molstar 3.1.0 → 3.3.1

package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js

@@ -231,4 +231,3 @@ var ConfalPyramidsUtil;
     }(Utility));
     ConfalPyramidsUtil.UnitWalker = UnitWalker;
 })(ConfalPyramidsUtil = exports.ConfalPyramidsUtil || (exports.ConfalPyramidsUtil = {}));
-//# sourceMappingURL=util.js.map

package/lib/commonjs/extensions/dnatco/index.js

@@ -9,4 +9,3 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.DnatcoConfalPyramids = void 0;
 var behavior_1 = require("./confal-pyramids/behavior");
 Object.defineProperty(exports, "DnatcoConfalPyramids", { enumerable: true, get: function () { return behavior_1.DnatcoConfalPyramids; } });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/g3d/data.js

@@ -68,4 +68,3 @@ function getRawData(ctx, urlOrData, range) {
         });
     });
 }
-//# sourceMappingURL=data.js.map

package/lib/commonjs/extensions/g3d/format.js

@@ -229,4 +229,3 @@ exports.G3DFormat = behavior_1.PluginBehavior.create({
         return class_1;
     }(behavior_1.PluginBehavior.Handler))
 });
-//# sourceMappingURL=format.js.map

package/lib/commonjs/extensions/g3d/model.js

@@ -212,4 +212,3 @@ exports.G3dLabelProvider = {
         return "<b>Start:</b> ".concat(info.start[seqId], " <small>| resolution ").concat(info.resolution, "<small>");
     }
 };
-//# sourceMappingURL=model.js.map

package/lib/commonjs/extensions/geo-export/controls.js

@@ -106,4 +106,3 @@ var GeometryControls = /** @class */ (function (_super) {
     return GeometryControls;
 }(component_1.PluginComponent));
 exports.GeometryControls = GeometryControls;
-//# sourceMappingURL=controls.js.map

package/lib/commonjs/extensions/geo-export/glb-exporter.js

@@ -320,4 +320,3 @@ var GlbExporter = /** @class */ (function (_super) {
     return GlbExporter;
 }(mesh_exporter_1.MeshExporter));
 exports.GlbExporter = GlbExporter;
-//# sourceMappingURL=glb-exporter.js.map

package/lib/commonjs/extensions/geo-export/index.js

@@ -33,4 +33,3 @@ exports.GeometryExport = behavior_1.PluginBehavior.create({
     }(behavior_1.PluginBehavior.Handler)),
     params: function () { return ({}); }
 });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/geo-export/mesh-exporter.js

@@ -454,4 +454,3 @@ var MeshExporter = /** @class */ (function () {
     return MeshExporter;
 }());
 exports.MeshExporter = MeshExporter;
-//# sourceMappingURL=mesh-exporter.js.map

package/lib/commonjs/extensions/geo-export/obj-exporter.js

@@ -209,4 +209,3 @@ var ObjExporter = /** @class */ (function (_super) {
     return ObjExporter;
 }(mesh_exporter_1.MeshExporter));
 exports.ObjExporter = ObjExporter;
-//# sourceMappingURL=obj-exporter.js.map

package/lib/commonjs/extensions/geo-export/render-object-exporter.js

@@ -5,4 +5,3 @@
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=render-object-exporter.js.map

package/lib/commonjs/extensions/geo-export/stl-exporter.js

@@ -128,4 +128,3 @@ var StlExporter = /** @class */ (function (_super) {
     return StlExporter;
 }(mesh_exporter_1.MeshExporter));
 exports.StlExporter = StlExporter;
-//# sourceMappingURL=stl-exporter.js.map

package/lib/commonjs/extensions/geo-export/ui.js

@@ -113,4 +113,3 @@ var GeometryExporterUI = /** @class */ (function (_super) {
     return GeometryExporterUI;
 }(base_1.CollapsableControls));
 exports.GeometryExporterUI = GeometryExporterUI;
-//# sourceMappingURL=ui.js.map

package/lib/commonjs/extensions/geo-export/usdz-exporter.js

@@ -219,4 +219,3 @@ var UsdzExporter = /** @class */ (function (_super) {
     return UsdzExporter;
 }(mesh_exporter_1.MeshExporter));
 exports.UsdzExporter = UsdzExporter;
-//# sourceMappingURL=usdz-exporter.js.map

