nmr-processing 9.5.0 → 9.5.1-pre.1685396168

package/lib/datum/data1d/filter1d/apodization.d.ts

@@ -0,0 +1,26 @@
+import { Data1D } from '../../../types/Data1D';
+import { Entry1D } from '../../Entry1D';
+import { FilterDomainUpdateRules } from '../../FiltersManager';
+export declare const id = "apodization";
+export declare const name = "Apodization";
+export declare const DOMAIN_UPDATE_RULES: Readonly<FilterDomainUpdateRules>;
+export interface ApodizationOptions {
+    lineBroadening: number;
+    gaussBroadening: number;
+    lineBroadeningCenter: number;
+}
+export declare function apply(datum1D: Entry1D, options: ApodizationOptions): void;
+export declare function isApplicable(datum1D: Entry1D): datum1D is Entry1D & {
+    data: Required<Data1D>;
+};
+export declare function reduce(previousValue: any, newValue: any): {
+    once: boolean;
+    reduce: any;
+};
+export declare function apodizationFilter(datum1D: Entry1D & {
+    data: Required<Data1D>;
+}, options: ApodizationOptions): {
+    windowData: Float64Array;
+    re: import("cheminfo-types").DoubleArray;
+    im: import("cheminfo-types").DoubleArray;
+};

package/lib/datum/data1d/filter1d/apodization.js

@@ -0,0 +1,75 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.apodizationFilter = exports.reduce = exports.isApplicable = exports.apply = exports.DOMAIN_UPDATE_RULES = exports.name = exports.id = void 0;
+const apodization_1 = require("../../../apodization/apodization");
+exports.id = 'apodization';
+exports.name = 'Apodization';
+exports.DOMAIN_UPDATE_RULES = {
+    updateXDomain: true,
+    updateYDomain: false,
+};
+function apply(datum1D, options) {
+    if (!isApplicable(datum1D)) {
+        throw new Error('apodization not applicable on this data');
+    }
+    const newData = apodizationFilter(datum1D, options);
+    datum1D.data = {
+        ...datum1D.data,
+        re: newData.re,
+        im: newData.im,
+    };
+}
+exports.apply = apply;
+function isApplicable(datum1D) {
+    if (datum1D.info.isComplex && datum1D.info.isFid)
+        return true;
+    return false;
+}
+exports.isApplicable = isApplicable;
+function reduce(previousValue, newValue) {
+    return {
+        once: true,
+        reduce: newValue,
+    };
+}
+exports.reduce = reduce;
+function apodizationFilter(datum1D, options) {
+    var _a;
+    const { lineBroadening, gaussBroadening, lineBroadeningCenter } = options;
+    let grpdly = ((_a = datum1D.info) === null || _a === void 0 ? void 0 : _a.digitalFilter) || 0;
+    let pointsToShift;
+    if (grpdly > 0) {
+        pointsToShift = Math.floor(grpdly);
+    }
+    else {
+        pointsToShift = 0;
+    }
+    const re = datum1D.data.re;
+    const im = datum1D.data.im;
+    const t = datum1D.data.x;
+    const length = re.length;
+    const dw = (t[length - 1] - t[0]) / (length - 1); //REPLACE CONSTANT with calculated value... : for this we need AQ or DW to set it right...
+    return (0, apodization_1.apodization)({ re, im }, {
+        pointsToShift,
+        compose: {
+            length,
+            shapes: [
+                {
+                    start: 0,
+                    shape: {
+                        kind: 'lorentzToGauss',
+                        options: {
+                            length,
+                            dw,
+                            exponentialHz: gaussBroadening > 0 ? lineBroadening : -lineBroadening,
+                            gaussianHz: gaussBroadening,
+                            center: lineBroadeningCenter,
+                        },
+                    },
+                },
+            ],
+        },
+    });
+}
+exports.apodizationFilter = apodizationFilter;
+//# sourceMappingURL=apodization.js.map

package/lib/datum/data1d/filter1d/apodization.js.map

@@ -0,0 +1 @@
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package/lib/datum/data1d/filter1d/baselineCorrection.d.ts

