npm - molstar - Versions diffs - 3.1.0 → 3.3.1 - Mend

molstar 3.1.0 → 3.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (2315) hide show

package/lib/apps/docking-viewer/index.js CHANGED Viewed

@@ -244,4 +244,3 @@ var MergeStructures = PluginStateTransform.BuiltIn({
     }
 });
 window.DockingViewer = Viewer;
-//# sourceMappingURL=index.js.map

package/lib/apps/docking-viewer/viewport.js CHANGED Viewed

@@ -31,10 +31,11 @@ function occlusionStyle(plugin) {
     return PluginCommands.Canvas3D.SetSettings(plugin, { settings: {
             renderer: __assign({}, plugin.canvas3d.props.renderer),
             postprocessing: __assign(__assign({}, plugin.canvas3d.props.postprocessing), { occlusion: { name: 'on', params: {
-                        samples: 64,
-                        radius: 8,
-                        bias: 1.0,
-                        blurKernelSize: 13
+                        bias: 0.8,
+                        blurKernelSize: 15,
+                        radius: 5,
+                        samples: 32,
+                        resolutionScale: 1
                     } }, outline: { name: 'on', params: {
                         scale: 1.0,
                         threshold: 0.33,
@@ -320,4 +321,3 @@ var ViewportComponent = /** @class */ (function (_super) {
     return ViewportComponent;
 }(PluginUIComponent));
 export { ViewportComponent };
-//# sourceMappingURL=viewport.js.map

package/lib/apps/viewer/app.js CHANGED Viewed

@@ -525,4 +525,3 @@ export var ViewerAutoPreset = StructureRepresentationPresetProvider({
         });
     }
 });
-//# sourceMappingURL=app.js.map

package/lib/apps/viewer/index.js CHANGED Viewed

@@ -9,4 +9,3 @@ import './favicon.ico';
 import './index.html';
 require('mol-plugin-ui/skin/light.scss');
 export * from './app';
-//# sourceMappingURL=index.js.map

package/lib/cli/chem-comp-dict/create-ions.js CHANGED Viewed

@@ -63,4 +63,3 @@ parser.add_argument('--forceDownload', '-f', {
 });
 var args = parser.parse_args();
 run(args.out, args.forceDownload);
-//# sourceMappingURL=create-ions.js.map

package/lib/cli/chem-comp-dict/create-table.js CHANGED Viewed

@@ -277,4 +277,3 @@ parser.add_argument('--ccaOut', '-a', {
 });
 var args = parser.parse_args();
 run(args.out, args.binary, args.forceDownload, args.ccaOut);
-//# sourceMappingURL=create-table.js.map

package/lib/cli/chem-comp-dict/util.js CHANGED Viewed

@@ -132,4 +132,3 @@ var CCD_PATH = path.join(DATA_DIR, 'components.cif');
 var PVCD_PATH = path.join(DATA_DIR, 'aa-variants-v1.cif');
 var CCD_URL = 'http://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif';
 var PVCD_URL = 'http://ftp.wwpdb.org/pub/pdb/data/monomers/aa-variants-v1.cif';
-//# sourceMappingURL=util.js.map

package/lib/cli/cif2bcif/converter.js CHANGED Viewed

@@ -180,4 +180,3 @@ export function convert(path, asText, hints, filter) {
         });
     }); }).run(showProgress, 250);
 }
-//# sourceMappingURL=converter.js.map

package/lib/cli/cif2bcif/index.js CHANGED Viewed

@@ -76,4 +76,3 @@ var args = parser.parse_args();
 if (args) {
     run(args);
 }
-//# sourceMappingURL=index.js.map

package/lib/cli/cifschema/index.js CHANGED Viewed

@@ -392,4 +392,3 @@ if (args.name) {
         });
     }
 }
-//# sourceMappingURL=index.js.map

package/lib/cli/cifschema/util/cif-dic.js CHANGED Viewed

@@ -448,4 +448,3 @@ export function generateSchema(frames, imports) {
     });
     return { tables: tables, aliases: aliases };
 }
-//# sourceMappingURL=cif-dic.js.map

package/lib/cli/cifschema/util/generate.js CHANGED Viewed

@@ -151,4 +151,3 @@ export function generate(name, info, schema, fields, moldataImportPath, addAlias
     }
     return "".concat(header(name, info, moldataImportPath), "\n\n").concat(getTypeShorthands(schema, fields), "\n\n").concat(codeLines.join('\n'), "\n").concat(footer(name));
 }
-//# sourceMappingURL=generate.js.map

package/lib/cli/cifschema/util/helper.js CHANGED Viewed

@@ -15,4 +15,3 @@ export function parseImportGet(s) {
         };
     });
 }
-//# sourceMappingURL=helper.js.map

