molstar 3.2.0 → 3.4.0

package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js

@@ -15,6 +15,7 @@ import { OrderedSet, Interval } from '../../../mol-data/int';
 import { EmptyLoci } from '../../../mol-model/loci';
 import { getElementIdx, MetalsSet } from '../../../mol-model/structure/structure/unit/bonds/common';
 import { getAltResidueLociFromId, getAltResidueLoci } from './util/common';
+import { Sphere3D } from '../../../mol-math/geometry';
 function createCarbohydrateTerminalLinkCylinderMesh(ctx, structure, theme, props, mesh) {
     var _a = structure.carbohydrates, terminalLinks = _a.terminalLinks, elements = _a.elements;
     var terminalLinkSizeFactor = props.terminalLinkSizeFactor;
@@ -53,7 +54,15 @@ function createCarbohydrateTerminalLinkCylinderMesh(ctx, structure, theme, props
             return MetalsSet.has(beI) ? 1 /* Dashed */ : 0 /* Solid */;
         }
     };
-    return createLinkCylinderMesh(ctx, builderProps, props, mesh);
+    var _b = createLinkCylinderMesh(ctx, builderProps, props, mesh), m = _b.mesh, boundingSphere = _b.boundingSphere;
+    if (boundingSphere) {
+        m.setBoundingSphere(boundingSphere);
+    }
+    else if (m.triangleCount > 0) {
+        var sphere = Sphere3D.expand(Sphere3D(), structure.boundary.sphere, 1 * terminalLinkSizeFactor);
+        m.setBoundingSphere(sphere);
+    }
+    return m;
 }
 export var CarbohydrateTerminalLinkParams = __assign(__assign(__assign({}, UnitsMeshParams), LinkCylinderParams), { terminalLinkSizeFactor: PD.Numeric(0.2, { min: 0, max: 3, step: 0.01 }) });
 export function CarbohydrateTerminalLinkVisual(materialId) {
@@ -130,4 +139,3 @@ function eachTerminalLink(loci, structure, apply) {
     }
     return changed;
 }
-//# sourceMappingURL=carbohydrate-terminal-link-cylinder.js.map

package/lib/mol-repr/structure/visual/element-cross.js

@@ -69,4 +69,3 @@ export function ElementCrossVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=element-cross.js.map

package/lib/mol-repr/structure/visual/element-point.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/mol-repr/structure/visual/element-point.js

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -11,6 +11,8 @@ import { PointsBuilder } from '../../../mol-geo/geometry/points/points-builder';
 import { Vec3 } from '../../../mol-math/linear-algebra';
 import { ElementIterator, getElementLoci, eachElement, makeElementIgnoreTest } from './util/element';
 import { Sphere3D } from '../../../mol-math/geometry';
+// avoiding namespace lookup improved performance in Chrome (Aug 2020)
+var v3add = Vec3.add;
 export var ElementPointParams = __assign(__assign({}, UnitsPointsParams), { pointSizeAttenuation: PD.Boolean(false), ignoreHydrogens: PD.Boolean(false), traceOnly: PD.Boolean(false) });
 // TODO size
 export function createElementPoint(ctx, unit, structure, theme, props, points) {
@@ -24,23 +26,40 @@ export function createElementPoint(ctx, unit, structure, theme, props, points) {
     var p = Vec3();
     var pos = unit.conformation.invariantPosition;
     var ignore = makeElementIgnoreTest(structure, unit, props);
+    var center = Vec3();
+    var count = 0;
     if (ignore) {
         for (var i = 0; i < n; ++i) {
             if (ignore(elements[i]))
                 continue;
             pos(elements[i], p);
+            v3add(center, center, p);
+            count += 1;
             builder.add(p[0], p[1], p[2], i);
         }
     }
     else {
         for (var i = 0; i < n; ++i) {
             pos(elements[i], p);
+            v3add(center, center, p);
+            count += 1;
             builder.add(p[0], p[1], p[2], i);
         }
     }
+    var oldBoundingSphere = points ? Sphere3D.clone(points.boundingSphere) : undefined;
     var pt = builder.getPoints();
-    var sphere = Sphere3D.expand(Sphere3D(), unit.boundary.sphere, 1 * props.sizeFactor);
-    pt.setBoundingSphere(sphere);
+    if (count === 0)
+        return pt;
+    // re-use boundingSphere if it has not changed much
+    var boundingSphere;
+    Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        boundingSphere = oldBoundingSphere;
+    }
+    else {
+        boundingSphere = Sphere3D.expand(Sphere3D(), unit.boundary.sphere, 1 * props.sizeFactor);
+    }
+    pt.setBoundingSphere(boundingSphere);
     return pt;
 }
 export function ElementPointVisual(materialId) {
@@ -56,4 +75,3 @@ export function ElementPointVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=element-point.js.map

