nmr-processing 9.5.0 → 9.5.1-pre.1685396168

package/lib/xyz/xyzBidimensionalFFT.d.ts

@@ -0,0 +1,40 @@
+import { Data2D, DoubleArray } from 'cheminfo-types';
+import { ApodizationFilterOptions } from '../apodization/apodization';
+import { DirectDimensionOptions } from './util/fft2d/fftDirectDimension';
+import { IndirectDimensionOptions } from './util/fft2d/fftIndirectDimension';
+import { ZeroFillingOptions } from './util/fft2d/zeroFilling';
+type Info2D = any;
+interface BidimensionalFFTOptions {
+    fnMode: string;
+    info: Info2D;
+    zeroFilling?: ZeroFillingOptions;
+    phaseCorrection?: {
+        ph0: number;
+        ph1: number;
+    };
+    digitalFilterValue?: number;
+    apodization?: ApodizationFilterOptions;
+    indirect?: IndirectDimensionOptions;
+    direct?: DirectDimensionOptions;
+}
+export declare function xyzBidimensionalFFT(data: Data2D, options: BidimensionalFFTOptions): {
+    re: {
+        minX: number;
+        maxX: number;
+        minY: number;
+        maxY: number;
+        z: DoubleArray[];
+        maxZ: number;
+        minZ: number;
+    };
+    im: {
+        minX: number;
+        maxX: number;
+        minY: number;
+        maxY: number;
+        z: DoubleArray[];
+        maxZ: number;
+        minZ: number;
+    };
+};
+export {};

package/lib/xyz/xyzBidimensionalFFT.js

@@ -0,0 +1,79 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.xyzBidimensionalFFT = void 0;
+const quadrature_1 = require("./quadrature");
+const fftDirectDimension_1 = require("./util/fft2d/fftDirectDimension");
+const fftIndirectDimension_1 = require("./util/fft2d/fftIndirectDimension");
+function xyzBidimensionalFFT(data, options) {
+    ensureData2DFid(data);
+    const { info, fnMode, digitalFilterValue = 0, zeroFilling: zeroFillingGeneral, } = options;
+    const orderedData = (0, quadrature_1.quadrature)(data, { fnMode });
+    const { re: reData } = orderedData;
+    const nbRows = reData.length;
+    const nbColumns = reData[0].length;
+    const { direct = {}, indirect = {} } = options;
+    const { zeroFilling: zeroFillingF2 = zeroFillingGeneral } = direct;
+    const { factor: f2Factor = 2 } = zeroFillingF2 || {};
+    const nbPointsF2 = (zeroFillingF2 === null || zeroFillingF2 === void 0 ? void 0 : zeroFillingF2.nbPoints) || 2 ** Math.round(Math.log2(nbColumns * f2Factor));
+    const transformed = (0, fftDirectDimension_1.fftDirectDimension)(orderedData, {
+        ...direct,
+        fnMode,
+        digitalFilterValue,
+        zeroFilling: { nbPoints: nbPointsF2 },
+    });
+    const { zeroFilling: zeroFillingF1 } = options;
+    const { factor: f1Factor = 2 } = zeroFillingF1 || {};
+    const nbPointsF1 = (zeroFillingF1 === null || zeroFillingF1 === void 0 ? void 0 : zeroFillingF1.nbPoints) || 2 ** Math.round(Math.log2(nbRows * f1Factor));
+    const { re: reResult, im: imResult } = (0, fftIndirectDimension_1.fftIndirectDimension)(transformed, {
+        ...indirect,
+        fnMode,
+        zeroFilling: { nbPoints: nbPointsF1 },
+    });
+    const minMaxXY = getMinMaxXY(info);
+    return {
+        re: {
+            z: convertToDoubleArray(reResult),
+            maxZ: reResult.max(),
+            minZ: reResult.min(),
+            ...minMaxXY,
+        },
+        im: {
+            z: convertToDoubleArray(imResult),
+            maxZ: imResult.max(),
+            minZ: imResult.min(),
+            ...minMaxXY,
+        },
+    };
+}
+exports.xyzBidimensionalFFT = xyzBidimensionalFFT;
+function ensureData2DFid(data) {
+    if (!('re' in data)) {
+        throw new Error('bidimensional FFT only can be applied to raw data');
+    }
+}
+function convertToDoubleArray(data) {
+    const result = new Array(data.rows);
+    for (let i = 0; i < data.rows; i++) {
+        result[i] = new Float64Array(data.getRow(i));
+    }
+    return result;
+}
+function getMinMaxXY(info) {
+    const min = [];
+    const max = [];
+    for (let i = 0; i < info.baseFrequency.length; i++) {
+        const baseFrequency = Number.parseFloat(info.baseFrequency[i]);
+        const frequencyOffset = Number.parseFloat(info.frequencyOffset[i]);
+        const spectralWidth = Number.parseFloat(info.spectralWidth[i]);
+        const offset = frequencyOffset / baseFrequency;
+        min.push(offset - spectralWidth * 0.5);
+        max.push(offset + spectralWidth * 0.5);
+    }
+    return {
+        minX: min[0],
+        maxX: max[0],
+        minY: min[1],
+        maxY: max[1],
+    };
+}
+//# sourceMappingURL=xyzBidimensionalFFT.js.map

