molstar 3.2.0 → 3.4.0

package/lib/commonjs/mol-repr/structure/visual/label-text.js

@@ -16,7 +16,7 @@ var element_1 = require("./util/element");
 var names_1 = require("../../../mol-util/color/names");
 var linear_algebra_1 = require("../../../mol-math/linear-algebra");
 var boundary_helper_1 = require("../../../mol-math/geometry/boundary-helper");
-exports.LabelTextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, complex_visual_1.ComplexTextParams), { background: param_definition_1.ParamDefinition.Boolean(false), backgroundMargin: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }), backgroundColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.black), backgroundOpacity: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 1, step: 0.01 }), borderWidth: param_definition_1.ParamDefinition.Numeric(0.25, { min: 0, max: 0.5, step: 0.01 }), level: param_definition_1.ParamDefinition.Select('residue', [['chain', 'Chain'], ['residue', 'Residue'], ['element', 'Element']], { isEssential: true }), chainScale: param_definition_1.ParamDefinition.Numeric(10, { min: 0, max: 20, step: 0.1 }), residueScale: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 20, step: 0.1 }), elementScale: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 20, step: 0.1 }) });
+exports.LabelTextParams = tslib_1.__assign(tslib_1.__assign({}, complex_visual_1.ComplexTextParams), { background: param_definition_1.ParamDefinition.Boolean(false), backgroundMargin: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }), backgroundColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.black), backgroundOpacity: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 1, step: 0.01 }), borderWidth: param_definition_1.ParamDefinition.Numeric(0.25, { min: 0, max: 0.5, step: 0.01 }), level: param_definition_1.ParamDefinition.Select('residue', [['chain', 'Chain'], ['residue', 'Residue'], ['element', 'Element']], { isEssential: true }), chainScale: param_definition_1.ParamDefinition.Numeric(10, { min: 0, max: 20, step: 0.1 }), residueScale: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 20, step: 0.1 }), elementScale: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 20, step: 0.1 }) });
 function LabelTextVisual(materialId) {
     return (0, complex_visual_1.ComplexTextVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.LabelTextParams),
@@ -134,4 +134,3 @@ function createElementText(ctx, structure, theme, props, text) {
     }
     return builder.getText();
 }
-//# sourceMappingURL=label-text.js.map

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js

@@ -18,12 +18,12 @@ var common_1 = require("./util/common");
 var geometry_1 = require("../../../mol-math/geometry");
 var color_smoothing_1 = require("../../../mol-geo/geometry/mesh/color-smoothing");
 var base_1 = require("../../../mol-geo/geometry/base");
-exports.MolecularSurfaceMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), base_1.ColorSmoothingParams);
+exports.MolecularSurfaceMeshParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), base_1.ColorSmoothingParams);
 //
 function createMolecularSurfaceMesh(ctx, unit, structure, theme, props, mesh) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _a, transform, field, idField, resolution, params, surface, iterations, sphere;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0: return [4 /*yield*/, (0, molecular_surface_2.computeUnitMolecularSurface)(structure, unit, theme.size, props).runInContext(ctx.runtime)];
                 case 1:
@@ -96,4 +96,3 @@ function MolecularSurfaceMeshVisual(materialId) {
     }, materialId);
 }
 exports.MolecularSurfaceMeshVisual = MolecularSurfaceMeshVisual;
-//# sourceMappingURL=molecular-surface-mesh.js.map

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js

@@ -16,12 +16,12 @@ var algorithm_1 = require("../../../mol-geo/util/marching-cubes/algorithm");
 var element_1 = require("./util/element");
 var common_1 = require("./util/common");
 var geometry_1 = require("../../../mol-math/geometry");
-exports.MolecularSurfaceWireframeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsLinesParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0, max: 10, step: 0.1 }) });
+exports.MolecularSurfaceWireframeParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsLinesParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0, max: 10, step: 0.1 }) });
 //
 function createMolecularSurfaceWireframe(ctx, unit, structure, theme, props, lines) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _a, transform, field, idField, params, wireframe, sphere;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0: return [4 /*yield*/, (0, molecular_surface_2.computeUnitMolecularSurface)(structure, unit, theme.size, props).runInContext(ctx.runtime)];
                 case 1:
@@ -64,4 +64,3 @@ function MolecularSurfaceWireframeVisual(materialId) {
     }, materialId);
 }
 exports.MolecularSurfaceWireframeVisual = MolecularSurfaceWireframeVisual;
-//# sourceMappingURL=molecular-surface-wireframe.js.map