package/lib/mol-repr/structure/visual/element-sphere.js

@@ -49,4 +49,3 @@ export function ElementSphereMeshVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=element-sphere.js.map

package/lib/mol-repr/structure/visual/ellipsoid-mesh.js

@@ -94,4 +94,3 @@ export function createEllipsoidMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-//# sourceMappingURL=ellipsoid-mesh.js.map

package/lib/mol-repr/structure/visual/gaussian-density-volume.js

@@ -125,4 +125,3 @@ export function UnitsGaussianDensityVolumeVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=gaussian-density-volume.js.map

package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js

@@ -367,4 +367,3 @@ export function StructureGaussianSurfaceTextureMeshVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=gaussian-surface-mesh.js.map

package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js

@@ -62,4 +62,3 @@ export function GaussianWireframeVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=gaussian-surface-wireframe.js.map

package/lib/mol-repr/structure/visual/label-text.js

@@ -130,4 +130,3 @@ function createElementText(ctx, structure, theme, props, text) {
     }
     return builder.getText();
 }
-//# sourceMappingURL=label-text.js.map

package/lib/mol-repr/structure/visual/molecular-surface-mesh.js

@@ -92,4 +92,3 @@ export function MolecularSurfaceMeshVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=molecular-surface-mesh.js.map

package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js

@@ -60,4 +60,3 @@ export function MolecularSurfaceWireframeVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=molecular-surface-wireframe.js.map

package/lib/mol-repr/structure/visual/nucleotide-block-mesh.js

@@ -141,4 +141,3 @@ export function NucleotideBlockVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=nucleotide-block-mesh.js.map

package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.js

@@ -195,4 +195,3 @@ export function NucleotideRingVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=nucleotide-ring-mesh.js.map

package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.js

@@ -110,4 +110,3 @@ function eachUnit(loci, structureGroup, apply) {
     }
     return changed;
 }
-//# sourceMappingURL=orientation-ellipsoid-mesh.js.map

package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.js

@@ -115,4 +115,3 @@ export function PolymerBackboneCylinderMeshVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=polymer-backbone-cylinder.js.map

package/lib/mol-repr/structure/visual/polymer-backbone-sphere.js

@@ -92,4 +92,3 @@ export function PolymerBackboneSphereMeshVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=polymer-backbone-sphere.js.map

package/lib/mol-repr/structure/visual/polymer-direction-wedge.js

@@ -81,4 +81,3 @@ export function PolymerDirectionVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=polymer-direction-wedge.js.map

package/lib/mol-repr/structure/visual/polymer-gap-cylinder.js

@@ -82,4 +82,3 @@ export function PolymerGapVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=polymer-gap-cylinder.js.map

package/lib/mol-repr/structure/visual/polymer-trace-mesh.js

@@ -184,4 +184,3 @@ export function PolymerTraceVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=polymer-trace-mesh.js.map

package/lib/mol-repr/structure/visual/polymer-tube-mesh.js

@@ -104,4 +104,3 @@ export function PolymerTubeVisual(materialId) {
         }
     }, materialId);
 }
-//# sourceMappingURL=polymer-tube-mesh.js.map

package/lib/mol-repr/structure/visual/util/bond.js

@@ -259,4 +259,3 @@ export function eachInterBond(loci, structure, apply, isMarking) {
     }
     return changed;
 }
-//# sourceMappingURL=bond.js.map

package/lib/mol-repr/structure/visual/util/common.js

@@ -296,4 +296,3 @@ export function getStructureExtraRadius(structure) {
     }
     return max;
 }
-//# sourceMappingURL=common.js.map

package/lib/mol-repr/structure/visual/util/element.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

