molstar 3.1.0 → 3.3.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.js +0 -1
- package/lib/apps/docking-viewer/viewport.js +5 -5
- package/lib/apps/viewer/app.js +0 -1
- package/lib/apps/viewer/index.js +0 -1
- package/lib/cli/chem-comp-dict/create-ions.js +0 -1
- package/lib/cli/chem-comp-dict/create-table.js +0 -1
- package/lib/cli/chem-comp-dict/util.js +0 -1
- package/lib/cli/cif2bcif/converter.js +0 -1
- package/lib/cli/cif2bcif/index.js +0 -1
- package/lib/cli/cifschema/index.js +0 -1
- package/lib/cli/cifschema/util/cif-dic.js +0 -1
- package/lib/cli/cifschema/util/generate.js +0 -1
- package/lib/cli/cifschema/util/helper.js +0 -1
- package/lib/cli/cifschema/util/schema.js +0 -1
- package/lib/cli/lipid-params/index.js +0 -1
- package/lib/cli/state-docs/index.js +0 -1
- package/lib/cli/state-docs/pd-to-md.js +0 -1
- package/lib/cli/structure-info/helpers.js +0 -1
- package/lib/cli/structure-info/model.js +0 -1
- package/lib/cli/structure-info/volume.js +0 -1
- package/lib/commonjs/apps/docking-viewer/index.js +0 -1
- package/lib/commonjs/apps/docking-viewer/viewport.js +5 -5
- package/lib/commonjs/apps/viewer/app.js +0 -1
- package/lib/commonjs/apps/viewer/index.js +0 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +0 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +0 -1
- package/lib/commonjs/cli/chem-comp-dict/util.js +0 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +0 -1
- package/lib/commonjs/cli/cif2bcif/index.js +0 -1
- package/lib/commonjs/cli/cifschema/index.js +0 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +0 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +0 -1
- package/lib/commonjs/cli/cifschema/util/helper.js +0 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +0 -1
- package/lib/commonjs/cli/lipid-params/index.js +0 -1
- package/lib/commonjs/cli/state-docs/index.js +0 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +0 -1
- package/lib/commonjs/cli/structure-info/helpers.js +0 -1
- package/lib/commonjs/cli/structure-info/model.js +0 -1
- package/lib/commonjs/cli/structure-info/volume.js +0 -1
- package/lib/commonjs/examples/alpha-orbitals/controls.js +0 -1
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +0 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/coloring.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/controls.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/index.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/schemas.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/test.js +0 -1
- package/lib/commonjs/examples/lighting/index.js +2 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +0 -1
- package/lib/commonjs/examples/task.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/collocation.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/data-model.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/density.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +0 -1
- package/lib/commonjs/extensions/anvil/algorithm.js +0 -1
- package/lib/commonjs/extensions/anvil/behavior.js +0 -1
- package/lib/commonjs/extensions/anvil/prop.js +0 -1
- package/lib/commonjs/extensions/anvil/representation.js +0 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +0 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +0 -1
- package/lib/commonjs/extensions/cellpack/curve.js +0 -1
- package/lib/commonjs/extensions/cellpack/data.js +0 -1
- package/lib/commonjs/extensions/cellpack/index.js +0 -1
- package/lib/commonjs/extensions/cellpack/model.js +0 -1
- package/lib/commonjs/extensions/cellpack/preset.js +0 -1
- package/lib/commonjs/extensions/cellpack/property.js +0 -1
- package/lib/commonjs/extensions/cellpack/representation.js +0 -1
- package/lib/commonjs/extensions/cellpack/state.js +0 -1
- package/lib/commonjs/extensions/cellpack/util.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/types.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +0 -1
- package/lib/commonjs/extensions/dnatco/index.js +0 -1
- package/lib/commonjs/extensions/g3d/data.js +0 -1
- package/lib/commonjs/extensions/g3d/format.js +0 -1
- package/lib/commonjs/extensions/g3d/model.js +0 -1
- package/lib/commonjs/extensions/geo-export/controls.js +0 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/index.js +0 -1
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/render-object-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/ui.js +0 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +0 -1
- package/lib/commonjs/extensions/model-export/export.js +0 -1
- package/lib/commonjs/extensions/model-export/index.js +0 -1
- package/lib/commonjs/extensions/model-export/ui.js +0 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +0 -1
- package/lib/commonjs/extensions/mp4-export/encoder.js +0 -1
- package/lib/commonjs/extensions/mp4-export/index.js +0 -1
- package/lib/commonjs/extensions/mp4-export/ui.js +0 -1
- package/lib/commonjs/extensions/pdbe/index.js +0 -1
- package/lib/commonjs/extensions/pdbe/preferred-assembly.js +0 -1
- package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +0 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +0 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +0 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +0 -1
- package/lib/commonjs/extensions/rcsb/graphql/symmetry.gql.js +0 -1
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +158 -1
- package/lib/commonjs/extensions/rcsb/graphql/types.js +0 -1
