molstar 3.8.2 → 3.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -202
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +109 -106
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/app.d.ts +5 -2
- package/lib/apps/viewer/app.js +11 -7
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +109 -106
- package/lib/cli/cif2bcif/converter.js +1 -1
- package/lib/commonjs/apps/viewer/app.d.ts +5 -2
- package/lib/commonjs/apps/viewer/app.js +12 -7
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.d.ts +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +4 -1
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +3 -3
- package/lib/commonjs/extensions/alpha-orbitals/density.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/density.js +6 -2
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +6 -3
- package/lib/commonjs/extensions/anvil/algorithm.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
- package/lib/commonjs/extensions/cellpack/state.js +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +1 -1
- package/lib/commonjs/extensions/g3d/model.js +1 -1
- package/lib/commonjs/extensions/geo-export/ui.js +1 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +1 -1
- package/lib/commonjs/extensions/mp4-export/ui.js +1 -0
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +4 -4
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +7 -7
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +14 -14
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +5 -5
- package/lib/commonjs/mol-canvas3d/passes/draw.js +34 -5
- package/lib/commonjs/mol-canvas3d/passes/fxaa.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/marking.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +9 -0
- package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +18 -5
- package/lib/commonjs/mol-canvas3d/passes/pick.js +125 -24
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +4 -0
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +4 -0
- package/lib/commonjs/mol-data/db/column.js +5 -5
- package/lib/commonjs/mol-data/db/table.js +2 -2
- package/lib/commonjs/mol-data/util/array.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +13 -0
- package/lib/commonjs/mol-gl/compute/grid3d.d.ts +2 -2
- package/lib/commonjs/mol-gl/compute/grid3d.js +30 -8
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +6 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +6 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +6 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -10
- package/lib/commonjs/mol-gl/renderer.js +77 -32
- package/lib/commonjs/mol-gl/scene.js +2 -0
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/lines.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/points.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/text.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +41 -9
- package/lib/commonjs/mol-gl/webgl/compat.d.ts +34 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +50 -2
- package/lib/commonjs/mol-gl/webgl/context.d.ts +2 -0
- package/lib/commonjs/mol-gl/webgl/context.js +3 -0
- package/lib/commonjs/mol-gl/webgl/extensions.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/extensions.js +6 -1
- package/lib/commonjs/mol-gl/webgl/timer.d.ts +22 -0
- package/lib/commonjs/mol-gl/webgl/timer.js +169 -0
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +18 -18
- package/lib/commonjs/mol-io/common/binary-cif/decoder.js +16 -16
- package/lib/commonjs/mol-io/common/binary-cif/encoding.js +9 -9
- package/lib/commonjs/mol-io/reader/cif/binary/field.js +3 -3
- package/lib/commonjs/mol-io/reader/cif/data-model.js +14 -14
- package/lib/commonjs/mol-io/reader/cif/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +23 -23
- package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +1 -1
- package/lib/commonjs/mol-io/reader/common/text/column/token.js +1 -1
- package/lib/commonjs/mol-io/reader/common/text/number-parser.js +6 -6
- package/lib/commonjs/mol-io/reader/csv/parser.js +8 -8
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -10
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +7 -7
- package/lib/commonjs/mol-io/writer/cif/encoder.js +8 -8
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +4 -4
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +13 -2
- package/lib/commonjs/mol-model/sequence/alignment/sequence.js +3 -3
- package/lib/commonjs/mol-model/sequence/sequence.js +9 -9
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +3 -3
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
- package/lib/commonjs/mol-model/structure/export/categories/utils.js +1 -1
- package/lib/commonjs/mol-model/structure/model/model.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +6 -6
