molstar 3.8.2 → 3.10.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (596) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +109 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/viewer/app.d.ts +5 -2
  8. package/lib/apps/viewer/app.js +11 -7
  9. package/lib/apps/viewer/embedded.html +43 -43
  10. package/lib/apps/viewer/index.html +109 -106
  11. package/lib/cli/cif2bcif/converter.js +1 -1
  12. package/lib/commonjs/apps/viewer/app.d.ts +5 -2
  13. package/lib/commonjs/apps/viewer/app.js +12 -7
  14. package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
  15. package/lib/commonjs/examples/alpha-orbitals/index.d.ts +1 -1
  16. package/lib/commonjs/examples/alpha-orbitals/index.js +4 -1
  17. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +1 -1
  18. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +3 -3
  19. package/lib/commonjs/extensions/alpha-orbitals/density.d.ts +1 -1
  20. package/lib/commonjs/extensions/alpha-orbitals/density.js +6 -2
  21. package/lib/commonjs/extensions/alpha-orbitals/orbitals.d.ts +1 -1
  22. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +6 -3
  23. package/lib/commonjs/extensions/anvil/algorithm.js +1 -1
  24. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  25. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  26. package/lib/commonjs/extensions/cellpack/state.js +1 -1
  27. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +1 -1
  28. package/lib/commonjs/extensions/g3d/model.js +1 -1
  29. package/lib/commonjs/extensions/geo-export/ui.js +1 -0
  30. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +1 -1
  31. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +1 -1
  32. package/lib/commonjs/extensions/mp4-export/ui.js +1 -0
  33. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +1 -1
  34. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +4 -4
  35. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +1 -1
  36. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +2 -2
  37. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +1 -1
  38. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  39. package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
  40. package/lib/commonjs/mol-canvas3d/controls/trackball.js +7 -7
  41. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +14 -14
  42. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +5 -5
  43. package/lib/commonjs/mol-canvas3d/passes/draw.js +34 -5
  44. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +5 -0
  45. package/lib/commonjs/mol-canvas3d/passes/marking.js +5 -0
  46. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +9 -0
  47. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +18 -5
  48. package/lib/commonjs/mol-canvas3d/passes/pick.js +125 -24
  49. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +5 -0
  50. package/lib/commonjs/mol-canvas3d/passes/smaa.js +4 -0
  51. package/lib/commonjs/mol-canvas3d/passes/wboit.js +4 -0
  52. package/lib/commonjs/mol-data/db/column.js +5 -5
  53. package/lib/commonjs/mol-data/db/table.js +2 -2
  54. package/lib/commonjs/mol-data/util/array.d.ts +1 -1
  55. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  56. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  57. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  58. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +13 -0
  59. package/lib/commonjs/mol-gl/compute/grid3d.d.ts +2 -2
  60. package/lib/commonjs/mol-gl/compute/grid3d.js +30 -8
  61. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.d.ts +1 -1
  62. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +6 -1
  63. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.d.ts +1 -1
  64. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +6 -1
  65. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.d.ts +1 -1
  66. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +6 -1
  67. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +1 -1
  68. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -10
  69. package/lib/commonjs/mol-gl/renderer.js +77 -32
  70. package/lib/commonjs/mol-gl/scene.js +2 -0
  71. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  72. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  73. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  74. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  75. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  76. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  77. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  78. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  79. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  80. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  81. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  82. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  83. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  84. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  85. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +1 -1
  86. package/lib/commonjs/mol-gl/shader/lines.frag.js +1 -1
  87. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  88. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  89. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +1 -1
  90. package/lib/commonjs/mol-gl/shader/points.frag.js +1 -1
  91. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  92. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  93. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +1 -1
  94. package/lib/commonjs/mol-gl/shader/text.frag.js +1 -1