- package/lib/commonjs/extensions/rcsb/index.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +19 -3
- package/lib/commonjs/mol-canvas3d/camera/stereo.js +0 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.js +0 -1
- package/lib/commonjs/mol-canvas3d/camera/util.js +0 -1
- package/lib/commonjs/mol-canvas3d/camera.js +0 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +3 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.js +32 -25
- package/lib/commonjs/mol-canvas3d/controls/object.js +0 -1
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +12 -10
- package/lib/commonjs/mol-canvas3d/passes/fxaa.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/image.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/marking.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +20 -7
- package/lib/commonjs/mol-canvas3d/passes/passes.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/pick.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +8 -1
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +50 -21
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +0 -1
- package/lib/commonjs/mol-canvas3d/util.js +0 -1
- package/lib/commonjs/mol-data/db/column-helpers.js +0 -1
- package/lib/commonjs/mol-data/db/column.js +0 -1
- package/lib/commonjs/mol-data/db/database.js +0 -1
- package/lib/commonjs/mol-data/db/table.js +0 -1
- package/lib/commonjs/mol-data/db.js +0 -1
- package/lib/commonjs/mol-data/generic/hash-set.js +0 -1
- package/lib/commonjs/mol-data/generic/linked-list.js +0 -1
- package/lib/commonjs/mol-data/generic/unique-array.js +0 -1
- package/lib/commonjs/mol-data/generic.js +0 -1
- package/lib/commonjs/mol-data/index.js +0 -1
- package/lib/commonjs/mol-data/int/impl/interval.js +0 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.js +0 -1
- package/lib/commonjs/mol-data/int/impl/segmentation.js +0 -1
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +0 -1
- package/lib/commonjs/mol-data/int/interval.js +0 -1
- package/lib/commonjs/mol-data/int/linked-index.js +0 -1
- package/lib/commonjs/mol-data/int/map.js +0 -1
- package/lib/commonjs/mol-data/int/ordered-set.js +0 -1
- package/lib/commonjs/mol-data/int/segmentation.js +0 -1
- package/lib/commonjs/mol-data/int/sorted-array.js +0 -1
- package/lib/commonjs/mol-data/int/sorted-ranges.js +0 -1
- package/lib/commonjs/mol-data/int/tuple.js +0 -1
- package/lib/commonjs/mol-data/int.js +0 -1
- package/lib/commonjs/mol-data/iterator.js +0 -1
- package/lib/commonjs/mol-data/util/array.js +0 -1
- package/lib/commonjs/mol-data/util/buckets.js +0 -1
- package/lib/commonjs/mol-data/util/chunked-array.js +0 -1
- package/lib/commonjs/mol-data/util/combination.js +0 -1
- package/lib/commonjs/mol-data/util/equivalence-classes.js +0 -1
- package/lib/commonjs/mol-data/util/grouping.js +0 -1
- package/lib/commonjs/mol-data/util/hash-functions.js +0 -1
- package/lib/commonjs/mol-data/util/interval-iterator.js +0 -1
- package/lib/commonjs/mol-data/util/sort.js +0 -1
- package/lib/commonjs/mol-data/util.js +0 -1
- package/lib/commonjs/mol-geo/geometry/base.js +0 -1
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/color-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +0 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +0 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +0 -1
- package/lib/commonjs/mol-geo/geometry/geometry.js +0 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js +0 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +2 -3
- package/lib/commonjs/mol-geo/geometry/marker-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/laplacian-smoothing.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +0 -1
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/picking.js +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js +0 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +0 -1
- package/lib/commonjs/mol-geo/geometry/substance-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +0 -1
- package/lib/commonjs/mol-geo/geometry/text/text-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +0 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +0 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +0 -1
- package/lib/commonjs/mol-geo/geometry/transform-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +0 -1
- package/lib/commonjs/mol-geo/primitive/box.js +0 -1
- package/lib/commonjs/mol-geo/primitive/cage.js +0 -1
- package/lib/commonjs/mol-geo/primitive/circle.js +0 -1
- package/lib/commonjs/mol-geo/primitive/cylinder.js +0 -1
- package/lib/commonjs/mol-geo/primitive/dodecahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/icosahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/octahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/plane.js +0 -1
- package/lib/commonjs/mol-geo/primitive/polygon.js +0 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/primitive.js +0 -1
- package/lib/commonjs/mol-geo/primitive/prism.js +0 -1
- package/lib/commonjs/mol-geo/primitive/pyramid.js +0 -1
- package/lib/commonjs/mol-geo/primitive/sphere.js +0 -1
- package/lib/commonjs/mol-geo/primitive/spiked-ball.js +0 -1
- package/lib/commonjs/mol-geo/primitive/star.js +0 -1
- package/lib/commonjs/mol-geo/primitive/tetrahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/torus.js +0 -1
- package/lib/commonjs/mol-geo/primitive/wedge.js +0 -1
- package/lib/commonjs/mol-geo/util/location-iterator.js +0 -1
- package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +0 -1