@@ -0,0 +1,32 @@
+import { Entry1D } from '../../Entry1D';
+import { FilterDomainUpdateRules } from '../../FiltersManager';
+export declare const id = "baselineCorrection";
+export declare const name = "Baseline correction";
+export declare const DOMAIN_UPDATE_RULES: Readonly<FilterDomainUpdateRules>;
+export type BaselineAlgorithms = 'airpls' | 'polynomial';
+export interface PolynomialOptions {
+    zones: Array<{
+        from: number;
+        to: number;
+        id: string;
+    }>;
+    algorithm: 'polynomial';
+    degree: number;
+}
+export interface AirplsOptions {
+    zones: Array<{
+        from: number;
+        to: number;
+        id: string;
+    }>;
+    algorithm: 'airpls';
+    maxIterations: number;
+    tolerance: number;
+}
+export type BaselineCorrectionOptions = PolynomialOptions | AirplsOptions;
+export declare function apply(datum1D: Entry1D, options: BaselineCorrectionOptions): void;
+export declare function isApplicable(datum1D: Entry1D): boolean;
+export declare function reduce(previousValue: BaselineCorrectionOptions, newValue: BaselineCorrectionOptions): {
+    once: boolean;
+    reduce: BaselineCorrectionOptions;
+};

package/lib/datum/data1d/filter1d/baselineCorrection.js

@@ -0,0 +1,61 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.reduce = exports.isApplicable = exports.apply = exports.DOMAIN_UPDATE_RULES = exports.name = exports.id = void 0;
+const ml_airpls_1 = __importDefault(require("ml-airpls"));
+const ml_baseline_correction_regression_1 = __importDefault(require("ml-baseline-correction-regression"));
+const ml_spectra_processing_1 = require("ml-spectra-processing");
+exports.id = 'baselineCorrection';
+exports.name = 'Baseline correction';
+exports.DOMAIN_UPDATE_RULES = {
+    updateXDomain: false,
+    updateYDomain: true,
+};
+function apply(datum1D, options) {
+    if (!isApplicable(datum1D)) {
+        throw new Error('baselineCorrection not applicable on this data');
+    }
+    const { algorithm } = options;
+    let { x, re } = datum1D.data;
+    let corrected;
+    switch (algorithm) {
+        case 'airpls':
+            corrected = (0, ml_airpls_1.default)(x, re, options).corrected;
+            break;
+        case 'polynomial':
+            {
+                const { degree, zones } = options;
+                let reduced = (0, ml_spectra_processing_1.xyEquallySpaced)({ x, y: re }, { numberOfPoints: 4096, zones });
+                let result = (0, ml_baseline_correction_regression_1.default)(reduced.x, reduced.y, {
+                    regressionOptions: degree,
+                });
+                let { regression } = result;
+                corrected = new Float64Array(x.length);
+                for (let i = 0; i < re.length; i++) {
+                    corrected[i] = re[i] - regression.predict(x[i]);
+                }
+            }
+            break;
+        default:
+            // eslint-disable-next-line @typescript-eslint/restrict-template-expressions
+            throw new Error(`baselineCorrection: algorithm unknown: ${algorithm}`);
+    }
+    Object.assign(datum1D.data, { re: corrected });
+}
+exports.apply = apply;
+function isApplicable(datum1D) {
+    if (!datum1D.info.isFid)
+        return true;
+    return false;
+}
+exports.isApplicable = isApplicable;
+function reduce(previousValue, newValue) {
+    return {
+        once: true,
+        reduce: newValue,
+    };
+}
+exports.reduce = reduce;
+//# sourceMappingURL=baselineCorrection.js.map

package/lib/datum/data1d/filter1d/baselineCorrection.js.map

@@ -0,0 +1 @@
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package/lib/datum/data1d/filter1d/digitalFilter.d.ts

