okstra 0.114.0 → 0.115.0

package/runtime/python/okstra_vendor/networkx/generators/tests/test_triads.py

@@ -1,15 +0,0 @@
-"""Unit tests for the :mod:`networkx.generators.triads` module."""
-
-import pytest
-
-from networkx import triad_graph
-
-
-def test_triad_graph():
-    G = triad_graph("030T")
-    assert [tuple(e) for e in ("ab", "ac", "cb")] == sorted(G.edges())
-
-
-def test_invalid_name():
-    with pytest.raises(ValueError):
-        triad_graph("bogus")

package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py

@@ -1,400 +0,0 @@
-from math import sqrt
-
-import pytest
-
-import networkx as nx
-
-np = pytest.importorskip("numpy")
-methods = ("tracemin_pcg", "tracemin_lu", "lanczos", "lobpcg")
-
-
-def test_algebraic_connectivity_tracemin_chol():
-    """Test that "tracemin_chol" raises an exception."""
-    pytest.importorskip("scipy")
-    G = nx.barbell_graph(5, 4)
-    with pytest.raises(nx.NetworkXError):
-        nx.algebraic_connectivity(G, method="tracemin_chol")
-
-
-def test_fiedler_vector_tracemin_chol():
-    """Test that "tracemin_chol" raises an exception."""
-    pytest.importorskip("scipy")
-    G = nx.barbell_graph(5, 4)
-    with pytest.raises(nx.NetworkXError):
-        nx.fiedler_vector(G, method="tracemin_chol")
-
-
-def test_spectral_ordering_tracemin_chol():
-    """Test that "tracemin_chol" raises an exception."""
-    pytest.importorskip("scipy")
-    G = nx.barbell_graph(5, 4)
-    with pytest.raises(nx.NetworkXError):
-        nx.spectral_ordering(G, method="tracemin_chol")
-
-
-def test_fiedler_vector_tracemin_unknown():
-    """Test that "tracemin_unknown" raises an exception."""
-    pytest.importorskip("scipy")
-    G = nx.barbell_graph(5, 4)
-    L = nx.laplacian_matrix(G)
-    X = np.asarray(np.random.normal(size=(1, L.shape[0]))).T
-    with pytest.raises(nx.NetworkXError, match="Unknown linear system solver"):
-        nx.linalg.algebraicconnectivity._tracemin_fiedler(
-            L, X, normalized=False, tol=1e-8, method="tracemin_unknown"
-        )
-
-
-def test_spectral_bisection():
-    pytest.importorskip("scipy")
-    G = nx.barbell_graph(3, 0)
-    C = nx.spectral_bisection(G)
-    assert C == ({0, 1, 2}, {3, 4, 5})
-
-    mapping = dict(enumerate("badfec"))
-    G = nx.relabel_nodes(G, mapping)
-    C = nx.spectral_bisection(G)
-    assert C == (
-        {mapping[0], mapping[1], mapping[2]},
-        {mapping[3], mapping[4], mapping[5]},
-    )
-
-
-def check_eigenvector(A, l, x):
-    nx = np.linalg.norm(x)
-    # Check zeroness.
-    assert nx != pytest.approx(0, abs=1e-07)
-    y = A @ x
-    ny = np.linalg.norm(y)
-    # Check collinearity.
-    assert x @ y == pytest.approx(nx * ny, abs=1e-7)
-    # Check eigenvalue.