- package/lib/commonjs/mol-geo/util/marching-cubes/builder.js +0 -1
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.js +0 -1
- package/lib/commonjs/mol-geo/util.js +0 -1
- package/lib/commonjs/mol-gl/commit-queue.js +0 -1
- package/lib/commonjs/mol-gl/compute/grid3d.js +0 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +0 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +0 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +0 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +0 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.js +0 -1
- package/lib/commonjs/mol-gl/compute/util.js +0 -1
- package/lib/commonjs/mol-gl/object3d.js +0 -1
- package/lib/commonjs/mol-gl/render-object.js +0 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.js +0 -1
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +0 -1
- package/lib/commonjs/mol-gl/renderable/image.js +0 -1
- package/lib/commonjs/mol-gl/renderable/lines.js +0 -1
- package/lib/commonjs/mol-gl/renderable/mesh.js +0 -1
- package/lib/commonjs/mol-gl/renderable/points.js +0 -1
- package/lib/commonjs/mol-gl/renderable/schema.js +0 -1
- package/lib/commonjs/mol-gl/renderable/spheres.js +0 -1
- package/lib/commonjs/mol-gl/renderable/text.js +0 -1
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +0 -1
- package/lib/commonjs/mol-gl/renderable/util.js +0 -1
- package/lib/commonjs/mol-gl/renderable.js +0 -1
- package/lib/commonjs/mol-gl/renderer.js +3 -5
- package/lib/commonjs/mol-gl/scene.d.ts +2 -1
- package/lib/commonjs/mol-gl/scene.js +14 -3
- package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +0 -1
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- package/lib/mol-util/zip/inflate.js +0 -1
- package/lib/mol-util/zip/util.js +0 -1
- package/lib/mol-util/zip/zip.js +0 -1
- package/lib/servers/common/file-handle.js +0 -1
- package/lib/servers/common/swagger-ui/index.js +0 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js +0 -1
- package/lib/servers/common/util.js +0 -1
- package/lib/servers/model/config.js +0 -1
- package/lib/servers/model/preprocess/converter.js +0 -1
- package/lib/servers/model/preprocess/master.js +0 -1
- package/lib/servers/model/preprocess/parallel.js +0 -1
- package/lib/servers/model/preprocess/preprocess.js +0 -1
- package/lib/servers/model/preprocess/util.js +0 -1
- package/lib/servers/model/preprocess.js +0 -1
- package/lib/servers/model/properties/pdbe.js +0 -1
- package/lib/servers/model/properties/providers/pdbe.js +0 -1
- package/lib/servers/model/properties/providers/wwpdb.js +0 -1
- package/lib/servers/model/properties/wwpdb.js +0 -1
- package/lib/servers/model/property-provider.js +0 -1
- package/lib/servers/model/query/atoms.js +0 -1
- package/lib/servers/model/query/schemas.js +0 -1
- package/lib/servers/model/query.js +0 -1
- package/lib/servers/model/server/api-local.js +0 -1
- package/lib/servers/model/server/api-schema.js +0 -1
- package/lib/servers/model/server/api-web-multiple.js +0 -1
- package/lib/servers/model/server/api-web.js +0 -1
- package/lib/servers/model/server/api.js +0 -1
- package/lib/servers/model/server/cache.js +0 -1
- package/lib/servers/model/server/jobs.js +0 -1
- package/lib/servers/model/server/query.js +0 -1
- package/lib/servers/model/server/structure-wrapper.js +0 -1
- package/lib/servers/model/server.js +0 -1
- package/lib/servers/model/test.js +0 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js +0 -1
- package/lib/servers/model/utils/fetch-retry.js +0 -1
- package/lib/servers/model/utils/tar.js +0 -1
- package/lib/servers/model/utils/writer.js +0 -1
- package/lib/servers/model/version.js +0 -1
- package/lib/servers/plugin-state/api-schema.js +0 -1
- package/lib/servers/plugin-state/config.js +0 -1
- package/lib/servers/plugin-state/index.js +0 -1
- package/lib/servers/plugin-state/version.js +0 -1
- package/lib/servers/volume/common/binary-schema.js +0 -1
- package/lib/servers/volume/common/data-format.js +0 -1
- package/lib/servers/volume/common/file.js +0 -1
- package/lib/servers/volume/config.js +0 -1
- package/lib/servers/volume/pack/data-model.js +0 -1
- package/lib/servers/volume/pack/downsampling.js +0 -1
- package/lib/servers/volume/pack/format/ccp4.js +0 -1
- package/lib/servers/volume/pack/format/dsn6.js +0 -1
- package/lib/servers/volume/pack/format.js +0 -1
- package/lib/servers/volume/pack/main.js +0 -1
- package/lib/servers/volume/pack/sampling.js +0 -1
- package/lib/servers/volume/pack/version.js +0 -1
- package/lib/servers/volume/pack/writer.js +0 -1
- package/lib/servers/volume/pack.js +0 -1
- package/lib/servers/volume/query.js +0 -1
- package/lib/servers/volume/server/algebra/box.js +0 -1
- package/lib/servers/volume/server/algebra/coordinate.js +0 -1
- package/lib/servers/volume/server/api.js +0 -1
- package/lib/servers/volume/server/local-api.js +0 -1
- package/lib/servers/volume/server/query/compose.js +0 -1
- package/lib/servers/volume/server/query/data-model.js +0 -1
- package/lib/servers/volume/server/query/encode.js +0 -1
- package/lib/servers/volume/server/query/execute.js +0 -1
- package/lib/servers/volume/server/query/identify.js +0 -1
- package/lib/servers/volume/server/state.js +0 -1
- package/lib/servers/volume/server/version.js +0 -1
- package/lib/servers/volume/server/web-api.js +0 -1
- package/lib/servers/volume/server/web-schema.js +0 -1
- package/lib/servers/volume/server.js +0 -1
- package/package.json +24 -24
