okstra 0.113.0 → 0.115.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (348) hide show
  1. package/README.kr.md +2 -2
  2. package/README.md +2 -2
  3. package/docs/for-ai/README.md +2 -2
  4. package/docs/for-ai/skills/{okstra-brief.md → okstra-brief-gen.md} +3 -3
  5. package/docs/for-ai/skills/okstra-inspect.md +1 -1
  6. package/docs/kr/architecture.md +11 -11
  7. package/docs/kr/cli.md +1 -1
  8. package/docs/kr/follow-ups/2026-07-10-final-report-option-3.md +51 -0
  9. package/docs/project-structure-overview.md +2 -2
  10. package/package.json +1 -1
  11. package/runtime/BUILD.json +2 -2
  12. package/runtime/agents/workers/report-writer-worker.md +1 -0
  13. package/runtime/prompts/lead/context-loader.md +2 -2
  14. package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
  15. package/runtime/prompts/profiles/_common-contract.md +3 -3
  16. package/runtime/prompts/profiles/implementation-planning.md +1 -1
  17. package/runtime/prompts/profiles/requirements-discovery.md +2 -2
  18. package/runtime/python/okstra_ctl/fix_cycles.py +1 -1
  19. package/runtime/python/okstra_ctl/implementation_stage.py +46 -39
  20. package/runtime/python/okstra_ctl/report_views.py +151 -12
  21. package/runtime/python/okstra_ctl/run.py +24 -24
  22. package/runtime/python/okstra_ctl/wizard.py +3 -3
  23. package/runtime/python/okstra_ctl/worktree.py +1 -1
  24. package/runtime/python/okstra_token_usage/claude.py +58 -19
  25. package/runtime/python/okstra_token_usage/collect.py +3 -1
  26. package/runtime/python/okstra_vendor/__init__.py +3 -0
  27. package/runtime/schemas/final-report-v1.0.schema.json +20 -0
  28. package/runtime/skills/{okstra-brief → okstra-brief-gen}/SKILL.md +6 -6
  29. package/runtime/skills/{okstra-brief → okstra-brief-gen}/references/reporter-confirmations.md +1 -1
  30. package/runtime/skills/{okstra-brief → okstra-brief-gen}/references/tracker-recursion.md +1 -1
  31. package/runtime/skills/okstra-inspect/SKILL.md +2 -2
  32. package/runtime/templates/reports/brief.template.md +2 -2
  33. package/runtime/templates/reports/final-report.template.md +14 -0
  34. package/runtime/templates/reports/i18n/en.json +23 -12
  35. package/runtime/templates/reports/i18n/ko.json +23 -12
  36. package/runtime/templates/reports/report.css +55 -0
  37. package/runtime/templates/reports/report.js +53 -1
  38. package/runtime/validators/validate-brief.py +5 -5
  39. package/runtime/validators/validate-brief.sh +1 -1
  40. package/src/commands/lifecycle/uninstall.mjs +2 -1
  41. package/src/lib/skill-catalog.mjs +2 -1
  42. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  43. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +0 -41
  44. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +0 -112
  45. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +0 -199
  46. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +0 -146
  47. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +0 -59
  48. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +0 -78
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +0 -303
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +0 -8
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +0 -94
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +0 -31
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +0 -306
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +0 -1014
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +0 -274
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +0 -68
  57. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +0 -81
  59. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +0 -143
  60. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +0 -122
  61. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +0 -174
  62. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +0 -107
  63. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +0 -87
  64. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +0 -125
  66. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +0 -192
  67. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +0 -84
  68. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +0 -33
  69. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +0 -240
  70. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +0 -334
  71. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +0 -407
  72. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +0 -218
  73. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +0 -327
  74. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +0 -138
  75. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +0 -409
  76. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +0 -35
  77. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +0 -80
  78. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +0 -923
  80. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +0 -354
  81. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +0 -274
  82. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +0 -259
  83. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +0 -147
  84. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +0 -43
  85. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +0 -144
  86. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +0 -73