-    assert ny == pytest.approx(l * nx, abs=1e-7)
-
-
-class TestAlgebraicConnectivity:
-    @pytest.mark.parametrize("method", methods)
-    def test_directed(self, method):
-        G = nx.DiGraph()
-        pytest.raises(
-            nx.NetworkXNotImplemented, nx.algebraic_connectivity, G, method=method
-        )
-        pytest.raises(nx.NetworkXNotImplemented, nx.fiedler_vector, G, method=method)
-
-    @pytest.mark.parametrize("method", methods)
-    def test_null_and_singleton(self, method):
-        G = nx.Graph()
-        pytest.raises(nx.NetworkXError, nx.algebraic_connectivity, G, method=method)
-        pytest.raises(nx.NetworkXError, nx.fiedler_vector, G, method=method)
-        G.add_edge(0, 0)
-        pytest.raises(nx.NetworkXError, nx.algebraic_connectivity, G, method=method)
-        pytest.raises(nx.NetworkXError, nx.fiedler_vector, G, method=method)
-
-    @pytest.mark.parametrize("method", methods)
-    def test_disconnected(self, method):
-        G = nx.Graph()
-        G.add_nodes_from(range(2))
-        assert nx.algebraic_connectivity(G) == 0
-        pytest.raises(nx.NetworkXError, nx.fiedler_vector, G, method=method)
-        G.add_edge(0, 1, weight=0)
-        assert nx.algebraic_connectivity(G) == 0
-        pytest.raises(nx.NetworkXError, nx.fiedler_vector, G, method=method)
-
-    def test_unrecognized_method(self):
-        pytest.importorskip("scipy")
-        G = nx.path_graph(4)
-        pytest.raises(nx.NetworkXError, nx.algebraic_connectivity, G, method="unknown")
-        pytest.raises(nx.NetworkXError, nx.fiedler_vector, G, method="unknown")
-
-    @pytest.mark.parametrize("method", methods)
-    def test_two_nodes(self, method):
-        pytest.importorskip("scipy")
-        G = nx.Graph()
-        G.add_edge(0, 1, weight=1)
-        A = nx.laplacian_matrix(G)
-        assert nx.algebraic_connectivity(G, tol=1e-12, method=method) == pytest.approx(
-            2, abs=1e-7
-        )
-        x = nx.fiedler_vector(G, tol=1e-12, method=method)
-        check_eigenvector(A, 2, x)
-
-    @pytest.mark.parametrize("method", methods)
-    def test_two_nodes_multigraph(self, method):
-        pytest.importorskip("scipy")
-        G = nx.MultiGraph()
-        G.add_edge(0, 0, spam=1e8)
-        G.add_edge(0, 1, spam=1)
-        G.add_edge(0, 1, spam=-2)
-        A = -3 * nx.laplacian_matrix(G, weight="spam")
-        assert nx.algebraic_connectivity(
-            G, weight="spam", tol=1e-12, method=method
-        ) == pytest.approx(6, abs=1e-7)
-        x = nx.fiedler_vector(G, weight="spam", tol=1e-12, method=method)
-        check_eigenvector(A, 6, x)
-
-    def test_abbreviation_of_method(self):
-        pytest.importorskip("scipy")
-        G = nx.path_graph(8)
-        A = nx.laplacian_matrix(G)
-        sigma = 2 - sqrt(2 + sqrt(2))
-        ac = nx.algebraic_connectivity(G, tol=1e-12, method="tracemin")
-        assert ac == pytest.approx(sigma, abs=1e-7)
-        x = nx.fiedler_vector(G, tol=1e-12, method="tracemin")
-        check_eigenvector(A, sigma, x)
-
-    @pytest.mark.parametrize("method", methods)
-    def test_path(self, method):
-        pytest.importorskip("scipy")
-        G = nx.path_graph(8)
-        A = nx.laplacian_matrix(G)
-        sigma = 2 - sqrt(2 + sqrt(2))
-        ac = nx.algebraic_connectivity(G, tol=1e-12, method=method)
-        assert ac == pytest.approx(sigma, abs=1e-7)
-        x = nx.fiedler_vector(G, tol=1e-12, method=method)
-        check_eigenvector(A, sigma, x)
-
-    @pytest.mark.parametrize("method", methods)
-    def test_problematic_graph_issue_2381(self, method):
-        pytest.importorskip("scipy")
-        G = nx.path_graph(4)
-        G.add_edges_from([(4, 2), (5, 1)])
-        A = nx.laplacian_matrix(G)
-        sigma = 0.438447187191
-        ac = nx.algebraic_connectivity(G, tol=1e-12, method=method)
-        assert ac == pytest.approx(sigma, abs=1e-7)
-        x = nx.fiedler_vector(G, tol=1e-12, method=method)
-        check_eigenvector(A, sigma, x)
-
-    @pytest.mark.parametrize("method", methods)
-    def test_cycle(self, method):
-        pytest.importorskip("scipy")
-        G = nx.cycle_graph(8)
-        A = nx.laplacian_matrix(G)
-        sigma = 2 - sqrt(2)
-        ac = nx.algebraic_connectivity(G, tol=1e-12, method=method)