package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js

@@ -233,4 +233,3 @@ exports.QualityAssessmentQmeanPreset = (0, representation_preset_1.StructureRepr
         });
     }
 });
-//# sourceMappingURL=behavior.js.map

package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js

@@ -122,4 +122,3 @@ exports.PLDDTConfidenceColorThemeProvider = {
         }); }
     }
 };
-//# sourceMappingURL=plddt.js.map

package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js

@@ -108,4 +108,3 @@ exports.QmeanScoreColorThemeProvider = {
         }); }
     }
 };
-//# sourceMappingURL=qmean.js.map

package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js

@@ -127,4 +127,3 @@ exports.QualityAssessmentProvider = custom_model_property_1.CustomModelProperty.
         });
     }); }
 });
-//# sourceMappingURL=prop.js.map

package/lib/commonjs/extensions/model-export/export.js

@@ -126,4 +126,3 @@ function _exportHierarchy(plugin, options) {
         });
     }); });
 }
-//# sourceMappingURL=export.js.map

package/lib/commonjs/extensions/model-export/index.js

@@ -33,4 +33,3 @@ exports.ModelExport = behavior_1.PluginBehavior.create({
     }(behavior_1.PluginBehavior.Handler)),
     params: function () { return ({}); }
 });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/model-export/ui.js

@@ -74,4 +74,3 @@ function ExportControls(_a) {
     }); };
     return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: Params, values: params, onChangeValues: setParams, isDisabled: isBusy || exporting }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: onExport, style: { marginTop: 1 }, disabled: isBusy || hierarchy.structures.length === 0 || exporting, commit: hierarchy.structures.length ? 'on' : 'off' }, { children: label }), void 0)] }, void 0);
 }
-//# sourceMappingURL=ui.js.map

package/lib/commonjs/extensions/mp4-export/controls.js

@@ -139,4 +139,3 @@ var Mp4Controls = /** @class */ (function (_super) {
     return Mp4Controls;
 }(component_1.PluginComponent));
 exports.Mp4Controls = Mp4Controls;
-//# sourceMappingURL=controls.js.map

package/lib/commonjs/extensions/mp4-export/encoder.js

@@ -116,4 +116,3 @@ function validateViewport(params) {
         throw new Error('Viewport exceeds the canvas dimensions.');
     }
 }
-//# sourceMappingURL=encoder.js.map

package/lib/commonjs/extensions/mp4-export/index.js

@@ -33,4 +33,3 @@ exports.Mp4Export = behavior_1.PluginBehavior.create({
     }(behavior_1.PluginBehavior.Handler)),
     params: function () { return ({}); }
 });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/mp4-export/ui.js

@@ -91,4 +91,3 @@ var Mp4EncoderUI = /** @class */ (function (_super) {
     return Mp4EncoderUI;
 }(base_1.CollapsableControls));
 exports.Mp4EncoderUI = Mp4EncoderUI;
-//# sourceMappingURL=ui.js.map

package/lib/commonjs/extensions/pdbe/index.js

@@ -12,4 +12,3 @@ var preferred_assembly_1 = require("./preferred-assembly");
 Object.defineProperty(exports, "PDBePreferredAssembly", { enumerable: true, get: function () { return preferred_assembly_1.PDBePreferredAssembly; } });
 var struct_ref_domain_1 = require("./struct-ref-domain");
 Object.defineProperty(exports, "PDBeStructRefDomain", { enumerable: true, get: function () { return struct_ref_domain_1.PDBeStructRefDomain; } });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/pdbe/preferred-assembly.js