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.js +116 -116
- package/lib/commonjs/mol-model/structure/query/context.js +1 -1
- package/lib/commonjs/mol-model/structure/query/queries/generators.js +5 -5
- package/lib/commonjs/mol-model/structure/query/queries/internal.js +4 -4
- package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +4 -4
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +9 -9
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +3 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +192 -108
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/element/stats.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/structure.js +11 -11
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +4 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +2 -2
- package/lib/commonjs/mol-model/structure/structure/unit/resonance.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +6 -6
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +6 -6
- package/lib/commonjs/mol-model/structure/structure/unit.js +16 -16
- package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.js +1 -1
- package/lib/commonjs/mol-model/structure/util.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -2
- package/lib/commonjs/mol-model-formats/structure/basic/parser.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/basic/properties.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/sort.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/util.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/cif-core.js +6 -6
- package/lib/commonjs/mol-model-formats/structure/common/entity.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/cube.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/gro.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/mol.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/mol2.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/prmtop.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +3 -3
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +6 -6
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +8 -8
- package/lib/commonjs/mol-model-formats/structure/psf.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/top.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/xyz.js +1 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +2 -2
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +3 -3
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +2 -2
- package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +31 -31
- package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +22 -22
- package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +32 -32
- package/lib/commonjs/mol-model-props/computed/interactions/charged.js +39 -39
- package/lib/commonjs/mol-model-props/computed/interactions/common.js +34 -34
- package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/halogen-bonds.js +12 -12
- package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +32 -32
- package/lib/commonjs/mol-model-props/computed/interactions/hydrophobic.js +9 -9
- package/lib/commonjs/mol-model-props/computed/interactions/metal.js +26 -26
- package/lib/commonjs/mol-model-props/computed/interactions/refine.js +20 -20
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +1 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +12 -12
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +6 -6
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +3 -3
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +11 -11
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +3 -3
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +30 -30
- package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +1 -1
- package/lib/commonjs/mol-model-props/computed/themes/interaction-type.js +10 -10
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +1 -1
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +3 -3
- package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +1 -1
- package/lib/commonjs/mol-model-props/sequence/themes/sifts-mapping.js +1 -1
- package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -1
- package/lib/commonjs/mol-plugin/animation-loop.js +18 -5
- package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +12 -12
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +7 -7
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/config.d.ts +3 -0
- package/lib/commonjs/mol-plugin/config.js +3 -1
- package/lib/commonjs/mol-plugin/context.d.ts +2 -2
- package/lib/commonjs/mol-plugin/context.js +3 -0
- package/lib/commonjs/mol-plugin/state.d.ts +1 -14
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +12 -11
- package/lib/commonjs/mol-plugin-state/formats/volume.js +20 -13