package/lib/xyz/xyzBidimensionalFFT.js.map

@@ -0,0 +1 @@
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package/lib/xyz/xyzJResAnalyzer.d.ts

@@ -1,4 +1,3 @@
-import type { Peak2D } from 'ml-matrix-peaks-finder';
 import type { JAxisKeys } from '../signals/utils/jAnalyzer';
 import type { NMRSignal2D } from './NMRSignal2D';
 interface CompilePatternOptions {
@@ -26,7 +25,5 @@ interface XYZJResAnalyzerOptions extends CompilePatternOptions {
      */
     getZones?: boolean;
 }
-export declare function xyzJResAnalyzer(signals: NMRSignal2D[], options?: XYZJResAnalyzerOptions): import("./xyzAutoZonesPicking").NMRZoneWithID[] | (NMRSignal2D<Peak2D> & {
-    id: string;
-})[];
+export declare function xyzJResAnalyzer(signals: NMRSignal2D[], options?: XYZJResAnalyzerOptions): any[];
 export {};

package/lib/xyz/xyzJResAnalyzer.js

@@ -33,6 +33,7 @@ function xyzJResAnalyzer(signals, options = {}) {
 }
 exports.xyzJResAnalyzer = xyzJResAnalyzer;
 function compilePattern(signals, options) {
+    var _a;
     let { observedFrequencies, tolerances, nuclei, jAnalyzer: jAnalyzerOptions, } = options;
     let signalOptions = {
         observedFrequencies,
@@ -42,40 +43,48 @@ function compilePattern(signals, options) {
         dy: signals[0].y.resolution,
     };
     const defaultWidth = 0.02 * observedFrequencies[0];
-    const newSignals = parse(stringify(signals));
+    const newSignals = [];
     //adapt to 1D jAnalyzer
-    for (const signal of newSignals) {
-        let peaks = signal.peaks;
-        signal.nbPeaks = signal.peaks.length;
-        signal.multiplicity = '';
-        signal.pattern = '';
-        signal.delta1 = signal.shiftY;
-        signal.observe = observedFrequencies[1];
-        signal.integralData = {
-            from: Number.MAX_SAFE_INTEGER,
-            to: Number.MIN_SAFE_INTEGER,
-        };
-        for (const peak of peaks) {
-            if (!peak.width)
-                peak.width = defaultWidth;
+    for (const signal of signals) {
+        let peaks = [];
+        for (const peak of signal.peaks || []) {
+            peaks.push({
+                ...peak,
+                width: defaultWidth,
+            });
         }
         peaks.sort((a, b) => a.y - b.y);
+        newSignals.push({
+            nbPeaks: peaks.length,
+            multiplicity: '',
+            pattern: '',
+            startX: peaks[0].y - defaultWidth,
+            stopX: peaks[peaks.length - 1].y + defaultWidth,
+            delta: signal.y.delta,
+            observe: observedFrequencies[1],
+            integralData: {
+                value: -1,
+                from: Number.MAX_SAFE_INTEGER,
+                to: Number.MIN_SAFE_INTEGER,
+            },
+            peaks,
+        });
     }
     for (let i = 0; i < signals.length; i++) {
-        jAnalyzer_1.default.compilePattern(newSignals[i], jAnalyzerOptions);
-        if (newSignals[i].maskPattern &&
-            newSignals[i].multiplicity !== 'm' &&
-            newSignals[i].multiplicity !== '') {
+        const signal = jAnalyzer_1.default.compilePattern(newSignals[i], jAnalyzerOptions);
+        if (signal.maskPattern &&
+            signal.multiplicity !== 'm' &&
+            signal.multiplicity !== '') {
             // Create a new signal with the removed peaks
             let peaksO = [];
-            for (let j = newSignals[i].maskPattern.length - 1; j >= 0; j--) {
-                if (newSignals[i].maskPattern[j] === false) {
-                    let peakR = newSignals[i].peaks.splice(j, 1)[0];
+            for (let j = signal.maskPattern.length - 1; j >= 0; j--) {
+                if (!signal.maskPattern[j]) {
+                    let peakR = signal.peaks.splice(j, 1)[0];
                     peaksO.push(peakR);
-                    newSignals[i].mask.splice(j, 1);
-                    newSignals[i].mask2.splice(j, 1);
-                    newSignals[i].maskPattern.splice(j, 1);
-                    newSignals[i].nbPeaks--;
+                    signal.mask.splice(j, 1);
+                    (_a = signal.mask2) === null || _a === void 0 ? void 0 : _a.splice(j, 1);
+                    signal.maskPattern.splice(j, 1);
+                    signal.nbPeaks--;
                 }
             }
             if (peaksO.length > 0) {

