molstar 3.8.2 → 3.10.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (596) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +109 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/viewer/app.d.ts +5 -2
  8. package/lib/apps/viewer/app.js +11 -7
  9. package/lib/apps/viewer/embedded.html +43 -43
  10. package/lib/apps/viewer/index.html +109 -106
  11. package/lib/cli/cif2bcif/converter.js +1 -1
  12. package/lib/commonjs/apps/viewer/app.d.ts +5 -2
  13. package/lib/commonjs/apps/viewer/app.js +12 -7
  14. package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
  15. package/lib/commonjs/examples/alpha-orbitals/index.d.ts +1 -1
  16. package/lib/commonjs/examples/alpha-orbitals/index.js +4 -1
  17. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +1 -1
  18. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +3 -3
  19. package/lib/commonjs/extensions/alpha-orbitals/density.d.ts +1 -1
  20. package/lib/commonjs/extensions/alpha-orbitals/density.js +6 -2
  21. package/lib/commonjs/extensions/alpha-orbitals/orbitals.d.ts +1 -1
  22. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +6 -3
  23. package/lib/commonjs/extensions/anvil/algorithm.js +1 -1
  24. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  25. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  26. package/lib/commonjs/extensions/cellpack/state.js +1 -1
  27. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +1 -1
  28. package/lib/commonjs/extensions/g3d/model.js +1 -1
  29. package/lib/commonjs/extensions/geo-export/ui.js +1 -0
  30. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +1 -1
  31. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +1 -1
  32. package/lib/commonjs/extensions/mp4-export/ui.js +1 -0
  33. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +1 -1
  34. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +4 -4
  35. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +1 -1
  36. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +2 -2
  37. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +1 -1
  38. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  39. package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
  40. package/lib/commonjs/mol-canvas3d/controls/trackball.js +7 -7
  41. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +14 -14
  42. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +5 -5
  43. package/lib/commonjs/mol-canvas3d/passes/draw.js +34 -5
  44. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +5 -0
  45. package/lib/commonjs/mol-canvas3d/passes/marking.js +5 -0
  46. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +9 -0
  47. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +18 -5
  48. package/lib/commonjs/mol-canvas3d/passes/pick.js +125 -24
  49. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +5 -0
  50. package/lib/commonjs/mol-canvas3d/passes/smaa.js +4 -0
  51. package/lib/commonjs/mol-canvas3d/passes/wboit.js +4 -0
  52. package/lib/commonjs/mol-data/db/column.js +5 -5
  53. package/lib/commonjs/mol-data/db/table.js +2 -2
  54. package/lib/commonjs/mol-data/util/array.d.ts +1 -1
  55. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  56. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  57. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  58. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +13 -0
  59. package/lib/commonjs/mol-gl/compute/grid3d.d.ts +2 -2
  60. package/lib/commonjs/mol-gl/compute/grid3d.js +30 -8
  61. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.d.ts +1 -1
  62. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +6 -1
  63. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.d.ts +1 -1
  64. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +6 -1
  65. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.d.ts +1 -1
  66. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +6 -1
  67. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +1 -1
  68. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -10
  69. package/lib/commonjs/mol-gl/renderer.js +77 -32
  70. package/lib/commonjs/mol-gl/scene.js +2 -0
  71. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  72. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  73. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  74. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  75. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  76. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  77. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  78. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  79. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  80. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  81. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  82. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  83. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  84. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  85. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +1 -1
  86. package/lib/commonjs/mol-gl/shader/lines.frag.js +1 -1