  95. package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
  96. package/lib/commonjs/mol-gl/shader-code.js +41 -9
  97. package/lib/commonjs/mol-gl/webgl/compat.d.ts +34 -1
  98. package/lib/commonjs/mol-gl/webgl/compat.js +50 -2
  99. package/lib/commonjs/mol-gl/webgl/context.d.ts +2 -0
  100. package/lib/commonjs/mol-gl/webgl/context.js +3 -0
  101. package/lib/commonjs/mol-gl/webgl/extensions.d.ts +3 -2
  102. package/lib/commonjs/mol-gl/webgl/extensions.js +6 -1
  103. package/lib/commonjs/mol-gl/webgl/timer.d.ts +22 -0
  104. package/lib/commonjs/mol-gl/webgl/timer.js +169 -0
  105. package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +18 -18
  106. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +16 -16
  107. package/lib/commonjs/mol-io/common/binary-cif/encoding.js +9 -9
  108. package/lib/commonjs/mol-io/reader/cif/binary/field.js +3 -3
  109. package/lib/commonjs/mol-io/reader/cif/data-model.js +14 -14
  110. package/lib/commonjs/mol-io/reader/cif/schema.js +1 -1
  111. package/lib/commonjs/mol-io/reader/cif/text/parser.js +23 -23
  112. package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +1 -1
  113. package/lib/commonjs/mol-io/reader/common/text/column/token.js +1 -1
  114. package/lib/commonjs/mol-io/reader/common/text/number-parser.js +6 -6
  115. package/lib/commonjs/mol-io/reader/csv/parser.js +8 -8
  116. package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -10
  117. package/lib/commonjs/mol-io/writer/cif/encoder/text.js +7 -7
  118. package/lib/commonjs/mol-io/writer/cif/encoder.js +8 -8
  119. package/lib/commonjs/mol-io/writer/mol2/encoder.js +4 -4
  120. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +13 -2
  121. package/lib/commonjs/mol-model/sequence/alignment/sequence.js +3 -3
  122. package/lib/commonjs/mol-model/sequence/sequence.js +9 -9
  123. package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +3 -3
  124. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  125. package/lib/commonjs/mol-model/structure/export/categories/utils.js +1 -1
  126. package/lib/commonjs/mol-model/structure/model/model.js +2 -2
  127. package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +6 -6
  128. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +1 -1
  129. package/lib/commonjs/mol-model/structure/model/types.js +116 -116
  130. package/lib/commonjs/mol-model/structure/query/context.js +1 -1
  131. package/lib/commonjs/mol-model/structure/query/queries/generators.js +5 -5
  132. package/lib/commonjs/mol-model/structure/query/queries/internal.js +4 -4
  133. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +4 -4
  134. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  135. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +9 -9
  136. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +3 -1
  137. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +192 -108
  138. package/lib/commonjs/mol-model/structure/structure/element/loci.js +5 -5
  139. package/lib/commonjs/mol-model/structure/structure/element/stats.js +5 -5
  140. package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
  141. package/lib/commonjs/mol-model/structure/structure/structure.js +11 -11
  142. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -5
  143. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +4 -4
  144. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +2 -2
  145. package/lib/commonjs/mol-model/structure/structure/unit/resonance.js +1 -1
  146. package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +6 -6
  147. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +6 -6
  148. package/lib/commonjs/mol-model/structure/structure/unit.js +16 -16
  149. package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.js +1 -1
  150. package/lib/commonjs/mol-model/structure/util.js +4 -4
  151. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -2
  152. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +4 -4
  153. package/lib/commonjs/mol-model-formats/structure/basic/properties.js +1 -1
  154. package/lib/commonjs/mol-model-formats/structure/basic/sort.js +1 -1
  155. package/lib/commonjs/mol-model-formats/structure/basic/util.js +1 -1
  156. package/lib/commonjs/mol-model-formats/structure/cif-core.js +6 -6
  157. package/lib/commonjs/mol-model-formats/structure/common/entity.js +1 -1
  158. package/lib/commonjs/mol-model-formats/structure/cube.js +1 -1
  159. package/lib/commonjs/mol-model-formats/structure/gro.js +1 -1
  160. package/lib/commonjs/mol-model-formats/structure/mol.js +1 -1
  161. package/lib/commonjs/mol-model-formats/structure/mol2.js +4 -4
  162. package/lib/commonjs/mol-model-formats/structure/prmtop.js +1 -1
  163. package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +3 -3
  164. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
  165. package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +6 -6
  166. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +8 -8
  167. package/lib/commonjs/mol-model-formats/structure/psf.js +1 -1
  168. package/lib/commonjs/mol-model-formats/structure/top.js +1 -1
  169. package/lib/commonjs/mol-model-formats/structure/xyz.js +1 -1
  170. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +2 -2
  171. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +3 -3
  172. package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +2 -2
  173. package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +31 -31
  174. package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +22 -22