- package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.d.ts +0 -13
- package/lib/mol-model/structure/structure/util/superposition-db-mapping.d.ts +0 -13
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@@ -13,6 +13,7 @@ import { Lines } from '../../../../mol-geo/geometry/lines/lines';
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import { LinesBuilder } from '../../../../mol-geo/geometry/lines/lines-builder';
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import { Cylinders } from '../../../../mol-geo/geometry/cylinders/cylinders';
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import { CylindersBuilder } from '../../../../mol-geo/geometry/cylinders/cylinders-builder';
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import { Sphere3D } from '../../../../mol-math/geometry/primitives/sphere3d';
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export var LinkCylinderParams = {
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linkScale: PD.Numeric(0.45, { min: 0, max: 1, step: 0.01 }),
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linkSpacing: PD.Numeric(1, { min: 0, max: 2, step: 0.01 }),
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@@ -75,13 +76,15 @@ var v3dot = Vec3.dot;
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export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
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var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, radius = linkBuilder.radius, ignore = linkBuilder.ignore, stub = linkBuilder.stub;
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if (!linkCount)
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return Mesh.createEmpty(mesh);
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return { mesh: Mesh.createEmpty(mesh) };
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var linkScale = props.linkScale, linkSpacing = props.linkSpacing, radialSegments = props.radialSegments, linkCap = props.linkCap, aromaticScale = props.aromaticScale, aromaticSpacing = props.aromaticSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount, dashScale = props.dashScale, dashCap = props.dashCap, stubCap = props.stubCap;
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var vertexCountEstimate = radialSegments * 2 * linkCount * 2;
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var builderState = MeshBuilder.createState(vertexCountEstimate, vertexCountEstimate / 4, mesh);
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var va = Vec3();
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var vb = Vec3();
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var vShift = Vec3();
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var center = Vec3();
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var count = 0;
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var cylinderProps = {
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radiusTop: 1,
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radiusBottom: 1,
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@@ -94,6 +97,9 @@ export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
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if (ignore && ignore(edgeIndex))
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continue;
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position(va, vb, edgeIndex);
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v3add(center, center, va);
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v3add(center, center, vb);
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count += 2;
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v3sub(tmpV12, vb, va);
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var dirFlag = v3dot(tmpV12, up) > 0;
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var linkRadius = radius(edgeIndex);
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@@ -181,7 +187,18 @@ export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
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addCylinder(builderState, va, vb, 0.5, cylinderProps);
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}
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}
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var oldBoundingSphere = mesh ? Sphere3D.clone(mesh.boundingSphere) : undefined;
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var m = MeshBuilder.getMesh(builderState);
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if (count === 0)
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return { mesh: m };
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// re-use boundingSphere if it has not changed much
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Vec3.scale(center, center, 1 / count);
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if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
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return { mesh: m, boundingSphere: oldBoundingSphere };
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}
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else {
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return { mesh: m };
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}
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}
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/**
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* Each edge is included twice to allow for coloring/picking