  87. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  88. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  89. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +1 -1
  90. package/lib/commonjs/mol-gl/shader/points.frag.js +1 -1
  91. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  92. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  93. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +1 -1
  94. package/lib/commonjs/mol-gl/shader/text.frag.js +1 -1
  95. package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
  96. package/lib/commonjs/mol-gl/shader-code.js +41 -9
  97. package/lib/commonjs/mol-gl/webgl/compat.d.ts +34 -1
  98. package/lib/commonjs/mol-gl/webgl/compat.js +50 -2
  99. package/lib/commonjs/mol-gl/webgl/context.d.ts +2 -0
  100. package/lib/commonjs/mol-gl/webgl/context.js +3 -0
  101. package/lib/commonjs/mol-gl/webgl/extensions.d.ts +3 -2
  102. package/lib/commonjs/mol-gl/webgl/extensions.js +6 -1
  103. package/lib/commonjs/mol-gl/webgl/timer.d.ts +22 -0
  104. package/lib/commonjs/mol-gl/webgl/timer.js +169 -0
  105. package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +18 -18
  106. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +16 -16
  107. package/lib/commonjs/mol-io/common/binary-cif/encoding.js +9 -9
  108. package/lib/commonjs/mol-io/reader/cif/binary/field.js +3 -3
  109. package/lib/commonjs/mol-io/reader/cif/data-model.js +14 -14
  110. package/lib/commonjs/mol-io/reader/cif/schema.js +1 -1
  111. package/lib/commonjs/mol-io/reader/cif/text/parser.js +23 -23
  112. package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +1 -1
  113. package/lib/commonjs/mol-io/reader/common/text/column/token.js +1 -1
  114. package/lib/commonjs/mol-io/reader/common/text/number-parser.js +6 -6
  115. package/lib/commonjs/mol-io/reader/csv/parser.js +8 -8
  116. package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -10
  117. package/lib/commonjs/mol-io/writer/cif/encoder/text.js +7 -7
  118. package/lib/commonjs/mol-io/writer/cif/encoder.js +8 -8
  119. package/lib/commonjs/mol-io/writer/mol2/encoder.js +4 -4
  120. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +13 -2
  121. package/lib/commonjs/mol-model/sequence/alignment/sequence.js +3 -3
  122. package/lib/commonjs/mol-model/sequence/sequence.js +9 -9
  123. package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +3 -3
  124. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  125. package/lib/commonjs/mol-model/structure/export/categories/utils.js +1 -1
  126. package/lib/commonjs/mol-model/structure/model/model.js +2 -2
  127. package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +6 -6
  128. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +1 -1
  129. package/lib/commonjs/mol-model/structure/model/types.js +116 -116
  130. package/lib/commonjs/mol-model/structure/query/context.js +1 -1
  131. package/lib/commonjs/mol-model/structure/query/queries/generators.js +5 -5
  132. package/lib/commonjs/mol-model/structure/query/queries/internal.js +4 -4
  133. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +4 -4
  134. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  135. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +9 -9
  136. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +3 -1
  137. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +192 -108
  138. package/lib/commonjs/mol-model/structure/structure/element/loci.js +5 -5
  139. package/lib/commonjs/mol-model/structure/structure/element/stats.js +5 -5
  140. package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
  141. package/lib/commonjs/mol-model/structure/structure/structure.js +11 -11
  142. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -5
  143. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +4 -4
  144. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +2 -2
  145. package/lib/commonjs/mol-model/structure/structure/unit/resonance.js +1 -1
  146. package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +6 -6
  147. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +6 -6
  148. package/lib/commonjs/mol-model/structure/structure/unit.js +16 -16
  149. package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.js +1 -1
  150. package/lib/commonjs/mol-model/structure/util.js +4 -4
  151. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -2
  152. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +4 -4
  153. package/lib/commonjs/mol-model-formats/structure/basic/properties.js +1 -1
  154. package/lib/commonjs/mol-model-formats/structure/basic/sort.js +1 -1
  155. package/lib/commonjs/mol-model-formats/structure/basic/util.js +1 -1
  156. package/lib/commonjs/mol-model-formats/structure/cif-core.js +6 -6
  157. package/lib/commonjs/mol-model-formats/structure/common/entity.js +1 -1
  158. package/lib/commonjs/mol-model-formats/structure/cube.js +1 -1
  159. package/lib/commonjs/mol-model-formats/structure/gro.js +1 -1
  160. package/lib/commonjs/mol-model-formats/structure/mol.js +1 -1
  161. package/lib/commonjs/mol-model-formats/structure/mol2.js +4 -4
  162. package/lib/commonjs/mol-model-formats/structure/prmtop.js +1 -1