  87. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +0 -186
  88. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +0 -277
  89. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +0 -122
  90. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +0 -345
  91. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +0 -220
  92. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +0 -344
  93. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +0 -87
  94. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +0 -140
  95. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +0 -82
  96. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +0 -110
  97. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +0 -302
  98. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +0 -64
  99. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +0 -863
  101. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +0 -147
  103. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +0 -157
  104. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +0 -85
  105. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +0 -106
  106. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +0 -91
  107. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +0 -241
  108. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +0 -138
  109. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +0 -76
  110. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +0 -264
  111. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +0 -152
  112. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +0 -340
  113. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +0 -139
  114. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +0 -26
  115. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +0 -70
  117. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +0 -248
  118. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +0 -138
  119. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +0 -55
  120. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +0 -193
  121. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +0 -96
  122. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +0 -421
  124. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +0 -309
  125. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +0 -249
  126. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +0 -502
  127. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +0 -488
  128. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +0 -323
  129. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +0 -280
  130. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +0 -102
  131. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/__init__.py +0 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gl1.gpickle.bz2 +0 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gw1.gpickle.bz2 +0 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/netgen-2.gpickle.bz2 +0 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_gomory_hu.py +0 -128
  136. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow.py +0 -573
  137. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow_large_graph.py +0 -155
  138. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_mincost.py +0 -475
  139. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_networksimplex.py +0 -481
  140. package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/wlm3.gpickle.bz2 +0 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/__init__.py +0 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.A99 +0 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.B99 +0 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.A99 +0 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.B99 +0 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_ismags.py +0 -719
  147. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphism.py +0 -103
  148. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphvf2.py +0 -490
  149. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_match_helpers.py +0 -64
  150. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_temporalisomorphvf2.py +0 -212
  151. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_tree_isomorphism.py +0 -202
  152. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp.py +0 -1655
  153. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp_helpers.py +0 -3118
  154. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2userfunc.py +0 -196
  155. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/__init__.py +0 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_hits.py +0 -77
  157. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_pagerank.py +0 -213
  158. package/runtime/python/okstra_vendor/networkx/algorithms/minors/tests/test_contraction.py +0 -544
  159. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/__init__.py +0 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_all.py +0 -328
  161. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_binary.py +0 -451
  162. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_product.py +0 -491
  163. package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_unary.py +0 -55
  164. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/__init__.py +0 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_astar.py +0 -254
