npm - molstar - Versions diffs - 3.44.0 → 3.45.0 - Mend

molstar 3.44.0 → 3.45.0

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Files changed (272) hide show

package/lib/mol-repr/structure/representation/putty.d.ts CHANGED Viewed

@@ -20,7 +20,7 @@ export declare const PuttyParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -56,7 +56,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -93,7 +93,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;

package/lib/mol-repr/structure/representation/spacefill.d.ts CHANGED Viewed

@@ -23,7 +23,7 @@ export declare const SpacefillParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;
@@ -66,7 +66,7 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;
@@ -110,7 +110,7 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;

package/lib/mol-repr/structure/units-visual.d.ts CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { Structure, Unit } from '../../mol-model/structure';
@@ -31,7 +32,7 @@ export interface UnitsVisual<P extends RepresentationProps = {}> extends Visual<
 interface UnitsVisualBuilder<P extends StructureParams, G extends Geometry> {
     defaultProps: PD.Values<P>;
     createGeometry(ctx: VisualContext, unit: Unit, structure: Structure, theme: Theme, props: PD.Values<P>, geometry?: G): Promise<G> | G;
-    createLocationIterator(structureGroup: StructureGroup): LocationIterator;
+    createLocationIterator(structureGroup: StructureGroup, props: PD.Values<P>): LocationIterator;
     getLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): Loci;
     eachLocation(loci: Loci, structureGroup: StructureGroup, apply: (interval: Interval) => boolean, isMarking: boolean): boolean;
     setUpdateState(state: VisualUpdateState, newProps: PD.Values<P>, currentProps: PD.Values<P>, newTheme: Theme, currentTheme: Theme, newStructureGroup: StructureGroup, currentStructureGroup: StructureGroup): void;
@@ -51,7 +52,7 @@ export declare const UnitsMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -84,7 +85,7 @@ export declare const UnitsSpheresParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;
@@ -122,10 +123,11 @@ export declare const UnitsCylindersParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     material: PD.Group<PD.Normalize<{
@@ -290,7 +292,7 @@ export declare const UnitsTextureMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/units-visual.js CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 import { __assign } from "tslib";
 import { Structure, Unit, StructureElement, Bond } from '../../mol-model/structure';
@@ -131,7 +132,7 @@ export function UnitsVisual(builder, materialId) {
     }
     function update(newGeometry) {
         if (updateState.createNew) {
-            locationIt = createLocationIterator(newStructureGroup);
+            locationIt = createLocationIterator(newStructureGroup, newProps);
             if (newGeometry) {
                 renderObject = createUnitsRenderObject(newStructureGroup, newGeometry, locationIt, newTheme, newProps, materialId);
                 positionIt = createPositionIterator(newGeometry, renderObject.values);
@@ -146,7 +147,7 @@ export function UnitsVisual(builder, materialId) {
             }
             if (updateState.updateTransform) {
                 // console.log('update transform');
-                locationIt = createLocationIterator(newStructureGroup);
+                locationIt = createLocationIterator(newStructureGroup, newProps);
                 var instanceCount = locationIt.instanceCount, groupCount = locationIt.groupCount;
                 if (newProps.instanceGranularity) {
                     createMarkers(instanceCount, 'instance', renderObject.values);

package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 import { Structure } from '../../../mol-model/structure';
@@ -30,11 +31,12 @@ export declare const InterUnitBondCylinderParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
@@ -83,11 +85,12 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;