  163. package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +3 -3
  164. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
  165. package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +6 -6
  166. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +8 -8
  167. package/lib/commonjs/mol-model-formats/structure/psf.js +1 -1
  168. package/lib/commonjs/mol-model-formats/structure/top.js +1 -1
  169. package/lib/commonjs/mol-model-formats/structure/xyz.js +1 -1
  170. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +2 -2
  171. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +3 -3
  172. package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +2 -2
  173. package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +31 -31
  174. package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +22 -22
  175. package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +32 -32
  176. package/lib/commonjs/mol-model-props/computed/interactions/charged.js +39 -39
  177. package/lib/commonjs/mol-model-props/computed/interactions/common.js +34 -34
  178. package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +1 -1
  179. package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +1 -1
  180. package/lib/commonjs/mol-model-props/computed/interactions/halogen-bonds.js +12 -12
  181. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +32 -32
  182. package/lib/commonjs/mol-model-props/computed/interactions/hydrophobic.js +9 -9
  183. package/lib/commonjs/mol-model-props/computed/interactions/metal.js +26 -26
  184. package/lib/commonjs/mol-model-props/computed/interactions/refine.js +20 -20
  185. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +2 -2
  186. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +2 -2
  187. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +1 -1
  188. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +12 -12
  189. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +6 -6
  190. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +3 -3
  191. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +11 -11
  192. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +3 -3
  193. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +30 -30
  194. package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +1 -1
  195. package/lib/commonjs/mol-model-props/computed/themes/interaction-type.js +10 -10
  196. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +1 -1
  197. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +3 -3
  198. package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +1 -1
  199. package/lib/commonjs/mol-model-props/sequence/themes/sifts-mapping.js +1 -1
  200. package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -1
  201. package/lib/commonjs/mol-plugin/animation-loop.js +18 -5
  202. package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +12 -12
  203. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +7 -7
  204. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  205. package/lib/commonjs/mol-plugin/config.d.ts +3 -0
  206. package/lib/commonjs/mol-plugin/config.js +3 -1
  207. package/lib/commonjs/mol-plugin/context.d.ts +2 -2
  208. package/lib/commonjs/mol-plugin/context.js +3 -0
  209. package/lib/commonjs/mol-plugin/state.d.ts +1 -14
  210. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +12 -11
  211. package/lib/commonjs/mol-plugin-state/formats/volume.js +20 -13
  212. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +5 -5
  213. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  214. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -1
  215. package/lib/commonjs/mol-plugin-ui/controls.js +1 -1
  216. package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +1 -1
  217. package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +1 -1
  218. package/lib/commonjs/mol-plugin-ui/state/snapshots.js +1 -0
  219. package/lib/commonjs/mol-plugin-ui/structure/focus.js +1 -1
  220. package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +1 -0
  221. package/lib/commonjs/mol-plugin-ui/viewport.d.ts +2 -2
  222. package/lib/commonjs/mol-repr/shape/representation.d.ts +1 -1
  223. package/lib/commonjs/mol-repr/shape/representation.js +2 -1
  224. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  225. package/lib/commonjs/mol-repr/structure/complex-visual.js +2 -1
  226. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  227. package/lib/commonjs/mol-repr/structure/units-visual.js +2 -1
  228. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +10 -10
  229. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +10 -10
  230. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +12 -15
  231. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +12 -15
  232. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +16 -16
  233. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
  234. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -0
  235. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +4 -4
  236. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
  237. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +2 -2