package/lib/xyz/xyzJResAnalyzer.js.map

@@ -1 +1 @@
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package/lib-esm/apodization/apodization.js

@@ -1,7 +1,10 @@
 import { applyWindow } from './applyWindow';
 import { compose } from './compose';
-export function apodization(data, options) {
+export function apodization(data, options = {}) {
     const { compose: composeOptions, pointsToShift } = options;
+    if (!composeOptions) {
+        return { ...data, windowData: new Float64Array(data.re.length).fill(1) };
+    }
     const windowData = compose(composeOptions);
     const applyWindowOptions = {
         windowData,

package/lib-esm/apodization/apodization.js.map

@@ -1 +1 @@
-{"version":3,"file":"apodization.js","sourceRoot":"","sources":["../../src/apodization/apodization.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAgB,MAAM,WAAW,CAAC;AAiBlD,MAAM,UAAU,WAAW,CAAC,IAAc,EAAE,OAA2B;IACrE,MAAM,EAAE,OAAO,EAAE,cAAc,EAAE,aAAa,EAAE,GAAG,OAAO,CAAC;IAC3D,MAAM,UAAU,GAAG,OAAO,CAAC,cAAc,CAAC,CAAC;IAE3C,MAAM,kBAAkB,GAAG;QACzB,UAAU;QACV,aAAa;KACd,CAAC;IAEF,MAAM,EAAE,GAAG,WAAW,CAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC;IACpD,MAAM,EAAE,GAAG,WAAW,CAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC;IAEpD,OAAO,EAAE,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,CAAC;AAChC,CAAC"}
+{"version":3,"file":"apodization.js","sourceRoot":"","sources":["../../src/apodization/apodization.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAgB,MAAM,WAAW,CAAC;AAiBlD,MAAM,UAAU,WAAW,CAAC,IAAc,EAAE,UAAoC,EAAE;IAChF,MAAM,EAAE,OAAO,EAAE,cAAc,EAAE,aAAa,EAAE,GAAG,OAAO,CAAC;IAE3D,IAAI,CAAC,cAAc,EAAE;QACnB,OAAO,EAAE,GAAG,IAAI,EAAE,UAAU,EAAE,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;KAC1E;IAED,MAAM,UAAU,GAAG,OAAO,CAAC,cAAc,CAAC,CAAC;IAE3C,MAAM,kBAAkB,GAAG;QACzB,UAAU;QACV,aAAa;KACd,CAAC;IACF,MAAM,EAAE,GAAG,WAAW,CAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC;IACpD,MAAM,EAAE,GAAG,WAAW,CAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC;IAEpD,OAAO,EAAE,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,CAAC;AAChC,CAAC"}