  166. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense.py +0 -212
  167. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense_numpy.py +0 -88
  168. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_generic.py +0 -511
  169. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_unweighted.py +0 -149
  170. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_weighted.py +0 -983
  171. package/runtime/python/okstra_vendor/networkx/algorithms/tests/__init__.py +0 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_asteroidal.py +0 -23
  173. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_boundary.py +0 -154
  174. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_bridges.py +0 -144
  175. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_broadcasting.py +0 -109
  176. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chains.py +0 -136
  177. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chordal.py +0 -129
  178. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_clique.py +0 -300
  179. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cluster.py +0 -678
  180. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_communicability.py +0 -80
  181. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_core.py +0 -266
  182. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_covering.py +0 -85
  183. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cuts.py +0 -171
  184. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cycles.py +0 -984
  185. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_d_separation.py +0 -340
  186. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dag.py +0 -835
  187. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_measures.py +0 -831
  188. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_regular.py +0 -85
  189. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominance.py +0 -299
  190. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominating.py +0 -115
  191. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_efficiency.py +0 -58
  192. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_euler.py +0 -314
  193. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graph_hashing.py +0 -872
  194. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graphical.py +0 -163
  195. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hierarchy.py +0 -46
  196. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hybrid.py +0 -24
  197. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_isolate.py +0 -26
  198. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_link_prediction.py +0 -615
  199. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_lowest_common_ancestors.py +0 -459
  200. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_matching.py +0 -556
  201. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_max_weight_clique.py +0 -179
  202. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_mis.py +0 -62
  203. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_moral.py +0 -15
  204. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_node_classification.py +0 -140
  205. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_non_randomness.py +0 -60
  206. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_perfect_graph.py +0 -27
  207. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planar_drawing.py +0 -274
  208. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planarity.py +0 -556
  209. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_polynomials.py +0 -57
  210. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_reciprocity.py +0 -37
  211. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_regular.py +0 -88
  212. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_richclub.py +0 -149
  213. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_similarity.py +0 -1158
  214. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_simple_paths.py +0 -803
  215. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smallworld.py +0 -76
  216. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smetric.py +0 -8
  217. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_sparsifiers.py +0 -138
  218. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_structuralholes.py +0 -191
  219. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_summarization.py +0 -642
  220. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_swap.py +0 -179
  221. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_threshold.py +0 -270
  222. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_time_dependent.py +0 -431
  223. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_tournament.py +0 -161
  224. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_triads.py +0 -248
  225. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_vitality.py +0 -41
  226. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_voronoi.py +0 -103
  227. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_walks.py +0 -54
  228. package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_wiener.py +0 -157
  229. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/__init__.py +0 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_beamsearch.py +0 -25