  238. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -2
  239. package/lib/commonjs/mol-repr/structure/visual/util/common.js +3 -3
  240. package/lib/commonjs/mol-repr/structure/visual/util/link.js +30 -30
  241. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +6 -6
  242. package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +3 -3
  243. package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +20 -20
  244. package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +6 -6
  245. package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
  246. package/lib/commonjs/mol-repr/volume/representation.js +2 -1
  247. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  248. package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +2 -2
  249. package/lib/commonjs/mol-script/runtime/query/table.js +13 -13
  250. package/lib/commonjs/mol-state/object.d.ts +3 -3
  251. package/lib/commonjs/mol-task/util/user-timing.js +1 -1
  252. package/lib/commonjs/mol-theme/clipping.js +19 -19
  253. package/lib/commonjs/mol-theme/color/atom-id.js +1 -1
  254. package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +1 -1
  255. package/lib/commonjs/mol-theme/color/chain-id.js +4 -4
  256. package/lib/commonjs/mol-theme/color/element-index.js +1 -1
  257. package/lib/commonjs/mol-theme/color/element-symbol.js +1 -1
  258. package/lib/commonjs/mol-theme/color/entity-id.js +4 -4
  259. package/lib/commonjs/mol-theme/color/entity-source.js +5 -4
  260. package/lib/commonjs/mol-theme/color/hydrophobicity.js +1 -1
  261. package/lib/commonjs/mol-theme/color/illustrative.js +1 -1
  262. package/lib/commonjs/mol-theme/color/model-index.js +1 -1
  263. package/lib/commonjs/mol-theme/color/molecule-type.js +8 -8
  264. package/lib/commonjs/mol-theme/color/occupancy.js +1 -1
  265. package/lib/commonjs/mol-theme/color/operator-hkl.js +1 -1
  266. package/lib/commonjs/mol-theme/color/operator-name.js +1 -1
  267. package/lib/commonjs/mol-theme/color/partial-charge.js +1 -1
  268. package/lib/commonjs/mol-theme/color/polymer-id.js +4 -4
  269. package/lib/commonjs/mol-theme/color/polymer-index.js +1 -1
  270. package/lib/commonjs/mol-theme/color/residue-name.js +1 -1
  271. package/lib/commonjs/mol-theme/color/secondary-structure.js +12 -12
  272. package/lib/commonjs/mol-theme/color/sequence-id.js +7 -7
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  574. package/lib/mol-theme/color/partial-charge.js +1 -1
  575. package/lib/mol-theme/color/polymer-id.js +4 -4
  576. package/lib/mol-theme/color/polymer-index.js +1 -1
  577. package/lib/mol-theme/color/residue-name.js +1 -1
  578. package/lib/mol-theme/color/secondary-structure.js +12 -12
  579. package/lib/mol-theme/color/sequence-id.js +7 -7
  580. package/lib/mol-theme/color/shape-group.js +1 -1
  581. package/lib/mol-theme/color/uncertainty.js +1 -1
  582. package/lib/mol-theme/color/uniform.js +1 -1
  583. package/lib/mol-theme/color/unit-index.js +1 -1
  584. package/lib/mol-theme/color/volume-value.js +1 -1
  585. package/lib/mol-theme/label.js +3 -3
  586. package/lib/mol-util/binding.js +4 -4
  587. package/lib/mol-util/debug.d.ts +6 -1
  588. package/lib/mol-util/debug.js +9 -1
  589. package/lib/mol-util/input/input-observer.js +20 -20
  590. package/lib/mol-util/string-builder.js +1 -1
  591. package/lib/servers/model/preprocess/converter.js +1 -1
  592. package/lib/servers/model/server/query.js +1 -1
  593. package/lib/servers/model/utils/fetch-retry.js +3 -2
  594. package/lib/servers/volume/server/algebra/coordinate.js +6 -6
  595. package/lib/servers/volume/server/query/encode.js +1 -1
  596. package/package.json +162 -162
@@ -149,10 +149,10 @@ var InputObserver;
149
149
  function getModifierKeys() {
150
150
  return __assign({}, modifierKeys);
151
151
  }
152
- var dragging = 0 /* Stopped */;
152
+ var dragging = 0 /* DraggingState.Stopped */;
153
153
  var disposed = false;
154
- var buttons = ButtonsType.create(0 /* None */);
155
- var button = 0 /* None */;
154
+ var buttons = ButtonsType.create(0 /* ButtonsType.Flag.None */);
155
+ var button = 0 /* ButtonsType.Flag.None */;
156
156
  var isInside = false;
157
157
  var events = createEvents();
158
158
  var drag = events.drag, interactionEnd = events.interactionEnd, wheel = events.wheel, pinch = events.pinch, gesture = events.gesture, click = events.click, move = events.move, leave = events.leave, enter = events.enter, resize = events.resize, modifiers = events.modifiers, key = events.key;
@@ -297,12 +297,12 @@ var InputObserver;
297
297
  function onTouchStart(ev) {
298
298
  ev.preventDefault();
299
299
  if (ev.touches.length === 1) {
300
- buttons = button = 1 /* Primary */;
300
+ buttons = button = 1 /* ButtonsType.Flag.Primary */;
301
301
  onPointerDown(ev.touches[0]);
302
302
  }
303
303
  else if (ev.touches.length === 2) {
304
- buttons = 2 /* Secondary */ & 4 /* Auxilary */;
305
- button = 2 /* Secondary */;
304
+ buttons = 2 /* ButtonsType.Flag.Secondary */ & 4 /* ButtonsType.Flag.Auxilary */;
305
+ button = 2 /* ButtonsType.Flag.Secondary */;
306
306
  onPointerDown(getCenterTouch(ev));
307
307