package/lib/mol-repr/structure/visual/util/element.js

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -66,16 +66,19 @@ export function createElementSphereMesh(ctx, unit, structure, theme, props, mesh
             maxSize = size;
         addSphere(builderState, v, size * sizeFactor, detail);
     }
+    var oldBoundingSphere = mesh ? Sphere3D.clone(mesh.boundingSphere) : undefined;
+    var m = MeshBuilder.getMesh(builderState);
+    if (count === 0)
+        return m;
     // re-use boundingSphere if it has not changed much
     var boundingSphere;
     Vec3.scale(center, center, 1 / count);
-    if (mesh && Vec3.distance(center, mesh.boundingSphere.center) / mesh.boundingSphere.radius < 1.0) {
-        boundingSphere = Sphere3D.clone(mesh.boundingSphere);
+    if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        boundingSphere = oldBoundingSphere;
     }
     else {
         boundingSphere = Sphere3D.expand(Sphere3D(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * sizeFactor + 0.05);
     }
-    var m = MeshBuilder.getMesh(builderState);
     m.setBoundingSphere(boundingSphere);
     return m;
 }
@@ -107,16 +110,19 @@ export function createElementSphereImpostor(ctx, unit, structure, theme, props,
         if (size > maxSize)
             maxSize = size;
     }
+    var oldBoundingSphere = spheres ? Sphere3D.clone(spheres.boundingSphere) : undefined;
+    var s = builder.getSpheres();
+    if (count === 0)
+        return s;
     // re-use boundingSphere if it has not changed much
     var boundingSphere;
     Vec3.scale(center, center, 1 / count);
-    if (spheres && Vec3.distance(center, spheres.boundingSphere.center) / spheres.boundingSphere.radius < 1.0) {
-        boundingSphere = Sphere3D.clone(spheres.boundingSphere);
+    if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        boundingSphere = oldBoundingSphere;
     }
     else {
         boundingSphere = Sphere3D.expand(Sphere3D(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * props.sizeFactor + 0.05);
     }
-    var s = builder.getSpheres();
     s.setBoundingSphere(boundingSphere);
     return s;
 }
@@ -238,4 +244,3 @@ export var ElementIterator;
     }
     ElementIterator.fromStructure = fromStructure;
 })(ElementIterator || (ElementIterator = {}));
-//# sourceMappingURL=element.js.map

package/lib/mol-repr/structure/visual/util/gaussian.js

@@ -91,4 +91,3 @@ export function computeStructureGaussianDensityTexture2d(structure, sizeTheme, p
         });
     }); });
 }
-//# sourceMappingURL=gaussian.js.map

package/lib/mol-repr/structure/visual/util/link.d.ts

@@ -9,6 +9,7 @@ import { Mesh } from '../../../../mol-geo/geometry/mesh/mesh';
 import { VisualContext } from '../../../visual';
 import { Lines } from '../../../../mol-geo/geometry/lines/lines';
 import { Cylinders } from '../../../../mol-geo/geometry/cylinders/cylinders';
+import { Sphere3D } from '../../../../mol-math/geometry/primitives/sphere3d';
 export declare const LinkCylinderParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
@@ -75,14 +76,23 @@ export declare const enum LinkStyle {
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
  */
-export declare function createLinkCylinderMesh(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, mesh?: Mesh): Mesh;
+export declare function createLinkCylinderMesh(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, mesh?: Mesh): {
+    mesh: Mesh;
+    boundingSphere?: Sphere3D;
+};
 /**
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
  */
-export declare function createLinkCylinderImpostors(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, cylinders?: Cylinders): Cylinders;
+export declare function createLinkCylinderImpostors(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkCylinderProps, cylinders?: Cylinders): {
+    cylinders: Cylinders;
+    boundingSphere?: Sphere3D;
+};
 /**
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
  */
-export declare function createLinkLines(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkLineProps, lines?: Lines): Lines;
+export declare function createLinkLines(ctx: VisualContext, linkBuilder: LinkBuilderProps, props: LinkLineProps, lines?: Lines): {
+    lines: Lines;
+    boundingSphere?: Sphere3D;
+};