package/lib/cli/cifschema/util/schema.js CHANGED Viewed

@@ -49,4 +49,3 @@ export function mergeFilters() {
     });
     return mergedFilter;
 }
-//# sourceMappingURL=schema.js.map

package/lib/cli/lipid-params/index.js CHANGED Viewed

@@ -99,4 +99,3 @@ var FORCE_DOWNLOAD = args.forceDownload;
 run(args.out || '').catch(function (e) {
     console.error(e);
 });
-//# sourceMappingURL=index.js.map

package/lib/cli/state-docs/index.js CHANGED Viewed

@@ -58,4 +58,3 @@ StringBuilder.write(builder, '----------------------------');
 StringBuilder.newline(builder);
 transformers.forEach(function (t) { return writeTransformer(t); });
 fs.writeFileSync("docs/state/transforms.md", StringBuilder.getString(builder));
-//# sourceMappingURL=index.js.map

package/lib/cli/state-docs/pd-to-md.js CHANGED Viewed

@@ -73,4 +73,3 @@ function getParams(params, offset) {
     }
     return ret;
 }
-//# sourceMappingURL=pd-to-md.js.map

package/lib/cli/structure-info/helpers.js CHANGED Viewed

@@ -84,4 +84,3 @@ export function downloadCif(url, isBinary) {
         });
     });
 }
-//# sourceMappingURL=helpers.js.map

package/lib/cli/structure-info/model.js CHANGED Viewed

@@ -319,4 +319,3 @@ if (args.download)
     runDL(args.download, args);
 else if (args.file)
     runFile(args.file, args);
-//# sourceMappingURL=model.js.map

package/lib/cli/structure-info/volume.js CHANGED Viewed

@@ -110,4 +110,3 @@ parser.add_argument('--mesh', {
 });
 var args = parser.parse_args();
 run("https://ds.litemol.org/em/emd-".concat(args.emdb, "/cell?detail=4"), args.mesh);
-//# sourceMappingURL=volume.js.map

package/lib/commonjs/apps/docking-viewer/index.js CHANGED Viewed

@@ -250,4 +250,3 @@ var MergeStructures = objects_1.PluginStateTransform.BuiltIn({
     }
 });
 window.DockingViewer = Viewer;
-//# sourceMappingURL=index.js.map

package/lib/commonjs/apps/docking-viewer/viewport.js CHANGED Viewed

@@ -34,10 +34,11 @@ function occlusionStyle(plugin) {
     return commands_1.PluginCommands.Canvas3D.SetSettings(plugin, { settings: {
             renderer: (0, tslib_1.__assign)({}, plugin.canvas3d.props.renderer),
             postprocessing: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, plugin.canvas3d.props.postprocessing), { occlusion: { name: 'on', params: {
-                        samples: 64,
-                        radius: 8,
-                        bias: 1.0,
-                        blurKernelSize: 13
+                        bias: 0.8,
+                        blurKernelSize: 15,
+                        radius: 5,
+                        samples: 32,
+                        resolutionScale: 1
                     } }, outline: { name: 'on', params: {
                         scale: 1.0,
                         threshold: 0.33,
@@ -323,4 +324,3 @@ var ViewportComponent = /** @class */ (function (_super) {
     return ViewportComponent;
 }(base_1.PluginUIComponent));
 exports.ViewportComponent = ViewportComponent;
-//# sourceMappingURL=viewport.js.map

package/lib/commonjs/apps/viewer/app.js CHANGED Viewed

@@ -531,4 +531,3 @@ exports.ViewerAutoPreset = (0, representation_preset_1.StructureRepresentationPr
         });
     }
 });
-//# sourceMappingURL=app.js.map

package/lib/commonjs/apps/viewer/index.js CHANGED Viewed

@@ -12,4 +12,3 @@ require("./favicon.ico");
 require("./index.html");
 require('mol-plugin-ui/skin/light.scss');
 (0, tslib_1.__exportStar)(require("./app"), exports);
-//# sourceMappingURL=index.js.map

package/lib/commonjs/cli/chem-comp-dict/create-ions.js CHANGED Viewed

@@ -65,4 +65,3 @@ parser.add_argument('--forceDownload', '-f', {
 });
 var args = parser.parse_args();
 run(args.out, args.forceDownload);
-//# sourceMappingURL=create-ions.js.map

package/lib/commonjs/cli/chem-comp-dict/create-table.js CHANGED Viewed

@@ -279,4 +279,3 @@ parser.add_argument('--ccaOut', '-a', {
 });
 var args = parser.parse_args();
 run(args.out, args.binary, args.forceDownload, args.ccaOut);
-//# sourceMappingURL=create-table.js.map

