molstar 3.0.0-dev.3 → 3.0.0-dev.4

package/lib/mol-repr/volume/isosurface.d.ts

@@ -93,10 +93,13 @@ export declare function IsosurfaceVisual(materialId: number, volume: Volume, pro
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    bumpFrequency: PD.Numeric;
+    bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 }>;
 export declare function eachIsosurface(loci: Loci, volume: Volume, props: VolumeIsosurfaceProps, apply: (interval: Interval) => boolean): boolean;
@@ -153,10 +156,13 @@ export declare const IsosurfaceMeshParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    bumpFrequency: PD.Numeric;
+    bumpAmplitude: PD.Numeric;
     alpha: PD.Numeric;
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 };
 export declare type IsosurfaceMeshParams = typeof IsosurfaceMeshParams;
@@ -215,12 +221,14 @@ export declare const IsosurfaceWireframeParams: {
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 };
 export declare type IsosurfaceWireframeParams = typeof IsosurfaceWireframeParams;
 export declare function IsosurfaceWireframeVisual(materialId: number): VolumeVisual<IsosurfaceWireframeParams>;
 export declare const IsosurfaceParams: {
     visuals: PD.MultiSelect<"solid" | "wireframe">;
+    bumpFrequency: PD.Numeric;
     quality: {
         isEssential: boolean;
         type: "select";
@@ -272,6 +280,7 @@ export declare const IsosurfaceParams: {
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
     tryUseGpu: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
@@ -279,10 +288,12 @@ export declare const IsosurfaceParams: {
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    bumpAmplitude: PD.Numeric;
 };
 export declare type IsosurfaceParams = typeof IsosurfaceParams;
 export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: Volume): {
     visuals: PD.MultiSelect<"solid" | "wireframe">;
+    bumpFrequency: PD.Numeric;
     quality: {
         isEssential: boolean;
         type: "select";
@@ -334,6 +345,7 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
     tryUseGpu: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
@@ -341,11 +353,13 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    bumpAmplitude: PD.Numeric;
 };
 export declare type IsosurfaceRepresentation = VolumeRepresentation<IsosurfaceParams>;
 export declare function IsosurfaceRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Volume, IsosurfaceParams>): IsosurfaceRepresentation;
 export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvider<{
     visuals: PD.MultiSelect<"solid" | "wireframe">;
+    bumpFrequency: PD.Numeric;
     quality: {
         isEssential: boolean;
         type: "select";
@@ -397,6 +411,7 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
     tryUseGpu: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
@@ -404,4 +419,5 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
+    bumpAmplitude: PD.Numeric;
 }, "isosurface">;

package/lib/mol-repr/volume/isosurface.js

@@ -22,6 +22,7 @@ import { createVolumeTexture2d, eachVolumeLoci, getVolumeTexture2dLayout } from
 import { TextureMesh } from '../../mol-geo/geometry/texture-mesh/texture-mesh';
 import { extractIsosurface } from '../../mol-gl/compute/marching-cubes/isosurface';
 import { CustomPropertyDescriptor } from '../../mol-model/custom-property';
+import { BaseGeometry } from '../../mol-geo/geometry/base';
 export var VolumeIsosurfaceParams = {
     isoValue: Volume.IsoValueParam
 };
@@ -222,7 +223,7 @@ var IsosurfaceVisuals = {
     'solid': function (ctx, getParams) { return VolumeRepresentation('Isosurface mesh', ctx, getParams, IsosurfaceVisual, getLoci); },
     'wireframe': function (ctx, getParams) { return VolumeRepresentation('Isosurface wireframe', ctx, getParams, IsosurfaceWireframeVisual, getLoci); },
 };
-export var IsosurfaceParams = __assign(__assign(__assign({}, IsosurfaceMeshParams), IsosurfaceWireframeParams), { visuals: PD.MultiSelect(['solid'], PD.objectToOptions(IsosurfaceVisuals)) });
+export var IsosurfaceParams = __assign(__assign(__assign({}, IsosurfaceMeshParams), IsosurfaceWireframeParams), { visuals: PD.MultiSelect(['solid'], PD.objectToOptions(IsosurfaceVisuals)), bumpFrequency: PD.Numeric(1, { min: 0, max: 10, step: 0.1 }, BaseGeometry.ShadingCategory) });
 export function getIsosurfaceParams(ctx, volume) {
     var p = PD.clone(IsosurfaceParams);
     p.isoValue = Volume.createIsoValueParam(Volume.IsoValue.relative(2), volume.grid.stats);

