molstar 3.8.2 → 3.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -202
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +109 -106
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/app.d.ts +5 -2
- package/lib/apps/viewer/app.js +11 -7
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +109 -106
- package/lib/cli/cif2bcif/converter.js +1 -1
- package/lib/commonjs/apps/viewer/app.d.ts +5 -2
- package/lib/commonjs/apps/viewer/app.js +12 -7
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.d.ts +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +4 -1
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +3 -3
- package/lib/commonjs/extensions/alpha-orbitals/density.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/density.js +6 -2
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +6 -3
- package/lib/commonjs/extensions/anvil/algorithm.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
- package/lib/commonjs/extensions/cellpack/state.js +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +1 -1
- package/lib/commonjs/extensions/g3d/model.js +1 -1
- package/lib/commonjs/extensions/geo-export/ui.js +1 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +1 -1
- package/lib/commonjs/extensions/mp4-export/ui.js +1 -0
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +4 -4
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +7 -7
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +14 -14
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +5 -5
- package/lib/commonjs/mol-canvas3d/passes/draw.js +34 -5
- package/lib/commonjs/mol-canvas3d/passes/fxaa.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/marking.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +9 -0
- package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +18 -5
- package/lib/commonjs/mol-canvas3d/passes/pick.js +125 -24
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +4 -0
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +4 -0
- package/lib/commonjs/mol-data/db/column.js +5 -5
- package/lib/commonjs/mol-data/db/table.js +2 -2
- package/lib/commonjs/mol-data/util/array.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +13 -0
- package/lib/commonjs/mol-gl/compute/grid3d.d.ts +2 -2
- package/lib/commonjs/mol-gl/compute/grid3d.js +30 -8
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +6 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +6 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +6 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -10
- package/lib/commonjs/mol-gl/renderer.js +77 -32
- package/lib/commonjs/mol-gl/scene.js +2 -0
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/lines.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/points.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/text.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +41 -9
- package/lib/commonjs/mol-gl/webgl/compat.d.ts +34 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +50 -2
- package/lib/commonjs/mol-gl/webgl/context.d.ts +2 -0
- package/lib/commonjs/mol-gl/webgl/context.js +3 -0
- package/lib/commonjs/mol-gl/webgl/extensions.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/extensions.js +6 -1
- package/lib/commonjs/mol-gl/webgl/timer.d.ts +22 -0
- package/lib/commonjs/mol-gl/webgl/timer.js +169 -0
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +18 -18
- package/lib/commonjs/mol-io/common/binary-cif/decoder.js +16 -16
- package/lib/commonjs/mol-io/common/binary-cif/encoding.js +9 -9
- package/lib/commonjs/mol-io/reader/cif/binary/field.js +3 -3
- package/lib/commonjs/mol-io/reader/cif/data-model.js +14 -14
- package/lib/commonjs/mol-io/reader/cif/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +23 -23
- package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +1 -1
- package/lib/commonjs/mol-io/reader/common/text/column/token.js +1 -1
- package/lib/commonjs/mol-io/reader/common/text/number-parser.js +6 -6
- package/lib/commonjs/mol-io/reader/csv/parser.js +8 -8
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -10
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +7 -7
- package/lib/commonjs/mol-io/writer/cif/encoder.js +8 -8
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +4 -4
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +13 -2
- package/lib/commonjs/mol-model/sequence/alignment/sequence.js +3 -3
- package/lib/commonjs/mol-model/sequence/sequence.js +9 -9
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +3 -3
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
- package/lib/commonjs/mol-model/structure/export/categories/utils.js +1 -1
- package/lib/commonjs/mol-model/structure/model/model.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +6 -6
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.js +116 -116
- package/lib/commonjs/mol-model/structure/query/context.js +1 -1
- package/lib/commonjs/mol-model/structure/query/queries/generators.js +5 -5
- package/lib/commonjs/mol-model/structure/query/queries/internal.js +4 -4
- package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +4 -4
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +9 -9
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +3 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +192 -108
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/element/stats.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/structure.js +11 -11