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +5 -5
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/controls.js +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +1 -1
- package/lib/commonjs/mol-plugin-ui/state/snapshots.js +1 -0
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +1 -1
- package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +1 -0
- package/lib/commonjs/mol-plugin-ui/viewport.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/representation.js +2 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.js +2 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/units-visual.js +2 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +12 -15
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +12 -15
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +16 -16
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +4 -4
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/common.js +3 -3
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +30 -30
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +6 -6
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +3 -3
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +20 -20
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +6 -6
- package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/volume/representation.js +2 -1
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +2 -2
- package/lib/commonjs/mol-script/runtime/query/table.js +13 -13
- package/lib/commonjs/mol-state/object.d.ts +3 -3
- package/lib/commonjs/mol-task/util/user-timing.js +1 -1
- package/lib/commonjs/mol-theme/clipping.js +19 -19
- package/lib/commonjs/mol-theme/color/atom-id.js +1 -1
- package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +1 -1
- package/lib/commonjs/mol-theme/color/chain-id.js +4 -4
- package/lib/commonjs/mol-theme/color/element-index.js +1 -1
- package/lib/commonjs/mol-theme/color/element-symbol.js +1 -1
- package/lib/commonjs/mol-theme/color/entity-id.js +4 -4
- package/lib/commonjs/mol-theme/color/entity-source.js +5 -4
- package/lib/commonjs/mol-theme/color/hydrophobicity.js +1 -1
- package/lib/commonjs/mol-theme/color/illustrative.js +1 -1
- package/lib/commonjs/mol-theme/color/model-index.js +1 -1
- package/lib/commonjs/mol-theme/color/molecule-type.js +8 -8
- package/lib/commonjs/mol-theme/color/occupancy.js +1 -1
- package/lib/commonjs/mol-theme/color/operator-hkl.js +1 -1
- package/lib/commonjs/mol-theme/color/operator-name.js +1 -1
- package/lib/commonjs/mol-theme/color/partial-charge.js +1 -1
- package/lib/commonjs/mol-theme/color/polymer-id.js +4 -4
- package/lib/commonjs/mol-theme/color/polymer-index.js +1 -1
- package/lib/commonjs/mol-theme/color/residue-name.js +1 -1
- package/lib/commonjs/mol-theme/color/secondary-structure.js +12 -12
- package/lib/commonjs/mol-theme/color/sequence-id.js +7 -7
- package/lib/commonjs/mol-theme/color/shape-group.js +1 -1
- package/lib/commonjs/mol-theme/color/uncertainty.js +1 -1
- package/lib/commonjs/mol-theme/color/uniform.js +1 -1
- package/lib/commonjs/mol-theme/color/unit-index.js +1 -1
- package/lib/commonjs/mol-theme/color/volume-value.js +1 -1
- package/lib/commonjs/mol-theme/label.js +3 -3
- package/lib/commonjs/mol-util/binding.js +4 -4
- package/lib/commonjs/mol-util/debug.d.ts +6 -1
- package/lib/commonjs/mol-util/debug.js +11 -1
- package/lib/commonjs/mol-util/input/input-observer.js +20 -20
- package/lib/commonjs/mol-util/string-builder.js +1 -1
- package/lib/commonjs/servers/model/preprocess/converter.js +1 -1
- package/lib/commonjs/servers/model/server/query.js +1 -1
- package/lib/commonjs/servers/model/utils/fetch-retry.js +3 -2
- package/lib/commonjs/servers/volume/server/algebra/coordinate.js +6 -6
- package/lib/commonjs/servers/volume/server/query/encode.js +1 -1
- package/lib/examples/alpha-orbitals/index.d.ts +1 -1
- package/lib/examples/alpha-orbitals/index.html +72 -61
- package/lib/examples/alpha-orbitals/index.js +4 -1
- package/lib/examples/basic-wrapper/custom-theme.js +1 -1
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/coloring.js +3 -3
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/alpha-orbitals/density.d.ts +1 -1
- package/lib/extensions/alpha-orbitals/density.js +6 -2
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buttons = 2 /* Secondary */ & 4 /* Auxilary */;
|
|
305
|
-
button = 2 /* Secondary */;
|
|
304
|
+
buttons = 2 /* ButtonsType.Flag.Secondary */ & 4 /* ButtonsType.Flag.Auxilary */;
|
|
305
|
+
button = 2 /* ButtonsType.Flag.Secondary */;
|
|
306
306
|
onPointerDown(getCenterTouch(ev));
|
|
307
307
|
var touchDistance = getTouchDistance(ev);
|
|
308
308
|
lastTouchDistance = touchDistance;
|
|
@@ -318,7 +318,7 @@ var InputObserver;