package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.js

@@ -130,7 +130,7 @@ function createNucleotideBlockMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.NucleotideBlockParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.NucleotideBlockMeshParams);
+exports.NucleotideBlockParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.NucleotideBlockMeshParams);
 function NucleotideBlockVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.NucleotideBlockParams),
@@ -145,4 +145,3 @@ function NucleotideBlockVisual(materialId) {
     }, materialId);
 }
 exports.NucleotideBlockVisual = NucleotideBlockVisual;
-//# sourceMappingURL=nucleotide-block-mesh.js.map

package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.js

@@ -184,7 +184,7 @@ function createNucleotideRingMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.NucleotideRingParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.NucleotideRingMeshParams);
+exports.NucleotideRingParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.NucleotideRingMeshParams);
 function NucleotideRingVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.NucleotideRingParams),
@@ -199,4 +199,3 @@ function NucleotideRingVisual(materialId) {
     }, materialId);
 }
 exports.NucleotideRingVisual = NucleotideRingVisual;
-//# sourceMappingURL=nucleotide-ring-mesh.js.map

package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js

@@ -19,7 +19,7 @@ var int_1 = require("../../../mol-data/int");
 var loci_1 = require("../../../mol-model/loci");
 var location_iterator_1 = require("../../../mol-geo/util/location-iterator");
 var base_1 = require("../../../mol-geo/geometry/base");
-exports.OrientationEllipsoidMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 2, step: 0.1 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo) });
+exports.OrientationEllipsoidMeshParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 2, step: 0.1 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo) });
 function OrientationEllipsoidMeshVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.OrientationEllipsoidMeshParams),
@@ -115,4 +115,3 @@ function eachUnit(loci, structureGroup, apply) {
     }
     return changed;
 }
-//# sourceMappingURL=orientation-ellipsoid-mesh.js.map

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.js

@@ -25,7 +25,7 @@ var backbone_1 = require("./util/polymer/backbone");
 var v3scale = linear_algebra_1.Vec3.scale;
 var v3add = linear_algebra_1.Vec3.add;
 var v3sub = linear_algebra_1.Vec3.sub;
-exports.PolymerBackboneCylinderParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsCylindersParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), radialSegments: param_definition_1.ParamDefinition.Numeric(16, { min: 2, max: 56, step: 2 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
+exports.PolymerBackboneCylinderParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsCylindersParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), radialSegments: param_definition_1.ParamDefinition.Numeric(16, { min: 2, max: 56, step: 2 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
 function PolymerBackboneCylinderVisual(materialId, structure, props, webgl) {
     return props.tryUseImpostor && webgl && webgl.extensions.fragDepth
         ? PolymerBackboneCylinderImpostorVisual(materialId)
@@ -121,4 +121,3 @@ function PolymerBackboneCylinderMeshVisual(materialId) {
     }, materialId);
 }
 exports.PolymerBackboneCylinderMeshVisual = PolymerBackboneCylinderMeshVisual;
-//# sourceMappingURL=polymer-backbone-cylinder.js.map