package/lib/commonjs/cli/chem-comp-dict/util.js CHANGED Viewed

@@ -141,4 +141,3 @@ var CCD_PATH = path.join(DATA_DIR, 'components.cif');
 var PVCD_PATH = path.join(DATA_DIR, 'aa-variants-v1.cif');
 var CCD_URL = 'http://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif';
 var PVCD_URL = 'http://ftp.wwpdb.org/pub/pdb/data/monomers/aa-variants-v1.cif';
-//# sourceMappingURL=util.js.map

package/lib/commonjs/cli/cif2bcif/converter.js CHANGED Viewed

@@ -184,4 +184,3 @@ function convert(path, asText, hints, filter) {
     }); }).run(showProgress, 250);
 }
 exports.convert = convert;
-//# sourceMappingURL=converter.js.map

package/lib/commonjs/cli/cif2bcif/index.js CHANGED Viewed

@@ -78,4 +78,3 @@ var args = parser.parse_args();
 if (args) {
     run(args);
 }
-//# sourceMappingURL=index.js.map

package/lib/commonjs/cli/cifschema/index.js CHANGED Viewed

@@ -394,4 +394,3 @@ if (args.name) {
         });
     }
 }
-//# sourceMappingURL=index.js.map

package/lib/commonjs/cli/cifschema/util/cif-dic.js CHANGED Viewed

@@ -453,4 +453,3 @@ function generateSchema(frames, imports) {
     return { tables: tables, aliases: aliases };
 }
 exports.generateSchema = generateSchema;
-//# sourceMappingURL=cif-dic.js.map

package/lib/commonjs/cli/cifschema/util/generate.js CHANGED Viewed

@@ -155,4 +155,3 @@ function generate(name, info, schema, fields, moldataImportPath, addAliases) {
     return "".concat(header(name, info, moldataImportPath), "\n\n").concat(getTypeShorthands(schema, fields), "\n\n").concat(codeLines.join('\n'), "\n").concat(footer(name));
 }
 exports.generate = generate;
-//# sourceMappingURL=generate.js.map

package/lib/commonjs/cli/cifschema/util/helper.js CHANGED Viewed

@@ -19,4 +19,3 @@ function parseImportGet(s) {
     });
 }
 exports.parseImportGet = parseImportGet;
-//# sourceMappingURL=helper.js.map

package/lib/commonjs/cli/cifschema/util/schema.js CHANGED Viewed

@@ -61,4 +61,3 @@ function mergeFilters() {
     return mergedFilter;
 }
 exports.mergeFilters = mergeFilters;
-//# sourceMappingURL=schema.js.map

package/lib/commonjs/cli/lipid-params/index.js CHANGED Viewed

@@ -101,4 +101,3 @@ var FORCE_DOWNLOAD = args.forceDownload;
 run(args.out || '').catch(function (e) {
     console.error(e);
 });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/cli/state-docs/index.js CHANGED Viewed

@@ -61,4 +61,3 @@ mol_util_1.StringBuilder.write(builder, '----------------------------');
 mol_util_1.StringBuilder.newline(builder);
 transformers.forEach(function (t) { return writeTransformer(t); });
 fs.writeFileSync("docs/state/transforms.md", mol_util_1.StringBuilder.getString(builder));
-//# sourceMappingURL=index.js.map

package/lib/commonjs/cli/state-docs/pd-to-md.js CHANGED Viewed

@@ -77,4 +77,3 @@ function getParams(params, offset) {
     }
     return ret;
 }
-//# sourceMappingURL=pd-to-md.js.map

package/lib/commonjs/cli/structure-info/helpers.js CHANGED Viewed

@@ -89,4 +89,3 @@ function downloadCif(url, isBinary) {
     });
 }
 exports.downloadCif = downloadCif;
-//# sourceMappingURL=helpers.js.map

package/lib/commonjs/cli/structure-info/model.js CHANGED Viewed

@@ -333,4 +333,3 @@ if (args.download)
     runDL(args.download, args);
 else if (args.file)
     runFile(args.file, args);
-//# sourceMappingURL=model.js.map

package/lib/commonjs/cli/structure-info/volume.js CHANGED Viewed

@@ -112,4 +112,3 @@ parser.add_argument('--mesh', {
 });
 var args = parser.parse_args();
 run("https://ds.litemol.org/em/emd-".concat(args.emdb, "/cell?detail=4"), args.mesh);
-//# sourceMappingURL=volume.js.map