  175. package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +32 -32
  176. package/lib/commonjs/mol-model-props/computed/interactions/charged.js +39 -39
  177. package/lib/commonjs/mol-model-props/computed/interactions/common.js +34 -34
  178. package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +1 -1
  179. package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +1 -1
  180. package/lib/commonjs/mol-model-props/computed/interactions/halogen-bonds.js +12 -12
  181. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +32 -32
  182. package/lib/commonjs/mol-model-props/computed/interactions/hydrophobic.js +9 -9
  183. package/lib/commonjs/mol-model-props/computed/interactions/metal.js +26 -26
  184. package/lib/commonjs/mol-model-props/computed/interactions/refine.js +20 -20
  185. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +2 -2
  186. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +2 -2
  187. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +1 -1
  188. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +12 -12
  189. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +6 -6
  190. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +3 -3
  191. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +11 -11
  192. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +3 -3
  193. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +30 -30
  194. package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +1 -1
  195. package/lib/commonjs/mol-model-props/computed/themes/interaction-type.js +10 -10
  196. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +1 -1
  197. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +3 -3
  198. package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +1 -1
  199. package/lib/commonjs/mol-model-props/sequence/themes/sifts-mapping.js +1 -1
  200. package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -1
  201. package/lib/commonjs/mol-plugin/animation-loop.js +18 -5
  202. package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +12 -12
  203. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +7 -7
  204. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  205. package/lib/commonjs/mol-plugin/config.d.ts +3 -0
  206. package/lib/commonjs/mol-plugin/config.js +3 -1
  207. package/lib/commonjs/mol-plugin/context.d.ts +2 -2
  208. package/lib/commonjs/mol-plugin/context.js +3 -0
  209. package/lib/commonjs/mol-plugin/state.d.ts +1 -14
  210. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +12 -11
  211. package/lib/commonjs/mol-plugin-state/formats/volume.js +20 -13
  212. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +5 -5
  213. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  214. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -1
  215. package/lib/commonjs/mol-plugin-ui/controls.js +1 -1
  216. package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +1 -1
  217. package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +1 -1
  218. package/lib/commonjs/mol-plugin-ui/state/snapshots.js +1 -0
  219. package/lib/commonjs/mol-plugin-ui/structure/focus.js +1 -1
  220. package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +1 -0
  221. package/lib/commonjs/mol-plugin-ui/viewport.d.ts +2 -2
  222. package/lib/commonjs/mol-repr/shape/representation.d.ts +1 -1
  223. package/lib/commonjs/mol-repr/shape/representation.js +2 -1
  224. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  225. package/lib/commonjs/mol-repr/structure/complex-visual.js +2 -1
  226. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  227. package/lib/commonjs/mol-repr/structure/units-visual.js +2 -1
  228. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +10 -10
  229. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +10 -10
  230. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +12 -15
  231. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +12 -15
  232. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +16 -16
  233. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
  234. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -0
  235. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +4 -4
  236. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
  237. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +2 -2
  238. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -2
  239. package/lib/commonjs/mol-repr/structure/visual/util/common.js +3 -3
  240. package/lib/commonjs/mol-repr/structure/visual/util/link.js +30 -30
  241. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +6 -6
  242. package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +3 -3
  243. package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +20 -20
  244. package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +6 -6
  245. package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
  246. package/lib/commonjs/mol-repr/volume/representation.js +2 -1
  247. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  248. package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +2 -2
  249. package/lib/commonjs/mol-script/runtime/query/table.js +13 -13
  250. package/lib/commonjs/mol-state/object.d.ts +3 -3
  251. package/lib/commonjs/mol-task/util/user-timing.js +1 -1
  252. package/lib/commonjs/mol-theme/clipping.js +19 -19
  253. package/lib/commonjs/mol-theme/color/atom-id.js +1 -1
  254. package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +1 -1
  255. package/lib/commonjs/mol-theme/color/chain-id.js +4 -4
  256. package/lib/commonjs/mol-theme/color/element-index.js +1 -1