  var touchDistance = getTouchDistance(ev);
308
308
  lastTouchDistance = touchDistance;
@@ -318,7 +318,7 @@ var InputObserver;
318
318
  });
319
319
  }
320
320
  else if (ev.touches.length === 3) {
321
- buttons = button = 8 /* Forth */;
321
+ buttons = button = 8 /* ButtonsType.Flag.Forth */;
322
322
  onPointerDown(getCenterTouch(ev));
323
323
  }
324
324
  }
@@ -326,7 +326,7 @@ var InputObserver;
326
326
  endDrag();
327
327
  }
328
328
  function onTouchMove(ev) {
329
- button = 0 /* None */;
329
+ button = 0 /* ButtonsType.Flag.None */;
330
330
  if (noPinchZoom) {
331
331
  ev.preventDefault();
332
332
  ev.stopPropagation();
@@ -336,18 +336,18 @@ var InputObserver;
336
336
  }
337
337
  }
338
338
  if (ev.touches.length === 1) {
339
- buttons = 1 /* Primary */;
339
+ buttons = 1 /* ButtonsType.Flag.Primary */;
340
340
  onPointerMove(ev.touches[0]);
341
341
  }
342
342
  else if (ev.touches.length === 2) {
343
343
  var touchDistance = getTouchDistance(ev);
344
344
  var touchDelta = lastTouchDistance - touchDistance;
345
345
  if (Math.abs(touchDelta) < 4) {
346
- buttons = 2 /* Secondary */;
346
+ buttons = 2 /* ButtonsType.Flag.Secondary */;
347
347
  onPointerMove(getCenterTouch(ev));
348
348
  }
349
349
  else {
350
- buttons = 4 /* Auxilary */;
350
+ buttons = 4 /* ButtonsType.Flag.Auxilary */;
351
351
  updateModifierKeys(ev);
352
352
  var fraction = lastTouchDistance / touchDistance;
353
353
  pinch.next({
@@ -365,7 +365,7 @@ var InputObserver;
365
365
  lastTouchDistance = touchDistance;
366
366
  }
367
367
  else if (ev.touches.length === 3) {
368
- buttons = 8 /* Forth */;
368
+ buttons = 8 /* ButtonsType.Flag.Forth */;
369
369
  onPointerMove(getCenterTouch(ev));
370
370
  }
371
371
  }
@@ -373,7 +373,7 @@ var InputObserver;
373
373
  updateModifierKeys(ev);
374
374
  buttons = getButtons(ev);
375
375
  button = getButton(ev);
376
- if (noMiddleClickScroll && buttons === 4 /* Auxilary */) {
376
+ if (noMiddleClickScroll && buttons === 4 /* ButtonsType.Flag.Auxilary */) {
377
377
  ev.preventDefault;
378
378
  }
379
379
  onPointerDown(ev);
@@ -381,7 +381,7 @@ var InputObserver;
381
381
  function onMouseMove(ev) {
382
382
  updateModifierKeys(ev);
383
383
  buttons = getButtons(ev);
384
- button = 0 /* None */;
384
+ button = 0 /* ButtonsType.Flag.None */;
385
385
  onPointerMove(ev);
386
386
  }
387
387
  function onMouseUp(ev) {
@@ -400,11 +400,11 @@ var InputObserver;
400
400
  eventOffset(pointerStart, ev);
401
401
  Vec2.copy(pointerDown, pointerStart);
402
402
  if (insideBounds(pointerStart)) {
403
- dragging = 1 /* Started */;
403
+ dragging = 1 /* DraggingState.Started */;
404
404
  }
405
405
  }
406
406
  function onPointerUp(ev) {
407
- dragging = 0 /* Stopped */;
407
+ dragging = 0 /* DraggingState.Stopped */;
408
408
  if (!mask(ev.clientX, ev.clientY))
409
409
  return;
410
410
  eventOffset(pointerEnd, ev);
@@ -421,7 +421,7 @@ var InputObserver;
421
421
  var x = pointerEnd[0], y = pointerEnd[1];
422
422
  var inside = insideBounds(pointerEnd);
423
423
  move.next({ x: x, y: y, pageX: pageX, pageY: pageY, buttons: buttons, button: button, modifiers: getModifierKeys(), inside: inside });
424
- if (dragging === 0 /* Stopped */)
424
+ if (dragging === 0 /* DraggingState.Stopped */)
425
425
  return;
426
426
  if (noTextSelect) {
427
427
  (_a = ev.preventDefault) === null || _a === void 0 ? void 0 : _a.call(ev);
@@ -429,13 +429,13 @@ var InputObserver;
429
429
  Vec2.div(pointerDelta, Vec2.sub(pointerDelta, pointerEnd, pointerStart), getClientSize(rectSize));
430
430
  if (Vec2.magnitude(pointerDelta) < EPSILON)
431
431
  return;
432
- var isStart = dragging === 1 /* Started */;
432
+ var isStart = dragging === 1 /* DraggingState.Started */;
433
433
  if (isStart && !mask(ev.clientX, ev.clientY))
434
434
  return;
435
435
  var dx = pointerDelta[0], dy = pointerDelta[1];
436
436
  drag.next({ x: x, y: y, dx: dx, dy: dy, pageX: pageX, pageY: pageY, buttons: buttons, button: button, modifiers: getModifierKeys(), isStart: isStart });
437
437
  Vec2.copy(pointerStart, pointerEnd);
438
- dragging = 2 /* Moving */;
438
+ dragging = 2 /* DraggingState.Moving */;
439
439
  }
440
440
  function onMouseWheel(ev) {
441
441
  if (!mask(ev.clientX, ev.clientY))
@@ -447,7 +447,7 @@ var InputObserver;
447
447
  ev.preventDefault();
448
448
  }
449
449
  var normalized = normalizeWheel(ev);
450
- buttons = button = 4 /* Auxilary */;
450
+ buttons = button = 4 /* ButtonsType.Flag.Auxilary */;
451
451
  if (normalized.dx || normalized.dy || normalized.dz) {
452
452
  wheel.next(__assign(__assign({ x: x, y: y, pageX: pageX, pageY: pageY }, normalized), { buttons: buttons, button: button, modifiers: getModifierKeys() }));
453
453
  }
@@ -56,7 +56,7 @@ var StringBuilder;
56
56
  var __paddingSpaces = [];
57
57
  (function () {
58
58
  var s = '';
59
- for (var i = 0; i < 512 /* Count */; i++) {
59
+ for (var i = 0; i < 512 /* PaddingSpaces.Count */; i++) {
60
60
  __paddingSpaces[i] = s;
61
61
  s = s + ' ';
62
62
  }
@@ -17,7 +17,7 @@ function getCategoryInstanceProvider(cat, fields) {
17
17
  function classify(name, field) {