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +4 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +2 -2
- package/lib/commonjs/mol-model/structure/structure/unit/resonance.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +6 -6
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +6 -6
- package/lib/commonjs/mol-model/structure/structure/unit.js +16 -16
- package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.js +1 -1
- package/lib/commonjs/mol-model/structure/util.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -2
- package/lib/commonjs/mol-model-formats/structure/basic/parser.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/basic/properties.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/sort.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/util.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/cif-core.js +6 -6
- package/lib/commonjs/mol-model-formats/structure/common/entity.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/cube.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/gro.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/mol.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/mol2.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/prmtop.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +3 -3
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +6 -6
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +8 -8
- package/lib/commonjs/mol-model-formats/structure/psf.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/top.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/xyz.js +1 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +2 -2
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +3 -3
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +2 -2
- package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +31 -31
- package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +22 -22
- package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +32 -32
- package/lib/commonjs/mol-model-props/computed/interactions/charged.js +39 -39
- package/lib/commonjs/mol-model-props/computed/interactions/common.js +34 -34
- package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/halogen-bonds.js +12 -12
- package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +32 -32
- package/lib/commonjs/mol-model-props/computed/interactions/hydrophobic.js +9 -9
- package/lib/commonjs/mol-model-props/computed/interactions/metal.js +26 -26
- package/lib/commonjs/mol-model-props/computed/interactions/refine.js +20 -20
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +1 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +12 -12
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +6 -6
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +3 -3
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +11 -11
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +3 -3
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +30 -30
- package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +1 -1
- package/lib/commonjs/mol-model-props/computed/themes/interaction-type.js +10 -10
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +1 -1
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +3 -3
- package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +1 -1
- package/lib/commonjs/mol-model-props/sequence/themes/sifts-mapping.js +1 -1
- package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -1
- package/lib/commonjs/mol-plugin/animation-loop.js +18 -5
- package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +12 -12
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +7 -7
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/config.d.ts +3 -0
- package/lib/commonjs/mol-plugin/config.js +3 -1
- package/lib/commonjs/mol-plugin/context.d.ts +2 -2
- package/lib/commonjs/mol-plugin/context.js +3 -0
- package/lib/commonjs/mol-plugin/state.d.ts +1 -14
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +12 -11
- package/lib/commonjs/mol-plugin-state/formats/volume.js +20 -13
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +5 -5
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/controls.js +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +1 -1
- package/lib/commonjs/mol-plugin-ui/state/snapshots.js +1 -0
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +1 -1
- package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +1 -0
- package/lib/commonjs/mol-plugin-ui/viewport.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/representation.js +2 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.js +2 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/units-visual.js +2 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +12 -15
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +12 -15
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +16 -16
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +4 -4
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/common.js +3 -3
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +30 -30
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +6 -6
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +3 -3
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +20 -20
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +6 -6
- package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/volume/representation.js +2 -1