package/lib/commonjs/examples/alpha-orbitals/controls.js CHANGED Viewed

@@ -22,4 +22,3 @@ function Controls(_a) {
     var values = (0, use_behavior_1.useBehavior)(orbitals.state);
     return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: params, values: values, onChangeValues: function (vs) { return orbitals.state.next(vs); } }, void 0);
 }
-//# sourceMappingURL=controls.js.map

package/lib/commonjs/examples/alpha-orbitals/example-data.js CHANGED Viewed

@@ -60257,4 +60257,3 @@ exports.DemoOrbitals = {
         }
     ]
 };
-//# sourceMappingURL=example-data.js.map

package/lib/commonjs/examples/alpha-orbitals/index.js CHANGED Viewed

@@ -227,4 +227,3 @@ var AlphaOrbitalsExample = /** @class */ (function () {
 }());
 exports.AlphaOrbitalsExample = AlphaOrbitalsExample;
 window.AlphaOrbitalsExample = new AlphaOrbitalsExample();
-//# sourceMappingURL=index.js.map

package/lib/commonjs/examples/basic-wrapper/coloring.js CHANGED Viewed

@@ -28,4 +28,3 @@ exports.StripedResidues = custom_element_property_1.CustomElementProperty.create
         return e === 0 ? 'Odd stripe' : 'Even stripe';
     }
 });
-//# sourceMappingURL=coloring.js.map

package/lib/commonjs/examples/basic-wrapper/controls.js CHANGED Viewed

@@ -20,4 +20,3 @@ var CustomToastMessage = /** @class */ (function (_super) {
     return CustomToastMessage;
 }(base_1.PluginUIComponent));
 exports.CustomToastMessage = CustomToastMessage;
-//# sourceMappingURL=controls.js.map

package/lib/commonjs/examples/basic-wrapper/custom-theme.js CHANGED Viewed

@@ -46,4 +46,3 @@ exports.CustomColorThemeProvider = {
     defaultValues: {},
     isApplicable: function (ctx) { return true; },
 };
-//# sourceMappingURL=custom-theme.js.map

package/lib/commonjs/examples/basic-wrapper/index.js CHANGED Viewed

@@ -262,4 +262,3 @@ var BasicWrapper = /** @class */ (function () {
     return BasicWrapper;
 }());
 window.BasicMolStarWrapper = new BasicWrapper();
-//# sourceMappingURL=index.js.map

package/lib/commonjs/examples/basic-wrapper/superposition.js CHANGED Viewed

@@ -188,4 +188,3 @@ function transform(plugin, s, matrix) {
         .insert(transforms_1.StateTransforms.Model.TransformStructureConformation, { transform: { name: 'matrix', params: { data: matrix, transpose: false } } });
     return plugin.runTask(plugin.state.data.updateTree(b));
 }
-//# sourceMappingURL=superposition.js.map

package/lib/commonjs/examples/domain-annotation-server/mapping.js CHANGED Viewed

@@ -108,4 +108,3 @@ function getDomain(name, schema, allData) {
         mappings: db_1.Table.ofRows(S.mapping, mappings)
     } : void 0;
 }
-//# sourceMappingURL=mapping.js.map

package/lib/commonjs/examples/domain-annotation-server/schemas.js CHANGED Viewed

@@ -70,4 +70,3 @@ exports.categories = {
     SCOP: exports.SCOP,
     GO: exports.GO
 };
-//# sourceMappingURL=schemas.js.map

package/lib/commonjs/examples/domain-annotation-server/server.js CHANGED Viewed

@@ -62,4 +62,3 @@ app.get("".concat(PREFIX), function (req, res) {
 });
 app.listen(PORT);
 console.log('Running on port ' + PORT);
-//# sourceMappingURL=server.js.map

package/lib/commonjs/examples/domain-annotation-server/test.js CHANGED Viewed

@@ -25,4 +25,3 @@ var mapping_1 = require("./mapping");
         });
     });
 }());
-//# sourceMappingURL=test.js.map

package/lib/commonjs/examples/lighting/index.js CHANGED Viewed

@@ -17,7 +17,7 @@ var Canvas3DPresets = {
     illustrative: {
         canvas3d: {
             postprocessing: {
-                occlusion: { name: 'on', params: { samples: 32, radius: 6, bias: 1.4, blurKernelSize: 15 } },
+                occlusion: { name: 'on', params: { samples: 32, radius: 6, bias: 1.4, blurKernelSize: 15, resolutionScale: 1 } },
                 outline: { name: 'on', params: { scale: 1, threshold: 0.33, color: (0, color_1.Color)(0x000000) } }
             },
             renderer: {
@@ -29,7 +29,7 @@ var Canvas3DPresets = {
     occlusion: {
         canvas3d: {
             postprocessing: {
-                occlusion: { name: 'on', params: { samples: 32, radius: 6, bias: 1.4, blurKernelSize: 15 } },
+                occlusion: { name: 'on', params: { samples: 32, radius: 6, bias: 1.4, blurKernelSize: 15, resolutionScale: 1 } },
                 outline: { name: 'off', params: {} }
             },
             renderer: {
@@ -142,4 +142,3 @@ var LightingDemo = /** @class */ (function () {
     return LightingDemo;
 }());
 window.LightingDemo = new LightingDemo();
-//# sourceMappingURL=index.js.map