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.js

@@ -21,7 +21,7 @@ var sphere_2 = require("../../../mol-geo/primitive/sphere");
 var spheres_1 = require("../../../mol-geo/geometry/spheres/spheres");
 var spheres_builder_1 = require("../../../mol-geo/geometry/spheres/spheres-builder");
 var backbone_1 = require("./util/polymer/backbone");
-exports.PolymerBackboneSphereParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsSpheresParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
+exports.PolymerBackboneSphereParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsSpheresParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
 function PolymerBackboneSphereVisual(materialId, structure, props, webgl) {
     return props.tryUseImpostor && webgl && webgl.extensions.fragDepth
         ? PolymerBackboneSphereImpostorVisual(materialId)
@@ -98,4 +98,3 @@ function PolymerBackboneSphereMeshVisual(materialId) {
     }, materialId);
 }
 exports.PolymerBackboneSphereMeshVisual = PolymerBackboneSphereMeshVisual;
-//# sourceMappingURL=polymer-backbone-sphere.js.map

package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js

@@ -71,7 +71,7 @@ function createPolymerDirectionWedgeMesh(ctx, unit, structure, theme, props, mes
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerDirectionParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerDirectionWedgeParams);
+exports.PolymerDirectionParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerDirectionWedgeParams);
 function PolymerDirectionVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerDirectionParams),
@@ -85,4 +85,3 @@ function PolymerDirectionVisual(materialId) {
     }, materialId);
 }
 exports.PolymerDirectionVisual = PolymerDirectionVisual;
-//# sourceMappingURL=polymer-direction-wedge.js.map

package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.js

@@ -71,7 +71,7 @@ function createPolymerGapCylinderMesh(ctx, unit, structure, theme, props, mesh)
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerGapParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerGapCylinderParams);
+exports.PolymerGapParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerGapCylinderParams);
 function PolymerGapVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerGapParams),
@@ -86,4 +86,3 @@ function PolymerGapVisual(materialId) {
     }, materialId);
 }
 exports.PolymerGapVisual = PolymerGapVisual;
-//# sourceMappingURL=polymer-gap-cylinder.js.map

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js

@@ -162,7 +162,7 @@ function createPolymerTraceMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerTraceParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerTraceMeshParams);
+exports.PolymerTraceParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerTraceMeshParams);
 function PolymerTraceVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerTraceParams),
@@ -188,4 +188,3 @@ function PolymerTraceVisual(materialId) {
     }, materialId);
 }
 exports.PolymerTraceVisual = PolymerTraceVisual;
-//# sourceMappingURL=polymer-trace-mesh.js.map

package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js

@@ -91,7 +91,7 @@ function createPolymerTubeMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerTubeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerTubeMeshParams);
+exports.PolymerTubeParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerTubeMeshParams);
 function PolymerTubeVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerTubeParams),
@@ -108,4 +108,3 @@ function PolymerTubeVisual(materialId) {
     }, materialId);
 }
 exports.PolymerTubeVisual = PolymerTubeVisual;
-//# sourceMappingURL=polymer-tube-mesh.js.map

package/lib/commonjs/mol-repr/structure/visual/util/bond.js

@@ -24,9 +24,9 @@ exports.BondParams = {
     multipleBonds: param_definition_1.ParamDefinition.Select('symmetric', param_definition_1.ParamDefinition.arrayToOptions(['off', 'symmetric', 'offset'])),
 };
 exports.DefaultBondProps = param_definition_1.ParamDefinition.getDefaultValues(exports.BondParams);
-exports.BondCylinderParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, link_1.LinkCylinderParams), exports.BondParams), { adjustCylinderLength: param_definition_1.ParamDefinition.Boolean(false, { description: 'Shorten cylinders to reduce overlap with spheres. Useful for for transparent bonds. Not working well with aromatic bonds.' }) });
+exports.BondCylinderParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, link_1.LinkCylinderParams), exports.BondParams), { adjustCylinderLength: param_definition_1.ParamDefinition.Boolean(false, { description: 'Shorten cylinders to reduce overlap with spheres. Useful for for transparent bonds. Not working well with aromatic bonds.' }) });
 exports.DefaultBondCylinderProps = param_definition_1.ParamDefinition.getDefaultValues(exports.BondCylinderParams);
-exports.BondLineParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, link_1.LinkLineParams), exports.BondParams);
+exports.BondLineParams = tslib_1.__assign(tslib_1.__assign({}, link_1.LinkLineParams), exports.BondParams);
 exports.DefaultBondLineProps = param_definition_1.ParamDefinition.getDefaultValues(exports.BondLineParams);
 function ignoreBondType(include, exclude, f) {
     return !types_1.BondType.is(include, f) || types_1.BondType.is(exclude, f);
@@ -269,4 +269,3 @@ function eachInterBond(loci, structure, apply, isMarking) {
     return changed;
 }
 exports.eachInterBond = eachInterBond;
-//# sourceMappingURL=bond.js.map