package/lib/mol-repr/structure/visual/util/link.js

@@ -13,6 +13,7 @@ import { Lines } from '../../../../mol-geo/geometry/lines/lines';
 import { LinesBuilder } from '../../../../mol-geo/geometry/lines/lines-builder';
 import { Cylinders } from '../../../../mol-geo/geometry/cylinders/cylinders';
 import { CylindersBuilder } from '../../../../mol-geo/geometry/cylinders/cylinders-builder';
+import { Sphere3D } from '../../../../mol-math/geometry/primitives/sphere3d';
 export var LinkCylinderParams = {
     linkScale: PD.Numeric(0.45, { min: 0, max: 1, step: 0.01 }),
     linkSpacing: PD.Numeric(1, { min: 0, max: 2, step: 0.01 }),
@@ -75,13 +76,15 @@ var v3dot = Vec3.dot;
 export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
     var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, radius = linkBuilder.radius, ignore = linkBuilder.ignore, stub = linkBuilder.stub;
     if (!linkCount)
-        return Mesh.createEmpty(mesh);
+        return { mesh: Mesh.createEmpty(mesh) };
     var linkScale = props.linkScale, linkSpacing = props.linkSpacing, radialSegments = props.radialSegments, linkCap = props.linkCap, aromaticScale = props.aromaticScale, aromaticSpacing = props.aromaticSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount, dashScale = props.dashScale, dashCap = props.dashCap, stubCap = props.stubCap;
     var vertexCountEstimate = radialSegments * 2 * linkCount * 2;
     var builderState = MeshBuilder.createState(vertexCountEstimate, vertexCountEstimate / 4, mesh);
     var va = Vec3();
     var vb = Vec3();
     var vShift = Vec3();
+    var center = Vec3();
+    var count = 0;
     var cylinderProps = {
         radiusTop: 1,
         radiusBottom: 1,
@@ -94,6 +97,9 @@ export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
         if (ignore && ignore(edgeIndex))
             continue;
         position(va, vb, edgeIndex);
+        v3add(center, center, va);
+        v3add(center, center, vb);
+        count += 2;
         v3sub(tmpV12, vb, va);
         var dirFlag = v3dot(tmpV12, up) > 0;
         var linkRadius = radius(edgeIndex);
@@ -181,7 +187,18 @@ export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
             addCylinder(builderState, va, vb, 0.5, cylinderProps);
         }
     }
-    return MeshBuilder.getMesh(builderState);
+    var oldBoundingSphere = mesh ? Sphere3D.clone(mesh.boundingSphere) : undefined;
+    var m = MeshBuilder.getMesh(builderState);
+    if (count === 0)
+        return { mesh: m };
+    // re-use boundingSphere if it has not changed much
+    Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        return { mesh: m, boundingSphere: oldBoundingSphere };
+    }
+    else {
+        return { mesh: m };
+    }
 }
 /**
  * Each edge is included twice to allow for coloring/picking
@@ -190,7 +207,7 @@ export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
 export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders) {
     var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, radius = linkBuilder.radius, ignore = linkBuilder.ignore, stub = linkBuilder.stub;
     if (!linkCount)
-        return Cylinders.createEmpty(cylinders);
+        return { cylinders: Cylinders.createEmpty(cylinders) };
     var linkScale = props.linkScale, linkSpacing = props.linkSpacing, linkCap = props.linkCap, aromaticScale = props.aromaticScale, aromaticSpacing = props.aromaticSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount, dashScale = props.dashScale, dashCap = props.dashCap, stubCap = props.stubCap;
     var cylindersCountEstimate = linkCount * 2;
     var builder = CylindersBuilder.create(cylindersCountEstimate, cylindersCountEstimate / 4, cylinders);
@@ -198,6 +215,8 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
     var vb = Vec3();
     var vm = Vec3();
     var vShift = Vec3();
+    var center = Vec3();
+    var count = 0;
     // automatically adjust length for evenly spaced dashed cylinders
     var segmentCount = dashCount % 2 === 1 ? dashCount : dashCount + 1;
     var lengthScale = 0.5 - (0.5 / 2 / segmentCount);
@@ -207,6 +226,9 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
         if (ignore && ignore(edgeIndex))
             continue;
         position(va, vb, edgeIndex);
+        v3add(center, center, va);
+        v3add(center, center, vb);
+        count += 2;
         var linkRadius = radius(edgeIndex);
         var linkStyle = style ? style(edgeIndex) : 0 /* Solid */;
         var linkStub = stubCap && (stub ? stub(edgeIndex) : false);
@@ -269,7 +291,18 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
             builder.add(va[0], va[1], va[2], vb[0], vb[1], vb[2], 1, linkCap, linkStub, edgeIndex);
         }
     }
-    return builder.getCylinders();
+    var oldBoundingSphere = cylinders ? Sphere3D.clone(cylinders.boundingSphere) : undefined;
+    var c = builder.getCylinders();
+    if (count === 0)
+        return { cylinders: c };
+    // re-use boundingSphere if it has not changed much
+    Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        return { cylinders: c, boundingSphere: oldBoundingSphere };
+    }
+    else {
+        return { cylinders: c };
+    }
 }
 /**
  * Each edge is included twice to allow for coloring/picking
@@ -278,7 +311,7 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
 export function createLinkLines(ctx, linkBuilder, props, lines) {
     var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, ignore = linkBuilder.ignore;
     if (!linkCount)
-        return Lines.createEmpty(lines);
+        return { lines: Lines.createEmpty(lines) };
     var linkScale = props.linkScale, linkSpacing = props.linkSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount;
     var linesCountEstimate = linkCount * 2;
     var builder = LinesBuilder.create(linesCountEstimate, linesCountEstimate / 4, lines);
@@ -286,6 +319,8 @@ export function createLinkLines(ctx, linkBuilder, props, lines) {
     var vb = Vec3();
     var vm = Vec3();
     var vShift = Vec3();
+    var center = Vec3();
+    var count = 0;
     // automatically adjust length for evenly spaced dashed lines
     var segmentCount = dashCount % 2 === 1 ? dashCount : dashCount + 1;
     var lengthScale = 0.5 - (0.5 / 2 / segmentCount);
@@ -297,6 +332,9 @@ export function createLinkLines(ctx, linkBuilder, props, lines) {
         if (ignore && ignore(edgeIndex))
             continue;
         position(va, vb, edgeIndex);
+        v3add(center, center, va);
+        v3add(center, center, vb);
+        count += 2;
         var linkStyle = style ? style(edgeIndex) : 0 /* Solid */;
         if (linkStyle === 0 /* Solid */) {
             v3scale(vm, v3add(vm, va, vb), 0.5);
@@ -354,6 +392,16 @@ export function createLinkLines(ctx, linkBuilder, props, lines) {
             builder.add(va[0], va[1], va[2], vb[0], vb[1], vb[2], edgeIndex);
         }
     }
-    return builder.getLines();
+    var oldBoundingSphere = lines ? Sphere3D.clone(lines.boundingSphere) : undefined;
+    var l = builder.getLines();
+    if (count === 0)
+        return { lines: l };
+    // re-use boundingSphere if it has not changed much
+    Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        return { lines: l, boundingSphere: oldBoundingSphere };
+    }
+    else {
+        return { lines: l };
+    }
 }
-//# sourceMappingURL=link.js.map