-        assert ac == pytest.approx(sigma, abs=1e-7)
-        x = nx.fiedler_vector(G, tol=1e-12, method=method)
-        check_eigenvector(A, sigma, x)
-
-    @pytest.mark.parametrize("method", methods)
-    def test_seed_argument(self, method):
-        pytest.importorskip("scipy")
-        G = nx.cycle_graph(8)
-        A = nx.laplacian_matrix(G)
-        sigma = 2 - sqrt(2)
-        ac = nx.algebraic_connectivity(G, tol=1e-12, method=method, seed=1)
-        assert ac == pytest.approx(sigma, abs=1e-7)
-        x = nx.fiedler_vector(G, tol=1e-12, method=method, seed=1)
-        check_eigenvector(A, sigma, x)
-
-    @pytest.mark.parametrize(
-        ("normalized", "sigma", "laplacian_fn"),
-        (
-            (False, 0.2434017461399311, nx.laplacian_matrix),
-            (True, 0.08113391537997749, nx.normalized_laplacian_matrix),
-        ),
-    )
-    @pytest.mark.parametrize("method", methods)
-    def test_buckminsterfullerene(self, normalized, sigma, laplacian_fn, method):
-        pytest.importorskip("scipy")
-        G = nx.Graph(
-            [
-                (1, 10),
-                (1, 41),
-                (1, 59),
-                (2, 12),
-                (2, 42),
-                (2, 60),
-                (3, 6),
-                (3, 43),
-                (3, 57),
-                (4, 8),
-                (4, 44),
-                (4, 58),
-                (5, 13),
-                (5, 56),
-                (5, 57),
-                (6, 10),
-                (6, 31),
-                (7, 14),
-                (7, 56),
-                (7, 58),
-                (8, 12),
-                (8, 32),
-                (9, 23),
-                (9, 53),
-                (9, 59),
-                (10, 15),
-                (11, 24),
-                (11, 53),
-                (11, 60),
-                (12, 16),
-                (13, 14),
-                (13, 25),
-                (14, 26),
-                (15, 27),
-                (15, 49),
-                (16, 28),
-                (16, 50),
-                (17, 18),
-                (17, 19),
-                (17, 54),
-                (18, 20),
-                (18, 55),
-                (19, 23),
-                (19, 41),
-                (20, 24),
-                (20, 42),
-                (21, 31),
-                (21, 33),
-                (21, 57),
-                (22, 32),
-                (22, 34),
-                (22, 58),
-                (23, 24),
-                (25, 35),
-                (25, 43),
-                (26, 36),
-                (26, 44),
-                (27, 51),
-                (27, 59),
-                (28, 52),
-                (28, 60),
-                (29, 33),
-                (29, 34),
-                (29, 56),
-                (30, 51),
-                (30, 52),
-                (30, 53),
-                (31, 47),
-                (32, 48),
-                (33, 45),
-                (34, 46),
-                (35, 36),
-                (35, 37),
-                (36, 38),
-                (37, 39),
-                (37, 49),
-                (38, 40),
-                (38, 50),
-                (39, 40),
-                (39, 51),
-                (40, 52),
-                (41, 47),
-                (42, 48),
-                (43, 49),
-                (44, 50),
-                (45, 46),
-                (45, 54),
-                (46, 55),
-                (47, 54),
-                (48, 55),
-            ]
-        )
-        A = laplacian_fn(G)
-        try:
-            assert nx.algebraic_connectivity(
-                G, normalized=normalized, tol=1e-12, method=method
-            ) == pytest.approx(sigma, abs=1e-7)
-            x = nx.fiedler_vector(G, normalized=normalized, tol=1e-12, method=method)
-            check_eigenvector(A, sigma, x)
-        except nx.NetworkXError as err:
-            if err.args not in (
-                ("Cholesky solver unavailable.",),
-                ("LU solver unavailable.",),
-            ):
-                raise
-
-
-class TestSpectralOrdering:
-    _graphs = (nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph)
-
-    @pytest.mark.parametrize("graph", _graphs)
-    def test_nullgraph(self, graph):
-        G = graph()