|
|
|
318
318
|
});
|
|
319
319
|
}
|
|
320
320
|
else if (ev.touches.length === 3) {
|
|
321
|
-
buttons = button = 8 /* Forth */;
|
|
321
|
+
buttons = button = 8 /* ButtonsType.Flag.Forth */;
|
|
322
322
|
onPointerDown(getCenterTouch(ev));
|
|
323
323
|
}
|
|
324
324
|
}
|
|
@@ -326,7 +326,7 @@ var InputObserver;
|
|
|
326
326
|
endDrag();
|
|
327
327
|
}
|
|
328
328
|
function onTouchMove(ev) {
|
|
329
|
-
button = 0 /* None */;
|
|
329
|
+
button = 0 /* ButtonsType.Flag.None */;
|
|
330
330
|
if (noPinchZoom) {
|
|
331
331
|
ev.preventDefault();
|
|
332
332
|
ev.stopPropagation();
|
|
@@ -336,18 +336,18 @@ var InputObserver;
|
|
|
336
336
|
}
|
|
337
337
|
}
|
|
338
338
|
if (ev.touches.length === 1) {
|
|
339
|
-
buttons = 1 /* Primary */;
|
|
339
|
+
buttons = 1 /* ButtonsType.Flag.Primary */;
|
|
340
340
|
onPointerMove(ev.touches[0]);
|
|
341
341
|
}
|
|
342
342
|
else if (ev.touches.length === 2) {
|
|
343
343
|
var touchDistance = getTouchDistance(ev);
|
|
344
344
|
var touchDelta = lastTouchDistance - touchDistance;
|
|
345
345
|
if (Math.abs(touchDelta) < 4) {
|
|
346
|
-
buttons = 2 /* Secondary */;
|
|
346
|
+
buttons = 2 /* ButtonsType.Flag.Secondary */;
|
|
347
347
|
onPointerMove(getCenterTouch(ev));
|
|
348
348
|
}
|
|
349
349
|
else {
|
|
350
|
-
buttons = 4 /* Auxilary */;
|
|
350
|
+
buttons = 4 /* ButtonsType.Flag.Auxilary */;
|
|
351
351
|
updateModifierKeys(ev);
|
|
352
352
|
var fraction = lastTouchDistance / touchDistance;
|
|
353
353
|
pinch.next({
|
|
@@ -365,7 +365,7 @@ var InputObserver;
|
|
|
365
365
|
lastTouchDistance = touchDistance;
|
|
366
366
|
}
|
|
367
367
|
else if (ev.touches.length === 3) {
|
|
368
|
-
buttons = 8 /* Forth */;
|
|
368
|
+
buttons = 8 /* ButtonsType.Flag.Forth */;
|
|
369
369
|
onPointerMove(getCenterTouch(ev));
|
|
370
370
|
}
|
|
371
371
|
}
|
|
@@ -373,7 +373,7 @@ var InputObserver;
|
|
|
373
373
|
updateModifierKeys(ev);
|
|
374
374
|
buttons = getButtons(ev);
|
|
375
375
|
button = getButton(ev);
|
|
376
|
-
if (noMiddleClickScroll && buttons === 4 /* Auxilary */) {
|
|
376
|
+
if (noMiddleClickScroll && buttons === 4 /* ButtonsType.Flag.Auxilary */) {
|
|
377
377
|
ev.preventDefault;
|
|
378
378
|
}
|
|
379
379
|
onPointerDown(ev);
|
|
@@ -381,7 +381,7 @@ var InputObserver;
|
|
|
381
381
|
function onMouseMove(ev) {
|
|
382
382
|
updateModifierKeys(ev);
|
|
383
383
|
buttons = getButtons(ev);
|
|
384
|
-
button = 0 /* None */;
|
|
384
|
+
button = 0 /* ButtonsType.Flag.None */;
|
|
385
385
|
onPointerMove(ev);
|
|
386
386
|
}
|
|
387
387
|
function onMouseUp(ev) {
|
|
@@ -400,11 +400,11 @@ var InputObserver;
|
|
|
400
400
|
eventOffset(pointerStart, ev);
|
|
401
401
|
Vec2.copy(pointerDown, pointerStart);
|
|
402
402
|
if (insideBounds(pointerStart)) {
|
|
403
|
-
dragging = 1 /* Started */;
|
|
403
|
+
dragging = 1 /* DraggingState.Started */;
|
|
404
404
|
}
|
|
405
405
|
}
|
|
406
406
|
function onPointerUp(ev) {
|
|
407
|
-
dragging = 0 /* Stopped */;
|
|
407
|
+
dragging = 0 /* DraggingState.Stopped */;
|
|
408
408
|
if (!mask(ev.clientX, ev.clientY))
|
|
409
409
|
return;
|
|
410
410
|
eventOffset(pointerEnd, ev);
|
|
@@ -421,7 +421,7 @@ var InputObserver;
|
|
|
421
421
|
var x = pointerEnd[0], y = pointerEnd[1];
|
|
422
422
|
var inside = insideBounds(pointerEnd);
|
|
423
423
|
move.next({ x: x, y: y, pageX: pageX, pageY: pageY, buttons: buttons, button: button, modifiers: getModifierKeys(), inside: inside });
|
|
424
|
-
if (dragging === 0 /* Stopped */)
|
|
424
|
+
if (dragging === 0 /* DraggingState.Stopped */)
|
|
425
425
|
return;
|
|
426
426
|
if (noTextSelect) {
|
|
427
427
|
(_a = ev.preventDefault) === null || _a === void 0 ? void 0 : _a.call(ev);
|
|
@@ -429,13 +429,13 @@ var InputObserver;
|
|
|
429
429
|
Vec2.div(pointerDelta, Vec2.sub(pointerDelta, pointerEnd, pointerStart), getClientSize(rectSize));
|
|
430
430
|
if (Vec2.magnitude(pointerDelta) < EPSILON)
|
|
431
431
|
return;
|
|
432
|
-
var isStart = dragging === 1 /* Started */;
|
|
432
|
+
var isStart = dragging === 1 /* DraggingState.Started */;
|
|
433
433
|
if (isStart && !mask(ev.clientX, ev.clientY))
|
|
434
434
|
return;
|
|
435
435
|
var dx = pointerDelta[0], dy = pointerDelta[1];
|
|
436
436
|
drag.next({ x: x, y: y, dx: dx, dy: dy, pageX: pageX, pageY: pageY, buttons: buttons, button: button, modifiers: getModifierKeys(), isStart: isStart });
|
|
437
437
|
Vec2.copy(pointerStart, pointerEnd);
|
|
438
|
-
dragging = 2 /* Moving */;
|
|
438
|
+
dragging = 2 /* DraggingState.Moving */;
|
|
439
439
|
}
|
|
440
440
|
function onMouseWheel(ev) {
|
|
441
441
|
if (!mask(ev.clientX, ev.clientY))
|
|
@@ -447,7 +447,7 @@ var InputObserver;
|
|
|
447
447
|
ev.preventDefault();