  257. package/lib/commonjs/mol-theme/color/element-symbol.js +1 -1
  258. package/lib/commonjs/mol-theme/color/entity-id.js +4 -4
  259. package/lib/commonjs/mol-theme/color/entity-source.js +5 -4
  260. package/lib/commonjs/mol-theme/color/hydrophobicity.js +1 -1
  261. package/lib/commonjs/mol-theme/color/illustrative.js +1 -1
  262. package/lib/commonjs/mol-theme/color/model-index.js +1 -1
  263. package/lib/commonjs/mol-theme/color/molecule-type.js +8 -8
  264. package/lib/commonjs/mol-theme/color/occupancy.js +1 -1
  265. package/lib/commonjs/mol-theme/color/operator-hkl.js +1 -1
  266. package/lib/commonjs/mol-theme/color/operator-name.js +1 -1
  267. package/lib/commonjs/mol-theme/color/partial-charge.js +1 -1
  268. package/lib/commonjs/mol-theme/color/polymer-id.js +4 -4
  269. package/lib/commonjs/mol-theme/color/polymer-index.js +1 -1
  270. package/lib/commonjs/mol-theme/color/residue-name.js +1 -1
  271. package/lib/commonjs/mol-theme/color/secondary-structure.js +12 -12
  272. package/lib/commonjs/mol-theme/color/sequence-id.js +7 -7
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  574. package/lib/mol-theme/color/partial-charge.js +1 -1
  575. package/lib/mol-theme/color/polymer-id.js +4 -4
  576. package/lib/mol-theme/color/polymer-index.js +1 -1
  577. package/lib/mol-theme/color/residue-name.js +1 -1
  578. package/lib/mol-theme/color/secondary-structure.js +12 -12
  579. package/lib/mol-theme/color/sequence-id.js +7 -7
  580. package/lib/mol-theme/color/shape-group.js +1 -1
  581. package/lib/mol-theme/color/uncertainty.js +1 -1
  582. package/lib/mol-theme/color/uniform.js +1 -1
  583. package/lib/mol-theme/color/unit-index.js +1 -1
  584. package/lib/mol-theme/color/volume-value.js +1 -1
  585. package/lib/mol-theme/label.js +3 -3
  586. package/lib/mol-util/binding.js +4 -4
  587. package/lib/mol-util/debug.d.ts +6 -1
  588. package/lib/mol-util/debug.js +9 -1
  589. package/lib/mol-util/input/input-observer.js +20 -20
  590. package/lib/mol-util/string-builder.js +1 -1
  591. package/lib/servers/model/preprocess/converter.js +1 -1
  592. package/lib/servers/model/server/query.js +1 -1
  593. package/lib/servers/model/utils/fetch-retry.js +3 -2
  594. package/lib/servers/volume/server/algebra/coordinate.js +6 -6
  595. package/lib/servers/volume/server/query/encode.js +1 -1
  596. package/package.json +162 -162
@@ -61,7 +61,7 @@ export function QmeanScoreColorTheme(ctx, props) {
61
61
  export var QmeanScoreColorThemeProvider = {
62
62
  name: 'qmean-score',
63
63
  label: 'QMEAN Score',
64
- category: "Validation" /* Validation */,
64
+ category: "Validation" /* ColorTheme.Category.Validation */,
65
65
  factory: QmeanScoreColorTheme,
66
66
  getParams: getQmeanScoreColorThemeParams,
67
67
  defaultValues: PD.getDefaultValues(getQmeanScoreColorThemeParams({})),
@@ -82,6 +82,7 @@ var Mp4EncoderUI = /** @class */ (function (_super) {
82
82
  };
83
83
  Mp4EncoderUI.prototype.componentWillUnmount = function () {
84
84
  var _a;
85
+ _super.prototype.componentWillUnmount.call(this);
85
86
  (_a = this._controls) === null || _a === void 0 ? void 0 : _a.dispose();
86
87
  this._controls = void 0;
87
88
  };
@@ -79,7 +79,7 @@ export function StructureQualityReportColorTheme(ctx, props) {
79
79
  export var StructureQualityReportColorThemeProvider = {
80
80
  name: 'pdbe-structure-quality-report',
81
81
  label: 'Structure Quality Report',
82
- category: "Validation" /* Validation */,
82
+ category: "Validation" /* ColorTheme.Category.Validation */,
83
83
  factory: StructureQualityReportColorTheme,
84
84
  getParams: function (ctx) {
85
85
  var issueTypes = StructureQualityReport.getIssueTypes(ctx.structure);
@@ -12,10 +12,10 @@ import { getPalette, getPaletteParams } from '../../../mol-util/color/palette';
12
12
  var DefaultColor = Color(0xCCCCCC);
13
13
  function getAsymId(unit) {
14
14
  switch (unit.kind) {
15
- case 0 /* Atomic */:
15
+ case 0 /* Unit.Kind.Atomic */:
16
16
  return StructureProperties.chain.label_asym_id;
17
- case 1 /* Spheres */:
18
- case 2 /* Gaussians */:
17
+ case 1 /* Unit.Kind.Spheres */:
18
+ case 2 /* Unit.Kind.Gaussians */:
19
19
  return StructureProperties.coarse.asym_id;
20
20
  }
21
21
  }
@@ -83,7 +83,7 @@ export function AssemblySymmetryClusterColorTheme(ctx, props) {
83
83
  export var AssemblySymmetryClusterColorThemeProvider = {
84
84
  name: AssemblySymmetry.Tag.Cluster,
85
85
  label: 'Assembly Symmetry Cluster',
86
- category: "Symmetry" /* Symmetry */,
86
+ category: "Symmetry" /* ColorTheme.Category.Symmetry */,
87
87
  factory: AssemblySymmetryClusterColorTheme,
88
88
  getParams: getAssemblySymmetryClusterColorThemeParams,
89
89
  defaultValues: PD.getDefaultValues(AssemblySymmetryClusterColorThemeParams),
@@ -62,7 +62,7 @@ export function DensityFitColorTheme(ctx, props) {
62
62
  export var DensityFitColorThemeProvider = {
63
63
  name: ValidationReport.Tag.DensityFit,
64
64
  label: 'Density Fit',
65
- category: "Validation" /* Validation */,
65
+ category: "Validation" /* ColorTheme.Category.Validation */,
66
66
  factory: DensityFitColorTheme,
67
67
  getParams: function () { return ({}); },
68
68
  defaultValues: PD.getDefaultValues({}),
@@ -51,7 +51,7 @@ export function GeometryQualityColorTheme(ctx, props) {
51
51
  if (value === undefined)
52
52
  return DefaultColor;
53
53
  var count = SetUtils.differenceSize(value, ignore_1);
54
- if (count > 0 && polymerType_1[rI] === 0 /* NA */) {
54
+ if (count > 0 && polymerType_1[rI] === 0 /* PolymerType.NA */) {
