f"""<gexf xmlns="http://www.gexf.net/1.2draft" xmlns:xsi\
|
|
372
|
-
="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.\
|
|
373
|
-
gexf.net/1.2draft http://www.gexf.net/1.2draft/gexf.xsd" version="1.2">
|
|
374
|
-
<meta lastmodifieddate="{time.strftime("%Y-%m-%d")}">
|
|
375
|
-
<creator>NetworkX {nx.__version__}</creator>
|
|
376
|
-
</meta>
|
|
377
|
-
<graph defaultedgetype="undirected" mode="static" name="">
|
|
378
|
-
<nodes>
|
|
379
|
-
<node id="0" label="0" />
|
|
380
|
-
<node id="1" label="1" />
|
|
381
|
-
<node id="2" label="2" />
|
|
382
|
-
<node id="3" label="3" />
|
|
383
|
-
</nodes>
|
|
384
|
-
<edges>
|
|
385
|
-
<edge source="0" target="1" id="0" />
|
|
386
|
-
<edge source="1" target="2" id="2" />
|
|
387
|
-
<edge source="2" target="3" id="1" />
|
|
388
|
-
</edges>
|
|
389
|
-
</graph>
|
|
390
|
-
</gexf>"""
|
|
391
|
-
|
|
392
|
-
obtained = "\n".join(nx.generate_gexf(G))
|
|
393
|
-
assert expected == obtained
|
|
394
|
-
|
|
395
|
-
def test_numpy_type(self):
|
|
396
|
-
np = pytest.importorskip("numpy")
|
|
397
|
-
G = nx.path_graph(4)
|
|
398
|
-
nx.set_node_attributes(G, {n: n for n in np.arange(4)}, "number")
|
|
399
|
-
G[0][1]["edge-number"] = np.float64(1.1)
|
|
400
|
-
|
|
401
|
-
expected = f"""<gexf xmlns="http://www.gexf.net/1.2draft"\
|
|
402
|
-
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation\
|
|
403
|
-
="http://www.gexf.net/1.2draft http://www.gexf.net/1.2draft/gexf.xsd"\
|
|
404
|
-
version="1.2">
|
|
405
|
-
<meta lastmodifieddate="{time.strftime("%Y-%m-%d")}">
|
|
406
|
-
<creator>NetworkX {nx.__version__}</creator>
|
|
407
|
-
</meta>
|
|
408
|
-
<graph defaultedgetype="undirected" mode="static" name="">
|
|
409
|
-
<attributes mode="static" class="edge">
|
|
410
|
-
<attribute id="1" title="edge-number" type="float" />
|
|
411
|
-
</attributes>
|
|
412
|
-
<attributes mode="static" class="node">
|
|
413
|
-
<attribute id="0" title="number" type="int" />
|
|
414
|
-
</attributes>
|
|
415
|
-
<nodes>
|
|
416
|
-
<node id="0" label="0">
|
|
417
|
-
<attvalues>
|
|
418
|
-
<attvalue for="0" value="0" />
|
|
419
|
-
</attvalues>
|
|
420
|
-
</node>
|
|
421
|
-
<node id="1" label="1">
|
|
422
|
-
<attvalues>
|
|
423
|
-
<attvalue for="0" value="1" />
|
|
424
|
-
</attvalues>
|
|
425
|
-
</node>
|
|
426
|
-
<node id="2" label="2">
|
|
427
|
-
<attvalues>
|
|
428
|
-
<attvalue for="0" value="2" />
|
|
429
|
-
</attvalues>
|
|
430
|
-
</node>
|
|
431
|
-
<node id="3" label="3">
|
|
432
|
-
<attvalues>
|
|
433
|
-
<attvalue for="0" value="3" />
|
|
434
|
-
</attvalues>
|
|
435
|
-
</node>
|
|
436
|
-
</nodes>
|
|
437
|
-
<edges>
|
|
438
|
-
<edge source="0" target="1" id="0">
|
|
439
|
-
<attvalues>
|
|
440
|
-
<attvalue for="1" value="1.1" />
|
|
441
|
-
</attvalues>
|
|
442
|
-
</edge>
|
|
443
|
-
<edge source="1" target="2" id="1" />
|
|
444
|
-
<edge source="2" target="3" id="2" />
|
|
445
|
-
</edges>
|
|
446
|
-
</graph>
|
|
447
|
-
</gexf>"""
|
|
448
|
-
obtained = "\n".join(nx.generate_gexf(G))
|
|
449
|
-
assert expected == obtained
|
|
450
|
-
|
|
451
|
-
def test_bool(self):
|
|
452
|
-
G = nx.Graph()
|
|
453
|
-
G.add_node(1, testattr=True)
|
|
454
|
-
fh = io.BytesIO()
|
|
455
|
-
nx.write_gexf(G, fh)