|
|
448
448
|
}
|
|
449
449
|
var normalized = normalizeWheel(ev);
|
|
450
|
-
buttons = button = 4 /* Auxilary */;
|
|
450
|
+
buttons = button = 4 /* ButtonsType.Flag.Auxilary */;
|
|
451
451
|
if (normalized.dx || normalized.dy || normalized.dz) {
|
|
452
452
|
wheel.next(__assign(__assign({ x: x, y: y, pageX: pageX, pageY: pageY }, normalized), { buttons: buttons, button: button, modifiers: getModifierKeys() }));
|
|
453
453
|
}
|
|
@@ -17,7 +17,7 @@ function getCategoryInstanceProvider(cat, fields) {
|
|
|
17
17
|
function classify(name, field) {
|
|
18
18
|
var type = getCifFieldType(field);
|
|
19
19
|
if (type['@type'] === 'str') {
|
|
20
|
-
return { name: name, type: 0 /* Str */, value: field.str, valueKind: field.valueKind };
|
|
20
|
+
return { name: name, type: 0 /* CifWriter.Field.Type.Str */, value: field.str, valueKind: field.valueKind };
|
|
21
21
|
}
|
|
22
22
|
else if (type['@type'] === 'float') {
|
|
23
23
|
return CifWriter.Field.float(name, field.float, { valueKind: field.valueKind, typedArray: Float64Array });
|
|
@@ -313,7 +313,7 @@ export function abortingObserver(p) {
|
|
|
313
313
|
}
|
|
314
314
|
function string(name, str, isSpecified) {
|
|
315
315
|
if (isSpecified) {
|
|
316
|
-
return CifField.str(name, function (i, d) { return str(d, i); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Present */ : 1 /* NotPresent */; } });
|
|
316
|
+
return CifField.str(name, function (i, d) { return str(d, i); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Column.ValueKind.Present */ : 1 /* Column.ValueKind.NotPresent */; } });
|
|
317
317
|
}
|
|
318
318
|
return CifField.str(name, function (i, d) { return str(d, i); });
|
|
319
319
|
}
|
|
@@ -15,13 +15,14 @@ function isRetriableNetworkError(error) {
|
|
|
15
15
|
}
|
|
16
16
|
export function fetchRetry(url, timeout, retryCount, onRetry) {
|
|
17
17
|
return __awaiter(this, void 0, void 0, function () {
|
|
18
|
-
var controller, id, result;
|
|
18
|
+
var controller, id, signal, result;
|
|
19
19
|
return __generator(this, function (_a) {
|
|
20
20
|
switch (_a.label) {
|
|
21
21
|
case 0:
|
|
22
22
|
controller = new AbortController();
|
|
23
23
|
id = setTimeout(function () { return controller.abort(); }, timeout);
|
|
24
|
-
|
|
24
|
+
signal = controller.signal;
|
|
25
|
+
return [4 /*yield*/, retryIf(function () { return fetch(url, { signal: signal }); }, {
|
|
25
26
|
retryThenIf: function (r) { return r.status === 408 /** timeout */ || r.status === 429 /** too many requests */ || (r.status >= 500 && r.status < 600); },
|
|
26
27
|
// TODO test retryCatchIf
|
|
27
28
|
retryCatchIf: function (e) { return isRetriableNetworkError(e); },
|
|
@@ -15,19 +15,19 @@ export function domain(kind, info) {
|
|
|
15
15
|
};
|
|
16
16
|
}
|
|
17
17
|
export function cartesian(x, y, z) {
|
|
18
|
-
return { 0: x, 1: y, 2: z, kind: 0 /* Cartesian */ };
|
|
18
|
+
return { 0: x, 1: y, 2: z, kind: 0 /* Space.Cartesian */ };
|
|
19
19
|
}
|
|
20
20
|
export function fractional(x, y, z) {
|
|
21
|
-
return { 0: x, 1: y, 2: z, kind: 1 /* Fractional */ };
|
|
21
|
+
return { 0: x, 1: y, 2: z, kind: 1 /* Space.Fractional */ };
|
|
22
22
|
}
|
|
23
23
|
export function grid(domain, x, y, z) {
|
|
24
|
-
return { 0: x, 1: y, 2: z, kind: 2 /* Grid */, domain: domain };
|
|
24
|
+
return { 0: x, 1: y, 2: z, kind: 2 /* Space.Grid */, domain: domain };
|
|
25
25
|
}
|
|
26
26
|
export function withCoord(a, x, y, z) {
|
|
27
27
|
switch (a.kind) {
|
|
28
|
-
case 0 /* Cartesian */: return cartesian(x, y, z);
|
|
29
|
-
case 1 /* Fractional */: return fractional(x, y, z);
|
|
30
|
-
case 2 /* Grid */: return grid(a.domain, x, y, z);
|
|
28
|
+
case 0 /* Space.Cartesian */: return cartesian(x, y, z);
|
|
29
|
+
case 1 /* Space.Fractional */: return fractional(x, y, z);
|
|
30
|
+
case 2 /* Space.Grid */: return grid(a.domain, x, y, z);
|
|
31
31
|
}
|
|
32
32
|
}
|
|
33
33
|
export function clone(a) {
|
|
@@ -17,7 +17,7 @@ export function encode(query, output) {
|
|
|
17
17
|
}
|
|
18
18
|
function string(name, str, isSpecified) {
|
|
19
19
|
if (isSpecified) {
|
|
20
|
-
return CifWriter.Field.str(name, function (i, d) { return str(d); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Present */ : 1 /* NotPresent */; } });
|
|
20
|
+
return CifWriter.Field.str(name, function (i, d) { return str(d); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Column.ValueKind.Present */ : 1 /* Column.ValueKind.NotPresent */; } });
|
|
21
21
|
}
|
|
22
22
|
return CifWriter.Field.str(name, function (i, d) { return str(d); });
|
|
23
23
|
}
|
package/package.json
CHANGED
|
@@ -1,162 +1,162 @@
|
|
|
1
|
-
{
|
|
2
|
-
"name": "molstar",
|
|
3
|
-
"version": "3.