@@ -0,0 +1,18 @@
+import { Data1D } from '../../../types/Data1D';
+import { Entry1D } from '../../Entry1D';
+import { FilterDomainUpdateRules } from '../../FiltersManager';
+export declare const id = "digitalFilter";
+export declare const name = "Digital Filter";
+export declare const DOMAIN_UPDATE_RULES: Readonly<FilterDomainUpdateRules>;
+/**
+ * Move points from the beginning to the end of FID and performs a first order phase correction
+ * @param {Datum1d} datum1d
+ */
+export declare function apply(datum1D: Entry1D, options?: any): void;
+export declare function isApplicable(datum1D: Entry1D): datum1D is Entry1D & {
+    data: Required<Data1D>;
+};
+export declare function reduce(): {
+    once: boolean;
+    reduce: undefined;
+};

package/lib/datum/data1d/filter1d/digitalFilter.js

@@ -0,0 +1,47 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.reduce = exports.isApplicable = exports.apply = exports.DOMAIN_UPDATE_RULES = exports.name = exports.id = void 0;
+exports.id = 'digitalFilter';
+exports.name = 'Digital Filter';
+exports.DOMAIN_UPDATE_RULES = {
+    updateXDomain: true,
+    updateYDomain: true,
+};
+/**
+ * Move points from the beginning to the end of FID and performs a first order phase correction
+ * @param {Datum1d} datum1d
+ */
+function apply(datum1D, options = {}) {
+    if (!isApplicable(datum1D)) {
+        throw new Error('Digital Filter is not applicable on this data');
+    }
+    let { digitalFilterValue = 0 } = options;
+    let re = new Float64Array(datum1D.data.re);
+    let im = new Float64Array(datum1D.data.im || []);
+    let pointsToShift = Math.floor(digitalFilterValue);
+    const skip = 0;
+    pointsToShift += 0;
+    const newRe = new Float64Array(re.length);
+    const newIm = new Float64Array(im.length);
+    newRe.set(re.slice(pointsToShift));
+    newRe.set(re.slice(skip, pointsToShift), re.length - pointsToShift);
+    newIm.set(im.slice(pointsToShift));
+    newIm.set(im.slice(skip, pointsToShift), im.length - pointsToShift);
+    datum1D.data.re = newRe;
+    datum1D.data.im = newIm;
+}
+exports.apply = apply;
+function isApplicable(datum1D) {
+    if (datum1D.info.isComplex && datum1D.info.isFid)
+        return true;
+    return false;
+}
+exports.isApplicable = isApplicable;
+function reduce() {
+    return {
+        once: true,
+        reduce: undefined,
+    };
+}
+exports.reduce = reduce;
+//# sourceMappingURL=digitalFilter.js.map

package/lib/datum/data1d/filter1d/digitalFilter.js.map

@@ -0,0 +1 @@
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package/lib/datum/data1d/filter1d/equallySpaced.d.ts

@@ -0,0 +1,29 @@
+import { Entry1D } from '../../Entry1D';
+export declare const id = "equallySpaced";
+export declare const name = "Equally spaced";
+/**
+ * Equally Spaced
+ * **
+ * Function that returns a Number array of equally spaced numberOfPoints
+ * containing a representation of intensities of the spectra arguments x
+ * and y.
+ *
+ * The options parameter contains an object in the following form:
+ * from: starting point
+ * to: last point
+ * numberOfPoints: number of points between from and to
+ * variant: "slot" or "smooth" - smooth is the default option
+ *
+ * The slot variant consist that each point in the new array is calculated
+ * averaging the existing points between the slot that belongs to the current
+ * value. The smooth variant is the same but takes the integral of the range
+ * of the slot and divide by the step size between two points in the new array.
+ *
+ * @param {Array<{from:number;to:number}>} options.exclusions
+ */
+export declare function apply(spectrum: Entry1D, options?: any): void;
+export declare function isApplicable(spectrum: Entry1D): boolean;
+export declare function reduce(): {
+    once: boolean;
+    reduce: null;
+};