package/lib/commonjs/examples/proteopedia-wrapper/annotation.js CHANGED Viewed

@@ -85,4 +85,3 @@ exports.EvolutionaryConservation = custom_element_property_1.CustomElementProper
         return e ? "Evolutionary Conservation: ".concat(e) : void 0;
     }
 });
-//# sourceMappingURL=annotation.js.map

package/lib/commonjs/examples/proteopedia-wrapper/coloring.js CHANGED Viewed

@@ -94,4 +94,3 @@ function createProteopediaCustomTheme(colors) {
     };
 }
 exports.createProteopediaCustomTheme = createProteopediaCustomTheme;
-//# sourceMappingURL=coloring.js.map

package/lib/commonjs/examples/proteopedia-wrapper/helpers.js CHANGED Viewed

@@ -106,4 +106,3 @@ var StateElements;
     StateElements["HetGroupFocus"] = "het-group-focus";
     StateElements["HetGroupFocusGroup"] = "het-group-focus-group";
 })(StateElements = exports.StateElements || (exports.StateElements = {}));
-//# sourceMappingURL=helpers.js.map

package/lib/commonjs/examples/proteopedia-wrapper/index.js CHANGED Viewed

@@ -495,4 +495,3 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
     return MolStarProteopediaWrapper;
 }());
 window.MolStarProteopediaWrapper = MolStarProteopediaWrapper;
-//# sourceMappingURL=index.js.map

package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js CHANGED Viewed

@@ -16,4 +16,3 @@ function volumeStreamingControls(plugin, parent) {
     ReactDOM.render((0, jsx_runtime_1.jsx)(plugin_1.PluginContextContainer, (0, tslib_1.__assign)({ plugin: plugin }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.TransformUpdaterControl, { nodeRef: helpers_1.StateElements.VolumeStreaming }, void 0) }), void 0), parent);
 }
 exports.volumeStreamingControls = volumeStreamingControls;
-//# sourceMappingURL=controls.js.map

package/lib/commonjs/examples/task.js CHANGED Viewed

@@ -218,4 +218,3 @@ function test() {
 }
 test();
 // testObs();
-//# sourceMappingURL=task.js.map

package/lib/commonjs/extensions/alpha-orbitals/collocation.js CHANGED Viewed

@@ -131,4 +131,3 @@ function getRadiusBox(grid, center, radius) {
     linear_algebra_1.Vec3.min(max, max, linear_algebra_1.Vec3.subScalar((0, linear_algebra_1.Vec3)(), grid.dimensions, 1));
     return [min, max];
 }
-//# sourceMappingURL=collocation.js.map

package/lib/commonjs/extensions/alpha-orbitals/data-model.js CHANGED Viewed

@@ -66,4 +66,3 @@ function createGrid(gridInfo, values, axisOrder) {
     return grid;
 }
 exports.createGrid = createGrid;
-//# sourceMappingURL=data-model.js.map

package/lib/commonjs/extensions/alpha-orbitals/density.js CHANGED Viewed

@@ -110,4 +110,3 @@ function computeDensityIsocontourValues(input, cumulativeThreshold) {
     };
 }
 exports.computeDensityIsocontourValues = computeDensityIsocontourValues;
-//# sourceMappingURL=density.js.map

package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js CHANGED Viewed

@@ -154,4 +154,3 @@ function createTextureData(grid, orbital) {
         tAlpha: { width: baseCount, height: 1, array: alpha },
     };
 }
-//# sourceMappingURL=compute.js.map