  231. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_bfs.py +0 -203
  232. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_dfs.py +0 -307
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@@ -1,349 +0,0 @@
1
- import pytest
2
-
3
- import networkx as nx
4
- from networkx.utils import edges_equal, graphs_equal, nodes_equal
5
-
6
- np = pytest.importorskip("numpy")
7
- pd = pytest.importorskip("pandas")
8
-
9
-
10
- class TestConvertPandas:
11
- def setup_method(self):
12
- self.rng = np.random.RandomState(seed=5)
13
- ints = self.rng.randint(1, 11, size=(3, 2))
14
- a = ["A", "B", "C"]
15
- b = ["D", "A", "E"]
16
- df = pd.DataFrame(ints, columns=["weight", "cost"])
17
- df[0] = a # Column label 0 (int)
18
- df["b"] = b # Column label 'b' (str)
19
- self.df = df
20
-
21
- mdf = pd.DataFrame([[4, 16, "A", "D"]], columns=["weight", "cost", 0, "b"])
22
- self.mdf = pd.concat([df, mdf])
23
-
24
- def test_exceptions(self):
25
- G = pd.DataFrame(["a"]) # adj
26
- pytest.raises(nx.NetworkXError, nx.to_networkx_graph, G)
27
- G = pd.DataFrame(["a", 0.0]) # elist
28
- pytest.raises(nx.NetworkXError, nx.to_networkx_graph, G)
29
- df = pd.DataFrame([[1, 1], [1, 0]], dtype=int, index=[1, 2], columns=["a", "b"])
30
- pytest.raises(nx.NetworkXError, nx.from_pandas_adjacency, df)
31
-
32
- def test_from_edgelist_all_attr(self):
33
- Gtrue = nx.Graph(
34
- [
35
- ("E", "C", {"cost": 9, "weight": 10}),
36
- ("B", "A", {"cost": 1, "weight": 7}),
37
- ("A", "D", {"cost": 7, "weight": 4}),
38
- ]
39
- )
40
- G = nx.from_pandas_edgelist(self.df, 0, "b", True)
41
- assert graphs_equal(G, Gtrue)
42
- # MultiGraph
43
- MGtrue = nx.MultiGraph(Gtrue)
44
- MGtrue.add_edge("A", "D", cost=16, weight=4)
45
- MG = nx.from_pandas_edgelist(self.mdf, 0, "b", True, nx.MultiGraph())
46
- assert graphs_equal(MG, MGtrue)
47
-
48
- def test_from_edgelist_multi_attr(self):
49
- Gtrue = nx.Graph(
50
- [
51
- ("E", "C", {"cost": 9, "weight": 10}),
52
- ("B", "A", {"cost": 1, "weight": 7}),
53
- ("A", "D", {"cost": 7, "weight": 4}),
54
- ]
55
- )
56
- G = nx.from_pandas_edgelist(self.df, 0, "b", ["weight", "cost"])
57
- assert graphs_equal(G, Gtrue)
58
-
59
- def test_from_edgelist_multi_attr_incl_target(self):
60
- Gtrue = nx.Graph(
61
- [
62
- ("E", "C", {0: "C", "b": "E", "weight": 10}),
63
- ("B", "A", {0: "B", "b": "A", "weight": 7}),
64
- ("A", "D", {0: "A", "b": "D", "weight": 4}),
65
- ]
66
- )
67
- G = nx.from_pandas_edgelist(self.df, 0, "b", [0, "b", "weight"])
68
- assert graphs_equal(G, Gtrue)
69
-
70
- def test_from_edgelist_multidigraph_and_edge_attr(self):
71
- # example from issue #2374
72
- edges = [
73
- ("X1", "X4", {"Co": "zA", "Mi": 0, "St": "X1"}),
74
- ("X1", "X4", {"Co": "zB", "Mi": 54, "St": "X2"}),
75
- ("X1", "X4", {"Co": "zB", "Mi": 49, "St": "X3"}),
76
- ("X1", "X4", {"Co": "zB", "Mi": 44, "St": "X4"}),
77
- ("Y1", "Y3", {"Co": "zC", "Mi": 0, "St": "Y1"}),
78
- ("Y1", "Y3", {"Co": "zC", "Mi": 34, "St": "Y2"}),
79
- ("Y1", "Y3", {"Co": "zC", "Mi": 29, "St": "X2"}),
80
- ("Y1", "Y3", {"Co": "zC", "Mi": 24, "St": "Y3"}),
81
- ("Z1", "Z3", {"Co": "zD", "Mi": 0, "St": "Z1"}),
82
- ("Z1", "Z3", {"Co": "zD", "Mi": 14, "St": "X3"}),
83
- ]
84
- Gtrue = nx.MultiDiGraph(edges)
85
- data = {
86
- "O": ["X1", "X1", "X1", "X1", "Y1", "Y1", "Y1", "Y1", "Z1", "Z1"],
87
- "D": ["X4", "X4", "X4", "X4", "Y3", "Y3", "Y3", "Y3", "Z3", "Z3"],
88
- "St": ["X1", "X2", "X3", "X4", "Y1", "Y2", "X2", "Y3", "Z1", "X3"],
89
- "Co": ["zA", "zB", "zB", "zB", "zC", "zC", "zC", "zC", "zD", "zD"],
90
- "Mi": [0, 54, 49, 44, 0, 34, 29, 24, 0, 14],
91
- }
92
- df = pd.DataFrame.from_dict(data)
93
- G1 = nx.from_pandas_edgelist(
94
- df, source="O", target="D", edge_attr=True, create_using=nx.MultiDiGraph
95
- )
96
- G2 = nx.from_pandas_edgelist(
97
- df,
98
- source="O",
99
- target="D",
100
- edge_attr=["St", "Co", "Mi"],
101
- create_using=nx.MultiDiGraph,
102
- )
103
- assert graphs_equal(G1, Gtrue)
104
- assert graphs_equal(G2, Gtrue)
105
-
106
- def test_from_edgelist_one_attr(self):
107
- Gtrue = nx.Graph(
108
- [
109
- ("E", "C", {"weight": 10}),
110
- ("B", "A", {"weight": 7}),
111
- ("A", "D", {"weight": 4}),
112
- ]
113
- )
114
- G = nx.from_pandas_edgelist(self.df, 0, "b", "weight")
115
- assert graphs_equal(G, Gtrue)
116
-
117
- def test_from_edgelist_int_attr_name(self):
118
- # note: this also tests that edge_attr can be `source`
119
- Gtrue = nx.Graph(
120
- [("E", "C", {0: "C"}), ("B", "A", {0: "B"}), ("A", "D", {0: "A"})]
121
- )
122
- G = nx.from_pandas_edgelist(self.df, 0, "b", 0)
123
- assert graphs_equal(G, Gtrue)
124
-
125
- def test_from_edgelist_invalid_attr(self):
126
- pytest.raises(
127
- nx.NetworkXError, nx.from_pandas_edgelist, self.df, 0, "b", "misspell"
128
- )
129
- pytest.raises(nx.NetworkXError, nx.from_pandas_edgelist, self.df, 0, "b", 1)
130
- # see Issue #3562
131
- edgeframe = pd.DataFrame([[0, 1], [1, 2], [2, 0]], columns=["s", "t"])
132
- pytest.raises(
133
- nx.NetworkXError, nx.from_pandas_edgelist, edgeframe, "s", "t", True
134
- )
135
- pytest.raises(
136
- nx.NetworkXError, nx.from_pandas_edgelist, edgeframe, "s", "t", "weight"
137
- )
138
- pytest.raises(
139
- nx.NetworkXError,
140
- nx.from_pandas_edgelist,
141
- edgeframe,
142
- "s",
143