|
|
456
|
-
fh.seek(0)
|
|
457
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
458
|
-
assert H.nodes[1]["testattr"]
|
|
459
|
-
|
|
460
|
-
# Test for NaN, INF and -INF
|
|
461
|
-
def test_specials(self):
|
|
462
|
-
from math import isnan
|
|
463
|
-
|
|
464
|
-
inf, nan = float("inf"), float("nan")
|
|
465
|
-
G = nx.Graph()
|
|
466
|
-
G.add_node(1, testattr=inf, strdata="inf", key="a")
|
|
467
|
-
G.add_node(2, testattr=nan, strdata="nan", key="b")
|
|
468
|
-
G.add_node(3, testattr=-inf, strdata="-inf", key="c")
|
|
469
|
-
|
|
470
|
-
fh = io.BytesIO()
|
|
471
|
-
nx.write_gexf(G, fh)
|
|
472
|
-
fh.seek(0)
|
|
473
|
-
filetext = fh.read()
|
|
474
|
-
fh.seek(0)
|
|
475
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
476
|
-
|
|
477
|
-
assert b"INF" in filetext
|
|
478
|
-
assert b"NaN" in filetext
|
|
479
|
-
assert b"-INF" in filetext
|
|
480
|
-
|
|
481
|
-
assert H.nodes[1]["testattr"] == inf
|
|
482
|
-
assert isnan(H.nodes[2]["testattr"])
|
|
483
|
-
assert H.nodes[3]["testattr"] == -inf
|
|
484
|
-
|
|
485
|
-
assert H.nodes[1]["strdata"] == "inf"
|
|
486
|
-
assert H.nodes[2]["strdata"] == "nan"
|
|
487
|
-
assert H.nodes[3]["strdata"] == "-inf"
|
|
488
|
-
|
|
489
|
-
assert H.nodes[1]["networkx_key"] == "a"
|
|
490
|
-
assert H.nodes[2]["networkx_key"] == "b"
|
|
491
|
-
assert H.nodes[3]["networkx_key"] == "c"
|
|
492
|
-
|
|
493
|
-
def test_simple_list(self):
|
|
494
|
-
G = nx.Graph()
|
|
495
|
-
list_value = [(1, 2, 3), (9, 1, 2)]
|
|
496
|
-
G.add_node(1, key=list_value)
|
|
497
|
-
fh = io.BytesIO()
|
|
498
|
-
nx.write_gexf(G, fh)
|
|
499
|
-
fh.seek(0)
|
|
500
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
501
|
-
assert H.nodes[1]["networkx_key"] == list_value
|
|
502
|
-
|
|
503
|
-
def test_dynamic_mode(self):
|
|
504
|
-
G = nx.Graph()
|
|
505
|
-
G.add_node(1, label="1", color="green")
|
|
506
|
-
G.graph["mode"] = "dynamic"
|
|
507
|
-
fh = io.BytesIO()
|
|
508
|
-
nx.write_gexf(G, fh)
|
|
509
|
-
fh.seek(0)
|
|
510
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
511
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
512
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
513
|
-
sorted(e) for e in H.edges()
|
|
514
|
-
)
|
|
515
|
-
|
|
516
|
-
def test_multigraph_with_missing_attributes(self):
|
|
517
|
-
G = nx.MultiGraph()
|
|
518
|
-
G.add_node(0, label="1", color="green")
|
|
519
|
-
G.add_node(1, label="2", color="green")
|
|
520
|
-
G.add_edge(0, 1, id="0", weight=3, type="undirected", start=0, end=1)
|
|
521
|
-
G.add_edge(0, 1, id="1", label="foo", start=0, end=1)
|
|
522
|
-
G.add_edge(0, 1)
|
|
523
|
-
fh = io.BytesIO()
|
|
524
|
-
nx.write_gexf(G, fh)
|
|
525
|
-
fh.seek(0)
|
|
526
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
527
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
528
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
529
|
-
sorted(e) for e in H.edges()
|
|
530
|
-
)
|
|
531
|
-
|
|
532
|
-
def test_missing_viz_attributes(self):
|
|
533
|
-
G = nx.Graph()
|
|
534
|
-
G.add_node(0, label="1", color="green")
|
|
535
|
-
G.nodes[0]["viz"] = {"size": 54}
|
|
536
|
-
G.nodes[0]["viz"]["position"] = {"x": 0, "y": 1, "z": 0}
|
|
537
|
-
G.nodes[0]["viz"]["color"] = {"r": 0, "g": 0, "b": 256}