55
55
  count = 0;
56
56
  if (!ignore_1.has('clash') && clashes_1.getVertexEdgeCount(element) > 0)
57
57
  count += 1;
@@ -92,7 +92,7 @@ export function GeometryQualityColorTheme(ctx, props) {
92
92
  export var GeometryQualityColorThemeProvider = {
93
93
  name: ValidationReport.Tag.GeometryQuality,
94
94
  label: 'Geometry Quality',
95
- category: "Validation" /* Validation */,
95
+ category: "Validation" /* ColorTheme.Category.Validation */,
96
96
  factory: GeometryQualityColorTheme,
97
97
  getParams: getGeometricQualityColorThemeParams,
98
98
  defaultValues: PD.getDefaultValues(getGeometricQualityColorThemeParams({})),
@@ -50,7 +50,7 @@ export function RandomCoilIndexColorTheme(ctx, props) {
50
50
  export var RandomCoilIndexColorThemeProvider = {
51
51
  name: ValidationReport.Tag.RandomCoilIndex,
52
52
  label: 'Random Coil Index',
53
- category: "Validation" /* Validation */,
53
+ category: "Validation" /* ColorTheme.Category.Validation */,
54
54
  factory: RandomCoilIndexColorTheme,
55
55
  getParams: function () { return ({}); },
56
56
  defaultValues: PD.getDefaultValues({}),
@@ -39,7 +39,7 @@ function createIntraUnitClashCylinderMesh(ctx, unit, structure, theme, props, me
39
39
  pos(elements[a[edgeIndex]], posA);
40
40
  pos(elements[b[edgeIndex]], posB);
41
41
  },
42
- style: function (edgeIndex) { return 6 /* Disk */; },
42
+ style: function (edgeIndex) { return 6 /* LinkStyle.Disk */; },
43
43
  radius: function (edgeIndex) { return magnitude[edgeIndex] * sizeFactor; },
44
44
  };
45
45
  var _a = createLinkCylinderMesh(ctx, builderProps, props, mesh), m = _a.mesh, boundingSphere = _a.boundingSphere;
@@ -139,7 +139,7 @@ function createInterUnitClashCylinderMesh(ctx, structure, theme, props, mesh) {
139
139
  uA.conformation.position(uA.elements[b.indexA], posA);
140
140
  uB.conformation.position(uB.elements[b.indexB], posB);
141
141
  },
142
- style: function (edgeIndex) { return 6 /* Disk */; },
142
+ style: function (edgeIndex) { return 6 /* LinkStyle.Disk */; },
143
143
  radius: function (edgeIndex) { return edges[edgeIndex].props.magnitude * sizeFactor; }
144
144
  };
145
145
  var _a = createLinkCylinderMesh(ctx, builderProps, props, mesh), m = _a.mesh, boundingSphere = _a.boundingSphere;
@@ -26,7 +26,7 @@ import { MultiSampleHelper, MultiSampleParams, MultiSamplePass } from './passes/
26
26
  import { PickHelper } from './passes/pick';
27
27
  import { ImagePass } from './passes/image';
28
28
  import { Sphere3D } from '../mol-math/geometry';
29
- import { isDebugMode } from '../mol-util/debug';
29
+ import { isDebugMode, isTimingMode } from '../mol-util/debug';
30
30
  import { CameraHelperParams } from './helper/camera-helper';
31
31
  import { produce } from 'immer';
32
32
  import { HandleHelperParams } from './helper/handle-helper';
@@ -300,6 +300,8 @@ var Canvas3D;
300
300
  stereoCamera.update();
301
301
  cam = stereoCamera;
302
302
  }
303
+ if (isTimingMode)
304
+ webgl.timer.mark('Canvas3D.render');
303
305
  var ctx = { renderer: renderer, camera: cam, scene: scene, helper: helper };
304
306
  if (MultiSamplePass.isEnabled(p.multiSample)) {
305
307
  var forceOn = !cameraChanged && markingUpdated && !controls.isAnimating;
@@ -308,6 +310,8 @@ var Canvas3D;
308
310
  else {
309
311
  passes.draw.render(ctx, p, true);
310
312
  }
313
+ if (isTimingMode)
314
+ webgl.timer.markEnd('Canvas3D.render');
311
315
  // if only marking has updated, do not set the flag to dirty
312
316
  pickHelper.dirty = pickHelper.dirty || shouldRender;
313
317
  didRender = true;
@@ -18,14 +18,14 @@ var B = ButtonsType;
18
18
  var M = ModifiersKeys;
19
19
  var Trigger = Binding.Trigger;
20
20
  export var DefaultTrackballBindings = {
21
- dragRotate: Binding([Trigger(1 /* Primary */, M.create())], 'Rotate', 'Drag using ${triggers}'),
22
- dragRotateZ: Binding([Trigger(1 /* Primary */, M.create({ shift: true }))], 'Rotate around z-axis', 'Drag using ${triggers}'),
23
- dragPan: Binding([Trigger(2 /* Secondary */, M.create()), Trigger(1 /* Primary */, M.create({ control: true }))], 'Pan', 'Drag using ${triggers}'),
21
+ dragRotate: Binding([Trigger(1 /* B.Flag.Primary */, M.create())], 'Rotate', 'Drag using ${triggers}'),
22
+ dragRotateZ: Binding([Trigger(1 /* B.Flag.Primary */, M.create({ shift: true }))], 'Rotate around z-axis', 'Drag using ${triggers}'),
23
+ dragPan: Binding([Trigger(2 /* B.Flag.Secondary */, M.create()), Trigger(1 /* B.Flag.Primary */, M.create({ control: true }))], 'Pan', 'Drag using ${triggers}'),
24
24
  dragZoom: Binding.Empty,
25
- dragFocus: Binding([Trigger(8 /* Forth */, M.create())], 'Focus', 'Drag using ${triggers}'),
26
- dragFocusZoom: Binding([Trigger(4 /* Auxilary */, M.create())], 'Focus and zoom', 'Drag using ${triggers}'),
27
- scrollZoom: Binding([Trigger(4 /* Auxilary */, M.create())], 'Zoom', 'Scroll using ${triggers}'),
28
- scrollFocus: Binding([Trigger(4 /* Auxilary */, M.create({ shift: true }))], 'Clip', 'Scroll using ${triggers}'),
25
+ dragFocus: Binding([Trigger(8 /* B.Flag.Forth */, M.create())], 'Focus', 'Drag using ${triggers}'),
26
+ dragFocusZoom: Binding([Trigger(4 /* B.Flag.Auxilary */, M.create())], 'Focus and zoom', 'Drag using ${triggers}'),
27
+ scrollZoom: Binding([Trigger(4 /* B.Flag.Auxilary */, M.create())], 'Zoom', 'Scroll using ${triggers}'),
28
+ scrollFocus: Binding([Trigger(4 /* B.Flag.Auxilary */, M.create({ shift: true }))], 'Clip', 'Scroll using ${triggers}'),
29
29
  scrollFocusZoom: Binding.Empty,
30
30
  };
31
31