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +2 -2
- package/lib/commonjs/mol-script/runtime/query/table.js +13 -13
- package/lib/commonjs/mol-state/object.d.ts +3 -3
- package/lib/commonjs/mol-task/util/user-timing.js +1 -1
- package/lib/commonjs/mol-theme/clipping.js +19 -19
- package/lib/commonjs/mol-theme/color/atom-id.js +1 -1
- package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +1 -1
- package/lib/commonjs/mol-theme/color/chain-id.js +4 -4
- package/lib/commonjs/mol-theme/color/element-index.js +1 -1
- package/lib/commonjs/mol-theme/color/element-symbol.js +1 -1
- package/lib/commonjs/mol-theme/color/entity-id.js +4 -4
- package/lib/commonjs/mol-theme/color/entity-source.js +5 -4
- package/lib/commonjs/mol-theme/color/hydrophobicity.js +1 -1
- package/lib/commonjs/mol-theme/color/illustrative.js +1 -1
- package/lib/commonjs/mol-theme/color/model-index.js +1 -1
- package/lib/commonjs/mol-theme/color/molecule-type.js +8 -8
- package/lib/commonjs/mol-theme/color/occupancy.js +1 -1
- package/lib/commonjs/mol-theme/color/operator-hkl.js +1 -1
- package/lib/commonjs/mol-theme/color/operator-name.js +1 -1
- package/lib/commonjs/mol-theme/color/partial-charge.js +1 -1
- package/lib/commonjs/mol-theme/color/polymer-id.js +4 -4
- package/lib/commonjs/mol-theme/color/polymer-index.js +1 -1
- package/lib/commonjs/mol-theme/color/residue-name.js +1 -1
- package/lib/commonjs/mol-theme/color/secondary-structure.js +12 -12
- package/lib/commonjs/mol-theme/color/sequence-id.js +7 -7
- package/lib/commonjs/mol-theme/color/shape-group.js +1 -1
- package/lib/commonjs/mol-theme/color/uncertainty.js +1 -1
- package/lib/commonjs/mol-theme/color/uniform.js +1 -1
- package/lib/commonjs/mol-theme/color/unit-index.js +1 -1
- package/lib/commonjs/mol-theme/color/volume-value.js +1 -1
- package/lib/commonjs/mol-theme/label.js +3 -3
- package/lib/commonjs/mol-util/binding.js +4 -4
- package/lib/commonjs/mol-util/debug.d.ts +6 -1
- package/lib/commonjs/mol-util/debug.js +11 -1
- package/lib/commonjs/mol-util/input/input-observer.js +20 -20
- package/lib/commonjs/mol-util/string-builder.js +1 -1
- package/lib/commonjs/servers/model/preprocess/converter.js +1 -1
- package/lib/commonjs/servers/model/server/query.js +1 -1
- package/lib/commonjs/servers/model/utils/fetch-retry.js +3 -2
- package/lib/commonjs/servers/volume/server/algebra/coordinate.js +6 -6
- package/lib/commonjs/servers/volume/server/query/encode.js +1 -1
- package/lib/examples/alpha-orbitals/index.d.ts +1 -1
- package/lib/examples/alpha-orbitals/index.html +72 -61
- package/lib/examples/alpha-orbitals/index.js +4 -1
- package/lib/examples/basic-wrapper/custom-theme.js +1 -1
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/coloring.js +3 -3
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/alpha-orbitals/density.d.ts +1 -1
- package/lib/extensions/alpha-orbitals/density.js +6 -2
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height: $row-height;
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background: $default-background;
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margin-top: 1px;
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display: table;
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width: 100%;
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> span {
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width: $control-label-width + $control-spacing;
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text-align: right;
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padding: $info-vertical-padding $control-spacing;
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color: color-lower-contrast($font-color, 15%);
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display: table-cell;
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@include non-selectable;
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> div {
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position: relative;
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padding: $info-vertical-padding $control-spacing;
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display: table-cell;
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}
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}
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@@ -1,68 +1,68 @@
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.msp-canvas {
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background-color: #f3f2ee;
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text {
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-khtml-user-select: none; /* Konqueror HTML */
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-moz-user-select: none; /* Firefox */
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-ms-user-select: none; /* Internet Explorer/Edge */
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user-select: none; /* Non-prefixed version, currently
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supported by Chrome and Opera */
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circle {
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stroke-opacity: .3;
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fill: #ae5d04;
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.hide {
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}
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.delete-button {