package/lib/commonjs/mol-repr/structure/visual/util/common.js

@@ -123,7 +123,7 @@ function ensureReasonableResolution(box, props, maxCells) {
     if (maxCells === void 0) { maxCells = DefaultMaxCells; }
     var _a = getVolumeSliceInfo(box, props.resolution, maxCells), area = _a.area, areaCells = _a.areaCells, maxAreaCells = _a.maxAreaCells;
     var resolution = areaCells > maxAreaCells ? Math.sqrt(area / maxAreaCells) : props.resolution;
-    return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props), { resolution: resolution });
+    return tslib_1.__assign(tslib_1.__assign({}, props), { resolution: resolution });
 }
 exports.ensureReasonableResolution = ensureReasonableResolution;
 function getConformation(unit) {
@@ -314,4 +314,3 @@ function getStructureExtraRadius(structure) {
     return max;
 }
 exports.getStructureExtraRadius = getStructureExtraRadius;
-//# sourceMappingURL=common.js.map

package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

package/lib/commonjs/mol-repr/structure/visual/util/element.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -70,16 +70,19 @@ function createElementSphereMesh(ctx, unit, structure, theme, props, mesh) {
             maxSize = size;
         (0, sphere_2.addSphere)(builderState, v, size * sizeFactor, detail);
     }
+    var oldBoundingSphere = mesh ? geometry_1.Sphere3D.clone(mesh.boundingSphere) : undefined;
+    var m = mesh_builder_1.MeshBuilder.getMesh(builderState);
+    if (count === 0)
+        return m;
     // re-use boundingSphere if it has not changed much
     var boundingSphere;
     linear_algebra_1.Vec3.scale(center, center, 1 / count);
-    if (mesh && linear_algebra_1.Vec3.distance(center, mesh.boundingSphere.center) / mesh.boundingSphere.radius < 1.0) {
-        boundingSphere = geometry_1.Sphere3D.clone(mesh.boundingSphere);
+    if (oldBoundingSphere && linear_algebra_1.Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        boundingSphere = oldBoundingSphere;
     }
     else {
         boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * sizeFactor + 0.05);
     }
-    var m = mesh_builder_1.MeshBuilder.getMesh(builderState);
     m.setBoundingSphere(boundingSphere);
     return m;
 }
@@ -112,16 +115,19 @@ function createElementSphereImpostor(ctx, unit, structure, theme, props, spheres
         if (size > maxSize)
             maxSize = size;
     }
+    var oldBoundingSphere = spheres ? geometry_1.Sphere3D.clone(spheres.boundingSphere) : undefined;
+    var s = builder.getSpheres();
+    if (count === 0)
+        return s;
     // re-use boundingSphere if it has not changed much
     var boundingSphere;
     linear_algebra_1.Vec3.scale(center, center, 1 / count);
-    if (spheres && linear_algebra_1.Vec3.distance(center, spheres.boundingSphere.center) / spheres.boundingSphere.radius < 1.0) {
-        boundingSphere = geometry_1.Sphere3D.clone(spheres.boundingSphere);
+    if (oldBoundingSphere && linear_algebra_1.Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        boundingSphere = oldBoundingSphere;
     }
     else {
         boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * props.sizeFactor + 0.05);
     }
-    var s = builder.getSpheres();
     s.setBoundingSphere(boundingSphere);
     return s;
 }
@@ -248,4 +254,3 @@ var ElementIterator;
     }
     ElementIterator.fromStructure = fromStructure;
 })(ElementIterator = exports.ElementIterator || (exports.ElementIterator = {}));
-//# sourceMappingURL=element.js.map