- "t",
144
- ["weight", "size"],
145
- )
146
-
147
- def test_from_edgelist_no_attr(self):
148
- Gtrue = nx.Graph([("E", "C", {}), ("B", "A", {}), ("A", "D", {})])
149
- G = nx.from_pandas_edgelist(self.df, 0, "b")
150
- assert graphs_equal(G, Gtrue)
151
-
152
- def test_from_edgelist(self):
153
- # Pandas DataFrame
154
- G = nx.cycle_graph(10)
155
- G.add_weighted_edges_from((u, v, u) for u, v in list(G.edges))
156
-
157
- edgelist = nx.to_edgelist(G)
158
- source = [s for s, t, d in edgelist]
159
- target = [t for s, t, d in edgelist]
160
- weight = [d["weight"] for s, t, d in edgelist]
161
- edges = pd.DataFrame({"source": source, "target": target, "weight": weight})
162
-
163
- GG = nx.from_pandas_edgelist(edges, edge_attr="weight")
164
- assert nodes_equal(G.nodes(), GG.nodes())
165
- assert edges_equal(G.edges(), GG.edges())
166
- GW = nx.to_networkx_graph(edges, create_using=nx.Graph)
167
- assert nodes_equal(G.nodes(), GW.nodes())
168
- assert edges_equal(G.edges(), GW.edges())
169
-
170
- def test_to_edgelist_default_source_or_target_col_exists(self):
171
- G = nx.path_graph(10)
172
- G.add_weighted_edges_from((u, v, u) for u, v in list(G.edges))
173
- nx.set_edge_attributes(G, 0, name="source")
174
- pytest.raises(nx.NetworkXError, nx.to_pandas_edgelist, G)
175
-
176
- # drop source column to test an exception raised for the target column
177
- for u, v, d in G.edges(data=True):
178
- d.pop("source", None)
179
-
180
- nx.set_edge_attributes(G, 0, name="target")
181
- pytest.raises(nx.NetworkXError, nx.to_pandas_edgelist, G)
182
-
183
- def test_to_edgelist_custom_source_or_target_col_exists(self):
184
- G = nx.path_graph(10)
185
- G.add_weighted_edges_from((u, v, u) for u, v in list(G.edges))
186
- nx.set_edge_attributes(G, 0, name="source_col_name")
187
- pytest.raises(
188
- nx.NetworkXError, nx.to_pandas_edgelist, G, source="source_col_name"
189
- )
190
-
191
- # drop source column to test an exception raised for the target column
192
- for u, v, d in G.edges(data=True):
193
- d.pop("source_col_name", None)
194
-
195
- nx.set_edge_attributes(G, 0, name="target_col_name")
196
- pytest.raises(
197
- nx.NetworkXError, nx.to_pandas_edgelist, G, target="target_col_name"
198
- )
199
-
200
- def test_to_edgelist_edge_key_col_exists(self):
201
- G = nx.path_graph(10, create_using=nx.MultiGraph)
202
- G.add_weighted_edges_from((u, v, u) for u, v in list(G.edges()))
203
- nx.set_edge_attributes(G, 0, name="edge_key_name")
204
- pytest.raises(
205
- nx.NetworkXError, nx.to_pandas_edgelist, G, edge_key="edge_key_name"
206
- )
207
-
208
- def test_from_adjacency(self):
209
- nodelist = [1, 2]
210
- dftrue = pd.DataFrame(
211
- [[1, 1], [1, 0]], dtype=int, index=nodelist, columns=nodelist
212
- )
213
- G = nx.Graph([(1, 1), (1, 2)])
214
- df = nx.to_pandas_adjacency(G, dtype=int)
215
- pd.testing.assert_frame_equal(df, dftrue)
216
-
217
- @pytest.mark.parametrize("graph", [nx.Graph, nx.MultiGraph])
218
- def test_roundtrip(self, graph):
219
- # edgelist
220
- Gtrue = graph([(1, 1), (1, 2)])
221
- df = nx.to_pandas_edgelist(Gtrue)
222
- G = nx.from_pandas_edgelist(df, create_using=graph)
223
- assert graphs_equal(Gtrue, G)
224
- # adjacency
225
- adj = {1: {1: {"weight": 1}, 2: {"weight": 1}}, 2: {1: {"weight": 1}}}
226
- Gtrue = graph(adj)
227
- df = nx.to_pandas_adjacency(Gtrue, dtype=int)
228
- G = nx.from_pandas_adjacency(df, create_using=graph)
229
- assert graphs_equal(Gtrue, G)
230
-
231
- def test_from_adjacency_named(self):
232
- # example from issue #3105
233
- data = {
234
- "A": {"A": 0, "B": 0, "C": 0},
235
- "B": {"A": 1, "B": 0, "C": 0},
236
- "C": {"A": 0, "B": 1, "C": 0},
237
- }
238
- dftrue = pd.DataFrame(data, dtype=np.intp)
239
- df = dftrue[["A", "C", "B"]]
240
- G = nx.from_pandas_adjacency(df, create_using=nx.DiGraph())
241
- df = nx.to_pandas_adjacency(G, dtype=np.intp)
242
- pd.testing.assert_frame_equal(df, dftrue)
243
-
244
- @pytest.mark.parametrize("edge_attr", [["attr2", "attr3"], True])
245
- def test_edgekey_with_multigraph(self, edge_attr):
246
- df = pd.DataFrame(
247
- {
248
- "source": {"A": "N1", "B": "N2", "C": "N1", "D": "N1"},
249
- "target": {"A": "N2", "B": "N3", "C": "N1", "D": "N2"},
250
- "attr1": {"A": "F1", "B": "F2", "C": "F3", "D": "F4"},
251
- "attr2": {"A": 1, "B": 0, "C": 0, "D": 0},
252
- "attr3": {"A": 0, "B": 1, "C": 0, "D": 1},
253
- }
254
- )
255
- Gtrue = nx.MultiGraph(
256
- [
257
- ("N1", "N2", "F1", {"attr2": 1, "attr3": 0}),
258
- ("N2", "N3", "F2", {"attr2": 0, "attr3": 1}),
259
- ("N1", "N1", "F3", {"attr2": 0, "attr3": 0}),
260
- ("N1", "N2", "F4", {"attr2": 0, "attr3": 1}),
261
- ]
262
- )
263
- # example from issue #4065
264
- G = nx.from_pandas_edgelist(
265
- df,
266
- source="source",
267
- target="target",
268
- edge_attr=edge_attr,
269
- edge_key="attr1",
270
- create_using=nx.MultiGraph(),
271
- )
272
- assert graphs_equal(G, Gtrue)
273
-
274
- df_roundtrip = nx.to_pandas_edgelist(G, edge_key="attr1")
275
- df_roundtrip = df_roundtrip.sort_values("attr1")
276
- df_roundtrip.index = ["A", "B", "C", "D"]
277
- pd.testing.assert_frame_equal(
278
- df, df_roundtrip[["source", "target", "attr1", "attr2", "attr3"]]
279
- )
280
-
281
- def test_edgekey_with_normal_graph_no_action(self):
282
- Gtrue = nx.Graph(