package/lib-esm/apodization/applyWindow.js.map

@@ -1 +1 @@
-{"version":3,"file":"applyWindow.js","sourceRoot":"","sources":["../../src/apodization/applyWindow.ts"],"names":[],"mappings":"AA0BA;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,IAAiB,EAAE,OAA2B;IACxE,MAAM,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC;IAE/B,MAAM,EACJ,UAAU,EACV,KAAK,GAAG,CAAC,EACT,MAAM,GAAG,UAAU,EACnB,aAAa,GAAG,CAAC,EACjB,MAAM,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,GAChC,GAAG,OAAO,CAAC;IAEZ,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,MAAM,EAAE,UAAU,GAAG,aAAa,CAAC,CAAC;IAC3E,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE;QACjD,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IAED,KAAK,IAAI,CAAC,GAAG,UAAU,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,GAAG,aAAa,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QAC3E,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}
+{"version":3,"file":"applyWindow.js","sourceRoot":"","sources":["../../src/apodization/applyWindow.ts"],"names":[],"mappings":"AA0BA;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,IAAiB,EAAE,OAA2B;IACxE,MAAM,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC;IAE/B,MAAM,EACJ,UAAU,EACV,KAAK,GAAG,CAAC,EACT,MAAM,GAAG,UAAU,EACnB,aAAa,GAAG,CAAC,EACjB,MAAM,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,GAChC,GAAG,OAAO,CAAC;IAEZ,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,MAAM,EAAE,UAAU,GAAG,aAAa,CAAC,CAAC;IAC3E,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE;QACjD,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IACD,KAAK,IAAI,CAAC,GAAG,UAAU,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,GAAG,aAAa,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QAC3E,MAAM,CAAC,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,EAAE,CAAC,CAAC;KAC9B;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/lib-esm/apodization/compose.js.map

@@ -1 +1 @@
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+{"version":3,"file":"compose.js","sourceRoot":"","sources":["../../src/apodization/compose.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAC5C,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAE5C,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAyB1C,MAAM,UAAU,OAAO,CAAC,YAA0B;IAChD,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,EAAE,EAAE,GAAG,YAAY,CAAC;IACzD,IAAI,IAAI,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAChD,MAAM,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;QACzB,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,OAAO,CAAC;QACrC,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAC;QACxC,MAAM,MAAM,GACV,QAAQ,IAAI,YAAY,CAAC,CAAC,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,UAAU,GAAG,KAAK,CAAC;QAEtE,MAAM,UAAU,GAAG,OAAO,CAAC,WAAW,CAAC,KAAK,CAAC,EAAE,MAAM,CAAC,CAAC;QAEvD,WAAW,CAAC,IAAI,EAAE;YAChB,UAAU;YACV,MAAM;YACN,KAAK;YACL,MAAM,EAAE,IAAI;SACb,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IACH,OAAO,IAAI,CAAC;AACd,CAAC"}

package/lib-esm/apodization/getFunction.js

@@ -1,5 +1,6 @@
 import { exponential } from './shapes/exponential';
 import { lorentzToGauss } from './shapes/lorentzToGauss';
+import { sineBell } from './shapes/sineBell';
 export function getFunction(shape) {
     const { kind, options } = shape;
     switch (kind) {
@@ -7,6 +8,8 @@ export function getFunction(shape) {
             return exponential(options);
         case 'lorentzToGauss':
             return lorentzToGauss(options);
+        case 'sineBell':
+            return sineBell(options);
         default:
             throw Error(`Unknown distribution ${kind}`);
     }

package/lib-esm/apodization/getFunction.js.map

@@ -1 +1 @@
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+{"version":3,"file":"getFunction.js","sourceRoot":"","sources":["../../src/apodization/getFunction.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AACnD,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAE7C,MAAM,UAAU,WAAW,CAAC,KAAsB;IAChD,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC;IAChC,QAAQ,IAAI,EAAE;QACZ,KAAK,aAAa;YAChB,OAAO,WAAW,CAAC,OAAO,CAAC,CAAC;QAC9B,KAAK,gBAAgB;YACnB,OAAO,cAAc,CAAC,OAAO,CAAC,CAAC;QACjC,KAAK,UAAU;YACb,OAAO,QAAQ,CAAC,OAAO,CAAC,CAAC;QAC3B;YACE,MAAM,KAAK,CAAC,wBAAwB,IAAc,EAAE,CAAC,CAAC;KACzD;AACH,CAAC"}