18
18
  var type = getCifFieldType(field);
19
19
  if (type['@type'] === 'str') {
20
- return { name: name, type: 0 /* Str */, value: field.str, valueKind: field.valueKind };
20
+ return { name: name, type: 0 /* CifWriter.Field.Type.Str */, value: field.str, valueKind: field.valueKind };
21
21
  }
22
22
  else if (type['@type'] === 'float') {
23
23
  return CifWriter.Field.float(name, field.float, { valueKind: field.valueKind, typedArray: Float64Array });
@@ -313,7 +313,7 @@ export function abortingObserver(p) {
313
313
  }
314
314
  function string(name, str, isSpecified) {
315
315
  if (isSpecified) {
316
- return CifField.str(name, function (i, d) { return str(d, i); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Present */ : 1 /* NotPresent */; } });
316
+ return CifField.str(name, function (i, d) { return str(d, i); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Column.ValueKind.Present */ : 1 /* Column.ValueKind.NotPresent */; } });
317
317
  }
318
318
  return CifField.str(name, function (i, d) { return str(d, i); });
319
319
  }
@@ -15,13 +15,14 @@ function isRetriableNetworkError(error) {
15
15
  }
16
16
  export function fetchRetry(url, timeout, retryCount, onRetry) {
17
17
  return __awaiter(this, void 0, void 0, function () {
18
- var controller, id, result;
18
+ var controller, id, signal, result;
19
19
  return __generator(this, function (_a) {
20
20
  switch (_a.label) {
21
21
  case 0:
22
22
  controller = new AbortController();
23
23
  id = setTimeout(function () { return controller.abort(); }, timeout);
24
- return [4 /*yield*/, retryIf(function () { return fetch(url, { signal: controller.signal }); }, {
24
+ signal = controller.signal;
25
+ return [4 /*yield*/, retryIf(function () { return fetch(url, { signal: signal }); }, {
25
26
  retryThenIf: function (r) { return r.status === 408 /** timeout */ || r.status === 429 /** too many requests */ || (r.status >= 500 && r.status < 600); },
26
27
  // TODO test retryCatchIf
27
28
  retryCatchIf: function (e) { return isRetriableNetworkError(e); },
@@ -15,19 +15,19 @@ export function domain(kind, info) {
15
15
  };
16
16
  }
17
17
  export function cartesian(x, y, z) {
18
- return { 0: x, 1: y, 2: z, kind: 0 /* Cartesian */ };
18
+ return { 0: x, 1: y, 2: z, kind: 0 /* Space.Cartesian */ };
19
19
  }
20
20
  export function fractional(x, y, z) {
21
- return { 0: x, 1: y, 2: z, kind: 1 /* Fractional */ };
21
+ return { 0: x, 1: y, 2: z, kind: 1 /* Space.Fractional */ };
22
22
  }
23
23
  export function grid(domain, x, y, z) {
24
- return { 0: x, 1: y, 2: z, kind: 2 /* Grid */, domain: domain };
24
+ return { 0: x, 1: y, 2: z, kind: 2 /* Space.Grid */, domain: domain };
25
25
  }
26
26
  export function withCoord(a, x, y, z) {
27
27
  switch (a.kind) {
28
- case 0 /* Cartesian */: return cartesian(x, y, z);
29
- case 1 /* Fractional */: return fractional(x, y, z);
30
- case 2 /* Grid */: return grid(a.domain, x, y, z);
28
+ case 0 /* Space.Cartesian */: return cartesian(x, y, z);
29
+ case 1 /* Space.Fractional */: return fractional(x, y, z);
30
+ case 2 /* Space.Grid */: return grid(a.domain, x, y, z);
31
31
  }
32
32
  }
33
33
  export function clone(a) {
@@ -17,7 +17,7 @@ export function encode(query, output) {
17
17
  }
18
18
  function string(name, str, isSpecified) {
19
19
  if (isSpecified) {
20
- return CifWriter.Field.str(name, function (i, d) { return str(d); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Present */ : 1 /* NotPresent */; } });
20
+ return CifWriter.Field.str(name, function (i, d) { return str(d); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Column.ValueKind.Present */ : 1 /* Column.ValueKind.NotPresent */; } });
21
21
  }
22
22
  return CifWriter.Field.str(name, function (i, d) { return str(d); });
23
23
  }
package/package.json CHANGED
@@ -1,162 +1,162 @@
1
- {
2
- "name": "molstar",
3
- "version": "3.8.2",
4
- "description": "A comprehensive macromolecular library.",
5
- "homepage": "https://github.com/molstar/molstar#readme",
6
- "repository": {
7
- "type": "git",
8
- "url": "https://github.com/molstar/molstar.git"
9
- },
10
- "bugs": {
11
- "url": "https://github.com/molstar/molstar/issues"
12
- },
13
- "scripts": {
14
- "lint": "eslint .",
15
- "lint-fix": "eslint . --fix",
16
- "test": "npm install --no-save \"gl@^5.0.0\" && npm run lint && jest",
17
- "jest": "jest",
18
- "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
19
- "clean": "node ./scripts/clean.js",
20
- "rebuild": "npm run clean && npm run build",
21
- "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
22
- "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
23
- "build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
24
- "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
25
- "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
26
- "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
27
- "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
28
- "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
29
- "watch-tsc": "tsc --watch --incremental",
30
- "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
31