package/lib/mol-repr/structure/visual/util/molecular-surface.js

@@ -46,4 +46,3 @@ function MolecularSurface(ctx, position, boundary, maxRadius, box, props) {
         });
     });
 }
-//# sourceMappingURL=molecular-surface.js.map

package/lib/mol-repr/structure/visual/util/nucleotide.js

@@ -68,4 +68,3 @@ export function eachNucleotideElement(loci, structureGroup, apply) {
     }
     return changed;
 }
-//# sourceMappingURL=nucleotide.js.map

package/lib/mol-repr/structure/visual/util/polymer/backbone.js

@@ -106,4 +106,3 @@ function eachCoarsePolymerBackboneElement(unit, callback) {
         }
     }
 }
-//# sourceMappingURL=backbone.js.map

package/lib/mol-repr/structure/visual/util/polymer/curve-segment.js

@@ -124,4 +124,3 @@ export function interpolateSizes(state, w0, w1, w2, h0, h1, h2, shift) {
         }
     }
 }
-//# sourceMappingURL=curve-segment.js.map

package/lib/mol-repr/structure/visual/util/polymer/gap-iterator.js

@@ -59,4 +59,3 @@ var CoarsePolymerGapIterator = /** @class */ (function () {
     return CoarsePolymerGapIterator;
 }());
 export { CoarsePolymerGapIterator };
-//# sourceMappingURL=gap-iterator.js.map

package/lib/mol-repr/structure/visual/util/polymer/trace-iterator.js

@@ -442,4 +442,3 @@ var CoarsePolymerTraceIterator = /** @class */ (function () {
     return CoarsePolymerTraceIterator;
 }());
 export { CoarsePolymerTraceIterator };
-//# sourceMappingURL=trace-iterator.js.map