283
- [
284
- ("E", "C", {"cost": 9, "weight": 10}),
285
- ("B", "A", {"cost": 1, "weight": 7}),
286
- ("A", "D", {"cost": 7, "weight": 4}),
287
- ]
288
- )
289
- G = nx.from_pandas_edgelist(self.df, 0, "b", True, edge_key="weight")
290
- assert graphs_equal(G, Gtrue)
291
-
292
- def test_nonexisting_edgekey_raises(self):
293
- with pytest.raises(nx.exception.NetworkXError):
294
- nx.from_pandas_edgelist(
295
- self.df,
296
- source="source",
297
- target="target",
298
- edge_key="Not_real",
299
- edge_attr=True,
300
- create_using=nx.MultiGraph(),
301
- )
302
-
303
- def test_multigraph_with_edgekey_no_edgeattrs(self):
304
- Gtrue = nx.MultiGraph()
305
- Gtrue.add_edge(0, 1, key=0)
306
- Gtrue.add_edge(0, 1, key=3)
307
- df = nx.to_pandas_edgelist(Gtrue, edge_key="key")
308
- expected = pd.DataFrame({"source": [0, 0], "target": [1, 1], "key": [0, 3]})
309
- pd.testing.assert_frame_equal(expected, df)
310
- G = nx.from_pandas_edgelist(df, edge_key="key", create_using=nx.MultiGraph)
311
- assert graphs_equal(Gtrue, G)
312
-
313
-
314
- def test_to_pandas_adjacency_with_nodelist():
315
- G = nx.complete_graph(5)
316
- nodelist = [1, 4]
317
- expected = pd.DataFrame(
318
- [[0, 1], [1, 0]], dtype=int, index=nodelist, columns=nodelist
319
- )
320
- pd.testing.assert_frame_equal(
321
- expected, nx.to_pandas_adjacency(G, nodelist, dtype=int)
322
- )
323
-
324
-
325
- def test_to_pandas_edgelist_with_nodelist():
326
- G = nx.Graph()
327
- G.add_edges_from([(0, 1), (1, 2), (1, 3)], weight=2.0)
328
- G.add_edge(0, 5, weight=100)
329
- df = nx.to_pandas_edgelist(G, nodelist=[1, 2])
330
- assert 0 not in df["source"].to_numpy()
331
- assert 100 not in df["weight"].to_numpy()
332
-
333
-
334
- def test_from_pandas_adjacency_with_index_collisions():
335
- """See gh-7407"""
336
- df = pd.DataFrame(
337
- [
338
- [0, 1, 0, 0],
339
- [0, 0, 1, 0],
340
- [0, 0, 0, 1],
341
- [0, 0, 0, 0],
342
- ],
343
- index=[1010001, 2, 1, 1010002],
344
- columns=[1010001, 2, 1, 1010002],
345
- )
346
- G = nx.from_pandas_adjacency(df, create_using=nx.DiGraph)
347
- expected = nx.DiGraph([(1010001, 2), (2, 1), (1, 1010002)])
348
- assert nodes_equal(G.nodes, expected.nodes)
349
- assert edges_equal(G.edges, expected.edges, directed=True)
@@ -1,281 +0,0 @@
1
- import pytest
2
-
3
- import networkx as nx
4
- from networkx.utils import graphs_equal
5
-
6
- np = pytest.importorskip("numpy")
7
- sp = pytest.importorskip("scipy")
8
-
9
-
10
- class TestConvertScipy:
11
- def setup_method(self):
12
- self.G1 = nx.barbell_graph(10, 3)
13
- self.G2 = nx.cycle_graph(10, create_using=nx.DiGraph)
14
-
15
- self.G3 = self.create_weighted(nx.Graph())
16
- self.G4 = self.create_weighted(nx.DiGraph())
17
-
18
- def test_exceptions(self):
19
- class G:
20
- format = None
21
-
22
- pytest.raises(nx.NetworkXError, nx.to_networkx_graph, G)
23
-
24
- def create_weighted(self, G):
25
- g = nx.cycle_graph(4)
26
- e = list(g.edges())
27
- source = [u for u, v in e]
28
- dest = [v for u, v in e]
29
- weight = [s + 10 for s in source]
30
- ex = zip(source, dest, weight)
31
- G.add_weighted_edges_from(ex)
32
- return G
33
-
34
- def identity_conversion(self, G, A, create_using):
35
- GG = nx.from_scipy_sparse_array(A, create_using=create_using)
36
- assert nx.is_isomorphic(G, GG)
37
-
38
- GW = nx.to_networkx_graph(A, create_using=create_using)
39
- assert nx.is_isomorphic(G, GW)
40
-
41
- GI = nx.empty_graph(0, create_using).__class__(A)
42
- assert nx.is_isomorphic(G, GI)
43
-
44
- ACSR = A.tocsr()
45
- GI = nx.empty_graph(0, create_using).__class__(ACSR)
46
- assert nx.is_isomorphic(G, GI)
47
-
48
- ACOO = A.tocoo()
49
- GI = nx.empty_graph(0, create_using).__class__(ACOO)
50
- assert nx.is_isomorphic(G, GI)
51
-
52
- ACSC = A.tocsc()
53
- GI = nx.empty_graph(0, create_using).__class__(ACSC)
54
- assert nx.is_isomorphic(G, GI)
55
-
56
- AD = A.todense()
57
- GI = nx.empty_graph(0, create_using).__class__(AD)
58
- assert nx.is_isomorphic(G, GI)
59
-
60
- AA = A.toarray()
61
- GI = nx.empty_graph(0, create_using).__class__(AA)
62
- assert nx.is_isomorphic(G, GI)
63
-
64
- def test_shape(self):
65
- "Conversion from non-square sparse array."
66
- A = sp.sparse.lil_array([[1, 2, 3], [4, 5, 6]])
67
- pytest.raises(nx.NetworkXError, nx.from_scipy_sparse_array, A)
68
-
69
- def test_identity_graph_matrix(self):
70
- "Conversion from graph to sparse matrix to graph."
71
- A = nx.to_scipy_sparse_array(self.G1)
72
- self.identity_conversion(self.G1, A, nx.Graph())
73
-
74
- def test_identity_digraph_matrix(self):
75
- "Conversion from digraph to sparse matrix to digraph."
76
- A = nx.to_scipy_sparse_array(self.G2)
77
- self.identity_conversion(self.G2, A, nx.DiGraph())
78
-
79
- def test_identity_weighted_graph_matrix(self):
80
- """Conversion from weighted graph to sparse matrix to weighted graph."""
81
- A = nx.to_scipy_sparse_array(self.G3)
82
- self.identity_conversion(self.G3, A, nx.Graph())
83
-
84
- def test_identity_weighted_digraph_matrix(self):
85
- """Conversion from weighted digraph to sparse matrix to weighted digraph."""
86
- A = nx.to_scipy_sparse_array(self.G4)
87
- self.identity_conversion(self.G4, A, nx.DiGraph())
88
-
89
- def test_nodelist(self):
90
- """Conversion from graph to sparse matrix to graph with nodelist."""