@@ -95,4 +95,3 @@ function asmNameFromJson(modelData, data) {
     }
     return assemblies[0].assembly_id;
 }
-//# sourceMappingURL=preferred-assembly.js.map

package/lib/commonjs/extensions/pdbe/struct-ref-domain.js

@@ -125,4 +125,3 @@ function fromPDBeJson(modelData, data) {
     }
     return db_1.Table.ofRows(PDBeStructRefDomain.Schema.pdbe_struct_ref_domain, rows);
 }
-//# sourceMappingURL=struct-ref-domain.js.map

package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js

@@ -72,4 +72,3 @@ exports.PDBeStructureQualityReport = behavior_1.PluginBehavior.create({
         showTooltip: param_definition_1.ParamDefinition.Boolean(true)
     }); }
 });
-//# sourceMappingURL=behavior.js.map

package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js

@@ -110,4 +110,3 @@ exports.StructureQualityReportColorThemeProvider = {
         detach: function (data) { return data.structure && prop_1.StructureQualityReportProvider.ref(data.structure.models[0], false); }
     }
 };
-//# sourceMappingURL=color.js.map

package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js

@@ -285,4 +285,3 @@ function parseIssueTypes(groupData) {
     }
     return ret;
 }
-//# sourceMappingURL=prop.js.map

package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js

@@ -252,4 +252,3 @@ function tryCreateAssemblySymmetry(plugin, structure, params, initialState) {
     return assemblySymmetry.commit({ revertOnError: true });
 }
 exports.tryCreateAssemblySymmetry = tryCreateAssemblySymmetry;
-//# sourceMappingURL=behavior.js.map

package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js

@@ -98,4 +98,3 @@ exports.AssemblySymmetryClusterColorThemeProvider = {
         detach: function (data) { return data.structure && prop_1.AssemblySymmetryProvider.ref(data.structure, false); }
     }
 };
-//# sourceMappingURL=color.js.map

package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js

@@ -217,4 +217,3 @@ exports.AssemblySymmetryProvider = custom_structure_property_1.CustomStructurePr
         });
     }); }
 });
-//# sourceMappingURL=prop.js.map

package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js

@@ -360,4 +360,3 @@ function AssemblySymmetryRepresentation(ctx, getParams) {
     return representation_2.Representation.createMulti('Assembly Symmetry', ctx, getParams, representation_2.Representation.StateBuilder, AssemblySymmetryVisuals);
 }
 exports.AssemblySymmetryRepresentation = AssemblySymmetryRepresentation;
-//# sourceMappingURL=representation.js.map

package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js

@@ -212,4 +212,3 @@ var EnableAssemblySymmetry3D = mol_state_1.StateAction.build({
         });
     }); });
 });
-//# sourceMappingURL=ui.js.map

package/lib/commonjs/extensions/rcsb/graphql/symmetry.gql.js

@@ -2,4 +2,3 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.symmetry_gql = void 0;
 exports.symmetry_gql = "\nquery AssemblySymmetry($assembly_id: String!, $entry_id: String!) {\n    assembly(assembly_id: $assembly_id, entry_id: $entry_id) {\n        rcsb_struct_symmetry {\n            clusters {\n                avg_rmsd\n                members {\n                    asym_id\n                    pdbx_struct_oper_list_ids\n                }\n            }\n            kind\n            oligomeric_state\n            rotation_axes {\n                order\n                start\n                end\n            }\n            stoichiometry\n            symbol\n            type\n        }\n    }\n}\n";
-//# sourceMappingURL=symmetry.gql.js.map