|
|
4
|
-
"description": "A comprehensive macromolecular library.",
|
|
5
|
-
"homepage": "https://github.com/molstar/molstar#readme",
|
|
6
|
-
"repository": {
|
|
7
|
-
"type": "git",
|
|
8
|
-
"url": "https://github.com/molstar/molstar.git"
|
|
9
|
-
},
|
|
10
|
-
"bugs": {
|
|
11
|
-
"url": "https://github.com/molstar/molstar/issues"
|
|
12
|
-
},
|
|
13
|
-
"scripts": {
|
|
14
|
-
"lint": "eslint .",
|
|
15
|
-
"lint-fix": "eslint . --fix",
|
|
16
|
-
"test": "npm install --no-save \"gl@^5.0.0\" && npm run lint && jest",
|
|
17
|
-
"jest": "jest",
|
|
18
|
-
"build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
|
|
19
|
-
"clean": "node ./scripts/clean.js",
|
|
20
|
-
"rebuild": "npm run clean && npm run build",
|
|
21
|
-
"build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
|
|
22
|
-
"build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
|
|
23
|
-
"build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
|
|
24
|
-
"build-webpack": "webpack --mode production --config ./webpack.config.production.js",
|
|
25
|
-
"build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
|
|
26
|
-
"watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
|
|
27
|
-
"watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
|
|
28
|
-
"watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
|
|
29
|
-
"watch-tsc": "tsc --watch --incremental",
|
|
30
|
-
"watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
|
|
31
|
-
"watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
|
|
32
|
-
"watch-webpack": "webpack -w --mode development --stats minimal",
|
|
33
|
-
"watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
|
|
34
|
-
"watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
|
|
35
|
-
"serve": "http-server -p 1338 -g",
|
|
36
|
-
"model-server": "node lib/commonjs/servers/model/server.js",
|
|
37
|
-
"model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
|
|
38
|
-
"volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
|
|
39
|
-
"plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
|
|
40
|
-
"preversion": "npm run test",
|
|
41
|
-
"version": "npm run rebuild && cpx .npmignore lib/",
|
|
42
|
-
"postversion": "git push && git push --tags"
|
|
43
|
-
},
|
|
44
|
-
"files": [
|
|
45
|
-
"lib/",
|
|
46
|
-
"build/viewer/"
|
|
47
|
-
],
|
|
48
|
-
"bin": {
|
|
49
|
-
"cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
|
|
50
|
-
"cifschema": "lib/commonjs/cli/cifschema/index.js",
|
|
51
|
-
"model-server": "lib/commonjs/servers/model/server.js",
|
|
52
|
-
"model-server-query": "lib/commonjs/servers/model/query.js",
|
|
53
|
-
"model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
|
|
54
|
-
"volume-server": "lib/commonjs/servers/volume/server.js",
|
|
55
|
-
"volume-server-query": "lib/commonjs/servers/volume/query.js",
|
|
56
|
-
"volume-server-pack": "lib/commonjs/servers/volume/pack.js"
|
|
57
|
-
},
|
|
58
|
-
"nodemonConfig": {
|
|
59
|
-
"ignoreRoot": [
|
|
60
|
-
"./node_modules",
|
|
61
|
-
".git"
|
|
62
|
-
],
|
|
63
|
-
"ignore": [],
|
|
64
|
-
"delay": "2500"
|
|
65
|
-
},
|
|
66
|
-
"jest": {
|
|
67
|
-
"moduleFileExtensions": [
|
|
68
|
-
"ts",
|
|
69
|
-
"js"
|
|
70
|
-
],
|
|
71
|
-
"transform": {
|
|
72
|
-
"\\.ts$": "ts-jest"
|
|
73
|
-
},
|
|
74
|
-
"moduleDirectories": [
|
|
75
|
-
"node_modules",
|
|
76
|
-
"lib"
|
|
77
|
-
],
|
|
78
|
-
"testURL": "http://localhost/",
|
|
79
|
-
"testRegex": "\\.spec\\.ts$"
|
|
80
|
-
},
|
|
81
|
-
"author": "Mol* Contributors",
|
|
82
|
-
"contributors": [
|
|
83
|
-
"Alexander Rose <alexander.rose@weirdbyte.de>",
|
|
84
|
-
"David Sehnal <david.sehnal@gmail.com>",
|
|
85
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"Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
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"Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
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"Ludovic Autin <autin@scripps.edu>",
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"Michal Malý <michal.maly@ibt.cas.cz>",
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"Jiří Černý <jiri.cerny@ibt.cas.cz>",
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"Panagiotis Tourlas <panagiot_tourlov@hotmail.com>"
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],
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"license": "MIT",
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"devDependencies": {
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"@graphql-codegen/add": "^3.1.1",
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"@graphql-codegen/cli": "^2.6.2",
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"@graphql-codegen/time": "^3.1.1",
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"@graphql-codegen/typescript": "^2.
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"@graphql-codegen/typescript-graphql-files-modules": "^2.1.1",
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"@graphql-codegen/typescript-graphql-request": "^4.4.
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"@graphql-codegen/typescript-operations": "^2.4.
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"@types/cors": "^2.8.12",
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"@types/gl": "^4.1.0",
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"@types/jest": "^
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"@types/react": "^18.0.
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"@typescript-eslint/eslint-plugin": "^5.
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"benchmark": "^2.1.4",
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"concurrently": "^7.2.
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"cpx2": "^4.2.0",
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"crypto-browserify": "^3.12.0",
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"css-loader": "^6.7.1",
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"eslint": "^8.
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"extra-watch-webpack-plugin": "^1.0.3",
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"file-loader": "^6.2.0",
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"fs-extra": "^10.1.0",
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"graphql": "^16.5.0",
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"http-server": "^14.1.
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"sass": "^1.52.