package/lib/mol-repr/volume/registry.d.ts

@@ -12,6 +12,7 @@ export declare namespace VolumeRepresentationRegistry {
     export const BuiltIn: {
         isosurface: import("./representation").VolumeRepresentationProvider<{
             visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"solid" | "wireframe">;
+            bumpFrequency: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             quality: {
                 isEssential: boolean;
                 type: "select";
@@ -63,6 +64,7 @@ export declare namespace VolumeRepresentationRegistry {
             material: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 metalness: number;
                 roughness: number;
+                bumpiness: number;
             }>>;
             tryUseGpu: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -70,6 +72,7 @@ export declare namespace VolumeRepresentationRegistry {
             flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
+            bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
         }, "isosurface">;
         slice: import("./representation").VolumeRepresentationProvider<{
             quality: {
@@ -123,6 +126,7 @@ export declare namespace VolumeRepresentationRegistry {
             material: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 metalness: number;
                 roughness: number;
+                bumpiness: number;
             }>>;
         }, "slice">;
         'direct-volume': import("./representation").VolumeRepresentationProvider<{
@@ -176,6 +180,7 @@ export declare namespace VolumeRepresentationRegistry {
             material: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 metalness: number;
                 roughness: number;
+                bumpiness: number;
             }>>;
         }, "direct-volume">;
     };

package/lib/mol-repr/volume/representation.d.ts

@@ -41,6 +41,7 @@ export declare const VolumeParams: {
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 };
 export declare type VolumeParams = typeof VolumeParams;

package/lib/mol-repr/volume/slice.d.ts

@@ -63,6 +63,7 @@ export declare const SliceParams: {
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 };
 export declare type SliceParams = typeof SliceParams;
@@ -118,6 +119,7 @@ export declare function getSliceParams(ctx: ThemeRegistryContext, volume: Volume
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 };
 export declare function SliceVisual(materialId: number): VolumeVisual<SliceParams>;
@@ -174,5 +176,6 @@ export declare const SliceRepresentationProvider: VolumeRepresentationProvider<{
     material: PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 }, "slice">;

package/lib/mol-script/language/builder.d.ts

@@ -10,6 +10,7 @@ export declare namespace MolScriptBuilder {
         '@header': string;
         type: {
             '@header': string;
+            /** atom macromolecular property set */
             bool: MSymbol<import("./symbol").Arguments<import("./symbol").Arguments.PropTypes<{
                 0: import("./symbol").Argument<import("./type").Type.AnyValue>;
             }>>, import("./type").Type.OneOf<boolean>>;

package/lib/mol-theme/color/illustrative.d.ts

@@ -7,6 +7,7 @@ import { ColorTheme } from '../color';
 import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { ThemeDataContext } from '../theme';
 export declare const IllustrativeColorThemeParams: {
+    carbonLightness: PD.Numeric;
     palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
         maxCount: number;
         hue: [number, number];
@@ -24,6 +25,7 @@ export declare const IllustrativeColorThemeParams: {
 };
 export declare type IllustrativeColorThemeParams = typeof IllustrativeColorThemeParams;
 export declare function getIllustrativeColorThemeParams(ctx: ThemeDataContext): {
+    carbonLightness: PD.Numeric;
     palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
         maxCount: number;
         hue: [number, number];