package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js

@@ -13,7 +13,7 @@ var gpu_1 = require("../../../../mol-math/geometry/gaussian-density/gpu");
 var common_1 = require("./common");
 var base_1 = require("../../../../mol-geo/geometry/base");
 var cpu_1 = require("../../../../mol-math/geometry/gaussian-density/cpu");
-exports.GaussianDensityParams = (0, tslib_1.__assign)({ resolution: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 20, step: 0.1 }, (0, tslib_1.__assign)({ description: 'Grid resolution/cell spacing.' }, base_1.BaseGeometry.CustomQualityParamInfo)), radiusOffset: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, { description: 'Extra/offset radius added to the atoms/coarse elements for gaussian calculation. Useful to create coarse, low resolution surfaces.' }), smoothness: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0.5, max: 2.5, step: 0.1 }, { description: 'Smoothness of the gausian surface, lower is smoother.' }) }, common_1.CommonSurfaceParams);
+exports.GaussianDensityParams = tslib_1.__assign({ resolution: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 20, step: 0.1 }, tslib_1.__assign({ description: 'Grid resolution/cell spacing.' }, base_1.BaseGeometry.CustomQualityParamInfo)), radiusOffset: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, { description: 'Extra/offset radius added to the atoms/coarse elements for gaussian calculation. Useful to create coarse, low resolution surfaces.' }), smoothness: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0.5, max: 2.5, step: 0.1 }, { description: 'Smoothness of the gausian surface, lower is smoother.' }) }, common_1.CommonSurfaceParams);
 exports.DefaultGaussianDensityProps = param_definition_1.ParamDefinition.getDefaultValues(exports.GaussianDensityParams);
 //
 function getTextureMaxCells(webgl, structure) {
@@ -27,8 +27,8 @@ function computeUnitGaussianDensity(structure, unit, sizeTheme, props) {
     var box = unit.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props);
     var _a = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, p), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, cpu_1.GaussianDensityCPU)(ctx, position, box, radius, p)];
                 case 1: return [2 /*return*/, _a.sent()];
@@ -42,8 +42,8 @@ function computeUnitGaussianDensityTexture(structure, unit, sizeTheme, props, we
     var box = unit.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl, structure));
     var _a = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, p), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture)(webgl, position, box, radius, p, texture)];
         });
     }); });
@@ -54,8 +54,8 @@ function computeUnitGaussianDensityTexture2d(structure, unit, sizeTheme, powerOf
     var box = unit.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl, structure));
     var _a = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, p), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture2d)(webgl, position, box, radius, powerOfTwo, p, texture)];
         });
     }); });
@@ -67,8 +67,8 @@ function computeStructureGaussianDensity(structure, sizeTheme, props) {
     var box = structure.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props);
     var _a = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props.ignoreHydrogens, props.traceOnly), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, cpu_1.GaussianDensityCPU)(ctx, position, box, radius, p)];
                 case 1: return [2 /*return*/, _a.sent()];
@@ -82,8 +82,8 @@ function computeStructureGaussianDensityTexture(structure, sizeTheme, props, web
     var box = structure.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl));
     var _a = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props.ignoreHydrogens, props.traceOnly), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture)(webgl, position, box, radius, p, texture)];
         });
     }); });
@@ -94,11 +94,10 @@ function computeStructureGaussianDensityTexture2d(structure, sizeTheme, powerOfT
     var box = structure.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl));
     var _a = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props.ignoreHydrogens, props.traceOnly), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture2d)(webgl, position, box, radius, powerOfTwo, p, texture)];
         });
     }); });
 }
 exports.computeStructureGaussianDensityTexture2d = computeStructureGaussianDensityTexture2d;
-//# sourceMappingURL=gaussian.js.map