package/lib-esm/apodization/shapes/sineBell.js

@@ -0,0 +1,13 @@
+export function sineBell(options) {
+    const { exponent = 1, offset = 0, end = 1, length } = options;
+    if (length === undefined) {
+        throw new Error('length options should exists for sineBell shape');
+    }
+    if (end < 0 || end > 1) {
+        throw new Error(`the end parameter should be [0-1]`);
+    }
+    const c1 = Math.PI * offset;
+    const c2 = (Math.PI * (end - offset)) / (length - 1);
+    return (i) => Math.pow(Math.sin(c1 + c2 * i), exponent);
+}
+//# sourceMappingURL=sineBell.js.map

package/lib-esm/apodization/shapes/sineBell.js.map

@@ -0,0 +1 @@
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package/lib-esm/apodization/utils/getData.js.map

@@ -1 +1 @@
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+{"version":3,"file":"getData.js","sourceRoot":"","sources":["../../../src/apodization/utils/getData.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,MAAM,UAAU,OAAO,CAAC,IAA2B,EAAE,MAAc;IACjE,MAAM,IAAI,GAAG,IAAI,YAAY,CAAC,MAAM,CAAC,CAAC;IACtC,IAAI,GAAG,GAAG,MAAM,CAAC,gBAAgB,CAAC;IAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE,EAAE;QAC/B,MAAM,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;QACtB,IAAI,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;QAChB,IAAI,KAAK,GAAG,GAAG;YAAE,GAAG,GAAG,KAAK,CAAC;KAC9B;IACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE;QAAE,IAAI,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC;IAChD,OAAO,IAAI,CAAC;AACd,CAAC"}

package/lib-esm/constants/SignalsKinds.js

@@ -0,0 +1,37 @@
+export const SignalKinds = [
+    {
+        label: 'Signal',
+        value: 'signal',
+    },
+    {
+        label: 'Reference',
+        value: 'reference',
+    },
+    {
+        label: 'Solvent',
+        value: 'solvent',
+    },
+    {
+        label: 'Impurity',
+        value: 'impurity',
+    },
+    {
+        label: 'Standard',
+        value: 'standard',
+    },
+    {
+        label: 'P1',
+        value: 'p1',
+    },
+    {
+        label: 'P2',
+        value: 'p2',
+    },
+    {
+        label: 'P3',
+        value: 'p3',
+    },
+];
+export const SignalKindsToInclude = ['signal'];
+export const DatumKind = { signal: 'signal', mixed: 'mixed' };
+//# sourceMappingURL=SignalsKinds.js.map

package/lib-esm/constants/SignalsKinds.js.map

@@ -0,0 +1 @@
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package/lib-esm/datum/Entry1D.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=Entry1D.js.map

package/lib-esm/datum/Entry1D.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Entry1D.js","sourceRoot":"","sources":["../../src/datum/Entry1D.ts"],"names":[],"mappings":""}

package/lib-esm/datum/ExclusionZone.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=ExclusionZone.js.map

package/lib-esm/datum/ExclusionZone.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ExclusionZone.js","sourceRoot":"","sources":["../../src/datum/ExclusionZone.ts"],"names":[],"mappings":""}

package/lib-esm/datum/Filters.js

@@ -0,0 +1,23 @@
+import * as apodization from './data1d/filter1d/apodization';
+import * as baselineCorrection from './data1d/filter1d/baselineCorrection';
+import * as digitalFilter from './data1d/filter1d/digitalFilter';
+import * as fft from './data1d/filter1d/fft';
+import * as phaseCorrection from './data1d/filter1d/phaseCorrection';
+import * as shiftX from './data1d/filter1d/shiftX';
+import * as signalProcessing from './data1d/filter1d/signalProcessing';
+import * as zeroFilling from './data1d/filter1d/zeroFilling';
+import * as shift2DX from './data2d/filter2d/shiftX';
+import * as shift2DY from './data2d/filter2d/shiftY';
+export const Filters = {
+    apodization,
+    signalProcessing,
+    baselineCorrection,
+    digitalFilter,
+    fft,
+    phaseCorrection,
+    shiftX,
+    zeroFilling,
+    shift2DX,
+    shift2DY,
+};
+//# sourceMappingURL=Filters.js.map