91
- P4 = nx.path_graph(4)
92
- P3 = nx.path_graph(3)
93
- nodelist = list(P3.nodes())
94
- A = nx.to_scipy_sparse_array(P4, nodelist=nodelist)
95
- GA = nx.Graph(A)
96
- assert nx.is_isomorphic(GA, P3)
97
-
98
- pytest.raises(nx.NetworkXError, nx.to_scipy_sparse_array, P3, nodelist=[])
99
- # Test nodelist duplicates.
100
- long_nl = nodelist + [0]
101
- pytest.raises(nx.NetworkXError, nx.to_scipy_sparse_array, P3, nodelist=long_nl)
102
-
103
- # Test nodelist contains non-nodes
104
- non_nl = [-1, 0, 1, 2]
105
- pytest.raises(nx.NetworkXError, nx.to_scipy_sparse_array, P3, nodelist=non_nl)
106
-
107
- def test_weight_keyword(self):
108
- WP4 = nx.Graph()
109
- WP4.add_edges_from((n, n + 1, {"weight": 0.5, "other": 0.3}) for n in range(3))
110
- P4 = nx.path_graph(4)
111
- A = nx.to_scipy_sparse_array(P4)
112
- np.testing.assert_equal(
113
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
114
- )
115
- np.testing.assert_equal(
116
- 0.5 * A.todense(), nx.to_scipy_sparse_array(WP4).todense()
117
- )
118
- np.testing.assert_equal(
119
- 0.3 * A.todense(), nx.to_scipy_sparse_array(WP4, weight="other").todense()
120
- )
121
-
122
- def test_format_keyword(self):
123
- WP4 = nx.Graph()
124
- WP4.add_edges_from((n, n + 1, {"weight": 0.5, "other": 0.3}) for n in range(3))
125
- P4 = nx.path_graph(4)
126
- A = nx.to_scipy_sparse_array(P4, format="csr")
127
- np.testing.assert_equal(
128
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
129
- )
130
-
131
- A = nx.to_scipy_sparse_array(P4, format="csc")
132
- np.testing.assert_equal(
133
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
134
- )
135
-
136
- A = nx.to_scipy_sparse_array(P4, format="coo")
137
- np.testing.assert_equal(
138
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
139
- )
140
-
141
- A = nx.to_scipy_sparse_array(P4, format="bsr")
142
- np.testing.assert_equal(
143
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
144
- )
145
-
146
- A = nx.to_scipy_sparse_array(P4, format="lil")
147
- np.testing.assert_equal(
148
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
149
- )
150
-
151
- A = nx.to_scipy_sparse_array(P4, format="dia")
152
- np.testing.assert_equal(
153
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
154
- )
155
-
156
- A = nx.to_scipy_sparse_array(P4, format="dok")
157
- np.testing.assert_equal(
158
- A.todense(), nx.to_scipy_sparse_array(WP4, weight=None).todense()
159
- )
160
-
161
- def test_format_keyword_raise(self):
162
- with pytest.raises(nx.NetworkXError):
163
- WP4 = nx.Graph()
164
- WP4.add_edges_from(
165
- (n, n + 1, {"weight": 0.5, "other": 0.3}) for n in range(3)
166
- )
167
- P4 = nx.path_graph(4)
168
- nx.to_scipy_sparse_array(P4, format="any_other")
169
-
170
- def test_null_raise(self):
171
- with pytest.raises(nx.NetworkXError):
172
- nx.to_scipy_sparse_array(nx.Graph())
173
-
174
- def test_empty(self):
175
- G = nx.Graph()
176
- G.add_node(1)
177
- M = nx.to_scipy_sparse_array(G)
178
- np.testing.assert_equal(M.toarray(), np.array([[0]]))
179
-
180
- def test_ordering(self):
181
- G = nx.DiGraph()
182
- G.add_edge(1, 2)
183
- G.add_edge(2, 3)
184
- G.add_edge(3, 1)
185
- M = nx.to_scipy_sparse_array(G, nodelist=[3, 2, 1])
186
- np.testing.assert_equal(
187
- M.toarray(), np.array([[0, 0, 1], [1, 0, 0], [0, 1, 0]])
188
- )
189
-
190
- def test_selfloop_graph(self):
191
- G = nx.Graph([(1, 1)])
192
- M = nx.to_scipy_sparse_array(G)
193
- np.testing.assert_equal(M.toarray(), np.array([[1]]))
194
-
195
- G.add_edges_from([(2, 3), (3, 4)])
196
- M = nx.to_scipy_sparse_array(G, nodelist=[2, 3, 4])
197
- np.testing.assert_equal(
198
- M.toarray(), np.array([[0, 1, 0], [1, 0, 1], [0, 1, 0]])
199
- )
200
-
201
- def test_selfloop_digraph(self):
202
- G = nx.DiGraph([(1, 1)])
203
- M = nx.to_scipy_sparse_array(G)
204
- np.testing.assert_equal(M.toarray(), np.array([[1]]))
205
-
206
- G.add_edges_from([(2, 3), (3, 4)])
207
- M = nx.to_scipy_sparse_array(G, nodelist=[2, 3, 4])
208
- np.testing.assert_equal(
209
- M.toarray(), np.array([[0, 1, 0], [0, 0, 1], [0, 0, 0]])
210
- )
211
-
212
- def test_from_scipy_sparse_array_parallel_edges(self):
213
- """Tests that the :func:`networkx.from_scipy_sparse_array` function
214
- interprets integer weights as the number of parallel edges when
215
- creating a multigraph.