  export var TrackballControlsParams = {
@@ -86,7 +86,7 @@ var CameraHelper = /** @class */ (function () {
86
86
  });
87
87
  CameraHelper.prototype.getLoci = function (pickingId) {
88
88
  var objectId = pickingId.objectId, groupId = pickingId.groupId, instanceId = pickingId.instanceId;
89
- if (!this.renderObject || objectId !== this.renderObject.id || groupId === 0 /* None */)
89
+ if (!this.renderObject || objectId !== this.renderObject.id || groupId === 0 /* CameraHelperAxis.None */)
90
90
  return EmptyLoci;
91
91
  return CameraAxesLoci(this, groupId, instanceId);
92
92
  };
@@ -114,12 +114,12 @@ var CameraHelper = /** @class */ (function () {
114
114
  export { CameraHelper };
115
115
  function getAxisLabel(axis) {
116
116
  switch (axis) {
117
- case 1 /* X */: return 'X Axis';
118
- case 2 /* Y */: return 'Y Axis';
119
- case 3 /* Z */: return 'Z Axis';
120
- case 4 /* XY */: return 'XY Plane';
121
- case 5 /* XZ */: return 'XZ Plane';
122
- case 6 /* YZ */: return 'YZ Plane';
117
+ case 1 /* CameraHelperAxis.X */: return 'X Axis';
118
+ case 2 /* CameraHelperAxis.Y */: return 'Y Axis';
119
+ case 3 /* CameraHelperAxis.Z */: return 'Z Axis';
120
+ case 4 /* CameraHelperAxis.XY */: return 'XY Plane';
121
+ case 5 /* CameraHelperAxis.XZ */: return 'XZ Plane';
122
+ case 6 /* CameraHelperAxis.YZ */: return 'YZ Plane';
123
123
  default: return 'Axes';
124
124
  }
125
125
  }
@@ -160,33 +160,33 @@ function createAxesMesh(scale, mesh) {
160
160
  var y = Vec3.scale(Vec3(), Vec3.unitY, scale);
161
161
  var z = Vec3.scale(Vec3(), Vec3.unitZ, scale);
162
162
  var cylinderProps = { radiusTop: radius, radiusBottom: radius, radialSegments: 32 };
163
- state.currentGroup = 0 /* None */;
163
+ state.currentGroup = 0 /* CameraHelperAxis.None */;
164
164
  addSphere(state, Vec3.origin, radius, 2);
165
- state.currentGroup = 1 /* X */;
165
+ state.currentGroup = 1 /* CameraHelperAxis.X */;
166
166
  addSphere(state, x, radius, 2);
167
167
  addCylinder(state, Vec3.origin, x, 1, cylinderProps);
168
- state.currentGroup = 2 /* Y */;
168
+ state.currentGroup = 2 /* CameraHelperAxis.Y */;
169
169
  addSphere(state, y, radius, 2);
170
170
  addCylinder(state, Vec3.origin, y, 1, cylinderProps);
171
- state.currentGroup = 3 /* Z */;
171
+ state.currentGroup = 3 /* CameraHelperAxis.Z */;
172
172
  addSphere(state, z, radius, 2);
173
173
  addCylinder(state, Vec3.origin, z, 1, cylinderProps);
174
174
  Vec3.scale(x, x, 0.5);
175
175
  Vec3.scale(y, y, 0.5);
176
176
  Vec3.scale(z, z, 0.5);
177
- state.currentGroup = 4 /* XY */;
177
+ state.currentGroup = 4 /* CameraHelperAxis.XY */;
178
178
  MeshBuilder.addTriangle(state, Vec3.origin, x, y);
179
179
  MeshBuilder.addTriangle(state, Vec3.origin, y, x);
180
180
  var xy = Vec3.add(Vec3(), x, y);
181
181
  MeshBuilder.addTriangle(state, xy, x, y);
182
182
  MeshBuilder.addTriangle(state, xy, y, x);
183
- state.currentGroup = 5 /* XZ */;
183
+ state.currentGroup = 5 /* CameraHelperAxis.XZ */;
184
184
  MeshBuilder.addTriangle(state, Vec3.origin, x, z);
185
185
  MeshBuilder.addTriangle(state, Vec3.origin, z, x);
186
186
  var xz = Vec3.add(Vec3(), x, z);
187
187
  MeshBuilder.addTriangle(state, xz, x, z);
188
188
  MeshBuilder.addTriangle(state, xz, z, x);
189
- state.currentGroup = 6 /* YZ */;
189
+ state.currentGroup = 6 /* CameraHelperAxis.YZ */;
190
190
  MeshBuilder.addTriangle(state, Vec3.origin, y, z);
191
191
  MeshBuilder.addTriangle(state, Vec3.origin, z, y);
192
192
  var yz = Vec3.add(Vec3(), y, z);
@@ -85,7 +85,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
85
85
  };
86
86
  Canvas3dInteractionHelper.prototype.identify = function (e, t) {
87
87
  var xyChanged = this.startX !== this.endX || this.startY !== this.endY;
88
- if (e === 2 /* Drag */) {
88
+ if (e === 2 /* InputEvent.Drag */) {
89
89
  if (xyChanged && !this.outsideViewport(this.startX, this.startY)) {
90
90
  this.events.drag.next({ current: this.prevLoci, buttons: this.buttons, button: this.button, modifiers: this.modifiers, pageStart: Vec2.create(this.startX, this.startY), pageEnd: Vec2.create(this.endX, this.endY) });
91
91
  this.startX = this.endX;
@@ -100,7 +100,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
100
100
  this.startX = this.endX;
101
101
  this.startY = this.endY;
102
102
  }
103
- if (e === 1 /* Click */) {
103
+ if (e === 1 /* InputEvent.Click */) {
104
104
  var loci_1 = this.getLoci(this.id, this.position);
105
105
  this.events.click.next({ current: loci_1, buttons: this.buttons, button: this.button, modifiers: this.modifiers, page: Vec2.create(this.endX, this.endY), position: this.position });
106
106
  this.prevLoci = loci_1;
@@ -116,7 +116,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
116
116
  if (this.inside && t - this.prevT > 1000 / this.props.maxFps) {
117
117
  this.prevT = t;
118
118
  this.currentIdentifyT = t;
119
- this.identify(this.isInteracting ? 2 /* Drag */ : 0 /* Move */, t);
119
+ this.identify(this.isInteracting ? 2 /* InputEvent.Drag */ : 0 /* InputEvent.Move */, t);
120
120
  }
121
121
  };
122
122
  Canvas3dInteractionHelper.prototype.leave = function () {
@@ -140,7 +140,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
140
140
  this.buttons = buttons;
141
141
  this.button = button;
142
142
  this.modifiers = modifiers;
143
- this.identify(1 /* Click */, 0);
143
+ this.identify(1 /* InputEvent.Click */, 0);
144
144
  };
145
145
  Canvas3dInteractionHelper.prototype.drag = function (x, y, buttons, button, modifiers) {
146
146
  this.endX = x;