-        pytest.raises(nx.NetworkXError, nx.spectral_ordering, G)
-
-    @pytest.mark.parametrize("graph", _graphs)
-    def test_singleton(self, graph):
-        G = graph()
-        G.add_node("x")
-        assert nx.spectral_ordering(G) == ["x"]
-        G.add_edge("x", "x", weight=33)
-        G.add_edge("x", "x", weight=33)
-        assert nx.spectral_ordering(G) == ["x"]
-
-    def test_unrecognized_method(self):
-        G = nx.path_graph(4)
-        pytest.raises(nx.NetworkXError, nx.spectral_ordering, G, method="unknown")
-
-    @pytest.mark.parametrize("method", methods)
-    def test_three_nodes(self, method):
-        pytest.importorskip("scipy")
-        G = nx.Graph()
-        G.add_weighted_edges_from([(1, 2, 1), (1, 3, 2), (2, 3, 1)], weight="spam")
-        order = nx.spectral_ordering(G, weight="spam", method=method)
-        assert set(order) == set(G)
-        assert {1, 3} in (set(order[:-1]), set(order[1:]))
-
-    @pytest.mark.parametrize("method", methods)
-    def test_three_nodes_multigraph(self, method):
-        pytest.importorskip("scipy")
-        G = nx.MultiDiGraph()
-        G.add_weighted_edges_from([(1, 2, 1), (1, 3, 2), (2, 3, 1), (2, 3, 2)])
-        order = nx.spectral_ordering(G, method=method)
-        assert set(order) == set(G)
-        assert {2, 3} in (set(order[:-1]), set(order[1:]))
-
-    @pytest.mark.parametrize("method", methods)
-    def test_path(self, method):
-        pytest.importorskip("scipy")
-        path = list(range(10))
-        np.random.shuffle(path)
-        G = nx.Graph()
-        nx.add_path(G, path)
-        order = nx.spectral_ordering(G, method=method)
-        assert order in [path, list(reversed(path))]
-
-    @pytest.mark.parametrize("method", methods)
-    def test_seed_argument(self, method):
-        pytest.importorskip("scipy")
-        path = list(range(10))
-        np.random.shuffle(path)
-        G = nx.Graph()
-        nx.add_path(G, path)
-        order = nx.spectral_ordering(G, method=method, seed=1)
-        assert order in [path, list(reversed(path))]
-
-    @pytest.mark.parametrize("method", methods)
-    def test_disconnected(self, method):
-        pytest.importorskip("scipy")
-        G = nx.Graph()
-        nx.add_path(G, range(0, 10, 2))
-        nx.add_path(G, range(1, 10, 2))
-        order = nx.spectral_ordering(G, method=method)
-        assert set(order) == set(G)
-        seqs = [
-            list(range(0, 10, 2)),
-            list(range(8, -1, -2)),
-            list(range(1, 10, 2)),
-            list(range(9, -1, -2)),
-        ]
-        assert order[:5] in seqs
-        assert order[5:] in seqs
-
-    @pytest.mark.parametrize(
-        ("normalized", "expected_order"),
-        (
-            (False, [[1, 2, 0, 3, 4, 5, 6, 9, 7, 8], [8, 7, 9, 6, 5, 4, 3, 0, 2, 1]]),
-            (True, [[1, 2, 3, 0, 4, 5, 9, 6, 7, 8], [8, 7, 6, 9, 5, 4, 0, 3, 2, 1]]),
-        ),
-    )
-    @pytest.mark.parametrize("method", methods)
-    def test_cycle(self, normalized, expected_order, method):
-        pytest.importorskip("scipy")
-        path = list(range(10))
-        G = nx.Graph()
-        nx.add_path(G, path, weight=5)
-        G.add_edge(path[-1], path[0], weight=1)
-        A = nx.laplacian_matrix(G).todense()
-        order = nx.spectral_ordering(G, normalized=normalized, method=method)
-        assert order in expected_order

package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py

@@ -1,108 +0,0 @@
-import pytest
-
-import networkx as nx
-
-np = pytest.importorskip("numpy")
-
-
-def test_attr_matrix():
-    G = nx.Graph()
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 2, thickness=2)
-    G.add_edge(1, 2, thickness=3)
-
-    def node_attr(u):
-        return G.nodes[u].get("size", 0.5) * 3
-
-    def edge_attr(u, v):
-        return G[u][v].get("thickness", 0.5)
-
-    M = nx.attr_matrix(G, edge_attr=edge_attr, node_attr=node_attr)
-    np.testing.assert_equal(M[0], np.array([[6.0]]))
-    assert M[1] == [1.5]
-
-
-def test_attr_matrix_directed():
-    G = nx.DiGraph()
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 2, thickness=2)
-    G.add_edge(1, 2, thickness=3)
-    M = nx.attr_matrix(G, rc_order=[0, 1, 2])
-    # fmt: off
-    data = np.array(
-        [[0., 1., 1.],
-         [0., 0., 1.],
-         [0., 0., 0.]]