package/lib/datum/data1d/filter1d/equallySpaced.js

@@ -0,0 +1,55 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.reduce = exports.isApplicable = exports.apply = exports.name = exports.id = void 0;
+const ml_spectra_processing_1 = require("ml-spectra-processing");
+exports.id = 'equallySpaced';
+exports.name = 'Equally spaced';
+/**
+ * Equally Spaced
+ * **
+ * Function that returns a Number array of equally spaced numberOfPoints
+ * containing a representation of intensities of the spectra arguments x
+ * and y.
+ *
+ * The options parameter contains an object in the following form:
+ * from: starting point
+ * to: last point
+ * numberOfPoints: number of points between from and to
+ * variant: "slot" or "smooth" - smooth is the default option
+ *
+ * The slot variant consist that each point in the new array is calculated
+ * averaging the existing points between the slot that belongs to the current
+ * value. The smooth variant is the same but takes the integral of the range
+ * of the slot and divide by the step size between two points in the new array.
+ *
+ * @param {Array<{from:number;to:number}>} options.exclusions
+ */
+function apply(spectrum, options = {}) {
+    if (!isApplicable(spectrum)) {
+        throw new Error('Equally Spaced is not applicable on this data');
+    }
+    const { from, to, numberOfPoints, exclusions } = options;
+    const { x, re, im } = spectrum.data;
+    const XREdata = (0, ml_spectra_processing_1.xyEquallySpaced)({ x, y: re }, { from, to, numberOfPoints, exclusions });
+    spectrum.data.x = (0, ml_spectra_processing_1.xEnsureFloat64)(XREdata.x);
+    spectrum.data.re = (0, ml_spectra_processing_1.xEnsureFloat64)(XREdata.y);
+    if (im) {
+        const XIMdata = (0, ml_spectra_processing_1.xyEquallySpaced)({ x, y: re }, { from, to, numberOfPoints, exclusions });
+        spectrum.data.im = (0, ml_spectra_processing_1.xEnsureFloat64)(XIMdata.y);
+    }
+}
+exports.apply = apply;
+function isApplicable(spectrum) {
+    if (spectrum.info.isComplex && !spectrum.info.isFid)
+        return true;
+    return false;
+}
+exports.isApplicable = isApplicable;
+function reduce() {
+    return {
+        once: false,
+        reduce: null,
+    };
+}
+exports.reduce = reduce;
+//# sourceMappingURL=equallySpaced.js.map

package/lib/datum/data1d/filter1d/equallySpaced.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"equallySpaced.js","sourceRoot":"","sources":["../../../../src/datum/data1d/filter1d/equallySpaced.ts"],"names":[],"mappings":";;;AAAA,iEAAwE;AAI3D,QAAA,EAAE,GAAG,eAAe,CAAC;AACrB,QAAA,IAAI,GAAG,gBAAgB,CAAC;AAErC;;;;;;;;;;;;;;;;;;;GAmBG;AAEH,SAAgB,KAAK,CAAC,QAAiB,EAAE,UAAe,EAAE;IACxD,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,EAAE;QAC3B,MAAM,IAAI,KAAK,CAAC,+CAA+C,CAAC,CAAC;KAClE;IACD,MAAM,EAAE,IAAI,EAAE,EAAE,EAAE,cAAc,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC;IACzD,MAAM,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,GAAG,QAAQ,CAAC,IAAI,CAAC;IACpC,MAAM,OAAO,GAAG,IAAA,uCAAe,EAC7B,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,EACZ,EAAE,IAAI,EAAE,EAAE,EAAE,cAAc,EAAE,UAAU,EAAE,CACzC,CAAC;IAEF,QAAQ,CAAC,IAAI,CAAC,CAAC,GAAG,IAAA,sCAAc,EAAC,OAAO,CAAC,CAAC,CAAC,CAAC;IAC5C,QAAQ,CAAC,IAAI,CAAC,EAAE,GAAG,IAAA,sCAAc,EAAC,OAAO,CAAC,CAAC,CAAC,CAAC;IAC7C,IAAI,EAAE,EAAE;QACN,MAAM,OAAO,GAAG,IAAA,uCAAe,EAC7B,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,EACZ,EAAE,IAAI,EAAE,EAAE,EAAE,cAAc,EAAE,UAAU,EAAE,CACzC,CAAC;QACF,QAAQ,CAAC,IAAI,CAAC,EAAE,GAAG,IAAA,sCAAc,EAAC,OAAO,CAAC,CAAC,CAAC,CAAC;KAC9C;AACH,CAAC;AApBD,sBAoBC;AAED,SAAgB,YAAY,CAAC,QAAiB;IAC5C,IAAI,QAAQ,CAAC,IAAI,CAAC,SAAS,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK;QAAE,OAAO,IAAI,CAAC;IACjE,OAAO,KAAK,CAAC;AACf,CAAC;AAHD,oCAGC;AAED,SAAgB,MAAM;IACpB,OAAO;QACL,IAAI,EAAE,KAAK;QACX,MAAM,EAAE,IAAI;KACb,CAAC;AACJ,CAAC;AALD,wBAKC"}