package/lib/mol-theme/color/illustrative.js

@@ -10,7 +10,7 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { ChainIdColorTheme, ChainIdColorThemeParams } from './chain-id';
 var DefaultIllustrativeColor = Color(0xEEEEEE);
 var Description = "Assigns an illustrative color that gives every chain a unique color with lighter carbons (inspired by David Goodsell's Molecule of the Month style).";
-export var IllustrativeColorThemeParams = __assign({}, ChainIdColorThemeParams);
+export var IllustrativeColorThemeParams = __assign(__assign({}, ChainIdColorThemeParams), { carbonLightness: PD.Numeric(0.8, { min: -6, max: 6, step: 0.1 }) });
 export function getIllustrativeColorThemeParams(ctx) {
     return IllustrativeColorThemeParams; // TODO return copy
 }
@@ -18,7 +18,7 @@ export function IllustrativeColorTheme(ctx, props) {
     var _a = ChainIdColorTheme(ctx, props), chainIdColor = _a.color, legend = _a.legend;
     function illustrativeColor(location, typeSymbol) {
         var baseColor = chainIdColor(location, false);
-        return typeSymbol === 'C' ? Color.lighten(baseColor, 0.8) : baseColor;
+        return typeSymbol === 'C' ? Color.lighten(baseColor, props.carbonLightness) : baseColor;
     }
     function color(location) {
         if (StructureElement.Location.is(location) && Unit.isAtomic(location.unit)) {

package/lib/mol-theme/color.d.ts

@@ -164,6 +164,7 @@ declare namespace ColorTheme {
             scale: PD.Select<"DGwif" | "DGwoct" | "Oct-IF">;
         }, "hydrophobicity">;
         illustrative: Provider<{
+            carbonLightness: PD.Numeric;
             palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
                 maxCount: number;
                 hue: [number, number];

package/lib/mol-util/material.d.ts

@@ -10,20 +10,24 @@ export interface Material {
     metalness: number;
     /** Normalized to [0, 1] range */
     roughness: number;
+    /** Normalized to [0, 1] range */
+    bumpiness: number;
 }
 export declare function Material(values?: Partial<Material>): {
     metalness: number;
     roughness: number;
+    bumpiness: number;
 };
 export declare namespace Material {
     const Zero: Material;
     function toArray(material: Material, array: NumberArray, offset: number): NumberArray;
-    function toString({ metalness, roughness }: Material): string;
+    function toString({ metalness, roughness, bumpiness }: Material): string;
     function getParam(info?: {
         isExpanded?: boolean;
         isFlat?: boolean;
     }): PD.Group<PD.Normalize<{
         metalness: number;
         roughness: number;
+        bumpiness: number;
     }>>;
 }

package/lib/mol-util/material.js

@@ -9,27 +9,29 @@ export function Material(values) {
     return __assign(__assign({}, Material.Zero), values);
 }
 (function (Material) {
-    Material.Zero = { metalness: 0, roughness: 0 };
+    Material.Zero = { metalness: 0, roughness: 0, bumpiness: 0 };
     function toArray(material, array, offset) {
         array[offset] = material.metalness * 255;
         array[offset + 1] = material.roughness * 255;
+        array[offset + 2] = material.bumpiness * 255;
         return array;
     }
     Material.toArray = toArray;
     function toString(_a) {
-        var metalness = _a.metalness, roughness = _a.roughness;
-        return "M ".concat(metalness.toFixed(2), " | R ").concat(roughness.toFixed(2));
+        var metalness = _a.metalness, roughness = _a.roughness, bumpiness = _a.bumpiness;
+        return "M ".concat(metalness.toFixed(2), " | R ").concat(roughness.toFixed(2), " | B ").concat(bumpiness.toFixed(2));
     }
     Material.toString = toString;
     function getParam(info) {
         return PD.Group({
             metalness: PD.Numeric(0, { min: 0, max: 1, step: 0.01 }),
             roughness: PD.Numeric(1, { min: 0, max: 1, step: 0.01 }),
+            bumpiness: PD.Numeric(0, { min: 0, max: 1, step: 0.01 }),
         }, __assign(__assign({}, info), { presets: [
-                [{ metalness: 0, roughness: 1 }, 'Matte'],
-                [{ metalness: 0, roughness: 0.2 }, 'Plastic'],
-                [{ metalness: 0, roughness: 0.6 }, 'Glossy'],
-                [{ metalness: 1.0, roughness: 0.6 }, 'Metallic'],
+                [{ metalness: 0, roughness: 1, bumpiness: 0 }, 'Matte'],
+                [{ metalness: 0, roughness: 0.2, bumpiness: 0 }, 'Plastic'],
+                [{ metalness: 0, roughness: 0.6, bumpiness: 0 }, 'Glossy'],
+                [{ metalness: 1.0, roughness: 0.6, bumpiness: 0 }, 'Metallic'],
             ] }));
     }
     Material.getParam = getParam;