package/lib/commonjs/extensions/rcsb/graphql/types.d.ts

@@ -476,6 +476,8 @@ export declare type ClustersMembers = {
 export declare type CoreAssembly = {
     /** Get PDB entry that includes this assembly. */
     readonly entry?: Maybe<CoreEntry>;
+    /** Get all pairwise polymer interfaces for this PDB assembly. */
+    readonly interfaces?: Maybe<ReadonlyArray<Maybe<CoreInterface>>>;
     readonly pdbx_struct_assembly?: Maybe<PdbxStructAssembly>;
     readonly pdbx_struct_assembly_auth_evidence?: Maybe<ReadonlyArray<Maybe<PdbxStructAssemblyAuthEvidence>>>;
     readonly pdbx_struct_assembly_gen?: Maybe<ReadonlyArray<Maybe<PdbxStructAssemblyGen>>>;
@@ -714,6 +716,15 @@ export declare type CoreEntry = {
     readonly struct_keywords?: Maybe<StructKeywords>;
     readonly symmetry?: Maybe<Symmetry>;
 };
+export declare type CoreInterface = {
+    readonly rcsb_id: Scalars['String'];
+    readonly rcsb_interface_container_identifiers: RcsbInterfaceContainerIdentifiers;
+    readonly rcsb_interface_info?: Maybe<RcsbInterfaceInfo>;
+    /** List of operations for each interface partner. */
+    readonly rcsb_interface_operator: ReadonlyArray<Maybe<ReadonlyArray<Maybe<ReadonlyArray<Maybe<Scalars['String']>>>>>>;
+    readonly rcsb_interface_partner: ReadonlyArray<Maybe<RcsbInterfacePartner>>;
+    readonly rcsb_latest_revision?: Maybe<RcsbLatestRevision>;
+};
 export declare type CoreNonpolymerEntity = {
     /** Get PDB entry that contains this non-polymer entity. */
     readonly entry?: Maybe<CoreEntry>;
@@ -3132,6 +3143,26 @@ export declare type GeneName = {
     readonly type?: Maybe<Scalars['String']>;
     readonly value?: Maybe<Scalars['String']>;
 };
+export declare type InterfacePartnerFeatureAdditionalProperties = {
+    /**
+     * The additional property name.
+     *
+     * Allowable values:
+     * TO_BE_DEFINED
+     *
+     */
+    readonly name?: Maybe<Scalars['String']>;
+    /** The value(s) of the additional property. */
+    readonly values?: Maybe<ReadonlyArray<Maybe<Scalars['ObjectScalar']>>>;
+};
+export declare type InterfacePartnerFeatureFeaturePositions = {
+    /** An identifier for the monomer at which this segment of the feature begins. */
+    readonly beg_seq_id: Scalars['Int'];
+    /** An identifier for the monomer at which this segment of the feature ends. */
+    readonly end_seq_id?: Maybe<Scalars['Int']>;
+    /** The value(s) of the feature over the monomer segment. */
+    readonly values?: Maybe<ReadonlyArray<Maybe<Scalars['Float']>>>;
+};
 export declare type PdbxAuditRevisionCategory = {
     /**
      * The category updated in the pdbx_audit_revision_category record.
@@ -6631,6 +6662,10 @@ export declare type Query = {
     readonly entries?: Maybe<ReadonlyArray<Maybe<CoreEntry>>>;
     /** Get PDB entry given the PDB id. */
     readonly entry?: Maybe<CoreEntry>;
+    /** Get a pairwise polymeric interface given the PDB ID, ASSEMBLY ID and INTERFACE ID. */
+    readonly interface?: Maybe<CoreInterface>;
+    /** Get a list of pairwise polymeric interfaces given a list of INTERFACE IDs. Here INTERFACE ID is a compound identifier that includes entry_id, assembly_id and interface_id e.g. 1XXX-1.1. */
+    readonly interfaces?: Maybe<ReadonlyArray<Maybe<CoreInterface>>>;
     /** Get a list of PDB non-polymer entities given a list of ENTITY IDs. Here ENTITY ID is a compound identifier that includes entry_id and entity_id separated by '_', e.g. 1XXX_1. */
     readonly nonpolymer_entities?: Maybe<ReadonlyArray<Maybe<CoreNonpolymerEntity>>>;
     /** Get a PDB non-polymer entity, given the PDB ID and ENTITY ID. Here ENTITY ID is a '1', '2', '3', etc. */
@@ -6696,6 +6731,16 @@ export declare type QueryEntryArgs = {
     entry_id: Scalars['String'];
 };
 /** Query root */
+export declare type QueryInterfaceArgs = {
+    assembly_id: Scalars['String'];
+    entry_id: Scalars['String'];
+    interface_id: Scalars['String'];
+};
+/** Query root */
+export declare type QueryInterfacesArgs = {
+    interface_ids: ReadonlyArray<Scalars['String']>;
+};
+/** Query root */
 export declare type QueryNonpolymer_EntitiesArgs = {
     entity_ids: ReadonlyArray<Scalars['String']>;
 };
@@ -6796,6 +6841,8 @@ export declare type RcsbAssemblyContainerIdentifiers = {