package/lib/datum/data1d/filter1d/exclusionZones.d.ts

@@ -0,0 +1,11 @@
+import { Entry1D } from '../../Entry1D';
+import { FilterDomainUpdateRules } from '../../FiltersManager';
+export declare const id = "exclusionZones";
+export declare const name = "Exclusion zones";
+export declare const DOMAIN_UPDATE_RULES: Readonly<FilterDomainUpdateRules>;
+export declare function apply(spectrum: Entry1D, zones?: never[]): void;
+export declare function isApplicable(spectrum: Entry1D): boolean;
+export declare function reduce(previousValue: any, newValue: any): {
+    once: boolean;
+    reduce: import("cheminfo-types").FromTo[];
+};

package/lib/datum/data1d/filter1d/exclusionZones.js

@@ -0,0 +1,35 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.reduce = exports.isApplicable = exports.apply = exports.DOMAIN_UPDATE_RULES = exports.name = exports.id = void 0;
+const ml_spectra_processing_1 = require("ml-spectra-processing");
+exports.id = 'exclusionZones';
+exports.name = 'Exclusion zones';
+exports.DOMAIN_UPDATE_RULES = {
+    updateXDomain: false,
+    updateYDomain: false,
+};
+function apply(spectrum, zones = []) {
+    if (!isApplicable(spectrum)) {
+        throw new Error('Exclusion Zones filter not applicable on this data');
+    }
+    const { x, re, im } = spectrum.data;
+    spectrum.data.re = Float64Array.from((0, ml_spectra_processing_1.xySetYValue)({ x, y: re }, { zones }).y);
+    spectrum.data.im = im
+        ? Float64Array.from((0, ml_spectra_processing_1.xySetYValue)({ x, y: re }, { zones }).y)
+        : im;
+}
+exports.apply = apply;
+function isApplicable(spectrum) {
+    if (spectrum.info.isFt)
+        return true;
+    return false;
+}
+exports.isApplicable = isApplicable;
+function reduce(previousValue, newValue) {
+    return {
+        once: true,
+        reduce: (0, ml_spectra_processing_1.zonesNormalize)(previousValue.concat(newValue)),
+    };
+}
+exports.reduce = reduce;
+//# sourceMappingURL=exclusionZones.js.map