package/lib/mol-repr/structure/visual/util/polymer.js

@@ -255,4 +255,3 @@ export function eachPolymerGapElement(loci, structureGroup, apply) {
     }
     return changed;
 }
-//# sourceMappingURL=polymer.js.map

package/lib/mol-repr/util.js

@@ -177,4 +177,3 @@ export function getQualityProps(props, data) {
         doubleSided: doubleSided
     };
 }
-//# sourceMappingURL=util.js.map

package/lib/mol-repr/visual.js

@@ -310,4 +310,3 @@ var Visual;
     }
     Visual.setTransform = setTransform;
 })(Visual || (Visual = {}));
-//# sourceMappingURL=visual.js.map

package/lib/mol-repr/volume/direct-volume.js

@@ -128,4 +128,3 @@ export var DirectVolumeRepresentationProvider = VolumeRepresentationProvider({
     defaultSizeTheme: { name: 'uniform' },
     isApplicable: function (volume) { return !Volume.isEmpty(volume); }
 });
-//# sourceMappingURL=direct-volume.js.map

package/lib/mol-repr/volume/isosurface.js

@@ -252,4 +252,3 @@ export var IsosurfaceRepresentationProvider = VolumeRepresentationProvider({
     defaultSizeTheme: { name: 'uniform' },
     isApplicable: function (volume) { return !Volume.isEmpty(volume); }
 });
-//# sourceMappingURL=isosurface.js.map

package/lib/mol-repr/volume/registry.js

@@ -30,4 +30,3 @@ export { VolumeRepresentationRegistry };
         'direct-volume': DirectVolumeRepresentationProvider,
     };
 })(VolumeRepresentationRegistry || (VolumeRepresentationRegistry = {}));
-//# sourceMappingURL=registry.js.map

package/lib/mol-repr/volume/representation.js

@@ -301,4 +301,3 @@ export function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci)
         destroy: destroy
     };
 }
-//# sourceMappingURL=representation.js.map

package/lib/mol-repr/volume/slice.js

@@ -192,4 +192,3 @@ export var SliceRepresentationProvider = VolumeRepresentationProvider({
     defaultSizeTheme: { name: 'uniform' },
     isApplicable: function (volume) { return !Volume.isEmpty(volume); }
 });
-//# sourceMappingURL=slice.js.map

package/lib/mol-repr/volume/util.js

@@ -158,4 +158,3 @@ export function createVolumeTexture3d(volume) {
     }
     return textureVolume;
 }
-//# sourceMappingURL=util.js.map

package/lib/mol-script/compiler.js

@@ -77,4 +77,3 @@
 //     }
 // }
 // export default Compiler
-//# sourceMappingURL=compiler.js.map

package/lib/mol-script/language/builder.d.ts

@@ -10,7 +10,6 @@ export declare namespace MolScriptBuilder {
         '@header': string;
         type: {
             '@header': string;
-            /** atom macromolecular property set */
             bool: MSymbol<import("./symbol").Arguments<import("./symbol").Arguments.PropTypes<{
                 0: import("./symbol").Argument<import("./type").Type.AnyValue>;
             }>>, import("./type").Type.OneOf<boolean>>;

package/lib/mol-script/language/builder.js

@@ -68,4 +68,3 @@ export var MolScriptBuilder;
     MolScriptBuilder.ammpSet = ammpSet;
     ;
 })(MolScriptBuilder || (MolScriptBuilder = {}));
-//# sourceMappingURL=builder.js.map

package/lib/mol-script/language/container.js

@@ -4,4 +4,3 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 export {};
-//# sourceMappingURL=container.js.map

package/lib/mol-script/language/expression-formatter.js

@@ -123,4 +123,3 @@ export function formatMolScript(e) {
     _format(e, writer);
     return writer.getStr();
 }
-//# sourceMappingURL=expression-formatter.js.map

package/lib/mol-script/language/expression.js

@@ -21,4 +21,3 @@ var Expression;
     Expression.isSymbol = isSymbol;
 })(Expression || (Expression = {}));
 export { Expression };
-//# sourceMappingURL=expression.js.map

package/lib/mol-script/language/helpers.js

@@ -48,4 +48,3 @@ function _symbolList(obj, list) {
         _symbolList(obj[childKey], list);
     }
 }
-//# sourceMappingURL=helpers.js.map