     readonly assembly_id: Scalars['String'];
     /** Entry identifier for the container. */
     readonly entry_id: Scalars['String'];
+    /** List of binary interface Ids within the assembly (it points to interface id collection). */
+    readonly interface_ids?: Maybe<ReadonlyArray<Maybe<Scalars['String']>>>;
     /**
      * A unique identifier for each object in this assembly container formed by
      *  a dash separated concatenation of entry and assembly identifiers.
@@ -6853,6 +6900,24 @@ export declare type RcsbAssemblyInfo = {
      *  This is the total count of non-polymer entity instances generated in the assembly coordinate data.
      */
     readonly nonpolymer_entity_instance_count?: Maybe<Scalars['Int']>;
+    /** Number of heterologous (both binding sites are different) interface entities */
+    readonly num_heterologous_interface_entities?: Maybe<Scalars['Int']>;
+    /** Number of heteromeric (both partners are different polymeric entities) interface entities */
+    readonly num_heteromeric_interface_entities?: Maybe<Scalars['Int']>;
+    /** Number of homomeric (both partners are the same polymeric entity) interface entities */
+    readonly num_homomeric_interface_entities?: Maybe<Scalars['Int']>;
+    /** Number of polymer-polymer interface entities, grouping equivalent interfaces at the entity level (i.e. same entity_ids on either side, with similar but not identical binding sites) */
+    readonly num_interface_entities?: Maybe<Scalars['Int']>;
+    /** Number of geometrically equivalent (i.e. same asym_ids on either side) polymer-polymer interfaces in the assembly */
+    readonly num_interfaces?: Maybe<Scalars['Int']>;
+    /** Number of isologous (both binding sites are same, i.e. interface is symmetric) interface entities */
+    readonly num_isologous_interface_entities?: Maybe<Scalars['Int']>;
+    /** Number of nucleic acid-nucleic acid interface entities */
+    readonly num_na_interface_entities?: Maybe<Scalars['Int']>;
+    /** Number of protein-nucleic acid interface entities */
+    readonly num_prot_na_interface_entities?: Maybe<Scalars['Int']>;
+    /** Number of protein-protein interface entities */
+    readonly num_protein_interface_entities?: Maybe<Scalars['Int']>;
     /** The assembly non-hydrogen polymer entity atomic coordinate count. */
     readonly polymer_atom_count?: Maybe<Scalars['Int']>;
     /**
@@ -6928,6 +6993,10 @@ export declare type RcsbAssemblyInfo = {
      *  This is the total count of solvent entity instances generated in the assembly coordinate data.
      */
     readonly solvent_entity_instance_count?: Maybe<Scalars['Int']>;
+    /** Total buried surface area calculated as the sum of buried surface areas over all interfaces */
+    readonly total_assembly_buried_surface_area?: Maybe<Scalars['Float']>;
+    /** Total number of interfacing residues in the assembly, calculated as the sum of interfacing residues over all interfaces */
+    readonly total_number_interface_residues?: Maybe<Scalars['Int']>;
     /**
      * The number of unmodeled polymer monomers in the assembly coordinate data. This is
      *  the total count of monomers with unreported coordinate data for all polymer
@@ -8614,6 +8683,94 @@ export declare type RcsbGenomicLineage = {
      */
     readonly name?: Maybe<Scalars['String']>;
 };
+export declare type RcsbInterfaceContainerIdentifiers = {
+    /** This item references an assembly in pdbx_struct_assembly */
+    readonly assembly_id: Scalars['String'];
+    /** Entry identifier for the container. */
+    readonly entry_id: Scalars['String'];
+    /**
+     * Identifier for NCS-equivalent interfaces within the assembly (same entity_ids on both sides)
+     *
+     * Examples:
+     * 1, 2
+     *
+     */
+    readonly interface_entity_id?: Maybe<Scalars['String']>;
+    /**
+     * Identifier for the geometrically equivalent (same asym_ids on either side) interfaces within the assembly
+     *
+     * Examples:
+     * 1, 2
+     *
+     */
+    readonly interface_id: Scalars['String'];
+    /**
+     * Unique identifier for the document
+     *
+     * Examples:
+     * 2UZI-1.A.B?1
+     *
+     */
+    readonly rcsb_id: Scalars['String'];
+};
+export declare type RcsbInterfaceInfo = {