package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 import { __assign } from "tslib";
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
@@ -178,7 +179,7 @@ export function InterUnitBondCylinderImpostorVisual(materialId) {
     return ComplexCylindersVisual({
         defaultProps: PD.getDefaultValues(InterUnitBondCylinderParams),
         createGeometry: createInterUnitBondCylinderImpostors,
-        createLocationIterator: BondIterator.fromStructure,
+        createLocationIterator: function (structure, props) { return BondIterator.fromStructure(structure, { includeLocation2: props.colorMode === 'interpolate' }); },
         getLoci: getInterBondLoci,
         eachLocation: eachInterBond,
         setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
@@ -200,6 +201,11 @@ export function InterUnitBondCylinderImpostorVisual(materialId) {
                 !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes) ||
                 newProps.adjustCylinderLength !== currentProps.adjustCylinderLength ||
                 newProps.multipleBonds !== currentProps.multipleBonds);
+            if (newProps.colorMode !== currentProps.colorMode) {
+                state.createGeometry = true;
+                state.updateTransform = true;
+                state.updateColor = true;
+            }
             if (newStructure.interUnitBonds !== currentStructure.interUnitBonds) {
                 state.createGeometry = true;
                 state.updateTransform = true;
@@ -216,7 +222,7 @@ export function InterUnitBondCylinderMeshVisual(materialId) {
     return ComplexMeshVisual({
         defaultProps: PD.getDefaultValues(InterUnitBondCylinderParams),
         createGeometry: createInterUnitBondCylinderMesh,
-        createLocationIterator: BondIterator.fromStructure,
+        createLocationIterator: function (structure) { return BondIterator.fromStructure(structure); },
         getLoci: getInterBondLoci,
         eachLocation: eachInterBond,
         setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {

package/lib/mol-repr/structure/visual/bond-inter-unit-line.js CHANGED Viewed

@@ -112,7 +112,7 @@ export function InterUnitBondLineVisual(materialId) {
     return ComplexLinesVisual({
         defaultProps: PD.getDefaultValues(InterUnitBondLineParams),
         createGeometry: createInterUnitBondLines,
-        createLocationIterator: BondIterator.fromStructure,
+        createLocationIterator: function (structure) { return BondIterator.fromStructure(structure); },
         getLoci: getInterBondLoci,
         eachLocation: eachInterBond,
         setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {

package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts CHANGED Viewed

@@ -3,6 +3,7 @@
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
+ * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 import { Structure } from '../../../mol-model/structure';
@@ -31,11 +32,12 @@ export declare const IntraUnitBondCylinderParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
@@ -84,11 +86,12 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;

package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js CHANGED Viewed

@@ -3,6 +3,7 @@
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
+ * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 import { __assign } from "tslib";
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
@@ -199,7 +200,7 @@ export function IntraUnitBondCylinderImpostorVisual(materialId) {
     return UnitsCylindersVisual({
         defaultProps: PD.getDefaultValues(IntraUnitBondCylinderParams),
         createGeometry: createIntraUnitBondCylinderImpostors,
-        createLocationIterator: BondIterator.fromGroup,
+        createLocationIterator: function (structureGroup, props) { return BondIterator.fromGroup(structureGroup, { includeLocation2: props.colorMode === 'interpolate' }); },
         getLoci: getIntraBondLoci,
         eachLocation: eachIntraBond,
         setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructureGroup, currentStructureGroup) {
@@ -222,6 +223,11 @@ export function IntraUnitBondCylinderImpostorVisual(materialId) {
                 newProps.adjustCylinderLength !== currentProps.adjustCylinderLength ||
                 newProps.aromaticBonds !== currentProps.aromaticBonds ||
                 newProps.multipleBonds !== currentProps.multipleBonds);
+            if (newProps.colorMode !== currentProps.colorMode) {
+                state.createGeometry = true;
+                state.updateTransform = true;
+                state.updateColor = true;
+            }
             var newUnit = newStructureGroup.group.units[0];
             var currentUnit = currentStructureGroup.group.units[0];
             if (Unit.isAtomic(newUnit) && Unit.isAtomic(currentUnit)) {
@@ -242,7 +248,7 @@ export function IntraUnitBondCylinderMeshVisual(materialId) {
     return UnitsMeshVisual({
         defaultProps: PD.getDefaultValues(IntraUnitBondCylinderParams),
         createGeometry: createIntraUnitBondCylinderMesh,
-        createLocationIterator: BondIterator.fromGroup,
+        createLocationIterator: function (structureGroup) { return BondIterator.fromGroup(structureGroup); },
         getLoci: getIntraBondLoci,
         eachLocation: eachIntraBond,
         setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructureGroup, currentStructureGroup) {

package/lib/mol-repr/structure/visual/bond-intra-unit-line.js CHANGED Viewed

@@ -134,7 +134,7 @@ export function IntraUnitBondLineVisual(materialId) {
     return UnitsLinesVisual({
         defaultProps: PD.getDefaultValues(IntraUnitBondLineParams),
         createGeometry: createIntraUnitBondLines,
-        createLocationIterator: BondIterator.fromGroup,
+        createLocationIterator: function (structureGroup) { return BondIterator.fromGroup(structureGroup); },
         getLoci: getIntraBondLoci,
         eachLocation: eachIntraBond,
         setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructureGroup, currentStructureGroup) {

package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts CHANGED Viewed

@@ -18,6 +18,7 @@ export declare const CarbohydrateLinkParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
@@ -25,7 +26,7 @@ export declare const CarbohydrateLinkParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts CHANGED Viewed