package/package.json

@@ -1,160 +1,162 @@
-{
-  "name": "molstar",
-  "version": "3.0.0-dev.3",
-  "description": "A comprehensive macromolecular library.",
-  "homepage": "https://github.com/molstar/molstar#readme",
-  "repository": {
-    "type": "git",
-    "url": "https://github.com/molstar/molstar.git"
-  },
-  "bugs": {
-    "url": "https://github.com/molstar/molstar/issues"
-  },
-  "scripts": {
-    "lint": "eslint .",
-    "lint-fix": "eslint . --fix",
-    "test": "npm run lint && jest",
-    "jest": "jest",
-    "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
-    "clean": "node ./scripts/clean.js",
-    "rebuild": "npm run clean && npm run build",
-    "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
-    "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
-    "build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
-    "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
-    "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
-    "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
-    "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
-    "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
-    "watch-tsc": "tsc --watch --incremental",
-    "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
-    "watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
-    "watch-webpack": "webpack -w --mode development --stats minimal",
-    "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
-    "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
-    "serve": "http-server -p 1338 -g",
-    "model-server": "node lib/commonjs/servers/model/server.js",
-    "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
-    "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
-    "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
-    "preversion": "npm run test",
-    "version": "npm run rebuild && cpx .npmignore lib/",
-    "postversion": "git push && git push --tags"
-  },
-  "files": [
-    "lib/",
-    "build/viewer/"
-  ],
-  "bin": {
-    "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
-    "cifschema": "lib/commonjs/cli/cifschema/index.js",
-    "model-server": "lib/commonjs/servers/model/server.js",
-    "model-server-query": "lib/commonjs/servers/model/query.js",
-    "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
-    "volume-server": "lib/commonjs/servers/volume/server.js",
-    "volume-server-query": "lib/commonjs/servers/volume/query.js",
-    "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
-  },
-  "nodemonConfig": {
-    "ignoreRoot": [
-      "./node_modules",
-      ".git"
-    ],
-    "ignore": [],
-    "delay": "2500"
-  },
-  "jest": {
-    "moduleFileExtensions": [
-      "ts",
-      "js"
-    ],
-    "transform": {
-      "\\.ts$": "ts-jest"
-    },
-    "moduleDirectories": [
-      "node_modules",
-      "lib"
-    ],
-    "testURL": "http://localhost/",
-    "testRegex": "\\.spec\\.ts$"
-  },
-  "author": "Mol* Contributors",
-  "contributors": [
-    "Alexander Rose <alexander.rose@weirdbyte.de>",
-    "David Sehnal <david.sehnal@gmail.com>",
-    "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
-    "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
-    "Ludovic Autin <autin@scripps.edu>",
-    "Michal Malý <michal.maly@ibt.cas.cz>",
-    "Jiří Černý <jiri.cerny@ibt.cas.cz>"
-  ],
-  "license": "MIT",
-  "devDependencies": {
-    "@graphql-codegen/add": "^3.1.0",
-    "@graphql-codegen/cli": "^2.3.0",
-    "@graphql-codegen/time": "^3.1.0",
-    "@graphql-codegen/typescript": "^2.4.1",
-    "@graphql-codegen/typescript-graphql-files-modules": "^2.1.0",
-    "@graphql-codegen/typescript-graphql-request": "^4.3.1",