package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts

@@ -9,6 +9,7 @@ import { Mesh } from '../../../../mol-geo/geometry/mesh/mesh';
 import { VisualContext } from '../../../visual';
 import { Lines } from '../../../../mol-geo/geometry/lines/lines';
 import { Cylinders } from '../../../../mol-geo/geometry/cylinders/cylinders';
+import { Sphere3D } from '../../../../mol-math/geometry/primitives/sphere3d';
 export declare const LinkCylinderParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
@@ -75,14 +76,23 @@ export declare const enum LinkStyle {
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
  */
-export declare function createLinkCylinderMesh(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, mesh?: Mesh): Mesh;
+export declare function createLinkCylinderMesh(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, mesh?: Mesh): {
+    mesh: Mesh;
+    boundingSphere?: Sphere3D;
+};
 /**
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
  */
-export declare function createLinkCylinderImpostors(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, cylinders?: Cylinders): Cylinders;
+export declare function createLinkCylinderImpostors(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, cylinders?: Cylinders): {
+    cylinders: Cylinders;
+    boundingSphere?: Sphere3D;
+};
 /**
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
  */
-export declare function createLinkLines(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkLineProps, lines?: Lines): Lines;
+export declare function createLinkLines(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkLineProps, lines?: Lines): {
+    lines: Lines;
+    boundingSphere?: Sphere3D;
+};