@@ -15,7 +15,7 @@ export declare const CarbohydrateSymbolParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts CHANGED Viewed

@@ -18,6 +18,7 @@ export declare const CarbohydrateTerminalLinkParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
@@ -25,7 +26,7 @@ export declare const CarbohydrateTerminalLinkParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/element-sphere.d.ts CHANGED Viewed

@@ -31,7 +31,7 @@ export declare const ElementSphereParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;
@@ -73,7 +73,7 @@ export declare function ElementSphereVisual(materialId: number, structure: Struc
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;
@@ -116,7 +116,7 @@ export declare const StructureElementSphereParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;
@@ -158,7 +158,7 @@ export declare function StructureElementSphereVisual(materialId: number, structu
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;

package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts CHANGED Viewed

@@ -20,7 +20,7 @@ export declare const EllipsoidMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts CHANGED Viewed

@@ -27,7 +27,7 @@ export declare const GaussianSurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -69,7 +69,7 @@ export declare const StructureGaussianSurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -111,7 +111,7 @@ export declare function GaussianSurfaceVisual(materialId: number, structure: Str
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
@@ -152,7 +152,7 @@ export declare function StructureGaussianSurfaceVisual(materialId: number, struc
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts CHANGED Viewed

@@ -24,7 +24,7 @@ export declare const MolecularSurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts CHANGED Viewed

@@ -18,10 +18,11 @@ export declare const NucleotideAtomicBondParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     material: PD.Group<PD.Normalize<{
@@ -54,10 +55,11 @@ export declare function NucleotideAtomicBondVisual(materialId: number, structure
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
+    colorMode: PD.Select<"default" | "interpolate">;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     material: PD.Group<PD.Normalize<{