package/lib/datum/data1d/filter1d/exclusionZones.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"exclusionZones.js","sourceRoot":"","sources":["../../../../src/datum/data1d/filter1d/exclusionZones.ts"],"names":[],"mappings":";;;AAAA,iEAAoE;AAKvD,QAAA,EAAE,GAAG,gBAAgB,CAAC;AACtB,QAAA,IAAI,GAAG,iBAAiB,CAAC;AACzB,QAAA,mBAAmB,GAAsC;IACpE,aAAa,EAAE,KAAK;IACpB,aAAa,EAAE,KAAK;CACrB,CAAC;AAEF,SAAgB,KAAK,CAAC,QAAiB,EAAE,KAAK,GAAG,EAAE;IACjD,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,EAAE;QAC3B,MAAM,IAAI,KAAK,CAAC,oDAAoD,CAAC,CAAC;KACvE;IACD,MAAM,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,GAAG,QAAQ,CAAC,IAAI,CAAC;IACpC,QAAQ,CAAC,IAAI,CAAC,EAAE,GAAG,YAAY,CAAC,IAAI,CAAC,IAAA,mCAAW,EAAC,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7E,QAAQ,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE;QACnB,CAAC,CAAC,YAAY,CAAC,IAAI,CAAC,IAAA,mCAAW,EAAC,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC;QAC3D,CAAC,CAAC,EAAE,CAAC;AACT,CAAC;AATD,sBASC;AAED,SAAgB,YAAY,CAAC,QAAiB;IAC5C,IAAI,QAAQ,CAAC,IAAI,CAAC,IAAI;QAAE,OAAO,IAAI,CAAC;IACpC,OAAO,KAAK,CAAC;AACf,CAAC;AAHD,oCAGC;AAED,SAAgB,MAAM,CAAC,aAAkB,EAAE,QAAa;IACtD,OAAO;QACL,IAAI,EAAE,IAAI;QACV,MAAM,EAAE,IAAA,sCAAc,EAAC,aAAa,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;KACvD,CAAC;AACJ,CAAC;AALD,wBAKC"}

package/lib/datum/data1d/filter1d/fft.d.ts

@@ -0,0 +1,14 @@
+import { Data1D } from '../../../types/Data1D';
+import { Entry1D } from '../../Entry1D';
+import { FilterDomainUpdateRules } from '../../FiltersManager';
+export declare const id = "fft";
+export declare const name = "FFT";
+export declare const DOMAIN_UPDATE_RULES: Readonly<FilterDomainUpdateRules>;
+export declare function apply(datum1D: Entry1D): void;
+export declare function isApplicable(datum1D: Entry1D): datum1D is Entry1D & {
+    data: Required<Data1D>;
+};
+export declare function reduce(): {
+    once: boolean;
+    reduce: undefined;
+};