+    /** Total interface buried surface area */
+    readonly interface_area?: Maybe<Scalars['Float']>;
+    /** Allowable values: homo, hetero. */
+    readonly interface_character?: Maybe<Scalars['String']>;
+    /** Number of core interface residues, defined as those that bury >90% accessible surface area with respect to the unbound state */
+    readonly num_core_interface_residues?: Maybe<Scalars['Int']>;
+    /** Number of interface residues, defined as those with burial fraction > 0 */
+    readonly num_interface_residues?: Maybe<Scalars['Int']>;
+    /** Allowable values: Nucleic acid (only), Protein (only), Protein/NA. */
+    readonly polymer_composition?: Maybe<Scalars['String']>;
+    /** The Jaccard score (intersection over union) of interface contacts in homomeric interfaces, comparing contact sets left-right vs right-left. High values indicate isologous (symmetric) interfaces, with value=1 if perfectly symmetric (e.g. crystallographic symmetry) */
+    readonly self_jaccard_contact_score?: Maybe<Scalars['Float']>;
+};
+export declare type RcsbInterfacePartner = {
+    readonly interface_partner_feature?: Maybe<ReadonlyArray<Maybe<RcsbInterfacePartnerInterfacePartnerFeature>>>;
+    readonly interface_partner_identifier?: Maybe<RcsbInterfacePartnerInterfacePartnerIdentifier>;
+};
+export declare type RcsbInterfacePartnerInterfacePartnerFeature = {
+    readonly additional_properties?: Maybe<ReadonlyArray<Maybe<InterfacePartnerFeatureAdditionalProperties>>>;
+    /**
+     * Identifies the version of the feature assignment.
+     *
+     * Examples:
+     * V4_0_2
+     *
+     */
+    readonly assignment_version?: Maybe<Scalars['String']>;
+    /** A description for the feature. */
+    readonly description?: Maybe<Scalars['String']>;
+    /** An identifier for the feature. */
+    readonly feature_id?: Maybe<Scalars['String']>;
+    readonly feature_positions?: Maybe<ReadonlyArray<Maybe<InterfacePartnerFeatureFeaturePositions>>>;
+    /** A name for the feature. */
+    readonly name?: Maybe<Scalars['String']>;
+    /**
+     * Code identifying the individual, organization or program that assigned the feature.
+     *
+     * Examples:
+     * NACCESS
+     *
+     */
+    readonly provenance_source?: Maybe<Scalars['String']>;
+    /**
+     * A type or category of the feature.
+     *
+     * Allowable values:
+     * ASA_UNBOUND, ASA_BOUND
+     *
+     */
+    readonly type?: Maybe<Scalars['String']>;
+};
+export declare type RcsbInterfacePartnerInterfacePartnerIdentifier = {
+    /** Instance identifier for this container. */
+    readonly asym_id: Scalars['String'];
+    /** Polymer entity identifier for the container. */
+    readonly entity_id: Scalars['String'];
+};
 export declare type RcsbLatestRevision = {
     /** The major version number of the latest revision. */
     readonly major_revision?: Maybe<Scalars['Int']>;
@@ -10016,7 +10173,7 @@ export declare type RcsbPolymerInstanceFeature = {
      * A type or category of the feature.
      *
      * Allowable values:
-     * ANGLE_OUTLIER, BINDING_SITE, BOND_OUTLIER, C-MANNOSYLATION_SITE, CATH, CIS-PEPTIDE, ECOD, HELIX_P, MEMBRANE_SEGMENT, MOGUL_ANGLE_OUTLIER, MOGUL_BOND_OUTLIER, N-GLYCOSYLATION_SITE, O-GLYCOSYLATION_SITE, RAMACHANDRAN_OUTLIER, ROTAMER_OUTLIER, RSCC_OUTLIER, RSRZ_OUTLIER, S-GLYCOSYLATION_SITE, SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE, SCOP, SCOP2B_SUPERFAMILY, SCOP2_FAMILY, SCOP2_SUPERFAMILY, SHEET, STEREO_OUTLIER, UNASSIGNED_SEC_STRUCT, UNOBSERVED_ATOM_XYZ, UNOBSERVED_RESIDUE_XYZ, ZERO_OCCUPANCY_ATOM_XYZ, ZERO_OCCUPANCY_RESIDUE_XYZ
+     * ANGLE_OUTLIER, BINDING_SITE, BOND_OUTLIER, C-MANNOSYLATION_SITE, CATH, CIS-PEPTIDE, ECOD, HELIX_P, MEMBRANE_SEGMENT, MOGUL_ANGLE_OUTLIER, MOGUL_BOND_OUTLIER, N-GLYCOSYLATION_SITE, O-GLYCOSYLATION_SITE, RAMACHANDRAN_OUTLIER, ROTAMER_OUTLIER, RSCC_OUTLIER, RSRZ_OUTLIER, S-GLYCOSYLATION_SITE, SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS, SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE, SCOP, SCOP2B_SUPERFAMILY, SCOP2_FAMILY, SCOP2_SUPERFAMILY, SHEET, STEREO_OUTLIER, UNASSIGNED_SEC_STRUCT, UNOBSERVED_ATOM_XYZ, UNOBSERVED_RESIDUE_XYZ, ZERO_OCCUPANCY_ATOM_XYZ, ZERO_OCCUPANCY_RESIDUE_XYZ, ASA
      *
      */
     readonly type?: Maybe<Scalars['String']>;