package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.js CHANGED Viewed

@@ -55,6 +55,7 @@ function createNucleotideAtomicBondImpostor(ctx, unit, structure, theme, props,
     var chainIt = Segmentation.transientSegments(chainAtomSegments, elements);
     var residueIt = Segmentation.transientSegments(residueAtomSegments, elements);
     var i = 0;
+    var colorModeFlag = 2.0;
     while (chainIt.hasNext) {
         residueIt.setSegment(chainIt.move());
         while (residueIt.hasNext) {
@@ -70,13 +71,13 @@ function createNucleotideAtomicBondImpostor(ctx, unit, structure, theme, props,
                     pos(idx.O4_1, pO4_1);
                     // trace cylinder
                     pos(idx.trace, pTrace);
-                    builder.add(pC3_1[0], pC3_1[1], pC3_1[2], pTrace[0], pTrace[1], pTrace[2], 1, true, true, i);
+                    builder.add(pC3_1[0], pC3_1[1], pC3_1[2], pTrace[0], pTrace[1], pTrace[2], 1, true, true, colorModeFlag, i);
                     // sugar ring
-                    builder.add(pC3_1[0], pC3_1[1], pC3_1[2], pC4_1[0], pC4_1[1], pC4_1[2], 1, true, true, i);
-                    builder.add(pC4_1[0], pC4_1[1], pC4_1[2], pO4_1[0], pO4_1[1], pO4_1[2], 1, true, true, i);
-                    builder.add(pO4_1[0], pO4_1[1], pO4_1[2], pC1_1[0], pC1_1[1], pC1_1[2], 1, true, true, i);
-                    builder.add(pC1_1[0], pC1_1[1], pC1_1[2], pC2_1[0], pC2_1[1], pC2_1[2], 1, true, true, i);
-                    builder.add(pC2_1[0], pC2_1[1], pC2_1[2], pC3_1[0], pC3_1[1], pC3_1[2], 1, true, true, i);
+                    builder.add(pC3_1[0], pC3_1[1], pC3_1[2], pC4_1[0], pC4_1[1], pC4_1[2], 1, true, true, colorModeFlag, i);
+                    builder.add(pC4_1[0], pC4_1[1], pC4_1[2], pO4_1[0], pO4_1[1], pO4_1[2], 1, true, true, colorModeFlag, i);
+                    builder.add(pO4_1[0], pO4_1[1], pO4_1[2], pC1_1[0], pC1_1[1], pC1_1[2], 1, true, true, colorModeFlag, i);
+                    builder.add(pC1_1[0], pC1_1[1], pC1_1[2], pC2_1[0], pC2_1[1], pC2_1[2], 1, true, true, colorModeFlag, i);
+                    builder.add(pC2_1[0], pC2_1[1], pC2_1[2], pC3_1[0], pC3_1[1], pC3_1[2], 1, true, true, colorModeFlag, i);
                 }
                 var _b = getNucleotideBaseType(unit, residueIndex), isPurine = _b.isPurine, isPyrimidine = _b.isPyrimidine;
                 if (isPurine) {
@@ -84,12 +85,12 @@ function createNucleotideAtomicBondImpostor(ctx, unit, structure, theme, props,
                     if (idx.C1_1 !== -1 && idx.N9 !== -1) {
                         pos(idx.C1_1, pC1_1);
                         pos(idx.N9, pN9);
-                        builder.add(pN9[0], pN9[1], pN9[2], pC1_1[0], pC1_1[1], pC1_1[2], 1, true, true, i);
+                        builder.add(pN9[0], pN9[1], pN9[2], pC1_1[0], pC1_1[1], pC1_1[2], 1, true, true, colorModeFlag, i);
                     }
                     else if (idx.N9 !== -1 && idx.trace !== -1) {
                         pos(idx.N9, pN9);
                         pos(idx.trace, pTrace);
-                        builder.add(pN9[0], pN9[1], pN9[2], pTrace[0], pTrace[1], pTrace[2], 1, true, true, i);
+                        builder.add(pN9[0], pN9[1], pN9[2], pTrace[0], pTrace[1], pTrace[2], 1, true, true, colorModeFlag, i);
                     }
                     if (hasPurinIndices(idx)) {
                         pos(idx.N1, pN1);
@@ -102,16 +103,16 @@ function createNucleotideAtomicBondImpostor(ctx, unit, structure, theme, props,
                         pos(idx.C8, pC8);
                         pos(idx.N9, pN9);
                         // base ring
-                        builder.add(pN9[0], pN9[1], pN9[2], pC8[0], pC8[1], pC8[2], 1, true, true, i);
-                        builder.add(pC8[0], pC8[1], pC8[2], pN7[0], pN7[1], pN7[2], 1, true, true, i);
-                        builder.add(pN7[0], pN7[1], pN7[2], pC5[0], pC5[1], pC5[2], 1, true, true, i);
-                        builder.add(pC5[0], pC5[1], pC5[2], pC6[0], pC6[1], pC6[2], 1, true, true, i);
-                        builder.add(pC6[0], pC6[1], pC6[2], pN1[0], pN1[1], pN1[2], 1, true, true, i);
-                        builder.add(pN1[0], pN1[1], pN1[2], pC2[0], pC2[1], pC2[2], 1, true, true, i);
-                        builder.add(pC2[0], pC2[1], pC2[2], pN3[0], pN3[1], pN3[2], 1, true, true, i);
-                        builder.add(pN3[0], pN3[1], pN3[2], pC4[0], pC4[1], pC4[2], 1, true, true, i);
-                        builder.add(pC4[0], pC4[1], pC4[2], pC5[0], pC5[1], pC5[2], 1, true, true, i);
-                        builder.add(pC4[0], pC4[1], pC4[2], pN9[0], pN9[1], pN9[2], 1, true, true, i);