package/lib/datum/data1d/filter1d/fft.js

@@ -0,0 +1,94 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.reduce = exports.isApplicable = exports.apply = exports.DOMAIN_UPDATE_RULES = exports.name = exports.id = void 0;
+const ml_spectra_processing_1 = require("ml-spectra-processing");
+const padDataToNextPowerOfTwo_1 = require("./utils/padDataToNextPowerOfTwo");
+exports.id = 'fft';
+exports.name = 'FFT';
+exports.DOMAIN_UPDATE_RULES = {
+    updateXDomain: true,
+    updateYDomain: true,
+};
+function apply(datum1D) {
+    if (!isApplicable(datum1D)) {
+        throw new Error('fft not applicable on this data');
+    }
+    checkSameLength(datum1D);
+    let digitalFilterApplied = datum1D.filters.some((e) => e.name === 'digitalFilter' && e.flag);
+    const { info: { aqMod }, } = datum1D;
+    if (aqMod === 1) {
+        removeDCOffset(datum1D, digitalFilterApplied);
+    }
+    if (!isPowerOfTwo(datum1D.data.x.length)) {
+        (0, padDataToNextPowerOfTwo_1.padDataToNextPowerOfTwo)(datum1D, digitalFilterApplied);
+    }
+    const { data, info } = datum1D;
+    Object.assign(data, (0, ml_spectra_processing_1.reimFFT)({
+        re: data.re,
+        im: data.im,
+    }, { applyZeroShift: true }));
+    if (digitalFilterApplied) {
+        let { digitalFilter = 0 } = info;
+        let ph1 = (digitalFilter - Math.floor(digitalFilter)) * Math.PI * 2;
+        Object.assign(data, (0, ml_spectra_processing_1.reimPhaseCorrection)(data, 0, -ph1, { reverse: true }));
+    }
+    datum1D.data.x = generateXAxis(datum1D);
+    datum1D.info = { ...datum1D.info, isFid: false, isFt: true };
+}
+exports.apply = apply;
+function isApplicable(datum1D) {
+    if (datum1D.info.isComplex && datum1D.info.isFid)
+        return true;
+    return false;
+}
+exports.isApplicable = isApplicable;
+function reduce() {
+    return {
+        once: true,
+        reduce: undefined,
+    };
+}
+exports.reduce = reduce;
+function generateXAxis(datum1D) {
+    const info = datum1D.info;
+    const baseFrequency = Number.parseFloat(info.baseFrequency);
+    const frequencyOffset = Number.parseFloat(info.frequencyOffset);
+    const spectralWidth = Number.parseFloat(info.spectralWidth);
+    const offset = frequencyOffset / baseFrequency;
+    let spectralHalfWidth = 0.5 * spectralWidth;
+    let nbPoints = datum1D.data.x.length;
+    let firstPoint = offset - spectralHalfWidth;
+    let dx = spectralWidth / (nbPoints - 1);
+    const xAxis = new Float64Array(nbPoints);
+    for (let i = 0; i < nbPoints; i++) {
+        xAxis[i] = firstPoint;
+        firstPoint += dx;
+    }
+    return xAxis;
+}
+function isPowerOfTwo(n) {
+    return n !== 0 && (n & (n - 1)) === 0;
+}
+function removeDCOffset(spectrum, digitalFilterApplied) {
+    let { digitalFilter = 0 } = digitalFilterApplied ? spectrum.info : {};
+    const data = spectrum.data;
+    const nbPoints = data.re.length;
+    const newRe = new Float64Array(data.re);
+    const newIm = new Float64Array(data.im);
+    const averageRe = (0, ml_spectra_processing_1.xMean)(data.re.slice((nbPoints * 0.75) >> 0, nbPoints - digitalFilter));
+    const averageIm = (0, ml_spectra_processing_1.xMean)(data.im.slice((nbPoints * 0.75) >> 0, nbPoints - digitalFilter));
+    for (let i = digitalFilterApplied ? 0 : digitalFilter; i < nbPoints - digitalFilter; i++) {
+        newRe[i] -= averageRe;
+        newIm[i] -= averageIm;
+    }
+    Object.assign(spectrum.data, { re: newRe, im: newIm });
+    return spectrum;
+}
+function checkSameLength(spectrum) {
+    var _a;
+    const { data } = spectrum;
+    if (data.x.length !== data.re.length || data.x.length !== ((_a = data.im) === null || _a === void 0 ? void 0 : _a.length)) {
+        throw new Error('The length of data should be equal');
+    }
+}
+//# sourceMappingURL=fft.js.map

package/lib/datum/data1d/filter1d/fft.js.map

@@ -0,0 +1 @@
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package/lib/datum/data1d/filter1d/phaseCorrection.d.ts

@@ -0,0 +1,33 @@
+import { Data1D } from '../../../types/Data1D';
+import { Entry1D } from '../../Entry1D';
+import { FilterDomainUpdateRules } from '../../FiltersManager';
+export declare const id = "phaseCorrection";
+export declare const name = "Phase correction";
+export declare const DOMAIN_UPDATE_RULES: Readonly<FilterDomainUpdateRules>;
+export interface PhaseCorrectionParameters {
+    ph0: number;
+    ph1: number;
+    absolute: boolean;
+}
+/**
+ *
+ * @param {Datum1d} datum1d
+ * @param {Object} [options={}]
+ * @param {number} [options.ph0=0]
+ * @param {number} [options.ph1=0]
+ */
+export declare function apply(datum1D: Entry1D, options?: any): void;
+export interface AutoPhaseCorrectionOptions {
+    minRegSize?: number;
+    maxDistanceToJoin?: number;
+    magnitudeMode?: boolean;
+    factorNoise?: number;
+    reverse?: boolean;
+}
+export declare function isApplicable(spectrum: Entry1D): spectrum is Entry1D & {
+    data: Required<Data1D>;
+};
+export declare function reduce(previousValue: PhaseCorrectionParameters, newValue: PhaseCorrectionParameters): {
+    once: boolean;
+    reduce: PhaseCorrectionParameters;
+};