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@@ -190,7 +207,7 @@ export function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
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export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders) {
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var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, radius = linkBuilder.radius, ignore = linkBuilder.ignore, stub = linkBuilder.stub;
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if (!linkCount)
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return Cylinders.createEmpty(cylinders);
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return { cylinders: Cylinders.createEmpty(cylinders) };
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var linkScale = props.linkScale, linkSpacing = props.linkSpacing, linkCap = props.linkCap, aromaticScale = props.aromaticScale, aromaticSpacing = props.aromaticSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount, dashScale = props.dashScale, dashCap = props.dashCap, stubCap = props.stubCap;
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var cylindersCountEstimate = linkCount * 2;
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var builder = CylindersBuilder.create(cylindersCountEstimate, cylindersCountEstimate / 4, cylinders);
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@@ -198,6 +215,8 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
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var vb = Vec3();
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var vm = Vec3();
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var vShift = Vec3();
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var center = Vec3();
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var count = 0;
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// automatically adjust length for evenly spaced dashed cylinders
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var segmentCount = dashCount % 2 === 1 ? dashCount : dashCount + 1;
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var lengthScale = 0.5 - (0.5 / 2 / segmentCount);
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@@ -207,6 +226,9 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
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if (ignore && ignore(edgeIndex))
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continue;
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position(va, vb, edgeIndex);
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v3add(center, center, va);
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v3add(center, center, vb);
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count += 2;
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var linkRadius = radius(edgeIndex);
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var linkStyle = style ? style(edgeIndex) : 0 /* Solid */;
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var linkStub = stubCap && (stub ? stub(edgeIndex) : false);
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@@ -269,7 +291,18 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
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builder.add(va[0], va[1], va[2], vb[0], vb[1], vb[2], 1, linkCap, linkStub, edgeIndex);
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}
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}
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-
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var oldBoundingSphere = cylinders ? Sphere3D.clone(cylinders.boundingSphere) : undefined;
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var c = builder.getCylinders();
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if (count === 0)
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return { cylinders: c };
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// re-use boundingSphere if it has not changed much
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Vec3.scale(center, center, 1 / count);
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if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
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return { cylinders: c, boundingSphere: oldBoundingSphere };
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}
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else {
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return { cylinders: c };
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}
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}
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/**
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* Each edge is included twice to allow for coloring/picking
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@@ -278,7 +311,7 @@ export function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders)
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export function createLinkLines(ctx, linkBuilder, props, lines) {
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var linkCount = linkBuilder.linkCount, referencePosition = linkBuilder.referencePosition, position = linkBuilder.position, style = linkBuilder.style, ignore = linkBuilder.ignore;
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if (!linkCount)
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return Lines.createEmpty(lines);