package/lib/commonjs/extensions/rcsb/graphql/types.js

@@ -1,3 +1,2 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=types.js.map

package/lib/commonjs/extensions/rcsb/index.js

@@ -10,4 +10,3 @@ var behavior_1 = require("./assembly-symmetry/behavior");
 Object.defineProperty(exports, "RCSBAssemblySymmetry", { enumerable: true, get: function () { return behavior_1.RCSBAssemblySymmetry; } });
 var behavior_2 = require("./validation-report/behavior");
 Object.defineProperty(exports, "RCSBValidationReport", { enumerable: true, get: function () { return behavior_2.RCSBValidationReport; } });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/rcsb/validation-report/behavior.js

@@ -418,4 +418,3 @@ exports.ValidationReportRandomCoilIndexPreset = (0, representation_preset_1.Stru
         });
     }
 });
-//# sourceMappingURL=behavior.js.map

package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js

@@ -76,4 +76,3 @@ exports.DensityFitColorThemeProvider = {
         detach: function (data) { return data.structure && prop_1.ValidationReportProvider.ref(data.structure.models[0], false); }
     }
 };
-//# sourceMappingURL=density-fit.js.map

package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js

@@ -107,4 +107,3 @@ exports.GeometryQualityColorThemeProvider = {
         detach: function (data) { return data.structure && prop_1.ValidationReportProvider.ref(data.structure.models[0], false); }
     }
 };
-//# sourceMappingURL=geometry-quality.js.map

package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js

@@ -64,4 +64,3 @@ exports.RandomCoilIndexColorThemeProvider = {
         detach: function (data) { return data.structure && prop_1.ValidationReportProvider.ref(data.structure.models[0], false); }
     }
 };
-//# sourceMappingURL=random-coil-index.js.map

package/lib/commonjs/extensions/rcsb/validation-report/prop.js

@@ -487,4 +487,3 @@ function parseValidationReportXml(xml, model) {
     };
     return validationReport;
 }
-//# sourceMappingURL=prop.js.map