package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js CHANGED Viewed

@@ -8,4 +8,3 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.MAIN = exports.UTILS = void 0;
 exports.UTILS = "\nfloat L1(vec3 p, float a0, float a1, float a2) {\n    return a0 * p.z + a1 * p.x + a2 * p.y;\n}\n\nfloat L2(vec3 p, float a0, float a1, float a2, float a3, float a4) {\n    float x = p.x, y = p.y, z = p.z;\n    float xx = x * x, yy = y * y, zz = z * z;\n    return (\n        a0 * (-0.5 * xx - 0.5 * yy + zz) +\n        a1 * (1.7320508075688772 * x * z) +\n        a2 * (1.7320508075688772 * y * z) +\n        a3 * (0.8660254037844386 * xx - 0.8660254037844386 * yy) +\n        a4 * (1.7320508075688772 * x * y)\n    );\n}\n\nfloat L3(vec3 p, float a0, float a1, float a2, float a3, float a4, float a5, float a6) {\n    float x = p.x, y = p.y, z = p.z;\n    float xx = x * x, yy = y * y, zz = z * z;\n    float xxx = xx * x, yyy = yy * y, zzz = zz * z;\n    return (\n        a0 * (-1.5 * xx * z - 1.5 * yy * z + zzz) +\n        a1 * (-0.6123724356957945 * xxx - 0.6123724356957945 * x * yy + 2.449489742783178 * x * zz) +\n        a2 * (-0.6123724356957945 * xx * y - 0.6123724356957945 * yyy + 2.449489742783178 * y * zz) +\n        a3 * (1.9364916731037085 * xx * z - 1.9364916731037085 * yy * z) +\n        a4 * (3.872983346207417 * x * y * z) +\n        a5 * (0.7905694150420949 * xxx - 2.3717082451262845 * x * yy) +\n        a6 * (2.3717082451262845 * xx * y - 0.7905694150420949 * yyy)\n    );\n}\n\nfloat L4(vec3 p, float a0, float a1, float a2, float a3, float a4, float a5, float a6, float a7, float a8) {\n    float x = p.x, y = p.y, z = p.z;\n    float xx = x * x, yy = y * y, zz = z * z;\n    float xxx = xx * x, yyy = yy * y, zzz = zz * z;\n    float xxxx = xxx * x, yyyy = yyy * y, zzzz = zzz * z;\n    return (\n        a0 * (0.375 * xxxx + 0.75 * xx * yy + 0.375 * yyyy - 3.0 * xx * zz - 3.0 * yy * zz + zzzz) +\n        a1 * (-2.3717082451262845 * xxx * z - 2.3717082451262845 * x * yy * z + 3.1622776601683795 * x * zzz) +\n        a2 * (-2.3717082451262845 * xx * y * z - 2.3717082451262845 * yyy * z + 3.1622776601683795 * y * zzz) +\n        a3 * (-0.5590169943749475 * xxxx + 0.5590169943749475 * yyyy + 3.3541019662496847 * xx * zz - 3.3541019662496847 * yy * zz) +\n        a4 * (-1.118033988749895 * xxx * y - 1.118033988749895 * x * yyy + 6.708203932499369 * x * y * zz) +\n        a5 * (2.091650066335189 * xxx * z + -6.274950199005566 * x * yy * z) +\n        a6 * (6.274950199005566 * xx * y * z + -2.091650066335189 * yyy * z) +\n        a7 * (0.739509972887452 * xxxx - 4.437059837324712 * xx * yy + 0.739509972887452 * yyyy) +\n        a8 * (2.958039891549808 * xxx * y + -2.958039891549808 * x * yyy)\n    );\n}\n\nfloat alpha(float offset, float f) {\n    #ifdef WEBGL1\n        // in webgl1, the value is in the alpha channel!\n        return texture2D(tAlpha, vec2(offset * f, 0.5)).a;\n    #else\n        return texture2D(tAlpha, vec2(offset * f, 0.5)).x;\n    #endif\n}\n\nfloat Y(int L, vec3 X, float aO, float fA) {\n    if (L == 0) {\n        return alpha(aO, fA);\n    } else if (L == 1) {\n        return L1(X,\n            alpha(aO, fA), alpha(aO + 1.0, fA), alpha(aO + 2.0, fA)\n        );\n    } else if (L == 2) {\n        return L2(X,\n            alpha(aO, fA), alpha(aO + 1.0, fA), alpha(aO + 2.0, fA), alpha(aO + 3.0, fA), alpha(aO + 4.0, fA)\n        );\n    } else if (L == 3) {\n        return L3(X,\n            alpha(aO, fA), alpha(aO + 1.0, fA), alpha(aO + 2.0, fA), alpha(aO + 3.0, fA), alpha(aO + 4.0, fA),\n            alpha(aO + 5.0, fA), alpha(aO + 6.0, fA)\n        );\n    } else if (L == 4) {\n        return L4(X,\n            alpha(aO, fA), alpha(aO + 1.0, fA), alpha(aO + 2.0, fA), alpha(aO + 3.0, fA), alpha(aO + 4.0, fA),\n            alpha(aO + 5.0, fA), alpha(aO + 6.0, fA), alpha(aO + 7.0, fA), alpha(aO + 8.0, fA)\n        );\n    }\n    // TODO: do we need L > 4?\n    return 0.0;\n}\n\n#ifndef WEBGL1\n    float R(float R2, int start, int end, float fCoeff) {\n        float gauss = 0.0;\n        for (int i = start; i < end; i++) {\n            vec2 c = texture2D(tCoeff, vec2(float(i) * fCoeff, 0.5)).xy;\n            gauss += c.x * exp(-c.y * R2);\n        }\n        return gauss;\n    }\n#else\n    float R(float R2, int start, int end, float fCoeff) {\n        float gauss = 0.0;\n        int o = start;\n        for (int i = 0; i < uMaxCoeffs; i++) {\n            if (o >= end) break;\n\n            vec2 c = texture2D(tCoeff, vec2(float(o) * fCoeff, 0.5)).xy;\n            gauss += c.x * exp(-c.y * R2);\n            o++;\n        }\n        return gauss;\n    }\n#endif\n";
 exports.MAIN = "\n    float fCenter = 1.0 / float(uNCenters - 1);\n    float fCoeff = 1.0 / float(uNCoeff - 1);\n    float fA = 1.0 / float(uNAlpha - 1);\n\n    float v = 0.0;\n\n    for (int i = 0; i < uNCenters; i++) {\n        vec2 cCoord = vec2(float(i) * fCenter, 0.5);\n\n        vec4 center = texture2D(tCenters, cCoord);\n        vec3 X = xyz - center.xyz;\n        float R2 = dot(X, X);\n\n        // center.w is squared cutoff radius\n        if (R2 > center.w) {\n            continue;\n        }\n\n        vec4 info = texture2D(tInfo, cCoord);\n\n        int L = int(info.x);\n        float aO = info.y;\n        int coeffStart = int(info.z);\n        int coeffEnd = int(info.w);\n\n        v += R(R2, coeffStart, coeffEnd, fCoeff) * Y(L, X, aO, fA);\n    }\n";
-//# sourceMappingURL=shader.frag.js.map