package/lib/commonjs/mol-repr/structure/visual/util/link.js

@@ -16,6 +16,7 @@ var lines_1 = require("../../../../mol-geo/geometry/lines/lines");
 var lines_builder_1 = require("../../../../mol-geo/geometry/lines/lines-builder");
 var cylinders_1 = require("../../../../mol-geo/geometry/cylinders/cylinders");
 var cylinders_builder_1 = require("../../../../mol-geo/geometry/cylinders/cylinders-builder");
+var sphere3d_1 = require("../../../../mol-math/geometry/primitives/sphere3d");
 exports.LinkCylinderParams = {
     linkScale: param_definition_1.ParamDefinition.Numeric(0.45, { min: 0, max: 1, step: 0.01 }),
     linkSpacing: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 2, step: 0.01 }),
@@ -79,13 +80,15 @@ var v3dot = linear_algebra_1.Vec3.dot;
 function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
     var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, radius = linkBuilder.radius, ignore = linkBuilder.ignore, stub = linkBuilder.stub;
     if (!linkCount)
-        return mesh_1.Mesh.createEmpty(mesh);
+        return { mesh: mesh_1.Mesh.createEmpty(mesh) };
     var linkScale = props.linkScale, linkSpacing = props.linkSpacing, radialSegments = props.radialSegments, linkCap = props.linkCap, aromaticScale = props.aromaticScale, aromaticSpacing = props.aromaticSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount, dashScale = props.dashScale, dashCap = props.dashCap, stubCap = props.stubCap;
     var vertexCountEstimate = radialSegments * 2 * linkCount * 2;
     var builderState = mesh_builder_1.MeshBuilder.createState(vertexCountEstimate, vertexCountEstimate / 4, mesh);
     var va = (0, linear_algebra_1.Vec3)();
     var vb = (0, linear_algebra_1.Vec3)();
     var vShift = (0, linear_algebra_1.Vec3)();
+    var center = (0, linear_algebra_1.Vec3)();
+    var count = 0;
     var cylinderProps = {
         radiusTop: 1,
         radiusBottom: 1,
@@ -98,6 +101,9 @@ function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
         if (ignore && ignore(edgeIndex))
             continue;
         position(va, vb, edgeIndex);
+        v3add(center, center, va);
+        v3add(center, center, vb);
+        count += 2;
         v3sub(tmpV12, vb, va);
         var dirFlag = v3dot(tmpV12, up) > 0;
         var linkRadius = radius(edgeIndex);
@@ -185,7 +191,18 @@ function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
             (0, cylinder_1.addCylinder)(builderState, va, vb, 0.5, cylinderProps);
         }
     }
-    return mesh_builder_1.MeshBuilder.getMesh(builderState);
+    var oldBoundingSphere = mesh ? sphere3d_1.Sphere3D.clone(mesh.boundingSphere) : undefined;
+    var m = mesh_builder_1.MeshBuilder.getMesh(builderState);
+    if (count === 0)
+        return { mesh: m };
+    // re-use boundingSphere if it has not changed much
+    linear_algebra_1.Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && linear_algebra_1.Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        return { mesh: m, boundingSphere: oldBoundingSphere };
+    }
+    else {
+        return { mesh: m };
+    }
 }
 exports.createLinkCylinderMesh = createLinkCylinderMesh;
 /**
@@ -195,7 +212,7 @@ exports.createLinkCylinderMesh = createLinkCylinderMesh;
 function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders) {
     var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, radius = linkBuilder.radius, ignore = linkBuilder.ignore, stub = linkBuilder.stub;
     if (!linkCount)
-        return cylinders_1.Cylinders.createEmpty(cylinders);
+        return { cylinders: cylinders_1.Cylinders.createEmpty(cylinders) };
     var linkScale = props.linkScale, linkSpacing = props.linkSpacing, linkCap = props.linkCap, aromaticScale = props.aromaticScale, aromaticSpacing = props.aromaticSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount, dashScale = props.dashScale, dashCap = props.dashCap, stubCap = props.stubCap;
     var cylindersCountEstimate = linkCount * 2;
     var builder = cylinders_builder_1.CylindersBuilder.create(cylindersCountEstimate, cylindersCountEstimate / 4, cylinders);
@@ -203,6 +220,8 @@ function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders) {
     var vb = (0, linear_algebra_1.Vec3)();
     var vm = (0, linear_algebra_1.Vec3)();
     var vShift = (0, linear_algebra_1.Vec3)();
+    var center = (0, linear_algebra_1.Vec3)();
+    var count = 0;
     // automatically adjust length for evenly spaced dashed cylinders
     var segmentCount = dashCount % 2 === 1 ? dashCount : dashCount + 1;
     var lengthScale = 0.5 - (0.5 / 2 / segmentCount);
@@ -212,6 +231,9 @@ function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders) {
         if (ignore && ignore(edgeIndex))
             continue;
         position(va, vb, edgeIndex);
+        v3add(center, center, va);
+        v3add(center, center, vb);
+        count += 2;
         var linkRadius = radius(edgeIndex);
         var linkStyle = style ? style(edgeIndex) : 0 /* Solid */;
         var linkStub = stubCap && (stub ? stub(edgeIndex) : false);
@@ -274,7 +296,18 @@ function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders) {
             builder.add(va[0], va[1], va[2], vb[0], vb[1], vb[2], 1, linkCap, linkStub, edgeIndex);
         }
     }
-    return builder.getCylinders();
+    var oldBoundingSphere = cylinders ? sphere3d_1.Sphere3D.clone(cylinders.boundingSphere) : undefined;
+    var c = builder.getCylinders();
+    if (count === 0)
+        return { cylinders: c };
+    // re-use boundingSphere if it has not changed much
+    linear_algebra_1.Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && linear_algebra_1.Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        return { cylinders: c, boundingSphere: oldBoundingSphere };
+    }
+    else {
+        return { cylinders: c };
+    }
 }
 exports.createLinkCylinderImpostors = createLinkCylinderImpostors;
 /**
@@ -284,7 +317,7 @@ exports.createLinkCylinderImpostors = createLinkCylinderImpostors;
 function createLinkLines(ctx, linkBuilder, props, lines) {
     var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, ignore = linkBuilder.ignore;
     if (!linkCount)
-        return lines_1.Lines.createEmpty(lines);
+        return { lines: lines_1.Lines.createEmpty(lines) };
     var linkScale = props.linkScale, linkSpacing = props.linkSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount;
     var linesCountEstimate = linkCount * 2;
     var builder = lines_builder_1.LinesBuilder.create(linesCountEstimate, linesCountEstimate / 4, lines);
@@ -292,6 +325,8 @@ function createLinkLines(ctx, linkBuilder, props, lines) {
     var vb = (0, linear_algebra_1.Vec3)();
     var vm = (0, linear_algebra_1.Vec3)();
     var vShift = (0, linear_algebra_1.Vec3)();
+    var center = (0, linear_algebra_1.Vec3)();
+    var count = 0;
     // automatically adjust length for evenly spaced dashed lines
     var segmentCount = dashCount % 2 === 1 ? dashCount : dashCount + 1;
     var lengthScale = 0.5 - (0.5 / 2 / segmentCount);
@@ -303,6 +338,9 @@ function createLinkLines(ctx, linkBuilder, props, lines) {
         if (ignore && ignore(edgeIndex))
             continue;
         position(va, vb, edgeIndex);
+        v3add(center, center, va);
+        v3add(center, center, vb);
+        count += 2;
         var linkStyle = style ? style(edgeIndex) : 0 /* Solid */;
         if (linkStyle === 0 /* Solid */) {
             v3scale(vm, v3add(vm, va, vb), 0.5);
@@ -360,7 +398,17 @@ function createLinkLines(ctx, linkBuilder, props, lines) {
             builder.add(va[0], va[1], va[2], vb[0], vb[1], vb[2], edgeIndex);
         }
     }
-    return builder.getLines();
+    var oldBoundingSphere = lines ? sphere3d_1.Sphere3D.clone(lines.boundingSphere) : undefined;
+    var l = builder.getLines();
+    if (count === 0)
+        return { lines: l };
+    // re-use boundingSphere if it has not changed much
+    linear_algebra_1.Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && linear_algebra_1.Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        return { lines: l, boundingSphere: oldBoundingSphere };
+    }
+    else {
+        return { lines: l };
+    }
 }
 exports.createLinkLines = createLinkLines;
-//# sourceMappingURL=link.js.map