|
|
538
|
-
G.nodes[0]["viz"]["shape"] = "http://random.url"
|
|
539
|
-
G.nodes[0]["viz"]["thickness"] = 2
|
|
540
|
-
fh = io.BytesIO()
|
|
541
|
-
nx.write_gexf(G, fh, version="1.1draft")
|
|
542
|
-
fh.seek(0)
|
|
543
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
544
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
545
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
546
|
-
sorted(e) for e in H.edges()
|
|
547
|
-
)
|
|
548
|
-
|
|
549
|
-
# Test missing alpha value for version >draft1.1 - set default alpha value
|
|
550
|
-
# to 1.0 instead of `None` when writing for better general compatibility
|
|
551
|
-
fh = io.BytesIO()
|
|
552
|
-
# G.nodes[0]["viz"]["color"] does not have an alpha value explicitly defined
|
|
553
|
-
# so the default is used instead
|
|
554
|
-
nx.write_gexf(G, fh, version="1.2draft")
|
|
555
|
-
fh.seek(0)
|
|
556
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
557
|
-
assert H.nodes[0]["viz"]["color"]["a"] == 1.0
|
|
558
|
-
|
|
559
|
-
# Second graph for the other branch
|
|
560
|
-
G = nx.Graph()
|
|
561
|
-
G.add_node(0, label="1", color="green")
|
|
562
|
-
G.nodes[0]["viz"] = {"size": 54}
|
|
563
|
-
G.nodes[0]["viz"]["position"] = {"x": 0, "y": 1, "z": 0}
|
|
564
|
-
G.nodes[0]["viz"]["color"] = {"r": 0, "g": 0, "b": 256, "a": 0.5}
|
|
565
|
-
G.nodes[0]["viz"]["shape"] = "ftp://random.url"
|
|
566
|
-
G.nodes[0]["viz"]["thickness"] = 2
|
|
567
|
-
fh = io.BytesIO()
|
|
568
|
-
nx.write_gexf(G, fh)
|
|
569
|
-
fh.seek(0)
|
|
570
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
571
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
572
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
573
|
-
sorted(e) for e in H.edges()
|
|
574
|
-
)
|
|
575
|
-
|
|
576
|
-
def test_slice_and_spell(self):
|
|
577
|
-
# Test spell first, so version = 1.2
|
|
578
|
-
G = nx.Graph()
|
|
579
|
-
G.add_node(0, label="1", color="green")
|
|
580
|
-
G.nodes[0]["spells"] = [(1, 2)]
|
|
581
|
-
fh = io.BytesIO()
|
|
582
|
-
nx.write_gexf(G, fh)
|
|
583
|
-
fh.seek(0)
|
|
584
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
585
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
586
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
587
|
-
sorted(e) for e in H.edges()
|
|
588
|
-
)
|
|
589
|
-
|
|
590
|
-
G = nx.Graph()
|
|
591
|
-
G.add_node(0, label="1", color="green")
|
|
592
|
-
G.nodes[0]["slices"] = [(1, 2)]
|
|
593
|
-
fh = io.BytesIO()
|
|
594
|
-
nx.write_gexf(G, fh, version="1.1draft")
|
|
595
|
-
fh.seek(0)
|
|
596
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
597
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
598
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
599
|
-
sorted(e) for e in H.edges()
|
|
600
|
-
)
|
|
601
|
-
|
|
602
|
-
def test_add_parent(self):
|
|
603
|
-
G = nx.Graph()
|
|
604
|
-
G.add_node(0, label="1", color="green", parents=[1, 2])
|
|
605
|
-
fh = io.BytesIO()
|
|
606
|
-
nx.write_gexf(G, fh)
|
|
607
|
-
fh.seek(0)
|
|
608
|
-
H = nx.read_gexf(fh, node_type=int)
|
|
609
|
-
assert sorted(G.nodes()) == sorted(H.nodes())
|
|
610
|
-
assert sorted(sorted(e) for e in G.edges()) == sorted(
|
|
611
|
-
sorted(e) for e in H.edges()
|
|
612
|
-
)
|