package/lib/commonjs/extensions/alpha-orbitals/orbitals.js CHANGED Viewed

@@ -118,4 +118,3 @@ function computeOrbitalIsocontourValues(input, cumulativeThreshold) {
     };
 }
 exports.computeOrbitalIsocontourValues = computeOrbitalIsocontourValues;
-//# sourceMappingURL=orbitals.js.map

package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js CHANGED Viewed

@@ -63,4 +63,3 @@ function L4(alpha, x, y, z) {
         alpha[7] * (0.739509972887452 * xxxx - 4.437059837324712 * xx * yy + 0.739509972887452 * yyyy) +
         alpha[8] * (2.958039891549808 * xxx * y + -2.958039891549808 * x * yyy));
 }
-//# sourceMappingURL=spherical-functions.js.map

package/lib/commonjs/extensions/alpha-orbitals/transforms.js CHANGED Viewed

@@ -258,4 +258,3 @@ function volumeParams(plugin, volume, params) {
         colorParams: { value: params.color }
     });
 }
-//# sourceMappingURL=transforms.js.map

package/lib/commonjs/extensions/anvil/algorithm.js CHANGED Viewed

@@ -575,4 +575,3 @@ function setLocation(l, structure, serialIndex) {
     l.element = structure.serialMapping.elementIndices[serialIndex];
     return l;
 }
-//# sourceMappingURL=algorithm.js.map

package/lib/commonjs/extensions/anvil/behavior.js CHANGED Viewed

@@ -206,4 +206,3 @@ function tryCreateMembraneOrientation(plugin, structure, params, initialState) {
     return membraneOrientation.commit({ revertOnError: true });
 }
 exports.tryCreateMembraneOrientation = tryCreateMembraneOrientation;
-//# sourceMappingURL=behavior.js.map

package/lib/commonjs/extensions/anvil/prop.js CHANGED Viewed

@@ -79,4 +79,3 @@ function computeAnvil(ctx, data, props) {
         });
     });
 }
-//# sourceMappingURL=prop.js.map

package/lib/commonjs/extensions/anvil/representation.js CHANGED Viewed

@@ -115,4 +115,3 @@ function getLayerPlane(state, p, centroid, radius) {
     mesh_builder_1.MeshBuilder.addPrimitive(state, linear_algebra_1.Mat4.id, circle);
     mesh_builder_1.MeshBuilder.addPrimitiveFlipped(state, linear_algebra_1.Mat4.id, circle);
 }
-//# sourceMappingURL=representation.js.map

package/lib/commonjs/extensions/cellpack/color/generate.js CHANGED Viewed

@@ -83,4 +83,3 @@ exports.CellPackGenerateColorThemeProvider = {
             !!property_1.CellPackInfoProvider.get(ctx.structure).value);
     }
 };
-//# sourceMappingURL=generate.js.map