package/lib/commonjs/extensions/rcsb/validation-report/representation.js

@@ -21,6 +21,7 @@ var complex_visual_1 = require("../../../mol-repr/structure/complex-visual");
 var color_1 = require("../../../mol-util/color");
 var marker_action_1 = require("../../../mol-util/marker-action");
 var centroid_helper_1 = require("../../../mol-math/geometry/centroid-helper");
+var geometry_1 = require("../../../mol-math/geometry");
 var label_1 = require("../../../mol-theme/label");
 var params_1 = require("../../../mol-repr/structure/params");
 //
@@ -44,7 +45,15 @@ function createIntraUnitClashCylinderMesh(ctx, unit, structure, theme, props, me
         style: function (edgeIndex) { return 6 /* Disk */; },
         radius: function (edgeIndex) { return magnitude[edgeIndex] * sizeFactor; },
     };
-    return (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh);
+    var _a = (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh), m = _a.mesh, boundingSphere = _a.boundingSphere;
+    if (boundingSphere) {
+        m.setBoundingSphere(boundingSphere);
+    }
+    else if (m.triangleCount > 0) {
+        var sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), structure.boundary.sphere, 1 * sizeFactor);
+        m.setBoundingSphere(sphere);
+    }
+    return m;
 }
 exports.IntraUnitClashParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), link_1.LinkCylinderParams), { linkCap: param_definition_1.ParamDefinition.Boolean(true), sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.01 }) });
 function IntraUnitClashVisual(materialId) {
@@ -137,7 +146,15 @@ function createInterUnitClashCylinderMesh(ctx, structure, theme, props, mesh) {
         style: function (edgeIndex) { return 6 /* Disk */; },
         radius: function (edgeIndex) { return edges[edgeIndex].props.magnitude * sizeFactor; }
     };
-    return (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh);
+    var _a = (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh), m = _a.mesh, boundingSphere = _a.boundingSphere;
+    if (boundingSphere) {
+        m.setBoundingSphere(boundingSphere);
+    }
+    else {
+        var sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), structure.boundary.sphere, 1 * sizeFactor);
+        m.setBoundingSphere(sphere);
+    }
+    return m;
 }
 exports.InterUnitClashParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, complex_visual_1.ComplexMeshParams), link_1.LinkCylinderParams), { linkCap: param_definition_1.ParamDefinition.Boolean(true), sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.01 }) });
 function InterUnitClashVisual(materialId) {
@@ -240,4 +257,3 @@ exports.ClashesRepresentationProvider = (0, representation_2.StructureRepresenta
         detach: function (data) { return prop_1.ClashesProvider.ref(data, false); }
     }
 });
-//# sourceMappingURL=representation.js.map

package/lib/commonjs/mol-canvas3d/camera/stereo.js

@@ -126,4 +126,3 @@ function update(camera, props, left, right) {
     linear_algebra_1.Mat4.mul(right.projectionView, right.projection, right.view);
     linear_algebra_1.Mat4.invert(right.inverseProjectionView, right.projectionView);
 }
-//# sourceMappingURL=stereo.js.map

package/lib/commonjs/mol-canvas3d/camera/transition.js

@@ -100,4 +100,3 @@ exports.CameraTransitionManager = CameraTransitionManager;
     CameraTransitionManager.defaultTransition = defaultTransition;
 })(CameraTransitionManager || (CameraTransitionManager = {}));
 exports.CameraTransitionManager = CameraTransitionManager;
-//# sourceMappingURL=transition.js.map

package/lib/commonjs/mol-canvas3d/camera/util.js

@@ -91,4 +91,3 @@ function cameraUnproject(out, point, viewport, inverseProjectionView) {
     return linear_algebra_1.Vec3.transformMat4(out, out, inverseProjectionView);
 }
 exports.cameraUnproject = cameraUnproject;
-//# sourceMappingURL=util.js.map

package/lib/commonjs/mol-canvas3d/camera.js

@@ -331,4 +331,3 @@ function updateClip(camera) {
     camera.fogNear = fogNear;
     camera.fogFar = fogFar;
 }
-//# sourceMappingURL=camera.js.map

package/lib/commonjs/mol-canvas3d/canvas3d.d.ts

@@ -63,6 +63,7 @@ export declare const Canvas3DParams: {
             radius: any;
             bias: any;
             blurKernelSize: any;
+            resolutionScale: any;
         }>, "on">;
         outline: PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
             scale: any;
@@ -215,6 +216,7 @@ export declare const DefaultCanvas3DParams: PD.Values<{
             radius: any;
             bias: any;
             blurKernelSize: any;
+            resolutionScale: any;
         }>, "on">;
         outline: PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
             scale: any;
@@ -394,7 +396,7 @@ interface Canvas3D {
     /** Sets drawPaused = false without starting the built in animation loop */
     resume(): void;
     identify(x: number, y: number): PickData | undefined;
-    mark(loci: Representation.Loci, action: MarkerAction, noDraw?: boolean): void;
+    mark(loci: Representation.Loci, action: MarkerAction): void;
     getLoci(pickingId: PickingId | undefined): Representation.Loci;
     notifyDidDraw: boolean;
     readonly didDraw: BehaviorSubject<now.Timestamp>;