-    "@graphql-codegen/typescript-operations": "^2.2.1",
-    "@types/cors": "^2.8.12",
-    "@types/gl": "^4.1.0",
-    "@types/jest": "^27.0.3",
-    "@typescript-eslint/eslint-plugin": "^5.5.0",
-    "@typescript-eslint/parser": "^5.5.0",
-    "benchmark": "^2.1.4",
-    "concurrently": "^6.4.0",
-    "cpx2": "^4.0.0",
-    "crypto-browserify": "^3.12.0",
-    "css-loader": "^6.5.1",
-    "eslint": "^8.3.0",
-    "extra-watch-webpack-plugin": "^1.0.3",
-    "file-loader": "^6.2.0",
-    "fs-extra": "^10.0.0",
-    "graphql": "^15.7.2",
-    "http-server": "^14.0.0",
-    "jest": "^27.3.1",
-    "mini-css-extract-plugin": "^2.4.5",
-    "path-browserify": "^1.0.1",
-    "raw-loader": "^4.0.2",
-    "sass": "^1.43.5",
-    "sass-loader": "^12.3.0",
-    "simple-git": "^2.47.0",
-    "stream-browserify": "^3.0.0",
-    "style-loader": "^3.3.1",
-    "ts-jest": "^27.0.7",
-    "typescript": "^4.5.2",
-    "webpack": "^5.64.4",
-    "webpack-cli": "^4.9.1"
-  },
-  "dependencies": {
-    "@types/argparse": "^2.0.10",
-    "@types/benchmark": "^2.1.1",
-    "@types/compression": "1.7.2",
-    "@types/express": "^4.17.13",
-    "@types/node": "^16.11.10",
-    "@types/node-fetch": "^2.5.12",
-    "@types/react": "^17.0.37",
-    "@types/react-dom": "^17.0.11",
-    "@types/swagger-ui-dist": "3.30.1",
-    "argparse": "^2.0.1",
-    "body-parser": "^1.19.0",
-    "compression": "^1.7.4",
-    "cors": "^2.8.5",
-    "express": "^4.17.1",
-    "h264-mp4-encoder": "^1.0.12",
-    "immer": "^9.0.7",
-    "immutable": "^3.8.2",
-    "node-fetch": "^2.6.2",
-    "react": "^17.0.2",
-    "react-dom": "^17.0.2",
-    "rxjs": "^7.4.0",
-    "swagger-ui-dist": "^4.1.1",
-    "tslib": "^2.3.1",
-    "util.promisify": "^1.1.1",
-    "xhr2": "^0.2.1"
-  },
-  "optionalDependencies": {
-    "gl": "^4.9.2"
-  }
-}
+{
+  "name": "molstar",
+  "version": "3.0.0-dev.4",
+  "description": "A comprehensive macromolecular library.",
+  "homepage": "https://github.com/molstar/molstar#readme",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/molstar/molstar.git"
+  },
+  "bugs": {
+    "url": "https://github.com/molstar/molstar/issues"
+  },
+  "scripts": {
+    "lint": "eslint .",
+    "lint-fix": "eslint . --fix",
+    "test": "npm run lint && jest",
+    "jest": "jest",
+    "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
+    "clean": "node ./scripts/clean.js",
+    "rebuild": "npm run clean && npm run build",
+    "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
+    "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
+    "build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
+    "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
+    "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
+    "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
+    "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
+    "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
+    "watch-tsc": "tsc --watch --incremental",
+    "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
+    "watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
+    "watch-webpack": "webpack -w --mode development --stats minimal",
+    "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
+    "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
+    "serve": "http-server -p 1338 -g",
+    "model-server": "node lib/commonjs/servers/model/server.js",
+    "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
+    "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
+    "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
+    "preversion": "npm run test",
+    "version": "npm run rebuild && cpx .npmignore lib/",