@@ -148,7 +148,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
148
148
  this.buttons = buttons;
149
149
  this.button = button;
150
150
  this.modifiers = modifiers;
151
- this.identify(2 /* Drag */, 0);
151
+ this.identify(2 /* InputEvent.Drag */, 0);
152
152
  };
153
153
  Canvas3dInteractionHelper.prototype.modify = function (modifiers) {
154
154
  if (ModifiersKeys.areEqual(modifiers, this.modifiers))
@@ -12,6 +12,7 @@ import { WboitPass } from './wboit';
12
12
  import { AntialiasingPass, PostprocessingPass } from './postprocessing';
13
13
  import { MarkingPass } from './marking';
14
14
  import { createCopyRenderable } from '../../mol-gl/compute/util';
15
+ import { isTimingMode } from '../../mol-util/debug';
15
16
  var DrawPass = /** @class */ (function () {
16
17
  function DrawPass(webgl, width, height, enableWboit) {
17
18
  this.webgl = webgl;
@@ -92,8 +93,12 @@ var DrawPass = /** @class */ (function () {
92
93
  // render transparent primitives and volumes
93
94
  if (scene.opacityAverage < 1 || scene.volumes.renderables.length > 0) {
94
95
  this.wboit.bind();
95
- renderer.renderWboitTransparent(scene.primitives, camera, this.depthTextureOpaque);
96
- renderer.renderWboitTransparent(scene.volumes, camera, this.depthTextureOpaque);
96
+ if (scene.opacityAverage < 1) {
97
+ renderer.renderWboitTransparent(scene.primitives, camera, this.depthTextureOpaque);
98
+ }
99
+ if (scene.volumes.renderables.length > 0) {
100
+ renderer.renderWboitTransparent(scene.volumes, camera, this.depthTextureOpaque);
101
+ }
97
102
  // evaluate wboit
98
103
  if (PostprocessingPass.isEnabled(postprocessingProps)) {
99
104
  this.postprocessing.target.bind();
@@ -105,7 +110,7 @@ var DrawPass = /** @class */ (function () {
105
110
  }
106
111
  };
107
112
  DrawPass.prototype._renderBlended = function (renderer, camera, scene, toDrawingBuffer, transparentBackground, postprocessingProps) {
108
- var _a, _b;
113
+ var _a, _b, _c, _d;
109
114
  if (toDrawingBuffer) {
110
115
  this.drawTarget.bind();
111
116
  }
@@ -148,9 +153,29 @@ var DrawPass = /** @class */ (function () {
148
153
  (_b = this.colorTarget.depthRenderbuffer) === null || _b === void 0 ? void 0 : _b.attachFramebuffer(this.postprocessing.target.framebuffer);
149
154
  }
150
155
  }
151
- renderer.renderBlendedVolume(scene.volumes, camera, this.depthTextureOpaque);
156
+ if (scene.volumes.renderables.length > 0) {
157
+ var target = PostprocessingPass.isEnabled(postprocessingProps)
158
+ ? this.postprocessing.target : this.colorTarget;
159
+ if (!this.packedDepth) {
160
+ this.depthTextureOpaque.detachFramebuffer(target.framebuffer, 'depth');
161
+ }
162
+ else {
163
+ (_c = this.colorTarget.depthRenderbuffer) === null || _c === void 0 ? void 0 : _c.detachFramebuffer(target.framebuffer);
164
+ }
165
+ target.bind();
166
+ renderer.renderBlendedVolume(scene.volumes, camera, this.depthTextureOpaque);
167
+ if (!this.packedDepth) {
168
+ this.depthTextureOpaque.attachFramebuffer(target.framebuffer, 'depth');
169
+ }
170
+ else {
171
+ (_d = this.colorTarget.depthRenderbuffer) === null || _d === void 0 ? void 0 : _d.attachFramebuffer(target.framebuffer);
172
+ }
173
+ target.bind();
174
+ }
175
+ }
176
+ if (scene.opacityAverage < 1) {
177
+ renderer.renderBlendedTransparent(scene.primitives, camera, null);
152
178
  }
153
- renderer.renderBlendedTransparent(scene.primitives, camera, null);
154
179
  };
155
180
  DrawPass.prototype._render = function (renderer, camera, scene, helper, toDrawingBuffer, props) {
156
181
  var volumeRendering = scene.volumes.renderables.length > 0;
@@ -222,6 +247,8 @@ var DrawPass = /** @class */ (function () {
222
247
  this.webgl.gl.flush();
223
248
  };
224
249
  DrawPass.prototype.render = function (ctx, props, toDrawingBuffer) {
250
+ if (isTimingMode)
251
+ this.webgl.timer.mark('DrawPass.render');
225
252
  var renderer = ctx.renderer, camera = ctx.camera, scene = ctx.scene, helper = ctx.helper;
226
253
  renderer.setTransparentBackground(props.transparentBackground);
227
254
  renderer.setDrawingBufferSize(this.colorTarget.getWidth(), this.colorTarget.getHeight());
@@ -233,6 +260,8 @@ var DrawPass = /** @class */ (function () {
233
260
  else {
234
261
  this._render(renderer, camera, scene, helper, toDrawingBuffer, props);
235
262
  }
263
+ if (isTimingMode)
264
+ this.webgl.timer.markEnd('DrawPass.render');
236
265
  };
237
266
  DrawPass.prototype.getColorTarget = function (postprocessingProps) {
238
267
  if (AntialiasingPass.isEnabled(postprocessingProps)) {
@@ -14,6 +14,7 @@ import { ValueCell } from '../../mol-util';
14
14
  import { ParamDefinition as PD } from '../../mol-util/param-definition';
15
15
  import { quad_vert } from '../../mol-gl/shader/quad.vert';
16
16
  import { fxaa_frag } from '../../mol-gl/shader/fxaa.frag';
17
+ import { isTimingMode } from '../../mol-util/debug';
17
18
  export var FxaaParams = {
18
19
  edgeThresholdMin: PD.Numeric(0.0312, { min: 0.0312, max: 0.0833, step: 0.0001 }, { description: 'Trims the algorithm from processing darks.' }),
19
20
  edgeThresholdMax: PD.Numeric(0.063, { min: 0.063, max: 0.333, step: 0.001 }, { description: 'The minimum amount of local contrast required to apply algorithm.' }),
@@ -65,6 +66,8 @@ var FxaaPass = /** @class */ (function () {
65
66
  }
66
67
  };
67
68
  FxaaPass.prototype.render = function (viewport, target) {
69
+ if (isTimingMode)
70
+ this.webgl.timer.mark('FxaaPass.render');
68
71
  if (target) {
69
72
  target.bind();
70
73
  }
@@ -73,6 +76,8 @@ var FxaaPass = /** @class */ (function () {