package/lib-esm/datum/Filters.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Filters.js","sourceRoot":"","sources":["../../src/datum/Filters.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,WAAW,MAAM,+BAA+B,CAAC;AAC7D,OAAO,KAAK,kBAAkB,MAAM,sCAAsC,CAAC;AAC3E,OAAO,KAAK,aAAa,MAAM,iCAAiC,CAAC;AACjE,OAAO,KAAK,GAAG,MAAM,uBAAuB,CAAC;AAC7C,OAAO,KAAK,eAAe,MAAM,mCAAmC,CAAC;AACrE,OAAO,KAAK,MAAM,MAAM,0BAA0B,CAAC;AACnD,OAAO,KAAK,gBAAgB,MAAM,oCAAoC,CAAC;AACvE,OAAO,KAAK,WAAW,MAAM,+BAA+B,CAAC;AAC7D,OAAO,KAAK,QAAQ,MAAM,0BAA0B,CAAC;AACrD,OAAO,KAAK,QAAQ,MAAM,0BAA0B,CAAC;AAYrD,MAAM,CAAC,MAAM,OAAO,GAUhB;IACF,WAAW;IACX,gBAAgB;IAChB,kBAAkB;IAClB,aAAa;IACb,GAAG;IACH,eAAe;IACf,MAAM;IACN,WAAW;IACX,QAAQ;IACR,QAAQ;CACT,CAAC"}