-    )
-    # fmt: on
-    np.testing.assert_equal(M, np.array(data))
-
-
-def test_attr_matrix_multigraph():
-    G = nx.MultiGraph()
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 2, thickness=2)
-    G.add_edge(1, 2, thickness=3)
-    M = nx.attr_matrix(G, rc_order=[0, 1, 2])
-    # fmt: off
-    data = np.array(
-        [[0., 3., 1.],
-         [3., 0., 1.],
-         [1., 1., 0.]]
-    )
-    # fmt: on
-    np.testing.assert_equal(M, np.array(data))
-    M = nx.attr_matrix(G, edge_attr="weight", rc_order=[0, 1, 2])
-    # fmt: off
-    data = np.array(
-        [[0., 9., 1.],
-         [9., 0., 1.],
-         [1., 1., 0.]]
-    )
-    # fmt: on
-    np.testing.assert_equal(M, np.array(data))
-    M = nx.attr_matrix(G, edge_attr="thickness", rc_order=[0, 1, 2])
-    # fmt: off
-    data = np.array(
-        [[0., 3., 2.],
-         [3., 0., 3.],
-         [2., 3., 0.]]
-    )
-    # fmt: on
-    np.testing.assert_equal(M, np.array(data))
-
-
-def test_attr_sparse_matrix():
-    pytest.importorskip("scipy")
-    G = nx.Graph()
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 2, thickness=2)
-    G.add_edge(1, 2, thickness=3)
-    M = nx.attr_sparse_matrix(G)
-    mtx = M[0]
-    data = np.ones((3, 3), float)
-    np.fill_diagonal(data, 0)
-    np.testing.assert_equal(mtx.todense(), np.array(data))
-    assert M[1] == [0, 1, 2]
-
-
-def test_attr_sparse_matrix_directed():
-    pytest.importorskip("scipy")
-    G = nx.DiGraph()
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 1, thickness=1, weight=3)
-    G.add_edge(0, 2, thickness=2)
-    G.add_edge(1, 2, thickness=3)
-    M = nx.attr_sparse_matrix(G, rc_order=[0, 1, 2])
-    # fmt: off
-    data = np.array(
-        [[0., 1., 1.],
-         [0., 0., 1.],
-         [0., 0., 0.]]
-    )
-    # fmt: on
-    np.testing.assert_equal(M.todense(), np.array(data))

package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py

@@ -1,40 +0,0 @@
-import pytest
-
-import networkx as nx
-
-np = pytest.importorskip("numpy")
-pytest.importorskip("scipy")
-
-
-class TestBetheHessian:
-    @classmethod
-    def setup_class(cls):
-        deg = [3, 2, 2, 1, 0]
-        cls.G = nx.havel_hakimi_graph(deg)
-        cls.P = nx.path_graph(3)
-
-    def test_bethe_hessian(self):
-        "Bethe Hessian matrix"
-        # fmt: off
-        H = np.array([[4, -2, 0],
-                      [-2, 5, -2],
-                      [0, -2, 4]])
-        # fmt: on
-        permutation = [2, 0, 1]
-        # Bethe Hessian gives expected form
-        np.testing.assert_equal(nx.bethe_hessian_matrix(self.P, r=2).todense(), H)
-        # nodelist is correctly implemented
-        np.testing.assert_equal(
-            nx.bethe_hessian_matrix(self.P, r=2, nodelist=permutation).todense(),
-            H[np.ix_(permutation, permutation)],
-        )
-        # Equal to Laplacian matrix when r=1
-        np.testing.assert_equal(
-            nx.bethe_hessian_matrix(self.G, r=1).todense(),
-            nx.laplacian_matrix(self.G).todense(),
-        )
-        # Correct default for the regularizer r
-        np.testing.assert_equal(
-            nx.bethe_hessian_matrix(self.G).todense(),
-            nx.bethe_hessian_matrix(self.G, r=1.25).todense(),
-        )