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"style-loader": "^3.3.1",
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"@types/argparse": "^2.0.10",
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"@types/compression": "1.7.2",
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"@types/express": "^4.17.13",
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"@types/node": "^16.11.
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"@types/node-fetch": "^2.6.
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"@types/swagger-ui-dist": "3.30.1",
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"argparse": "^2.0.1",
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"body-parser": "^1.20.0",
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"compression": "^1.7.4",
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"cors": "^2.8.5",
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"express": "^4.18.1",
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"h264-mp4-encoder": "^1.0.12",
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"immer": "^9.0.
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"immutable": "^4.
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"xhr2": "^0.2.1"
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"peerDependencies": {
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"react": "^18.1.0 || ^17.0.2 || ^16.14.0",
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"react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
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}
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}
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{
|
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"name": "molstar",
|
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|
+
"version": "3.10.0",
|
|
4
|
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"description": "A comprehensive macromolecular library.",
|
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|
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"homepage": "https://github.com/molstar/molstar#readme",
|
|
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|
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"repository": {
|
|
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|
+
"type": "git",
|
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|
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"url": "https://github.com/molstar/molstar.git"
|
|
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|
+
},
|
|
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|
+
"bugs": {
|
|
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|
+
"url": "https://github.com/molstar/molstar/issues"
|
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|
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},
|
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|
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"scripts": {
|
|
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|
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"lint": "eslint .",
|
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|
+
"lint-fix": "eslint . --fix",
|
|
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|
+
"test": "npm install --no-save \"gl@^5.0.0\" && npm run lint && jest",
|
|
17
|
+
"jest": "jest",
|
|
18
|
+
"build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
|
|
19
|
+
"clean": "node ./scripts/clean.js",
|
|
20
|
+
"rebuild": "npm run clean && npm run build",
|
|
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|
+
"build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
|
|
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|
+
"build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
|
|
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|
+
"build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
|
|
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|
+
"build-webpack": "webpack --mode production --config ./webpack.config.production.js",
|
|
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|
+
"build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
|
|
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|
+
"watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
|
|
27
|
+
"watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
|
|
28
|
+
"watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
|
|
29
|
+
"watch-tsc": "tsc --watch --incremental",
|
|
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|
+
"watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
|
|
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|
+
"watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
|
|
32
|
+
"watch-webpack": "webpack -w --mode development --stats minimal",
|
|
33
|
+
"watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
|
|
34
|
+
"watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
|
|
35
|
+
"serve": "http-server -p 1338 -g",
|
|
36
|
+
"model-server": "node lib/commonjs/servers/model/server.js",
|
|
37
|
+
"model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
|
|
38
|
+
"volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