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rect {
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fill: #ED4337;
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stroke: black;
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}
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text {
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fill: white;
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}
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&:hover {
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stroke: black;
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stroke-width: 3;
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fill: #ff6961;
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}
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}
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.infoCircle {
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&:hover {
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fill: #4c66b2;
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}
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}
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.msp-canvas:focus {
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outline: none;
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.msp-canvas {
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width: 100%;
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height: 100%;
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background-color: #f3f2ee;
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+
text {
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-webkit-touch-callout: none; /* iOS Safari */
|
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+
-webkit-user-select: none; /* Safari */
|
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9
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+
-khtml-user-select: none; /* Konqueror HTML */
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+
-moz-user-select: none; /* Firefox */
|
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11
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+
-ms-user-select: none; /* Internet Explorer/Edge */
|
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12
|
+
user-select: none; /* Non-prefixed version, currently
|
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13
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+
supported by Chrome and Opera */
|
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14
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+
}
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+
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+
circle {
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stroke: black;
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stroke-width: 10;
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stroke-opacity: .3;
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&:hover {
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fill: #ae5d04;
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stroke: black;
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stroke-width: 10px;
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}
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+
}
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.info {
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fill: white;
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stroke: black;
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stroke-width: 3;
|
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+
}
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.show {
|
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visibility: visible;
|
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}
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.hide {
|
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visibility: hidden;
|
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}
|
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|
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+
.delete-button {
|
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rect {
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fill: #ED4337;
|
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+
stroke: black;
|
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+
}
|
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+
|
|
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|
+
text {
|
|
48
|
+
stroke: white;
|
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+
fill: white;
|
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+
}
|
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+
|
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&:hover {
|
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stroke: black;
|
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+
stroke-width: 3;
|
|
55
|
+
fill: #ff6961;
|
|
56
|
+
}
|
|
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|
+
}
|
|
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+
|
|
59
|
+
.infoCircle {
|
|
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|
+
&:hover {
|
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fill: #4c66b2;
|
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|
+
}
|