package/lib-esm/datum/FiltersManager.js

@@ -0,0 +1,175 @@
+import { v4 } from '@lukeed/uuid';
+import { cloneData1D } from '../utilities/cloneData1D';
+import { cloneData2D } from '../utilities/cloneData2D';
+import { Filters } from './Filters';
+import { updateIntegrals } from './data1d/utils/updateIntegrals';
+import { updatePeaks } from './data1d/utils/updatePeaks';
+import { updateRanges } from './data1d/utils/updateRanges';
+import { updateZones } from './data2d/utils/updateZones';
+function resetDataToOrigin(datum) {
+    datum.data =
+        datum.info.dimension === 1
+            ? cloneData1D(datum.originalData)
+            : cloneData2D(datum.originalData);
+    const { originalInfo } = datum;
+    if (originalInfo) {
+        datum.info = { ...originalInfo };
+    }
+}
+// update the the part of the data that affected by applying the filters
+function updateData(datum) {
+    if (datum.info.dimension === 1) {
+        updatePeaks(datum);
+        updateRanges(datum);
+        updateIntegrals(datum);
+    }
+    else if (datum.info.dimension === 2) {
+        updateZones(datum);
+    }
+}
+/***
+ * @param {object} Filters [{name:'',options:{}},{...}]
+ */
+export function applyFilter(datum, filters = [], options = {}) {
+    const { forceReapply = false, filterIndex } = options;
+    let isReduced = false;
+    for (let filter of filters) {
+        const filterOption = {
+            name: filter.name,
+            label: Filters[filter.name].name,
+            value: filter.value,
+        };
+        const previousFilter = lookupForFilter(datum, filter.name);
+        const isDeleteAllow = 'isDeleteAllow' in filter ? filter.isDeleteAllow : true;
+        if (previousFilter) {
+            const reduceResult = Filters[filter.name].reduce(previousFilter.value, filterOption.value);
+            if (reduceResult.once) {
+                if (!isReduced) {
+                    isReduced = true;
+                }
+                if (reduceResult.reduce != null && reduceResult.reduce !== undefined) {
+                    replaceFilter(datum, previousFilter.id, reduceResult.reduce);
+                }
+            }
+            else {
+                addFilter(datum, filterOption, { isDeleteAllow, filterIndex });
+            }
+        }
+        else {
+            addFilter(datum, filterOption, { isDeleteAllow, filterIndex });
+        }
+    }
+    if (forceReapply) {
+        reapplyFilters(datum);
+    }
+    else if (isReduced) {
+        if (filters.length === 1 && isLastFilter(datum, filters[0].name)) {
+            Filters[filters[0].name].apply(datum, filters[0].value);
+        }
+        else {
+            reapplyFilters(datum);
+        }
+    }
+    else {
+        for (let filter of filters) {
+            Filters[filter.name].apply(datum, filter.value);
+        }
+    }
+    updateData(datum);
+}
+function isLastFilter(datum, id) {
+    const index = datum.filters.findIndex((f) => f.name === id);
+    if (datum.filters.length === index + 1) {
+        return true;
+    }
+    return false;
+}
+export function lookupForFilter(datum, filterName) {
+    return datum.filters.find((f) => f.name === filterName);
+}
+export function reapplyFilters(datum, filters) {
+    const _filters = filters || datum.filters;
+    enableFilter(datum, null, null, _filters);
+}
+// id filter id
+export function enableFilter(datum, id, checked, filters) {
+    datum.filters = datum.filters.slice(0);
+    if (id) {
+        datum.filters = datum.filters.map((filter) => {
+            return { ...filter, flag: filter.id === id ? checked : filter.flag };
+        });
+    }
+    resetDataToOrigin(datum);
+    const _filters = filters || datum.filters;
+    for (let filterIndex = 0; filterIndex < _filters.length; filterIndex++) {
+        const filter = datum.filters[filterIndex];
+        datum.filters[filterIndex] = {
+            ...datum.filters[filterIndex],
+        };
+        if (filter.flag) {
+            try {
+                Filters[filter.name].apply(datum, filter.value);
+            }
+            catch (error) {
+                datum.filters[filterIndex] = {
+                    ...datum.filters[filterIndex],
+                    error: error.message,
+                };
+            }
+        }
+    }
+}
+export function deleteFilter(datum, id) {
+    // delete the specified filter otherwise delete all filters where isDeleteAllow is true
+    datum.filters = datum.filters
+        .slice(0)
+        .filter((filter) => (id ? filter.id !== id : !filter.isDeleteAllow));
+    resetDataToOrigin(datum);
+    for (let i = 0; i < datum.filters.length; i++) {
+        datum.filters[i] = {
+            ...datum.filters[i],
+        };
+        if (datum.filters[i].flag) {
+            const { name, value } = datum.filters[i];
+            try {
+                Filters[name].apply(datum, value);
+            }
+            catch (error) {
+                datum.filters[i] = {
+                    ...datum.filters[i],
+                    error: error.message,
+                };
+            }
+        }
+    }
+    updateData(datum);
+}
+export function addFilter(datum, filterOptions, options = {}) {
+    const { filterIndex, isDeleteAllow = true } = options;
+    const id = v4();
+    const filter = {
+        ...filterOptions,
+        id,
+        flag: true,
+        isDeleteAllow,
+    };
+    if (typeof filterIndex === 'number' && filterIndex !== -1) {
+        datum.filters = [
+            ...datum.filters.slice(0, filterIndex + 1),
+            filter,
+            ...datum.filters.slice(filterIndex + 1),
+        ];
+    }
+    else {
+        datum.filters.push(filter);
+    }
+}
+function replaceFilter(datum, filterID, value) {
+    // datum.filters = datum.filters.slice(0);
+    const index = datum.filters.findIndex((f) => f.id === filterID);
+    datum.filters[index] = {
+        ...datum.filters[index],
+        value,
+    };
+}
+//# sourceMappingURL=FiltersManager.js.map

package/lib-esm/datum/FiltersManager.js.map

@@ -0,0 +1 @@
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package/lib-esm/datum/MatrixFilter.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=MatrixFilter.js.map

package/lib-esm/datum/MatrixFilter.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MatrixFilter.js","sourceRoot":"","sources":["../../src/datum/MatrixFilter.ts"],"names":[],"mappings":""}

package/lib-esm/datum/MatrixOptions.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=MatrixOptions.js.map

package/lib-esm/datum/MatrixOptions.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MatrixOptions.js","sourceRoot":"","sources":["../../src/datum/MatrixOptions.ts"],"names":[],"mappings":""}