package/lib/commonjs/extensions/cellpack/color/provided.js CHANGED Viewed

@@ -65,4 +65,3 @@ exports.CellPackProvidedColorThemeProvider = {
             !!((_a = property_1.CellPackInfoProvider.get(ctx.structure).value) === null || _a === void 0 ? void 0 : _a.colors));
     }
 };
-//# sourceMappingURL=provided.js.map

package/lib/commonjs/extensions/cellpack/curve.js CHANGED Viewed

@@ -200,4 +200,3 @@ function getMatFromResamplePoints(points, segmentLength, resample) {
     return transforms;
 }
 exports.getMatFromResamplePoints = getMatFromResamplePoints;
-//# sourceMappingURL=curve.js.map

package/lib/commonjs/extensions/cellpack/data.js CHANGED Viewed

@@ -5,4 +5,3 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-//# sourceMappingURL=data.js.map

package/lib/commonjs/extensions/cellpack/index.js CHANGED Viewed

@@ -36,4 +36,3 @@ exports.CellPack = behavior_1.PluginBehavior.create({
         return class_1;
     }(behavior_1.PluginBehavior.Handler))
 });
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/cellpack/model.js CHANGED Viewed

@@ -900,4 +900,3 @@ exports.LoadCellPackModel = mol_state_1.StateAction.build({
         });
     }); });
 });
-//# sourceMappingURL=model.js.map

package/lib/commonjs/extensions/cellpack/preset.js CHANGED Viewed

@@ -106,4 +106,3 @@ exports.CellpackMembranePreset = (0, representation_preset_1.StructureRepresenta
         });
     }
 });
-//# sourceMappingURL=preset.js.map

package/lib/commonjs/extensions/cellpack/property.js CHANGED Viewed

@@ -28,4 +28,3 @@ exports.CellPackInfoProvider = custom_structure_property_1.CustomStructureProper
         });
     }); }
 });
-//# sourceMappingURL=property.js.map

package/lib/commonjs/extensions/cellpack/representation.js CHANGED Viewed

@@ -44,4 +44,3 @@ function MBRepresentation(ctx, getParams) {
     return representation_2.Representation.createMulti('MB', ctx, getParams, representation_2.Representation.StateBuilder, MembraneSphereVisuals);
 }
 exports.MBRepresentation = MBRepresentation;
-//# sourceMappingURL=representation.js.map

package/lib/commonjs/extensions/cellpack/state.js CHANGED Viewed

@@ -394,4 +394,3 @@ exports.CreateCompartmentSphere = CreateTransformer({
         }); });
     }
 });
-//# sourceMappingURL=state.js.map

package/lib/commonjs/extensions/cellpack/util.js CHANGED Viewed

@@ -178,4 +178,3 @@ function getFloatValue(value, offset) {
     return mantissa * Math.pow(10, exponent);
 }
 exports.getFloatValue = getFloatValue;
-//# sourceMappingURL=util.js.map

package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js CHANGED Viewed

@@ -118,4 +118,3 @@ exports.DnatcoConfalPyramids = behavior_1.PluginBehavior.create({
         showToolTip: param_definition_1.ParamDefinition.Boolean(true)
     }); }
 });
-//# sourceMappingURL=behavior.js.map

package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js CHANGED Viewed

@@ -175,4 +175,3 @@ exports.ConfalPyramidsColorThemeProvider = {
         detach: function (data) { return data.structure && property_1.ConfalPyramidsProvider.ref(data.structure.models[0], false); }
     }
 };
-//# sourceMappingURL=color.js.map

package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js CHANGED Viewed

@@ -157,4 +157,3 @@ function getNtCAndConfalScore(id, i, stepsSummary) {
     }
     throw new Error('Inconsistent mmCIF data');
 }
-//# sourceMappingURL=property.js.map

package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js CHANGED Viewed

@@ -156,4 +156,3 @@ exports.ConfalPyramidsRepresentationProvider = (0, representation_2.StructureRep
         detach: function (data) { return property_1.ConfalPyramidsProvider.ref(data.model, false); },
     }
 });
-//# sourceMappingURL=representation.js.map

package/lib/commonjs/extensions/dnatco/confal-pyramids/types.js CHANGED Viewed

@@ -24,4 +24,3 @@ var ConfalPyramidsTypes;
     }
     ConfalPyramidsTypes.toElementLocation = toElementLocation;
 })(ConfalPyramidsTypes = exports.ConfalPyramidsTypes || (exports.ConfalPyramidsTypes = {}));
-//# sourceMappingURL=types.js.map