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+
}
|
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+
}
|
|
65
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+
|
|
66
|
+
.msp-canvas:focus {
|
|
67
|
+
outline: none;
|
|
68
68
|
}
|
|
@@ -1,100 +1,100 @@
|
|
|
1
|
-
|
|
2
|
-
.msp-log-wrap {
|
|
3
|
-
position: absolute;
|
|
4
|
-
right: 0;
|
|
5
|
-
top: 0;
|
|
6
|
-
left: 0;
|
|
7
|
-
bottom: 0;
|
|
8
|
-
overflow: hidden;
|
|
9
|
-
}
|
|
10
|
-
|
|
11
|
-
.msp-log {
|
|
12
|
-
position: absolute;
|
|
13
|
-
right: -20px;
|
|
14
|
-
top: 0;
|
|
15
|
-
left: 0;
|
|
16
|
-
bottom: 0;
|
|
17
|
-
overflow-y: scroll;
|
|
18
|
-
overflow-x: hidden;
|
|
19
|
-
font-size: 90%;
|
|
20
|
-
background: $control-background;
|
|
21
|
-
}
|
|
22
|
-
|
|
23
|
-
.msp-log {
|
|
24
|
-
font-size: 90%;
|
|
25
|
-
|
|
26
|
-
ul {
|
|
27
|
-
padding: 0;
|
|
28
|
-
margin: 0;
|
|
29
|
-
}
|
|
30
|
-
|
|
31
|
-
color: $log-font-color;
|
|
32
|
-
|
|
33
|
-
li {
|
|
34
|
-
clear: both;
|
|
35
|
-
margin: 0;
|
|
36
|
-
background: $default-background;
|
|
37
|
-
position: relative;
|
|
38
|
-
|
|
39
|
-
&:not(:last-child) {
|
|
40
|
-
border-bottom: 1px solid $border-color;
|
|
41
|
-
}
|
|
42
|
-
}
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
.msp-log-entry {
|
|
46
|
-
margin-left: $control-label-width;
|
|
47
|
-
background: color-lower-contrast($control-background, 5%);
|
|
48
|
-
padding: $info-vertical-padding ($control-spacing + 15px) $info-vertical-padding $control-spacing ;
|
|
49
|
-
}
|
|
50
|
-
|
|
51
|
-
.msp-log-timestamp {
|
|
52
|
-
padding: $info-vertical-padding $control-spacing $info-vertical-padding $control-spacing;
|
|
53
|
-
float: left;
|
|
54
|
-
text-align: right;
|
|
55
|
-
width: $control-label-width;
|
|
56
|
-
color: $log-timestamp-font-color;
|
|
57
|
-
//vertical-align: baseline;
|
|
58
|
-
//line-height: $row-height;
|
|
59
|
-
font-size: 100%;
|
|
60
|
-
}
|
|
61
|
-
|
|
62
|
-
.msp-log-timestamp small {
|
|
63
|
-
font-size: 100%;
|
|
64
|
-
}
|
|
65
|
-
}
|
|
66
|
-
|
|
67
|
-
// .msp-log hr {
|
|
68
|
-
// border-color: $separator-color;
|
|
69
|
-
// margin: 3px 3px 0 5px;
|
|
70
|
-
// }
|
|
71
|
-
|
|
72
|
-
.msp-log .label {
|
|
73
|
-
margin-top: -3px;
|
|
74
|
-
font-size: 7pt;
|
|
75
|
-
}
|
|
76
|
-
|
|
77
|
-
.msp-log-entry-badge {
|
|
78
|
-
position: absolute;
|
|
79
|
-
left: 0;
|
|
80
|
-
top: 0;
|
|
81
|
-
bottom: 0;
|
|
82
|
-
width: 6px;
|
|
83
|
-
}
|
|
84
|
-
|
|
85
|
-
.msp-log-entry-message {
|
|
86
|
-
background: $log-message;
|
|
87
|
-
}
|
|
88
|
-
|
|
89
|
-
.msp-log-entry-info {
|
|
90
|
-
background: $log-info;
|
|
91
|
-
}
|
|
92
|
-
|
|
93
|
-
.msp-log-entry-error {
|
|
94
|
-
background: $log-error;
|
|
95
|
-
}
|
|
96
|
-
|
|
97
|
-
.msp-log-entry-warning {
|
|
98
|
-
background: $log-warning;
|
|
99
|
-
}
|
|
100
|
-
|
|
1
|
+
|
|
2
|
+
.msp-log-wrap {
|
|
3
|
+
position: absolute;
|
|
4
|
+
right: 0;
|
|
5
|
+
top: 0;
|
|
6
|
+
left: 0;
|
|
7
|
+
bottom: 0;
|
|
8
|
+
overflow: hidden;
|
|
9
|
+
}
|
|
10
|
+
|
|
11
|
+
.msp-log {
|
|
12
|
+
position: absolute;
|
|
13
|
+
right: -20px;
|
|
14
|
+
top: 0;
|
|
15
|
+
left: 0;
|
|
16
|
+
bottom: 0;
|
|
17
|
+
overflow-y: scroll;
|
|
18
|
+
overflow-x: hidden;
|
|
19
|
+
font-size: 90%;
|
|
20
|
+
background: $control-background;
|
|
21
|
+
}
|
|
22
|
+
|
|
23
|
+
.msp-log {
|
|
24
|
+
font-size: 90%;
|
|
25
|
+
|
|
26
|
+
ul {
|
|
27
|
+
padding: 0;
|
|
28
|
+
margin: 0;
|
|
29
|
+
}
|
|
30
|
+
|
|
31
|
+
color: $log-font-color;
|
|
32
|
+
|
|
33
|
+
li {
|
|
34
|
+
clear: both;
|
|
35
|
+
margin: 0;
|
|
36
|
+
background: $default-background;
|
|
37
|
+
position: relative;
|
|
38
|
+
|
|
39
|
+
&:not(:last-child) {
|
|
40
|
+
border-bottom: 1px solid $border-color;
|
|
41
|
+
}
|
|
42
|
+
}
|
|
43
|
+
|
|
44
|
+
|
|
45
|
+
.msp-log-entry {
|
|
46
|
+
margin-left: $control-label-width;
|
|
47
|
+
background: color-lower-contrast($control-background, 5%);
|
|
48
|
+
padding: $info-vertical-padding ($control-spacing + 15px) $info-vertical-padding $control-spacing ;
|
|
49
|
+
}
|
|
50
|
+
|
|
51
|
+
.msp-log-timestamp {
|
|
52
|
+
padding: $info-vertical-padding $control-spacing $info-vertical-padding $control-spacing;
|
|
53
|
+
float: left;
|
|
54
|
+
text-align: right;
|
|
55
|
+
width: $control-label-width;
|
|
56
|
+
color: $log-timestamp-font-color;
|
|
57
|
+
//vertical-align: baseline;
|
|
58
|
+
//line-height: $row-height;
|
|
59
|
+
font-size: 100%;
|
|
60
|
+
}
|
|
61
|
+
|
|
62
|
+
.msp-log-timestamp small {
|
|
63
|
+
font-size: 100%;
|
|
64
|
+
}
|
|
65
|
+
}
|
|
66
|
+
|
|
67
|
+
// .msp-log hr {
|
|
68
|
+
// border-color: $separator-color;
|
|
69
|
+
// margin: 3px 3px 0 5px;
|
|
70
|
+
// }
|
|
71
|
+
|
|
72
|
+
.msp-log .label {
|
|
73
|
+
margin-top: -3px;
|
|
74
|
+
font-size: 7pt;
|
|
75
|
+
}
|
|
76
|
+
|
|
77
|
+
.msp-log-entry-badge {
|
|
78
|
+
position: absolute;
|
|
79
|
+
left: 0;
|
|
80
|
+
top: 0;
|
|
81
|
+
bottom: 0;
|
|
82
|
+
width: 6px;
|
|
83
|
+
}
|
|
84
|
+
|
|
85
|
+
.msp-log-entry-message {
|
|
86
|
+
background: $log-message;
|
|
87
|
+
}
|
|
88
|
+
|
|
89
|
+
.msp-log-entry-info {
|
|
90
|
+
background: $log-info;
|
|
91
|
+
}
|
|
92
|
+
|
|
93
|
+
.msp-log-entry-error {
|
|
94
|
+
background: $log-error;
|
|
95
|
+
}
|
|
96
|
+
|
|
97
|
+
.msp-log-entry-warning {
|
|
98
|
+
background: $log-warning;
|
|
99
|
+
}
|
|
100
|
+
|