|
|
39
|
+
"plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
|
|
40
|
+
"preversion": "npm run test",
|
|
41
|
+
"version": "npm run rebuild && cpx .npmignore lib/",
|
|
42
|
+
"postversion": "git push && git push --tags"
|
|
43
|
+
},
|
|
44
|
+
"files": [
|
|
45
|
+
"lib/",
|
|
46
|
+
"build/viewer/"
|
|
47
|
+
],
|
|
48
|
+
"bin": {
|
|
49
|
+
"cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
|
|
50
|
+
"cifschema": "lib/commonjs/cli/cifschema/index.js",
|
|
51
|
+
"model-server": "lib/commonjs/servers/model/server.js",
|
|
52
|
+
"model-server-query": "lib/commonjs/servers/model/query.js",
|
|
53
|
+
"model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
|
|
54
|
+
"volume-server": "lib/commonjs/servers/volume/server.js",
|
|
55
|
+
"volume-server-query": "lib/commonjs/servers/volume/query.js",
|
|
56
|
+
"volume-server-pack": "lib/commonjs/servers/volume/pack.js"
|
|
57
|
+
},
|
|
58
|
+
"nodemonConfig": {
|
|
59
|
+
"ignoreRoot": [
|
|
60
|
+
"./node_modules",
|
|
61
|
+
".git"
|
|
62
|
+
],
|
|
63
|
+
"ignore": [],
|
|
64
|
+
"delay": "2500"
|
|
65
|
+
},
|
|
66
|
+
"jest": {
|
|
67
|
+
"moduleFileExtensions": [
|
|
68
|
+
"ts",
|
|
69
|
+
"js"
|
|
70
|
+
],
|
|
71
|
+
"transform": {
|
|
72
|
+
"\\.ts$": "ts-jest"
|
|
73
|
+
},
|
|
74
|
+
"moduleDirectories": [
|
|
75
|
+
"node_modules",
|
|
76
|
+
"lib"
|
|
77
|
+
],
|
|
78
|
+
"testURL": "http://localhost/",
|
|
79
|
+
"testRegex": "\\.spec\\.ts$"
|
|
80
|
+
},
|
|
81
|
+
"author": "Mol* Contributors",
|
|
82
|
+
"contributors": [
|
|
83
|
+
"Alexander Rose <alexander.rose@weirdbyte.de>",
|
|
84
|
+
"David Sehnal <david.sehnal@gmail.com>",
|
|
85
|
+
"Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
|
|
86
|
+
"Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
|
|
87
|
+
"Ludovic Autin <autin@scripps.edu>",
|
|
88
|
+
"Michal Malý <michal.maly@ibt.cas.cz>",
|
|
89
|
+
"Jiří Černý <jiri.cerny@ibt.cas.cz>",
|
|
90
|
+
"Panagiotis Tourlas <panagiot_tourlov@hotmail.com>"
|
|
91
|
+
],
|
|
92
|
+
"license": "MIT",
|
|
93
|
+
"devDependencies": {
|
|
94
|
+
"@graphql-codegen/add": "^3.1.1",
|
|
95
|
+
"@graphql-codegen/cli": "^2.6.2",
|
|
96
|
+
"@graphql-codegen/time": "^3.1.1",
|
|
97
|
+
"@graphql-codegen/typescript": "^2.5.1",
|
|
98
|
+
"@graphql-codegen/typescript-graphql-files-modules": "^2.1.1",
|
|
99
|
+
"@graphql-codegen/typescript-graphql-request": "^4.4.10",
|
|
100
|
+
"@graphql-codegen/typescript-operations": "^2.4.2",
|
|
101
|
+
"@types/cors": "^2.8.12",
|
|
102
|
+
"@types/gl": "^4.1.0",
|
|
103
|
+
"@types/jest": "^28.1.2",
|
|
104
|
+
"@types/react": "^18.0.14",
|
|
105
|
+
"@types/react-dom": "^18.0.5",
|
|
106
|
+
"@typescript-eslint/eslint-plugin": "^5.28.0",
|
|
107
|
+
"@typescript-eslint/parser": "^5.28.0",
|
|
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|
+
"benchmark": "^2.1.4",
|
|
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|
+
"concurrently": "^7.2.2",
|
|
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|
+
"cpx2": "^4.2.0",
|
|
111
|
+
"crypto-browserify": "^3.12.0",
|
|
112
|
+
"css-loader": "^6.7.1",
|
|
113
|
+
"eslint": "^8.18.0",
|
|
114
|
+
"extra-watch-webpack-plugin": "^1.0.3",
|
|
115
|
+
"file-loader": "^6.2.0",
|
|
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|
+
"fs-extra": "^10.1.0",
|
|
117
|
+
"graphql": "^16.5.0",
|
|
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|
+
"http-server": "^14.1.1",
|
|
119
|
+
"jest": "^28.1.1",
|
|
120
|
+
"mini-css-extract-plugin": "^2.6.1",
|
|
121
|
+
"path-browserify": "^1.0.1",
|
|
122
|
+
"raw-loader": "^4.0.2",
|
|
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|
+
"react": "^18.2.0",
|
|
124
|
+
"react-dom": "^18.2.0",
|
|
125
|
+
"sass": "^1.52.3",
|
|
126
|
+
"sass-loader": "^13.0.0",
|
|
127
|
+
"simple-git": "^3.8.0",
|
|
128
|
+
"stream-browserify": "^3.0.0",
|
|
129
|
+
"style-loader": "^3.3.1",
|
|
130
|
+
"ts-jest": "^28.0.5",
|
|
131
|
+
"typescript": "^4.7.4",
|
|
132
|
+
"webpack": "^5.73.0",
|
|
133
|
+
"webpack-cli": "^4.10.0"
|
|
134
|
+
},
|
|
135
|
+
"dependencies": {
|
|
136
|
+
"@types/argparse": "^2.0.10",
|
|
137
|
+
"@types/benchmark": "^2.1.1",
|
|
138
|
+
"@types/compression": "1.7.2",
|
|
139
|
+
"@types/express": "^4.17.13",
|
|
140
|
+
"@types/node": "^16.11.41",
|
|
141
|
+
"@types/node-fetch": "^2.6.2",
|
|
142
|
+
"@types/swagger-ui-dist": "3.30.1",
|
|
143
|
+
"argparse": "^2.0.1",
|
|
144
|
+
"body-parser": "^1.20.0",
|
|
145
|
+
"compression": "^1.7.4",
|
|
146
|
+
"cors": "^2.8.5",
|
|
147
|
+
"express": "^4.18.1",
|
|
148
|
+
"h264-mp4-encoder": "^1.0.12",
|
|
149
|
+
"immer": "^9.0.15",
|
|
150
|
+
"immutable": "^4.1.0",
|
|
151
|
+
"node-fetch": "^2.6.7",
|
|
152
|
+
"rxjs": "^7.5.5",
|
|
153
|
+
"swagger-ui-dist": "^4.12.0",
|
|
154
|
+
"tslib": "^2.4.0",
|
|
155
|
+
"util.promisify": "^1.1.1",
|
|
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|
+
"xhr2": "^0.2.1"
|
|
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|
+
},
|
|
158
|
+
"peerDependencies": {
|
|
159
|
+
"react": "^18.1.0 || ^17.0.2 || ^16.14.0",
|
|
160
|
+
"react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
|
|
161
|
+
}
|
|
162
|
+
}
|