73
76
  }
74
77
  this.updateState(viewport);
75
78
  this.renderable.render();
79
+ if (isTimingMode)
80
+ this.webgl.timer.markEnd('FxaaPass.render');
76
81
  };
77
82
  return FxaaPass;
78
83
  }());
@@ -16,6 +16,7 @@ import { quad_vert } from '../../mol-gl/shader/quad.vert';
16
16
  import { overlay_frag } from '../../mol-gl/shader/marking/overlay.frag';
17
17
  import { Color } from '../../mol-util/color';
18
18
  import { edge_frag } from '../../mol-gl/shader/marking/edge.frag';
19
+ import { isTimingMode } from '../../mol-util/debug';
19
20
  export var MarkingParams = {
20
21
  enabled: PD.Boolean(true),
21
22
  highlightEdgeColor: PD.Color(Color.darken(Color.fromNormalizedRgb(1.0, 0.4, 0.6), 1.0)),
@@ -88,6 +89,8 @@ var MarkingPass = /** @class */ (function () {
88
89
  ValueCell.update(overlayValues.uGhostEdgeStrength, ghostEdgeStrength);
89
90
  };
90
91
  MarkingPass.prototype.render = function (viewport, target) {
92
+ if (isTimingMode)
93
+ this.webgl.timer.mark('MarkingPass.render');
91
94
  this.edgesTarget.bind();
92
95
  this.setEdgeState(viewport);
93
96
  this.edge.render();
@@ -99,6 +102,8 @@ var MarkingPass = /** @class */ (function () {
99
102
  }
100
103
  this.setOverlayState(viewport);
101
104
  this.overlay.render();
105
+ if (isTimingMode)
106
+ this.webgl.timer.markEnd('MarkingPass.render');
102
107
  };
103
108
  return MarkingPass;
104
109
  }());
@@ -15,6 +15,7 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
15
15
  import { Camera } from '../../mol-canvas3d/camera';
16
16
  import { quad_vert } from '../../mol-gl/shader/quad.vert';
17
17
  import { compose_frag } from '../../mol-gl/shader/compose.frag';
18
+ import { isTimingMode } from '../../mol-util/debug';
18
19
  var ComposeSchema = __assign(__assign({}, QuadSchema), { tColor: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: UniformSpec('v2'), uWeight: UniformSpec('f') });
19
20
  var ComposeShaderCode = ShaderCode('compose', quad_vert, compose_frag);
20
21
  function getComposeRenderable(ctx, colorTexture) {
@@ -76,6 +77,8 @@ var MultiSamplePass = /** @class */ (function () {
76
77
  var camera = ctx.camera;
77
78
  var _a = this, compose = _a.compose, composeTarget = _a.composeTarget, drawPass = _a.drawPass, webgl = _a.webgl;
78
79
  var gl = webgl.gl, state = webgl.state;
80
+ if (isTimingMode)
81
+ webgl.timer.mark('MultiSamplePass.renderMultiSample');
79
82
  // based on the Multisample Anti-Aliasing Render Pass
80
83
  // contributed to three.js by bhouston / http://clara.io/
81
84
  //
@@ -134,11 +137,15 @@ var MultiSamplePass = /** @class */ (function () {
134
137
  compose.render();
135
138
  camera.viewOffset.enabled = false;
136
139
  camera.update();
140
+ if (isTimingMode)
141
+ webgl.timer.markEnd('MultiSamplePass.renderMultiSample');
137
142
  };
138
143
  MultiSamplePass.prototype.renderTemporalMultiSample = function (sampleIndex, ctx, props, toDrawingBuffer) {
139
144
  var camera = ctx.camera;
140
145
  var _a = this, compose = _a.compose, composeTarget = _a.composeTarget, holdTarget = _a.holdTarget, drawPass = _a.drawPass, webgl = _a.webgl;
141
146
  var gl = webgl.gl, state = webgl.state;
147
+ if (isTimingMode)
148
+ webgl.timer.mark('MultiSamplePass.renderTemporalMultiSample');
142
149
  // based on the Multisample Anti-Aliasing Render Pass
143
150
  // contributed to three.js by bhouston / http://clara.io/
144
151
  //
@@ -226,6 +233,8 @@ var MultiSamplePass = /** @class */ (function () {
226
233
  }
227
234
  camera.viewOffset.enabled = false;
228
235
  camera.update();
236
+ if (isTimingMode)
237
+ webgl.timer.markEnd('MultiSamplePass.renderTemporalMultiSample');
229
238
  return sampleIndex >= offsetList.length ? -2 : sampleIndex;
230
239
  };
231
240
  return MultiSamplePass;
@@ -7,7 +7,6 @@ import { PickingId } from '../../mol-geo/geometry/picking';
7
7
  import { Renderer } from '../../mol-gl/renderer';
8
8
  import { Scene } from '../../mol-gl/scene';
9
9
  import { WebGLContext } from '../../mol-gl/webgl/context';
10
- import { RenderTarget } from '../../mol-gl/webgl/render-target';
11
10
  import { Vec3 } from '../../mol-math/linear-algebra';
12
11
  import { Camera, ICamera } from '../camera';
13
12
  import { StereoCamera } from '../camera/stereo';
@@ -22,13 +21,27 @@ export declare class PickPass {
22
21
  private webgl;
23
22
  private drawPass;
24
23
  readonly pickBaseScale: number;
25
- readonly objectPickTarget: RenderTarget;
26
- readonly instancePickTarget: RenderTarget;
27
- readonly groupPickTarget: RenderTarget;
28
- readonly depthPickTarget: RenderTarget;
24
+ private readonly objectPickTarget;
25
+ private readonly instancePickTarget;
26
+ private readonly groupPickTarget;
27
+ private readonly depthPickTarget;
28
+ private readonly framebuffer;
29
+ private readonly objectPickTexture;
30
+ private readonly instancePickTexture;
31
+ private readonly groupPickTexture;
32
+ private readonly depthPickTexture;
33
+ private readonly objectPickFramebuffer;
34
+ private readonly instancePickFramebuffer;
35
+ private readonly groupPickFramebuffer;
36
+ private readonly depthPickFramebuffer;
37
+ private readonly depthRenderbuffer;
29
38
  private pickWidth;
30
39
  private pickHeight;
31
40
  constructor(webgl: WebGLContext, drawPass: DrawPass, pickBaseScale: number);
41
+ bindObject(): void;
42
+ bindInstance(): void;
43
+ bindGroup(): void;
44
+ bindDepth(): void;
32
45
  get drawingBufferHeight(): number;
33
46
  syncSize(): void;
34
47
  private renderVariant;