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return { lines: Lines.createEmpty(lines) };
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var linkScale = props.linkScale, linkSpacing = props.linkSpacing, aromaticDashCount = props.aromaticDashCount, dashCount = props.dashCount;
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var linesCountEstimate = linkCount * 2;
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var builder = LinesBuilder.create(linesCountEstimate, linesCountEstimate / 4, lines);
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@@ -286,6 +319,8 @@ export function createLinkLines(ctx, linkBuilder, props, lines) {
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var vb = Vec3();
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var vm = Vec3();
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var vShift = Vec3();
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var center = Vec3();
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var count = 0;
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// automatically adjust length for evenly spaced dashed lines
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var segmentCount = dashCount % 2 === 1 ? dashCount : dashCount + 1;
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var lengthScale = 0.5 - (0.5 / 2 / segmentCount);
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@@ -297,6 +332,9 @@ export function createLinkLines(ctx, linkBuilder, props, lines) {
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if (ignore && ignore(edgeIndex))
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continue;
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position(va, vb, edgeIndex);
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v3add(center, center, va);
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v3add(center, center, vb);
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count += 2;
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var linkStyle = style ? style(edgeIndex) : 0 /* Solid */;
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if (linkStyle === 0 /* Solid */) {
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v3scale(vm, v3add(vm, va, vb), 0.5);
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@@ -354,6 +392,16 @@ export function createLinkLines(ctx, linkBuilder, props, lines) {
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builder.add(va[0], va[1], va[2], vb[0], vb[1], vb[2], edgeIndex);
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}
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}
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-
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var oldBoundingSphere = lines ? Sphere3D.clone(lines.boundingSphere) : undefined;
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var l = builder.getLines();
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|
397
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+
if (count === 0)
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+
return { lines: l };
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399
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+
// re-use boundingSphere if it has not changed much
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|
400
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+
Vec3.scale(center, center, 1 / count);
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401
|
+
if (oldBoundingSphere && Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
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return { lines: l, boundingSphere: oldBoundingSphere };
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403
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+
}
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404
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+
else {
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+
return { lines: l };
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+
}
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}
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-
//# sourceMappingURL=link.js.map
|
package/lib/mol-repr/util.js
CHANGED
package/lib/mol-repr/visual.js
CHANGED
package/lib/mol-script/script.js
CHANGED
package/lib/mol-state/action.js
CHANGED
package/lib/mol-state/index.js
CHANGED
package/lib/mol-state/object.js
CHANGED
package/lib/mol-state/state.js
CHANGED
package/lib/mol-state/tree.js
CHANGED
package/lib/mol-task/index.js
CHANGED
|
@@ -10,4 +10,3 @@ import { Scheduler } from './util/scheduler';
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|
|
10
10
|
import { MultistepTask } from './util/multistep';
|
|
11
11
|
import { chunkedSubtask } from './util/chunked';
|
|
12
12
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export { Task, RuntimeContext, Progress, Scheduler, MultistepTask, chunkedSubtask };
|
|
13
|
-
//# sourceMappingURL=index.js.map
|
package/lib/mol-task/task.js
CHANGED
|
@@ -63,4 +63,3 @@ export var ModelIndexColorThemeProvider = {
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|
|
63
63
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defaultValues: PD.getDefaultValues(ModelIndexColorThemeParams),
|
|
64
64
|
isApplicable: function (ctx) { return !!ctx.structure && ctx.structure.elementCount > 0 && Model.TrajectoryInfo.get(ctx.structure.models[0]).size > 1; }
|
|
65
65
|
};
|
|
66
|
-
//# sourceMappingURL=model-index.js.map
|