- "watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
32
- "watch-webpack": "webpack -w --mode development --stats minimal",
33
- "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
34
- "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
35
- "serve": "http-server -p 1338 -g",
36
- "model-server": "node lib/commonjs/servers/model/server.js",
37
- "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
38
- "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
39
- "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
40
- "preversion": "npm run test",
41
- "version": "npm run rebuild && cpx .npmignore lib/",
42
- "postversion": "git push && git push --tags"
43
- },
44
- "files": [
45
- "lib/",
46
- "build/viewer/"
47
- ],
48
- "bin": {
49
- "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
50
- "cifschema": "lib/commonjs/cli/cifschema/index.js",
51
- "model-server": "lib/commonjs/servers/model/server.js",
52
- "model-server-query": "lib/commonjs/servers/model/query.js",
53
- "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
54
- "volume-server": "lib/commonjs/servers/volume/server.js",
55
- "volume-server-query": "lib/commonjs/servers/volume/query.js",
56
- "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
57
- },
58
- "nodemonConfig": {
59
- "ignoreRoot": [
60
- "./node_modules",
61
- ".git"
62
- ],
63
- "ignore": [],
64
- "delay": "2500"
65
- },
66
- "jest": {
67
- "moduleFileExtensions": [
68
- "ts",
69
- "js"
70
- ],
71
- "transform": {
72
- "\\.ts$": "ts-jest"
73
- },
74
- "moduleDirectories": [
75
- "node_modules",
76
- "lib"
77
- ],
78
- "testURL": "http://localhost/",
79
- "testRegex": "\\.spec\\.ts$"
80
- },
81
- "author": "Mol* Contributors",
82
- "contributors": [
83
- "Alexander Rose <alexander.rose@weirdbyte.de>",
84
- "David Sehnal <david.sehnal@gmail.com>",
85
- "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
86
- "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
87
- "Ludovic Autin <autin@scripps.edu>",
88
- "Michal Malý <michal.maly@ibt.cas.cz>",
89
- "Jiří Černý <jiri.cerny@ibt.cas.cz>",
90
- "Panagiotis Tourlas <panagiot_tourlov@hotmail.com>"
91
- ],
92
- "license": "MIT",
93
- "devDependencies": {
94
- "@graphql-codegen/add": "^3.1.1",
95
- "@graphql-codegen/cli": "^2.6.2",
96
- "@graphql-codegen/time": "^3.1.1",
97
- "@graphql-codegen/typescript": "^2.4.11",
98
- "@graphql-codegen/typescript-graphql-files-modules": "^2.1.1",
99
- "@graphql-codegen/typescript-graphql-request": "^4.4.8",
100
- "@graphql-codegen/typescript-operations": "^2.4.0",
101
- "@types/cors": "^2.8.12",
102
- "@types/gl": "^4.1.0",
103
- "@types/jest": "^27.5.1",
104
- "@types/react": "^18.0.9",
105
- "@types/react-dom": "^18.0.4",
106
- "@typescript-eslint/eslint-plugin": "^5.25.0",
107
- "@typescript-eslint/parser": "^5.25.0",
108
- "benchmark": "^2.1.4",
109
- "concurrently": "^7.2.0",
110
- "cpx2": "^4.2.0",
111
- "crypto-browserify": "^3.12.0",
112
- "css-loader": "^6.7.1",
113
- "eslint": "^8.16.0",
114
- "extra-watch-webpack-plugin": "^1.0.3",
115
- "file-loader": "^6.2.0",
116
- "fs-extra": "^10.1.0",
117
- "graphql": "^16.5.0",
118
- "http-server": "^14.1.0",
119
- "jest": "^28.1.0",
120
- "mini-css-extract-plugin": "^2.6.0",
121
- "path-browserify": "^1.0.1",
122
- "raw-loader": "^4.0.2",
123
- "react": "^18.1.0",
124
- "react-dom": "^18.1.0",
125
- "sass": "^1.52.1",
126
- "sass-loader": "^13.0.0",
127
- "simple-git": "^3.7.1",
128
- "stream-browserify": "^3.0.0",
129
- "style-loader": "^3.3.1",
130
- "ts-jest": "^28.0.2",
131
- "typescript": "^4.6.4",
132
- "webpack": "^5.72.1",
133
- "webpack-cli": "^4.9.2"
134
- },
135
- "dependencies": {
136
- "@types/argparse": "^2.0.10",
137
- "@types/benchmark": "^2.1.1",
138
- "@types/compression": "1.7.2",
139
- "@types/express": "^4.17.13",
140
- "@types/node": "^16.11.36",
141
- "@types/node-fetch": "^2.6.1",
142
- "@types/swagger-ui-dist": "3.30.1",
143
- "argparse": "^2.0.1",
144
- "body-parser": "^1.20.0",
145
- "compression": "^1.7.4",
146
- "cors": "^2.8.5",
147
- "express": "^4.18.1",
148
- "h264-mp4-encoder": "^1.0.12",
149
- "immer": "^9.0.14",
150
- "immutable": "^4.0.0",
151
- "node-fetch": "^2.6.7",
152
- "rxjs": "^7.5.5",
153
- "swagger-ui-dist": "^4.11.1",
154
- "tslib": "^2.4.0",
155
- "util.promisify": "^1.1.1",
156
- "xhr2": "^0.2.1"
157
- },
158
- "peerDependencies": {
159
- "react": "^18.1.0 || ^17.0.2 || ^16.14.0",
160
- "react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
161
- }
162
- }
1
+ {
2
+ "name": "molstar",
3
+ "version": "3.10.0",
4
+ "description": "A comprehensive macromolecular library.",
5
+ "homepage": "https://github.com/molstar/molstar#readme",
6
+ "repository": {
7
+ "type": "git",
8
+ "url": "https://github.com/molstar/molstar.git"
9
+ },
10
+ "bugs": {
11
+ "url": "https://github.com/molstar/molstar/issues"
12
+ },
13
+ "scripts": {
14
+ "lint": "eslint .",
15
+ "lint-fix": "eslint . --fix",
16
+ "test": "npm install --no-save \"gl@^5.0.0\" && npm run lint && jest",
17
+ "jest": "jest",
18
+ "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
19
+ "clean": "node ./scripts/clean.js",
20