216
-
217
- """
218
- A = sp.sparse.csr_array([[1, 1], [1, 2]])
219
- # First, with a simple graph, each integer entry in the adjacency
220
- # matrix is interpreted as the weight of a single edge in the graph.
221
- expected = nx.DiGraph()
222
- edges = [(0, 0), (0, 1), (1, 0)]
223
- expected.add_weighted_edges_from([(u, v, 1) for (u, v) in edges])
224
- expected.add_edge(1, 1, weight=2)
225
- actual = nx.from_scipy_sparse_array(
226
- A, parallel_edges=True, create_using=nx.DiGraph
227
- )
228
- assert graphs_equal(actual, expected)
229
- actual = nx.from_scipy_sparse_array(
230
- A, parallel_edges=False, create_using=nx.DiGraph
231
- )
232
- assert graphs_equal(actual, expected)
233
- # Now each integer entry in the adjacency matrix is interpreted as the
234
- # number of parallel edges in the graph if the appropriate keyword
235
- # argument is specified.
236
- edges = [(0, 0), (0, 1), (1, 0), (1, 1), (1, 1)]
237
- expected = nx.MultiDiGraph()
238
- expected.add_weighted_edges_from([(u, v, 1) for (u, v) in edges])
239
- actual = nx.from_scipy_sparse_array(
240
- A, parallel_edges=True, create_using=nx.MultiDiGraph
241
- )
242
- assert graphs_equal(actual, expected)
243
- expected = nx.MultiDiGraph()
244
- expected.add_edges_from(set(edges), weight=1)
245
- # The sole self-loop (edge 0) on vertex 1 should have weight 2.
246
- expected[1][1][0]["weight"] = 2
247
- actual = nx.from_scipy_sparse_array(
248
- A, parallel_edges=False, create_using=nx.MultiDiGraph
249
- )
250
- assert graphs_equal(actual, expected)
251
-
252
- def test_symmetric(self):
253
- """Tests that a symmetric matrix has edges added only once to an
254
- undirected multigraph when using
255
- :func:`networkx.from_scipy_sparse_array`.
256
-
257
- """
258
- A = sp.sparse.csr_array([[0, 1], [1, 0]])
259
- G = nx.from_scipy_sparse_array(A, create_using=nx.MultiGraph)
260
- expected = nx.MultiGraph()
261
- expected.add_edge(0, 1, weight=1)
262
- assert graphs_equal(G, expected)
263
-
264
-
265
- @pytest.mark.parametrize("sparse_format", ("csr", "csc", "dok"))
266
- def test_from_scipy_sparse_array_formats(sparse_format):
267
- """Test all formats supported by _generate_weighted_edges."""
268
- # trinode complete graph with non-uniform edge weights
269
- expected = nx.Graph()
270
- expected.add_edges_from(
271
- [
272
- (0, 1, {"weight": 3}),
273
- (0, 2, {"weight": 2}),
274
- (1, 0, {"weight": 3}),
275
- (1, 2, {"weight": 1}),
276
- (2, 0, {"weight": 2}),
277
- (2, 1, {"weight": 1}),
278
- ]
279
- )
280
- A = sp.sparse.coo_array([[0, 3, 2], [3, 0, 1], [2, 1, 0]]).asformat(sparse_format)
281
- assert graphs_equal(expected, nx.from_scipy_sparse_array(A))
@@ -1,40 +0,0 @@
1
- import pytest
2
-
3
- import networkx as nx
4
-
5
- # smoke tests for exceptions
6
-
7
-
8
- def test_raises_networkxexception():
9
- with pytest.raises(nx.NetworkXException):
10
- raise nx.NetworkXException
11
-
12
-
13
- def test_raises_networkxerr():
14
- with pytest.raises(nx.NetworkXError):
15
- raise nx.NetworkXError
16
-
17
-
18
- def test_raises_networkx_pointless_concept():
19
- with pytest.raises(nx.NetworkXPointlessConcept):
20
- raise nx.NetworkXPointlessConcept
21
-
22
-
23
- def test_raises_networkxalgorithmerr():
24
- with pytest.raises(nx.NetworkXAlgorithmError):
25
- raise nx.NetworkXAlgorithmError
26
-
27
-
28
- def test_raises_networkx_unfeasible():
29
- with pytest.raises(nx.NetworkXUnfeasible):
30
- raise nx.NetworkXUnfeasible
31
-
32
-
33
- def test_raises_networkx_no_path():
34
- with pytest.raises(nx.NetworkXNoPath):
35
- raise nx.NetworkXNoPath
36
-
37
-
38
- def test_raises_networkx_unbounded():
39
- with pytest.raises(nx.NetworkXUnbounded):
40
- raise nx.NetworkXUnbounded
@@ -1,11 +0,0 @@
1
- import pytest
2
-
3
-
4
- def test_namespace_alias():
5
- with pytest.raises(ImportError):
6
- from networkx import nx
7
-
8
-
9
- def test_namespace_nesting():
10
- with pytest.raises(ImportError):
11
- from networkx import networkx