package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.js

@@ -25,15 +25,15 @@ function getPositionDataAndMaxRadius(structure, unit, sizeTheme, props) {
             maxRadius = r;
         radii[j] = r + probeRadius;
     }
-    return { position: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, position), { radius: radii }), boundary: boundary, maxRadius: maxRadius };
+    return { position: tslib_1.__assign(tslib_1.__assign({}, position), { radius: radii }), boundary: boundary, maxRadius: maxRadius };
 }
 function computeUnitMolecularSurface(structure, unit, sizeTheme, props) {
     var _this = this;
     var box = unit.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props);
     var _a = getPositionDataAndMaxRadius(structure, unit, sizeTheme, p), position = _a.position, boundary = _a.boundary, maxRadius = _a.maxRadius;
-    return mol_task_1.Task.create('Molecular Surface', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Molecular Surface', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, MolecularSurface(ctx, position, boundary, maxRadius, box, p)];
                 case 1: return [2 /*return*/, _a.sent()];
@@ -44,10 +44,9 @@ function computeUnitMolecularSurface(structure, unit, sizeTheme, props) {
 exports.computeUnitMolecularSurface = computeUnitMolecularSurface;
 //
 function MolecularSurface(ctx, position, boundary, maxRadius, box, props) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, molecular_surface_1.calcMolecularSurface)(ctx, position, boundary, maxRadius, box, props)];
         });
     });
 }
-//# sourceMappingURL=molecular-surface.js.map

package/lib/commonjs/mol-repr/structure/visual/util/nucleotide.js

@@ -73,4 +73,3 @@ function eachNucleotideElement(loci, structureGroup, apply) {
     return changed;
 }
 exports.eachNucleotideElement = eachNucleotideElement;
-//# sourceMappingURL=nucleotide.js.map

package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js

@@ -112,4 +112,3 @@ function eachCoarsePolymerBackboneElement(unit, callback) {
         }
     }
 }
-//# sourceMappingURL=backbone.js.map

package/lib/commonjs/mol-repr/structure/visual/util/polymer/curve-segment.js

@@ -132,4 +132,3 @@ function interpolateSizes(state, w0, w1, w2, h0, h1, h2, shift) {
     }
 }
 exports.interpolateSizes = interpolateSizes;
-//# sourceMappingURL=curve-segment.js.map

package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js

@@ -63,4 +63,3 @@ var CoarsePolymerGapIterator = /** @class */ (function () {
     return CoarsePolymerGapIterator;
 }());
 exports.CoarsePolymerGapIterator = CoarsePolymerGapIterator;
-//# sourceMappingURL=gap-iterator.js.map