+ "rebuild": "npm run clean && npm run build",
21
+ "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
22
+ "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
23
+ "build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
24
+ "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
25
+ "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
26
+ "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
27
+ "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
28
+ "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
29
+ "watch-tsc": "tsc --watch --incremental",
30
+ "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
31
+ "watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
32
+ "watch-webpack": "webpack -w --mode development --stats minimal",
33
+ "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
34
+ "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
35
+ "serve": "http-server -p 1338 -g",
36
+ "model-server": "node lib/commonjs/servers/model/server.js",
37
+ "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
38
+ "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
39
+ "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
40
+ "preversion": "npm run test",
41
+ "version": "npm run rebuild && cpx .npmignore lib/",
42
+ "postversion": "git push && git push --tags"
43
+ },
44
+ "files": [
45
+ "lib/",
46
+ "build/viewer/"
47
+ ],
48
+ "bin": {
49
+ "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
50
+ "cifschema": "lib/commonjs/cli/cifschema/index.js",
51
+ "model-server": "lib/commonjs/servers/model/server.js",
52
+ "model-server-query": "lib/commonjs/servers/model/query.js",
53
+ "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
54
+ "volume-server": "lib/commonjs/servers/volume/server.js",
55
+ "volume-server-query": "lib/commonjs/servers/volume/query.js",
56
+ "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
57
+ },
58
+ "nodemonConfig": {
59
+ "ignoreRoot": [
60
+ "./node_modules",
61
+ ".git"
62
+ ],
63
+ "ignore": [],
64
+ "delay": "2500"
65
+ },
66
+ "jest": {
67
+ "moduleFileExtensions": [
68
+ "ts",
69
+ "js"
70
+ ],
71
+ "transform": {
72
+ "\\.ts$": "ts-jest"
73
+ },
74
+ "moduleDirectories": [
75
+ "node_modules",
76
+ "lib"
77
+ ],
78
+ "testURL": "http://localhost/",
79
+ "testRegex": "\\.spec\\.ts$"
80
+ },
81
+ "author": "Mol* Contributors",
82
+ "contributors": [
83
+ "Alexander Rose <alexander.rose@weirdbyte.de>",
84
+ "David Sehnal <david.sehnal@gmail.com>",
85
+ "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
86
+ "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
87
+ "Ludovic Autin <autin@scripps.edu>",
88
+ "Michal Malý <michal.maly@ibt.cas.cz>",
89
+ "Jiří Černý <jiri.cerny@ibt.cas.cz>",
90
+ "Panagiotis Tourlas <panagiot_tourlov@hotmail.com>"
91
+ ],
92
+ "license": "MIT",
93
+ "devDependencies": {
94
+ "@graphql-codegen/add": "^3.1.1",
95
+ "@graphql-codegen/cli": "^2.6.2",
96
+ "@graphql-codegen/time": "^3.1.1",
97
+ "@graphql-codegen/typescript": "^2.5.1",
98
+ "@graphql-codegen/typescript-graphql-files-modules": "^2.1.1",
99
+ "@graphql-codegen/typescript-graphql-request": "^4.4.10",
100
+ "@graphql-codegen/typescript-operations": "^2.4.2",
101
+ "@types/cors": "^2.8.12",
102
+ "@types/gl": "^4.1.0",
103
+ "@types/jest": "^28.1.2",
104
+ "@types/react": "^18.0.14",
105
+ "@types/react-dom": "^18.0.5",
106
+ "@typescript-eslint/eslint-plugin": "^5.28.0",
107
+ "@typescript-eslint/parser": "^5.28.0",
108
+ "benchmark": "^2.1.4",
109
+ "concurrently": "^7.2.2",
110
+ "cpx2": "^4.2.0",
111
+ "crypto-browserify": "^3.12.0",
112
+ "css-loader": "^6.7.1",
113
+ "eslint": "^8.18.0",
114
+ "extra-watch-webpack-plugin": "^1.0.3",
115
+ "file-loader": "^6.2.0",
116
+ "fs-extra": "^10.1.0",
117
+ "graphql": "^16.5.0",
118
+ "http-server": "^14.1.1",
119
+ "jest": "^28.1.1",
120
+ "mini-css-extract-plugin": "^2.6.1",
121
+ "path-browserify": "^1.0.1",
122
+ "raw-loader": "^4.0.2",
123
+ "react": "^18.2.0",
124
+ "react-dom": "^18.2.0",
125
+ "sass": "^1.52.3",
126
+ "sass-loader": "^13.0.0",
127
+ "simple-git": "^3.8.0",
128
+ "stream-browserify": "^3.0.0",
129
+ "style-loader": "^3.3.1",
130
+ "ts-jest": "^28.0.5",
131
+ "typescript": "^4.7.4",
132
+ "webpack": "^5.73.0",
133
+ "webpack-cli": "^4.10.0"
134
+ },
135
+ "dependencies": {
136
+ "@types/argparse": "^2.0.10",
137
+ "@types/benchmark": "^2.1.1",
138
+ "@types/compression": "1.7.2",
139
+ "@types/express": "^4.17.13",
140
+ "@types/node": "^16.11.41",
141
+ "@types/node-fetch": "^2.6.2",
142
+ "@types/swagger-ui-dist": "3.30.1",
143
+ "argparse": "^2.0.1",
144
+ "body-parser": "^1.20.0",
145
+ "compression": "^1.7.4",
146
+ "cors": "^2.8.5",
147
+ "express": "^4.18.1",
148
+ "h264-mp4-encoder": "^1.0.12",
149
+ "immer": "^9.0.15",
150
+ "immutable": "^4.1.0",
151
+ "node-fetch": "^2.6.7",
152
+ "rxjs": "^7.5.5",
153
+ "swagger-ui-dist": "^4.12.0",
154
+ "tslib": "^2.4.0",
155
+ "util.promisify": "^1.1.1",
156
+ "xhr2": "^0.2.1"
157
+ },
158
+ "peerDependencies": {
159
+ "react": "^18.1.0 || ^17.0.2 || ^16.14.0",
160
+ "react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
161
+ }
162
+ }