+    "postversion": "git push && git push --tags"
+  },
+  "files": [
+    "lib/",
+    "build/viewer/"
+  ],
+  "bin": {
+    "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
+    "cifschema": "lib/commonjs/cli/cifschema/index.js",
+    "model-server": "lib/commonjs/servers/model/server.js",
+    "model-server-query": "lib/commonjs/servers/model/query.js",
+    "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
+    "volume-server": "lib/commonjs/servers/volume/server.js",
+    "volume-server-query": "lib/commonjs/servers/volume/query.js",
+    "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
+  },
+  "nodemonConfig": {
+    "ignoreRoot": [
+      "./node_modules",
+      ".git"
+    ],
+    "ignore": [],
+    "delay": "2500"
+  },
+  "jest": {
+    "moduleFileExtensions": [
+      "ts",
+      "js"
+    ],
+    "transform": {
+      "\\.ts$": "ts-jest"
+    },
+    "moduleDirectories": [
+      "node_modules",
+      "lib"
+    ],
+    "testURL": "http://localhost/",
+    "testRegex": "\\.spec\\.ts$"
+  },
+  "author": "Mol* Contributors",
+  "contributors": [
+    "Alexander Rose <alexander.rose@weirdbyte.de>",
+    "David Sehnal <david.sehnal@gmail.com>",
+    "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
+    "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
+    "Ludovic Autin <autin@scripps.edu>",
+    "Michal Malý <michal.maly@ibt.cas.cz>",
+    "Jiří Černý <jiri.cerny@ibt.cas.cz>"
+  ],
+  "license": "MIT",
+  "devDependencies": {
+    "@graphql-codegen/add": "^3.1.0",
+    "@graphql-codegen/cli": "^2.3.0",
+    "@graphql-codegen/time": "^3.1.0",
+    "@graphql-codegen/typescript": "^2.4.1",
+    "@graphql-codegen/typescript-graphql-files-modules": "^2.1.0",
+    "@graphql-codegen/typescript-graphql-request": "^4.3.1",
+    "@graphql-codegen/typescript-operations": "^2.2.1",
+    "@types/cors": "^2.8.12",
+    "@types/gl": "^4.1.0",
+    "@types/jest": "^27.0.3",
+    "@typescript-eslint/eslint-plugin": "^5.5.0",
+    "@typescript-eslint/parser": "^5.5.0",
+    "benchmark": "^2.1.4",
+    "concurrently": "^6.4.0",
+    "cpx2": "^4.0.0",
+    "crypto-browserify": "^3.12.0",
+    "css-loader": "^6.5.1",
+    "eslint": "^8.3.0",
+    "extra-watch-webpack-plugin": "^1.0.3",
+    "file-loader": "^6.2.0",
+    "fs-extra": "^10.0.0",
+    "graphql": "^15.7.2",
+    "http-server": "^14.0.0",
+    "jest": "^27.3.1",
+    "mini-css-extract-plugin": "^2.4.5",
+    "path-browserify": "^1.0.1",
+    "raw-loader": "^4.0.2",
+    "sass": "^1.43.5",
+    "sass-loader": "^12.3.0",
+    "simple-git": "^2.47.0",
+    "stream-browserify": "^3.0.0",
+    "style-loader": "^3.3.1",
+    "ts-jest": "^27.0.7",
+    "typescript": "^4.5.2",
+    "webpack": "^5.64.4",
+    "webpack-cli": "^4.9.1"
+  },
+  "dependencies": {
+    "@types/argparse": "^2.0.10",
+    "@types/benchmark": "^2.1.1",
+    "@types/compression": "1.7.2",
+    "@types/express": "^4.17.13",
+    "@types/node": "^16.11.10",
+    "@types/node-fetch": "^2.5.12",
+    "@types/react": "^17.0.37",
+    "@types/react-dom": "^17.0.11",
+    "@types/swagger-ui-dist": "3.30.1",
+    "argparse": "^2.0.1",
+    "body-parser": "^1.19.0",
+    "compression": "^1.7.4",
+    "cors": "^2.8.5",
+    "express": "^4.17.1",
+    "h264-mp4-encoder": "^1.0.12",
+    "immer": "^9.0.7",
+    "immutable": "^3.8.2",
+    "node-fetch": "^2.6.2",
+    "rxjs": "^7.4.0",
+    "swagger-ui-dist": "^4.1.1",
+    "tslib": "^2.3.1",
+    "util.promisify": "^1.1.1",
+    "xhr2": "^0.2.1"
+  },
+  "peerDependencies": {
+    "react": "^17.0.2",
+    "react-dom": "^17.0.2"
+  },
+  "optionalDependencies": {
+    "gl": "^4.9.2"
+  }
+}