+                        builder.add(pN9[0], pN9[1], pN9[2], pC8[0], pC8[1], pC8[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC8[0], pC8[1], pC8[2], pN7[0], pN7[1], pN7[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pN7[0], pN7[1], pN7[2], pC5[0], pC5[1], pC5[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC5[0], pC5[1], pC5[2], pC6[0], pC6[1], pC6[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC6[0], pC6[1], pC6[2], pN1[0], pN1[1], pN1[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pN1[0], pN1[1], pN1[2], pC2[0], pC2[1], pC2[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC2[0], pC2[1], pC2[2], pN3[0], pN3[1], pN3[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pN3[0], pN3[1], pN3[2], pC4[0], pC4[1], pC4[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC4[0], pC4[1], pC4[2], pC5[0], pC5[1], pC5[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC4[0], pC4[1], pC4[2], pN9[0], pN9[1], pN9[2], 1, true, true, colorModeFlag, i);
                     }
                 }
                 else if (isPyrimidine) {
@@ -119,12 +120,12 @@ function createNucleotideAtomicBondImpostor(ctx, unit, structure, theme, props,
                     if (idx.C1_1 !== -1 && idx.N1 !== -1) {
                         pos(idx.N1, pN1);
                         pos(idx.C1_1, pC1_1);
-                        builder.add(pN1[0], pN1[1], pN1[2], pC1_1[0], pC1_1[1], pC1_1[2], 1, true, true, i);
+                        builder.add(pN1[0], pN1[1], pN1[2], pC1_1[0], pC1_1[1], pC1_1[2], 1, true, true, colorModeFlag, i);
                     }
                     else if (idx.N1 !== -1 && idx.trace !== -1) {
                         pos(idx.N1, pN1);
                         pos(idx.trace, pTrace);
-                        builder.add(pN1[0], pN1[1], pN1[2], pTrace[0], pTrace[1], pTrace[2], 1, true, true, i);
+                        builder.add(pN1[0], pN1[1], pN1[2], pTrace[0], pTrace[1], pTrace[2], 1, true, true, colorModeFlag, i);
                     }
                     if (hasPyrimidineIndices(idx)) {
                         pos(idx.N1, pN1);
@@ -134,12 +135,12 @@ function createNucleotideAtomicBondImpostor(ctx, unit, structure, theme, props,
                         pos(idx.C5, pC5);
                         pos(idx.C6, pC6);
                         // base ring
-                        builder.add(pN1[0], pN1[1], pN1[2], pC6[0], pC6[1], pC6[2], 1, true, true, i);
-                        builder.add(pC6[0], pC6[1], pC6[2], pC5[0], pC5[1], pC5[2], 1, true, true, i);
-                        builder.add(pC5[0], pC5[1], pC5[2], pC4[0], pC4[1], pC4[2], 1, true, true, i);
-                        builder.add(pC4[0], pC4[1], pC4[2], pN3[0], pN3[1], pN3[2], 1, true, true, i);
-                        builder.add(pN3[0], pN3[1], pN3[2], pC2[0], pC2[1], pC2[2], 1, true, true, i);
-                        builder.add(pC2[0], pC2[1], pC2[2], pN1[0], pN1[1], pN1[2], 1, true, true, i);
+                        builder.add(pN1[0], pN1[1], pN1[2], pC6[0], pC6[1], pC6[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC6[0], pC6[1], pC6[2], pC5[0], pC5[1], pC5[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC5[0], pC5[1], pC5[2], pC4[0], pC4[1], pC4[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC4[0], pC4[1], pC4[2], pN3[0], pN3[1], pN3[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pN3[0], pN3[1], pN3[2], pC2[0], pC2[1], pC2[2], 1, true, true, colorModeFlag, i);
+                        builder.add(pC2[0], pC2[1], pC2[2], pN1[0], pN1[1], pN1[2], 1, true, true, colorModeFlag, i);
                     }
                 }
                 ++i;

package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts CHANGED Viewed

@@ -17,7 +17,7 @@ export declare const NucleotideAtomicElementParams: {
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;
@@ -55,7 +55,7 @@ export declare function NucleotideAtomicElementVisual(materialId: number, struct
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     solidInterior: PD.BooleanParam;
     clipPrimitive: PD.BooleanParam;
     approximate: PD.BooleanParam;

package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts CHANGED Viewed

@@ -25,7 +25,7 @@ export declare const NucleotideAtomicRingFillParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts CHANGED Viewed

@@ -27,7 +27,7 @@ export declare const NucleotideBlockParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts CHANGED Viewed

@@ -30,7 +30,7 @@ export declare const NucleotideRingParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;

package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts CHANGED Viewed

@@ -19,7 +19,7 @@ export declare const OrientationEllipsoidMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
-    transparentBackfaces: PD.Select<string>;
+    transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;
     bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;